Psyllid ID: psy9593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MFSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSRP
Secondary Structure (PSIPRED)
cccHHcccccHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcccEEEEEccccccccccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccHHHHHHHHHHHccEEEEccccHHHHHHHHHHHHcccEEEEEcccccEHHcccccEEEccHHHccccccHHccccc
Coil and Loop (DISEMBL)
mfsaiitsssilpyqSRLRATKILLIGVEGVGAEIAKNIILSGVKSVclldsgvvtkedvntaqflaphedigknglkpptsrp
Flexible Loop (DISEMBL)
mfsaiitsssilpyqSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVntaqflaphedigknglkpptsrp
Low Complexity Region (SEG)
MFSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSRP
Disordered region (IsUnstruct)
****IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLA*****************
Disordered Region (DISOPRED)
**SA*ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGL****S**
Disordered Region (DISEMBL)
********SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNG********
Disordered Region (DISPRO)
MFSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q28DS0	347	SUMO-activating enzyme su	yes	N/A	0.845	0.204	0.472	7e-12
Q8JGT5	344	SUMO-activating enzyme su	N/A	N/A	0.845	0.206	0.472	1e-11
Q5NVN7	346	SUMO-activating enzyme su	yes	N/A	0.75	0.182	0.531	4e-11
Q9UBE0	346	SUMO-activating enzyme su	no	N/A	0.75	0.182	0.531	4e-11
Q6IQS6	348	SUMO-activating enzyme su	yes	N/A	0.845	0.204	0.472	9e-11
Q6AXQ0	349	SUMO-activating enzyme su	yes	N/A	0.75	0.180	0.5	1e-10
A2VE14	346	SUMO-activating enzyme su	yes	N/A	0.75	0.182	0.515	1e-10
Q9R1T2	350	SUMO-activating enzyme su	yes	N/A	0.75	0.18	0.5	2e-10
P31254	1058	Ubiquitin-like modifier-a	no	N/A	0.678	0.053	0.517	4e-09
P92974	1077	Ubiquitin-activating enzy	yes	N/A	0.690	0.053	0.525	9e-09

>sp|Q28DS0|SAE1_XENTR SUMO-activating enzyme subunit 1 OS=Xenopus tropicalis GN=sae1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   
Sbjct: 26 LEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGS 84

Query: 72 IGKNGLKPPTSR 83
          +G+N  +   +R
Sbjct: 85 LGQNRAEASLNR 96

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.
Xenopus tropicalis (taxid: 8364)

>sp|Q8JGT5|SAE1_XENLA SUMO-activating enzyme subunit 1 OS=Xenopus laevis GN=sae1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   
Sbjct: 26 LEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGS 84

Query: 72 IGKNGLKPPTSR 83
          +G+N  +   +R
Sbjct: 85 LGQNRAEASLNR 96

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

>sp|Q5NVN7|SAE1_PONAB SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct: 28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86

Query: 72 IGKN 75
          +G+N
Sbjct: 87 VGRN 90

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Pongo abelii (taxid: 9601)

>sp|Q9UBE0|SAE1_HUMAN SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct: 28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86

Query: 72 IGKN 75
          +G+N
Sbjct: 87 VGRN 90

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

>sp|Q6IQS6|SAE1_DANRE SUMO-activating enzyme subunit 1 OS=Danio rerio GN=sae1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK + LLD   VT+E    AQFL P + 
Sbjct: 29 LDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQVTEES-RRAQFLIPVDA 87

Query: 72 IGKNGLKPPTSR 83
           G+N  +    R
Sbjct: 88 DGQNHAQASLER 99

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

>sp|Q6AXQ0|SAE1_RAT SUMO-activating enzyme subunit 1 OS=Rattus norvegicus GN=Sae1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++L++G++G+GAEIAKN+IL+GVK + +LD   V+ ED+  AQFL     
Sbjct: 31 LEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDLG-AQFLIRTGS 89

Query: 72 IGKN 75
          +G+N
Sbjct: 90 VGQN 93

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Rattus norvegicus (taxid: 10116)

>sp|A2VE14|SAE1_BOVIN SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     
Sbjct: 28 LEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIRTGS 86

Query: 72 IGKN 75
          +G+N
Sbjct: 87 VGRN 90

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Bos taurus (taxid: 9913)

>sp|Q9R1T2|SAE1_MOUSE SUMO-activating enzyme subunit 1 OS=Mus musculus GN=Sae1 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++L++G++G+GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     
Sbjct: 32 LEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIQTGS 90

Query: 72 IGKN 75
          +G+N
Sbjct: 91 VGRN 94

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Mus musculus (taxid: 10090)

>sp|P31254|UBA1Y_MOUSE Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 18  LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
           L+A+ +L+ G++G+G EIAKNIIL GVK+V L D G+    D+ ++QF    EDIGKN
Sbjct: 69  LQASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADL-SSQFCLREEDIGKN 125

Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP. The Y chromosome form could be involved in the survival and proliferation of differentiating spermatogonia.

Mus musculus (taxid: 10090)

>sp|P92974|UBE12_ARATH Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 17  RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
           +L A+ +L+ G++G+G EIAKNIIL+GVKSV L D  VV   D+ ++ F+   EDIGKN
Sbjct: 89  KLFASNVLISGMQGLGVEIAKNIILAGVKSVTLHDENVVELWDL-SSNFVFTEEDIGKN 146

Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
443691790	348	hypothetical protein CAPTEDRAFT_156595 [	0.75	0.181	0.625	2e-13
357620824	448	SUMO-1 activating enzyme [Danaus plexipp	0.75	0.140	0.640	2e-13
242017702	337	sumo-1-activating enzyme E1a, putative [	0.726	0.181	0.677	2e-13
380010923	334	PREDICTED: SUMO-activating enzyme subuni	0.845	0.212	0.611	1e-12
156407222	342	predicted protein [Nematostella vectensi	0.845	0.207	0.513	2e-12
340710916	335	PREDICTED: SUMO-activating enzyme subuni	0.845	0.211	0.569	4e-12
307187687	334	SUMO-activating enzyme subunit 1 [Campon	0.75	0.188	0.609	5e-12
328788838	334	PREDICTED: SUMO-activating enzyme subuni	0.845	0.212	0.597	5e-12
332016374	333	SUMO-activating enzyme subunit 1 [Acromy	0.75	0.189	0.625	8e-12
350400738	335	PREDICTED: SUMO-activating enzyme subuni	0.845	0.211	0.555	1e-11

>gi|443691790|gb|ELT93541.1| hypothetical protein CAPTEDRAFT_156595 [Capitella teleta]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA ++LLIGV G+GAE+AKNI+LSG+KS+ LLD  VVTKE   T+QFL P  +
Sbjct: 26 LDAQRRLRAARVLLIGVGGLGAEVAKNIVLSGIKSLTLLDHQVVTKEAF-TSQFLIPRSE 84

Query: 72 IGKN 75
          +GKN
Sbjct: 85 LGKN 88

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357620824|gb|EHJ72871.1| SUMO-1 activating enzyme [Danaus plexippus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+K+L+IG+ G+GAEIAKNIILSGVKSVCLLDS  + + D+  +QFLAP + 
Sbjct: 26 LESQKRLRASKVLIIGMSGLGAEIAKNIILSGVKSVCLLDSEKLKETDL-YSQFLAPPDK 84

Query: 72 IGKN 75
          IG+N
Sbjct: 85 IGEN 88

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017702|ref|XP_002429326.1| sumo-1-activating enzyme E1a, putative [Pediculus humanus corporis] gi|212514229|gb|EEB16588.1| sumo-1-activating enzyme E1a, putative [Pediculus humanus corporis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR ++IL+IGV+G GAEIAKNIILSGVKSV LLD GV+T+ED   +QFLAP E 
Sbjct: 26 LESQKRLRNSRILIIGVKGFGAEIAKNIILSGVKSVVLLDDGVLTEEDT-CSQFLAPVEL 84

Query: 72 IG 73
          +G
Sbjct: 85 VG 86

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380010923|ref|XP_003689565.1| PREDICTED: SUMO-activating enzyme subunit 1-like [Apis florea]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA KILLIG+ G GAEIAKNIIL+GVKSV  LD   VT ED   +QFL P E 
Sbjct: 28 LESQKRLRAAKILLIGLNGFGAEIAKNIILAGVKSVIFLDHRNVTVED-RCSQFLTPKEL 86

Query: 72 IGKNGLKPPTSR 83
          IGKN  +    R
Sbjct: 87 IGKNRAEASIQR 98

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156407222|ref|XP_001641443.1| predicted protein [Nematostella vectensis] gi|156228582|gb|EDO49380.1| predicted protein [Nematostella vectensis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA++IL++G+ G+GAEI KN++LSGVKS+ +LD+  VT+ D   +QFLAP E 
Sbjct: 27 LDAQKRLRASRILVVGLAGIGAEICKNLVLSGVKSLTMLDNNPVTERDF-VSQFLAPREA 85

Query: 72 IGKNGLKPPTSR 83
          +GKN  +   +R
Sbjct: 86 LGKNRAEASLAR 97

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|340710916|ref|XP_003394029.1| PREDICTED: SUMO-activating enzyme subunit 1-like [Bombus terrestris]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR  KILLIG+ G GAEIAKNIIL+GVK++  LD   VT ED   +QFLAP E 
Sbjct: 28 LESQKRLREAKILLIGLNGYGAEIAKNIILAGVKAITFLDHRNVTVED-RCSQFLAPREL 86

Query: 72 IGKNGLKPPTSR 83
          +GKN  +    R
Sbjct: 87 LGKNRAEASVQR 98

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187687|gb|EFN72659.1| SUMO-activating enzyme subunit 1 [Camponotus floridanus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA K+LLIG++G GAEIAKNIIL+GV +V  LD   VT+ D   +QF  P ED
Sbjct: 28 LDSQKRLRAAKVLLIGLDGFGAEIAKNIILAGVNTVTFLDHRNVTELD-RCSQFFVPKED 86

Query: 72 IGKN 75
          IGKN
Sbjct: 87 IGKN 90

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788838|ref|XP_394348.4| PREDICTED: SUMO-activating enzyme subunit 1 [Apis mellifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA KILLIG+ G GAEIAKNIIL+GVKSV  LD   VT ED   +QFL P E 
Sbjct: 28 LESQKRLRAAKILLIGLNGFGAEIAKNIILAGVKSVTFLDHRNVTVED-RCSQFLTPKEL 86

Query: 72 IGKNGLKPPTSR 83
          I KN  +    R
Sbjct: 87 IEKNRAEASIQR 98

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016374|gb|EGI57287.1| SUMO-activating enzyme subunit 1 [Acromyrmex echinatior]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA KILLIG++G GAEIAKNIIL+GVKSV  LD    T+ D   +QF  P ED
Sbjct: 27 LDSQKRLRAAKILLIGLDGFGAEIAKNIILAGVKSVTFLDHRNATELD-RCSQFFIPKED 85

Query: 72 IGKN 75
          IG N
Sbjct: 86 IGNN 89

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400738|ref|XP_003485941.1| PREDICTED: SUMO-activating enzyme subunit 1-like [Bombus impatiens]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLR  KILLIG+ G GAEIAKNIIL+GVK++  LD   VT +D   +QFLAP E 
Sbjct: 28 LESQKRLREAKILLIGLNGYGAEIAKNIILAGVKAITFLDHRNVTVQD-RCSQFLAPREL 86

Query: 72 IGKNGLKPPTSR 83
          +GKN  +    R
Sbjct: 87 LGKNRAEASVQR 98

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
UNIPROTKB|Q8JGT5	344	sae1 "SUMO-activating enzyme s	0.845	0.206	0.472	8.7e-12
UNIPROTKB|Q28DS0	347	sae1 "SUMO-activating enzyme s	0.845	0.204	0.472	8.9e-12
UNIPROTKB|B3KNJ4	299	SAE1 "cDNA FLJ14689 fis, clone	0.75	0.210	0.531	2e-11
FB|FBgn0029512	337	Aos1 "Aos1" [Drosophila melano	0.845	0.210	0.527	2.9e-11
UNIPROTKB|Q9UBE0	346	SAE1 "SUMO-activating enzyme s	0.75	0.182	0.531	3.2e-11
UNIPROTKB|Q5NVN7	346	SAE1 "SUMO-activating enzyme s	0.75	0.182	0.531	3.2e-11
UNIPROTKB|E2RSL5	346	SAE1 "Uncharacterized protein"	0.75	0.182	0.515	6.8e-11
UNIPROTKB|F1RM03	346	SAE1 "Uncharacterized protein"	0.75	0.182	0.515	8.7e-11
ZFIN|ZDB-GENE-040625-21	348	sae1 "SUMO1 activating enzyme	0.75	0.181	0.515	8.9e-11
RGD|1306098	349	Sae1 "SUMO1 activating enzyme	0.75	0.180	0.5	8.9e-11

UNIPROTKB|Q8JGT5 sae1 "SUMO-activating enzyme subunit 1" [Xenopus laevis (taxid:8355)]

 Score = 165 (63.1 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 34/72 (47%), Positives = 51/72 (70%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   
Sbjct:    26 LEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGS 84

Query:    72 IGKNGLKPPTSR 83
             +G+N  +   +R
Sbjct:    85 LGQNRAEASLNR 96

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|Q28DS0 sae1 "SUMO-activating enzyme subunit 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 165 (63.1 bits), Expect = 8.9e-12, P = 8.9e-12
 Identities = 34/72 (47%), Positives = 51/72 (70%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   
Sbjct:    26 LEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGS 84

Query:    72 IGKNGLKPPTSR 83
             +G+N  +   +R
Sbjct:    85 LGQNRAEASLNR 96

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|B3KNJ4 SAE1 "cDNA FLJ14689 fis, clone NT2RP2005204, highly similar to Ubiquitin-like 1-activating enzyme E1A" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct:    28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86

Query:    72 IGKN 75
             +G+N
Sbjct:    87 VGRN 90

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

FB|FBgn0029512 Aos1 "Aos1" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLR  KIL+ G+ G+GAEI KNIILSGV SV LLD   VT+ED   +QFL P E 
Sbjct:    31 LESQKRLRTAKILIAGLCGLGAEITKNIILSGVNSVKLLDDKDVTEEDF-CSQFLVPRES 89

Query:    72 IGKNGLKPPTSR 83
             +  N  +   +R
Sbjct:    90 LNTNRAEASLTR 101

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;NAS

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019950 "SMT3-dependent protein catabolic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

UNIPROTKB|Q9UBE0 SAE1 "SUMO-activating enzyme subunit 1" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct:    28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86

Query:    72 IGKN 75
             +G+N
Sbjct:    87 VGRN 90

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0004839 "ubiquitin activating enzyme activity" evidence=TAS

GO:0043008 "ATP-dependent protein binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=TAS;IPI

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0008022 "protein C-terminus binding" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019948 "SUMO activating enzyme activity" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

UNIPROTKB|Q5NVN7 SAE1 "SUMO-activating enzyme subunit 1" [Pongo abelii (taxid:9601)]

 Score = 160 (61.4 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct:    28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86

Query:    72 IGKN 75
             +G+N
Sbjct:    87 VGRN 90

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|E2RSL5 SAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     
Sbjct:    28 LEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDPEQVSPEDPG-AQFLVRTGS 86

Query:    72 IGKN 75
             +G+N
Sbjct:    87 VGRN 90

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RM03 SAE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 8.7e-11, P = 8.7e-11
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     
Sbjct:    28 LEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIRTGS 86

Query:    72 IGKN 75
             +G+N
Sbjct:    87 VGRN 90

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040625-21 sae1 "SUMO1 activating enzyme subunit 1" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLR +++LL+G+ G+GAE+AKN+IL+GVK + LLD   VT+E    AQFL P + 
Sbjct:    29 LDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQVTEES-RRAQFLIPVDA 87

Query:    72 IGKN 75
              G+N
Sbjct:    88 DGQN 91

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0061484 "hematopoietic stem cell homeostasis" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

RGD|1306098 Sae1 "SUMO1 activating enzyme subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 32/64 (50%), Positives = 48/64 (75%)

Query:    12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
             L  Q RLRA+++L++G++G+GAEIAKN+IL+GVK + +LD   V+ ED+  AQFL     
Sbjct:    31 LEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDLG-AQFLIRTGS 89

Query:    72 IGKN 75
             +G+N
Sbjct:    90 VGQN 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;ISO;ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISO;ISS

GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NVN7	SAE1_PONAB	No assigned EC number	0.5312	0.75	0.1820	yes	N/A
P92974	UBE12_ARATH	No assigned EC number	0.5254	0.6904	0.0538	yes	N/A
A2VE14	SAE1_BOVIN	No assigned EC number	0.5156	0.75	0.1820	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	3e-23
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	3e-16
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	4e-13
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	2e-12
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	8e-11
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	8e-10
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	6e-09
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	8e-08
pfam00899	134	pfam00899, ThiF, ThiF family	2e-07
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	2e-06
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	4e-06
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	8e-06
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	3e-04
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	0.001
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	0.002

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 87.3 bits (217), Expect = 3e-23
 Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q RLR+ +ILLIG++G+GAEIAKN++LSG+ S+ +LD   VT+ED+  AQFL P ED+G+
Sbjct: 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLG-AQFLIPAEDLGQ 74

Query: 75 N 75
          N
Sbjct: 75 N 75

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 70.4 bits (173), Expect = 3e-16
 Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
           +L+ + +L+ G+ G+G EIAKN+IL+GVKSV L D+   +  D+ ++QF    EDIGKN
Sbjct: 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKN 73

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 60.9 bits (148), Expect = 4e-13
 Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAP-HEDIG 73
          Q++LR+ K+L+IG   +GAEIAKN++L+G+ S+ ++D  +V+ ED+ +  FL     + G
Sbjct: 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSG 73

Query: 74 KNGLK 78
           N   
Sbjct: 74 MNRAA 78

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
          ++  + +L+ G+ G+G EIAKN++L+GVKSV L D+      D+++  F    +D+G+N
Sbjct: 21 KMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSS-NFFLSEDDVGRN 78

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 55.5 bits (134), Expect = 8e-11
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q +L+ +++L++G  G+G+  AK + L+GV  + ++D   V   ++   QFL    D+GK
Sbjct: 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQR-QFLFTEADVGK 83

Query: 75 N 75
           
Sbjct: 84 P 84

Length = 254

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 52.7 bits (127), Expect = 8e-10
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q+ L +  + L+     G EI KN++L G+ S  ++D   V +ED+    FL     +GK
Sbjct: 15 QAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGK 73

Query: 75 N 75
          +
Sbjct: 74 S 74

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
          ++LL+G+ G+G+EIA N+  SGV  + L+D   V   ++N  QFLA   DIGK 
Sbjct: 1  RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLN-RQFLARQADIGKP 53

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 47.4 bits (112), Expect = 8e-08
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q +L  T + L GV G  AE AKN++L+GV++V + D G+VT  DV T  +L   E  G 
Sbjct: 21 QQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCT-NYLMQGEAGGT 79

Query: 75 NGLK 78
           G +
Sbjct: 80 RGAR 83

Length = 287

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 44.5 bits (106), Expect = 2e-07
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 75
          ++++L++G  G+G+  A+ +  +GV  + L+D   V   ++N  Q L    DIGK 
Sbjct: 1  SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNR-QILFTESDIGKP 55

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          K+L++G  G+G E+ KN++L+G   + ++D   +   ++N  QFL   + +GK
Sbjct: 1  KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNR-QFLFRKKHVGK 52

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          KIL+IG  G+G E+ KN+ LSG +++ ++D   +   ++N  QFL   +DIGK
Sbjct: 1  KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNR-QFLFREKDIGK 52

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          K+LL+G  G+G E+ KN+ L G   + ++D   +   ++N  QFL   +DIG+
Sbjct: 1  KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 52

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q +L+  K+ ++GV G+G+ +A  +  +GV  + L+D       ++N  Q L   ED+GK
Sbjct: 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNR-QILHWEEDLGK 80

Query: 75 N 75
          N
Sbjct: 81 N 81

Length = 231

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q +L+  ++L++G  G+G+  A+ +  +GV  + L+D  VV   ++   Q L    D+G+
Sbjct: 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQR-QILHTEADVGQ 74

Query: 75 N 75
           
Sbjct: 75 P 75

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          K+ + G  G+G+ IA  +  SGV ++ L+D  VV   ++N  Q+      IG+
Sbjct: 1  KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFL--SQIGE 51

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	99.92
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	99.92
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	99.92
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	99.91
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	99.91
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	99.91
PRK07411	390	hypothetical protein; Validated	99.91
PRK08223	287	hypothetical protein; Validated	99.91
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	99.91
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.91
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.9
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.9
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.89
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.89
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.88
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.88
PRK08328	231	hypothetical protein; Provisional	99.87
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	99.87
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	99.87
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.87
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.86
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	99.86
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	99.86
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.86
PRK14851	679	hypothetical protein; Provisional	99.85
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.85
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.85
PRK14852	989	hypothetical protein; Provisional	99.85
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	99.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.84
KOG2015|consensus	422		99.84
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.83
KOG2013|consensus	603		99.82
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.82
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.81
PRK06153	393	hypothetical protein; Provisional	99.81
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.8
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.8
KOG2014|consensus	331		99.78
KOG2017|consensus	427		99.78
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.76
PRK07877	722	hypothetical protein; Provisional	99.75
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.74
KOG2012|consensus	1013		99.74
KOG2012|consensus	1013		99.73
KOG2018|consensus	430		99.65
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.63
KOG2016|consensus	523		99.62
KOG2336|consensus	422		99.25
KOG2337|consensus	669		99.21
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	98.33
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.89
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.67
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.56
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.52
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.24
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.11
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.1
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.07
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.99
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.99
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	96.9
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.84
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.84
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.83
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.81
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.77
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.76
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.68
PTZ00117	319	malate dehydrogenase; Provisional	96.67
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.66
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.65
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.64
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.64
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.6
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.54
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.53
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.49
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.48
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.47
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.46
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.45
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.44
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.42
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.38
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.37
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.36
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.34
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.33
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.32
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.32
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.31
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.22
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.21
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.17
PRK14982	340	acyl-ACP reductase; Provisional	96.15
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.15
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.15
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.14
PRK09126	392	hypothetical protein; Provisional	96.14
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.13
PRK12367	245	short chain dehydrogenase; Provisional	96.12
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.12
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.08
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.08
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.07
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.06
PLN00203	519	glutamyl-tRNA reductase	96.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.0
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.99
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.96
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.95
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.94
PRK06185	407	hypothetical protein; Provisional	95.94
PRK06184	502	hypothetical protein; Provisional	95.93
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.91
PRK08013	400	oxidoreductase; Provisional	95.91
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PRK07236	386	hypothetical protein; Provisional	95.87
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.87
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	95.85
PRK06223	307	malate dehydrogenase; Reviewed	95.84
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.84
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.83
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.83
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.82
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.8
PRK06753	373	hypothetical protein; Provisional	95.8
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.79
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.78
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.75
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.75
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.75
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	95.74
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.72
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.71
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.7
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.68
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.67
PRK08163	396	salicylate hydroxylase; Provisional	95.67
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	95.65
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.62
PRK06847	375	hypothetical protein; Provisional	95.61
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.59
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.58
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.57
PRK08264	238	short chain dehydrogenase; Validated	95.53
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.53
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.53
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.52
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	95.52
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	95.51
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.5
PRK08244	493	hypothetical protein; Provisional	95.49
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.48
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.48
PRK13243	333	glyoxylate reductase; Reviewed	95.48
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.47
PLN02602	350	lactate dehydrogenase	95.47
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.46
PRK12480	330	D-lactate dehydrogenase; Provisional	95.46
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.45
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.42
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.41
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.41
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.41
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.4
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.39
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.37
PRK12862	763	malic enzyme; Reviewed	95.37
PRK06834	488	hypothetical protein; Provisional	95.36
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.35
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.34
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.32
PRK06126	545	hypothetical protein; Provisional	95.31
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.3
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.3
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.3
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.29
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.29
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.28
PRK07045	388	putative monooxygenase; Reviewed	95.28
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.28
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.27
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	95.27
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.26
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	95.23
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.23
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.22
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.22
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.21
PLN02928	347	oxidoreductase family protein	95.2
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.2
PRK05868	372	hypothetical protein; Validated	95.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.19
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PLN00106	323	malate dehydrogenase	95.18
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.17
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.17
PRK07588	391	hypothetical protein; Provisional	95.17
PRK08132	547	FAD-dependent oxidoreductase; Provisional	95.12
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.11
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.11
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.09
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.08
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.06
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.06
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.06
PRK12861	764	malic enzyme; Reviewed	95.06
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.05
PRK06194	287	hypothetical protein; Provisional	95.04
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.04
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	95.04
PRK06198	260	short chain dehydrogenase; Provisional	95.01
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.0
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	95.0
PRK07190	487	hypothetical protein; Provisional	95.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	94.98
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.98
PRK06475	400	salicylate hydroxylase; Provisional	94.96
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.94
PRK07417	279	arogenate dehydrogenase; Reviewed	94.93
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.93
PRK10157	428	putative oxidoreductase FixC; Provisional	94.91
PTZ00325	321	malate dehydrogenase; Provisional	94.9
PRK07576	264	short chain dehydrogenase; Provisional	94.89
PRK12829	264	short chain dehydrogenase; Provisional	94.89
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.89
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.86
PRK07538	413	hypothetical protein; Provisional	94.84
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	94.81
PLN02464	627	glycerol-3-phosphate dehydrogenase	94.79
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.76
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	94.75
PRK06841	255	short chain dehydrogenase; Provisional	94.74
PRK08294	634	phenol 2-monooxygenase; Provisional	94.73
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.73
PRK10669	558	putative cation:proton antiport protein; Provision	94.72
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.72
PRK08265	261	short chain dehydrogenase; Provisional	94.7
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.7
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	94.68
PRK07067	257	sorbitol dehydrogenase; Provisional	94.68
PRK06057	255	short chain dehydrogenase; Provisional	94.66
PRK06523	260	short chain dehydrogenase; Provisional	94.66
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.65
KOG0685|consensus	498		94.62
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	94.62
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	94.62
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.61
PRK13529	563	malate dehydrogenase; Provisional	94.56
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.56
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.54
PLN02985	514	squalene monooxygenase	94.54
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.52
PLN02256	304	arogenate dehydrogenase	94.5
PRK06996	398	hypothetical protein; Provisional	94.49
PLN02253	280	xanthoxin dehydrogenase	94.47
PTZ00317	559	NADP-dependent malic enzyme; Provisional	94.46
PLN02494	477	adenosylhomocysteinase	94.45
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	94.43
PRK08507	275	prephenate dehydrogenase; Validated	94.41
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.41
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	94.41
PRK12828	239	short chain dehydrogenase; Provisional	94.41
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	94.4
PRK05442	326	malate dehydrogenase; Provisional	94.4
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	94.39
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.38
PLN02463	447	lycopene beta cyclase	94.37
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.36
PRK06436	303	glycerate dehydrogenase; Provisional	94.34
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.33
PRK09496	453	trkA potassium transporter peripheral membrane com	94.33
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.33
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.32
PRK07774	250	short chain dehydrogenase; Provisional	94.31
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.3
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.29
PRK05875	276	short chain dehydrogenase; Provisional	94.29
PRK07680	273	late competence protein ComER; Validated	94.29
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.28
PRK05257	494	malate:quinone oxidoreductase; Validated	94.27
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.27
PRK07856	252	short chain dehydrogenase; Provisional	94.26
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	94.25
PRK08703	239	short chain dehydrogenase; Provisional	94.25
PRK07035	252	short chain dehydrogenase; Provisional	94.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.22
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	94.22
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.21
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.21
PRK06487	317	glycerate dehydrogenase; Provisional	94.21
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.2
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.18
PRK08226	263	short chain dehydrogenase; Provisional	94.18
PRK07574	385	formate dehydrogenase; Provisional	94.18
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	94.18
PRK07060	245	short chain dehydrogenase; Provisional	94.17
PRK07478	254	short chain dehydrogenase; Provisional	94.17
PRK07063	260	short chain dehydrogenase; Provisional	94.16
PRK06949	258	short chain dehydrogenase; Provisional	94.16
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.16
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	94.15
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.15
PRK05866	293	short chain dehydrogenase; Provisional	94.14
KOG4169|consensus	261		94.11
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	94.11
PRK10015	429	oxidoreductase; Provisional	94.11
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.1
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.1
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.1
PRK08589	272	short chain dehydrogenase; Validated	94.1
PRK09496	453	trkA potassium transporter peripheral membrane com	94.09
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.09
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	94.08
PRK07831	262	short chain dehydrogenase; Provisional	94.08
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	94.08
PRK12746	254	short chain dehydrogenase; Provisional	94.07
PLN03139	386	formate dehydrogenase; Provisional	94.06
PRK06500	249	short chain dehydrogenase; Provisional	94.06
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.06
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.05
PRK05717	255	oxidoreductase; Validated	94.05
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.01
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.98
PRK06172	253	short chain dehydrogenase; Provisional	93.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.96
PRK04148	134	hypothetical protein; Provisional	93.95
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.95
PRK06196	315	oxidoreductase; Provisional	93.95
PTZ00431	260	pyrroline carboxylate reductase; Provisional	93.94
PRK06398	258	aldose dehydrogenase; Validated	93.92
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	93.92
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	93.91
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.91
PRK06197	306	short chain dehydrogenase; Provisional	93.9
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.87
PRK09072	263	short chain dehydrogenase; Provisional	93.87
PRK05876	275	short chain dehydrogenase; Provisional	93.85
PRK07890	258	short chain dehydrogenase; Provisional	93.85
PRK06545	359	prephenate dehydrogenase; Validated	93.83
PRK07814	263	short chain dehydrogenase; Provisional	93.82
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.78
PRK08628	258	short chain dehydrogenase; Provisional	93.78
PRK06138	252	short chain dehydrogenase; Provisional	93.78
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	93.78
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.76
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.75
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.75
PTZ00367	567	squalene epoxidase; Provisional	93.75
PRK07024	257	short chain dehydrogenase; Provisional	93.73
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	93.73
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.72
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	93.72
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	93.72
PRK10537	393	voltage-gated potassium channel; Provisional	93.68
PRK08339	263	short chain dehydrogenase; Provisional	93.67
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.67
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.64
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.64
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.63
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.63
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.63
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.62
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	93.61
PLN02477	410	glutamate dehydrogenase	93.59
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.57
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.57
PRK06932	314	glycerate dehydrogenase; Provisional	93.57
PRK08085	254	gluconate 5-dehydrogenase; Provisional	93.55
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.52
PRK08017	256	oxidoreductase; Provisional	93.51
PRK12831	464	putative oxidoreductase; Provisional	93.51
PRK06114	254	short chain dehydrogenase; Provisional	93.51
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.5
PRK12939	250	short chain dehydrogenase; Provisional	93.48
PRK06125	259	short chain dehydrogenase; Provisional	93.48
PLN02572	442	UDP-sulfoquinovose synthase	93.48
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.48
PTZ00383	497	malate:quinone oxidoreductase; Provisional	93.45
PRK06940	275	short chain dehydrogenase; Provisional	93.45
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.44
PRK09242	257	tropinone reductase; Provisional	93.42
PRK08278	273	short chain dehydrogenase; Provisional	93.42
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.42
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.4
PRK08605	332	D-lactate dehydrogenase; Validated	93.39
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.38
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.38
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.38
PRK07233	434	hypothetical protein; Provisional	93.37
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.33
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	93.33
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.32
PLN02852	491	ferredoxin-NADP+ reductase	93.32
PRK12827	249	short chain dehydrogenase; Provisional	93.31
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.3
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.3
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	93.28
PRK06924	251	short chain dehydrogenase; Provisional	93.28
PRK07825	273	short chain dehydrogenase; Provisional	93.28
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.26
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	93.25
PRK05867	253	short chain dehydrogenase; Provisional	93.25
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.24
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.23
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.22
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.2
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	93.2
PRK05872	296	short chain dehydrogenase; Provisional	93.18
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	93.18
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	93.18
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.16
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	93.16
PRK08177	225	short chain dehydrogenase; Provisional	93.16
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	93.15
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.15
PLN02688	266	pyrroline-5-carboxylate reductase	93.14
PRK11883	451	protoporphyrinogen oxidase; Reviewed	93.13
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.12
PLN02240	352	UDP-glucose 4-epimerase	93.11
PRK07453	322	protochlorophyllide oxidoreductase; Validated	93.11
PRK07791	286	short chain dehydrogenase; Provisional	93.1
PLN02697	529	lycopene epsilon cyclase	93.09
PRK09186	256	flagellin modification protein A; Provisional	93.09
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.09
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	93.07
PRK07326	237	short chain dehydrogenase; Provisional	93.07
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	93.06
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.05
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.05
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	93.04
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	93.03
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	93.01
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	92.98
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.96
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	92.94
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	92.93
PRK08251	248	short chain dehydrogenase; Provisional	92.89
PRK14694	468	putative mercuric reductase; Provisional	92.86
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.86
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
PRK06701	290	short chain dehydrogenase; Provisional	92.84
PRK08643	256	acetoin reductase; Validated	92.83
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.82
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.81
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.8
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	92.8
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.8
PRK09897	534	hypothetical protein; Provisional	92.79
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.78
PRK11445	351	putative oxidoreductase; Provisional	92.78
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.77
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.75
PRK06720	169	hypothetical protein; Provisional	92.74
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.71
PRK07677	252	short chain dehydrogenase; Provisional	92.71
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	92.71
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	92.71
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	92.69
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	92.68
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.68
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	92.67
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	92.67
PRK10262	321	thioredoxin reductase; Provisional	92.66
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.64
PRK12742	237	oxidoreductase; Provisional	92.63
PRK06370	463	mercuric reductase; Validated	92.62
PLN02712	667	arogenate dehydrogenase	92.58
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	92.57
PRK07102	243	short chain dehydrogenase; Provisional	92.56
PRK06128	300	oxidoreductase; Provisional	92.54
PRK07097	265	gluconate 5-dehydrogenase; Provisional	92.53
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.52
PRK07577	234	short chain dehydrogenase; Provisional	92.51
PRK07062	265	short chain dehydrogenase; Provisional	92.5
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.5
PRK05854	313	short chain dehydrogenase; Provisional	92.5
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.49
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	92.48
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	92.47
PRK12938	246	acetyacetyl-CoA reductase; Provisional	92.47
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.46
PRK14031	444	glutamate dehydrogenase; Provisional	92.46
PRK05993	277	short chain dehydrogenase; Provisional	92.46
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.45
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.42
PRK07208	479	hypothetical protein; Provisional	92.41
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.4
KOG0069|consensus	336		92.38
PLN02306	386	hydroxypyruvate reductase	92.36

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=99.92  E-value=8e-26  Score=154.41  Aligned_cols=74  Identities=51%  Similarity=0.773  Sum_probs=71.4

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .++.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.|+++|+ +||||++++|+|++|+++++++
T Consensus        10 l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL-~rqfl~~~~diG~~Ka~a~~~~   83 (197)
T cd01492          10 LWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL-GAQFLIPAEDLGQNRAEASLER   83 (197)
T ss_pred             HhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhC-CCCccccHHHcCchHHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999999 9999999999999999998764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=99.92  E-value=1.7e-25  Score=157.00  Aligned_cols=77  Identities=22%  Similarity=0.411  Sum_probs=73.7

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||++++++|+|++|+++++++
T Consensus        18 ~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~Ka~~a~~~   94 (245)
T PRK05690         18 ILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL-QRQVLHDDATIGQPKVESARAA   94 (245)
T ss_pred             cchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh-hhhhcCChhhCCChHHHHHHHH
Confidence            3588999999999999999999999999999999999999999999999999999 9999999999999999998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=99.92  E-value=2.2e-25  Score=154.46  Aligned_cols=76  Identities=24%  Similarity=0.410  Sum_probs=72.9

Q ss_pred             cCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           7 TSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         7 ~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ++.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||||+.++|+|++|+++++++
T Consensus         8 l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~   83 (228)
T cd00757           8 LPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL-QRQILHTEADVGQPKAEAAAER   83 (228)
T ss_pred             hhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc-ccccccChhhCCChHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999 9999999999999999998764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=99.91  E-value=2.7e-25  Score=159.49  Aligned_cols=80  Identities=38%  Similarity=0.537  Sum_probs=74.2

Q ss_pred             ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593           2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~   81 (84)
                      ||+- ...+|.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|| +||||++++|+|++||++++
T Consensus         2 YsRQ-l~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL-~rqf~~~~~dIGk~Kaea~~   79 (286)
T cd01491           2 YSRQ-LYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQ   79 (286)
T ss_pred             cccc-eeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc-ccCccCChHHhCHHHHHHHH
Confidence            3443 456899999999999999999999999999999999999999999999999999 99999999999999999987


Q ss_pred             CC
Q psy9593          82 SR   83 (84)
Q Consensus        82 ~r   83 (84)
                      ++
T Consensus        80 ~~   81 (286)
T cd01491          80 AR   81 (286)
T ss_pred             HH
Confidence            64

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=99.91  E-value=2.6e-25  Score=152.08  Aligned_cols=77  Identities=25%  Similarity=0.391  Sum_probs=73.8

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .++.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +|||+|+++|+|++|+++++++
T Consensus         7 ~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~   83 (202)
T TIGR02356         7 LLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL-QRQILFTEEDVGRPKVEVAAQR   83 (202)
T ss_pred             cchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccch-hhhhccChhhCCChHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999999999 9999999999999999998764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=99.91  E-value=5.3e-25  Score=150.35  Aligned_cols=74  Identities=32%  Similarity=0.506  Sum_probs=70.6

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccC--CccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~--~diGk~ka~~~~~r   83 (84)
                      .++.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++++|+ +||||+++  +|+|++|+++++++
T Consensus         8 l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl-~rq~~~~~~~~~iG~~Ka~~~~~~   83 (198)
T cd01485           8 LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL-GSNFFLDAEVSNSGMNRAAASYEF   83 (198)
T ss_pred             ccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC-cccEecccchhhcCchHHHHHHHH
Confidence            3889999999999999999999999999999999999999999999999999 99999998  89999999988754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07411 hypothetical protein; Validated

Probab=99.91  E-value=4.1e-25  Score=163.58  Aligned_cols=78  Identities=24%  Similarity=0.404  Sum_probs=74.7

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+|+++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus        23 ~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL-~RQ~l~~~~dvG~~Ka~~a~~~  100 (390)
T PRK07411         23 LILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL-QRQVIHGTSWVGKPKIESAKNR  100 (390)
T ss_pred             echhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc-CcCcccChHHCCCcHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999 9999999999999999998764

>PRK08223 hypothetical protein; Validated

Probab=99.91  E-value=6.7e-25  Score=157.56  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=71.7

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ...+.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|+ +||++++++|+|++|+++++++
T Consensus        15 ~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL-nRQ~l~~~~diG~~Kve~a~~~   89 (287)
T PRK08223         15 GWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF-NRQAGAMMSTLGRPKAEVLAEM   89 (287)
T ss_pred             hhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc-ccccCcChhHCCCcHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999 9999999999999999998765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=99.91  E-value=7.5e-25  Score=153.54  Aligned_cols=78  Identities=24%  Similarity=0.437  Sum_probs=74.1

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.++..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|| +||++++++|+|++|+++++++
T Consensus         9 ~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~RQ~l~~~~diG~~Ka~~a~~~   86 (240)
T TIGR02355         9 IILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL-QRQVLHSDANIGQPKVESAKDA   86 (240)
T ss_pred             eecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc-ccceeeeHhhCCCcHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999 9999999999999999998764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.91  E-value=1.1e-24  Score=159.72  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=74.6

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+|.++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus        13 ~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~   90 (355)
T PRK05597         13 IMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPKAESAREA   90 (355)
T ss_pred             echhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999 9999999999999999998764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.90  E-value=1.3e-24  Score=160.78  Aligned_cols=77  Identities=21%  Similarity=0.404  Sum_probs=73.8

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|+++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus        28 ~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~  104 (392)
T PRK07878         28 IIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL-QRQVIHGQSDVGRSKAQSARDS  104 (392)
T ss_pred             chhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc-ccccccChhcCCChHHHHHHHH
Confidence            4588999999999999999999999999999999999999999999999999999 9999999999999999998764

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.90  E-value=3.5e-24  Score=149.80  Aligned_cols=73  Identities=26%  Similarity=0.333  Sum_probs=70.2

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|+ +||+++..+|+|++|++++++|
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~   73 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAER   73 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999 9999999999999999998775

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.89  E-value=8.5e-24  Score=155.89  Aligned_cols=78  Identities=23%  Similarity=0.439  Sum_probs=74.5

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|| +||++|+++|+|++|+++++++
T Consensus        26 i~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ~l~~~~diG~~Ka~~~~~~  103 (370)
T PRK05600         26 LALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQILFGASDVGRPKVEVAAER  103 (370)
T ss_pred             cchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-cccccCChhHCCCHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999 9999999999999999998765

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.89  E-value=1.2e-23  Score=145.12  Aligned_cols=80  Identities=25%  Similarity=0.366  Sum_probs=74.2

Q ss_pred             ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593           2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~   81 (84)
                      |++.+.+..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||+|+ ++|+|++|+++++
T Consensus        10 ~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~~-~~dvG~~Ka~~a~   87 (212)
T PRK08644         10 FEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNL-NRQQYF-ISQIGMPKVEALK   87 (212)
T ss_pred             HHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccc-cccEee-hhhCCChHHHHHH
Confidence            45567788999999999999999999999999999999999999999999999999999 999876 7899999999887


Q ss_pred             CC
Q psy9593          82 SR   83 (84)
Q Consensus        82 ~r   83 (84)
                      ++
T Consensus        88 ~~   89 (212)
T PRK08644         88 EN   89 (212)
T ss_pred             HH
Confidence            54

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.88  E-value=2.1e-23  Score=148.30  Aligned_cols=72  Identities=33%  Similarity=0.452  Sum_probs=68.8

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ++.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|| +||||+++ ++|++|+++++++
T Consensus        16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL-~RQfl~~~-dvGk~KAeaAa~~   87 (287)
T PTZ00245         16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADV-CTNYLMQG-EAGGTRGARALGA   87 (287)
T ss_pred             hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhh-cccccccc-ccCCcHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999 99999997 6899999988654

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.88  E-value=2.3e-23  Score=155.99  Aligned_cols=74  Identities=24%  Similarity=0.373  Sum_probs=71.1

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|.++|++|++++|||+|+||+|+|++|||+++|||+|+|+|++.|+++|+ ++|||++.+|+|++||++++++
T Consensus         9 LwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL-~~nFfl~~~diGk~kA~~~~~~   82 (425)
T cd01493           9 LWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDL-GNNFFLDASSLGKSRAEATCEL   82 (425)
T ss_pred             HhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhc-cccccCChhhcCcHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999 9999999999999999998754

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK08328 hypothetical protein; Provisional

Probab=99.87  E-value=8.5e-23  Score=142.24  Aligned_cols=72  Identities=25%  Similarity=0.356  Sum_probs=68.4

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCc-hhhhcccC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK-NGLKPPTS   82 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk-~ka~~~~~   82 (84)
                      ++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+.+|+ +||+++.++|+|+ +|++++++
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~~k~~~a~~   89 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL-NRQILHWEEDLGKNPKPLSAKW   89 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhh-ccccccChhhcCchHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999 9999999999999 58887654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=99.87  E-value=7e-23  Score=149.54  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccC--chhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diG--k~ka~~~~~r   83 (84)
                      ..|.++.++|++|++++|+|+|+|++|++++++|+++|+++|+|+|+|.|+.+|| +||++|+++|+|  ++||++++++
T Consensus        10 ~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL-~RQ~l~~~~d~~~g~~Ka~aa~~~   88 (338)
T PRK12475         10 LFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL-QRQQLYTEEDAKQKKPKAIAAKEH   88 (338)
T ss_pred             chhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc-CccccccHHHccCCccHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999 999999999985  8999988764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=99.87  E-value=8.2e-23  Score=149.22  Aligned_cols=77  Identities=23%  Similarity=0.298  Sum_probs=72.6

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccC--chhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diG--k~ka~~~~~r   83 (84)
                      +.|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+|| +||++++++|+|  ++|+++++++
T Consensus        10 ~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~RQ~l~~~~dig~g~~Ka~aa~~~   88 (339)
T PRK07688         10 LFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL-QRQQLYTESDVKNNLPKAVAAKKR   88 (339)
T ss_pred             chhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc-CccccccHHHhcCCCcHHHHHHHH
Confidence            4588999999999999999999999999999999999999999999999999999 999999999995  5999987654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.87  E-value=9.2e-23  Score=145.36  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ..++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.++++|+ +||+++..+++|++|++++++|
T Consensus        18 ~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~~~r   92 (268)
T PRK15116         18 RLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVMAER   92 (268)
T ss_pred             HHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999 9999998999999999998875

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.86  E-value=3.3e-22  Score=128.48  Aligned_cols=64  Identities=41%  Similarity=0.713  Sum_probs=58.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|+ +||++++.+|+|++|+++++++
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~   64 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL-NRQFLYTEEDVGKNKAEAAKER   64 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC-CTCTTS-GGGTTSBHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc-ccccccccccchhHHHHHHHHH
Confidence            578999999999999999999999999999999999999999 9999999999999999998764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.86  E-value=2.8e-22  Score=147.42  Aligned_cols=77  Identities=25%  Similarity=0.404  Sum_probs=73.4

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||++++++|+|++|+++++++
T Consensus       121 ~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka~~~~~~  197 (376)
T PRK08762        121 RLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL-QRQILHTEDRVGQPKVDSAAQR  197 (376)
T ss_pred             chhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhh-ccccccchhhCCCcHHHHHHHH
Confidence            3577899999999999999999999999999999999999999999999999999 9999999999999999998764

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=99.86  E-value=1.9e-22  Score=145.19  Aligned_cols=61  Identities=34%  Similarity=0.596  Sum_probs=59.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ||+|+|+||+|+|++|+|+++|+++|+|+|+|.|+.+|| +||||++++|+|++||++++++
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL-nRQfLf~~~dIGk~KAevaa~~   61 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNL-NRQFLFREKDIGKPKAEVAAKF   61 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccc-CcCcccChHHcchHHHHHHHHH
Confidence            699999999999999999999999999999999999999 9999999999999999998764

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=99.86  E-value=2.2e-22  Score=140.94  Aligned_cols=61  Identities=30%  Similarity=0.560  Sum_probs=58.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ||+|+|+||+|+|++|+|+++|+++|+++|+|.|+++|| +|||||+++|+|++|+++++++
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL-nRQflf~~~dvGk~Ka~va~~~   61 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKSEVAAEA   61 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh-ccccCCChhhCChHHHHHHHHH
Confidence            699999999999999999999999999999999999999 9999999999999999998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.86  E-value=5.4e-22  Score=138.96  Aligned_cols=77  Identities=26%  Similarity=0.433  Sum_probs=73.0

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      ++++..+.++|++|+.++|+++|+||+|++++++|+++|+++++++|+|.|+.+|| +||++++++|+|++|++++++
T Consensus        15 i~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL-~rq~~~~~~dig~~Ka~~a~~   91 (254)
T COG0476          15 ILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNL-QRQFLFTEADVGKPKAEVAAK   91 (254)
T ss_pred             eeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCccccccc-CceeeecccccCCcHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999999 999999999999999998873

>PRK14851 hypothetical protein; Provisional

Probab=99.85  E-value=5.4e-22  Score=155.27  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|| |||++++.+|+|++|+++++++
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNL-NRQ~~~~~~dvG~~Kv~v~~~~  105 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNV-NRQFGARVPSFGRPKLAVMKEQ  105 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEeccccc-ccCcCcChhhCCCHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999 9999999999999999998764

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.85  E-value=4.6e-22  Score=160.60  Aligned_cols=74  Identities=30%  Similarity=0.500  Sum_probs=71.5

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|| +||||++++|+|++||++++++
T Consensus        13 l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL-~rQf~~~~~dIGk~Kaea~~~~   86 (1008)
T TIGR01408        13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDL-SSNFFLSEDDVGRNRAEAVVKK   86 (1008)
T ss_pred             hcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhC-CCceecchHHcCchHHHHHHHH
Confidence            3799999999999999999999999999999999999999999999999999 9999999999999999998765

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.85  E-value=5.3e-22  Score=160.23  Aligned_cols=74  Identities=27%  Similarity=0.425  Sum_probs=70.6

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|.++|++|++++|+|+|+||+|||++|||+++|+     |+|+|+|+|.|+.+|| +|||||+.+|||++|+++++++
T Consensus       408 l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL-nRQfLf~~~dIGk~Ka~vaa~~  486 (1008)
T TIGR01408       408 VFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL-NRQFLFRPHHIGKPKSYTAADA  486 (1008)
T ss_pred             HcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc-CcCcCCChhHcCcHHHHHHHHH
Confidence            367899999999999999999999999999999999     8999999999999999 9999999999999999998764

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK14852 hypothetical protein; Provisional

Probab=99.85  E-value=1.1e-21  Score=157.59  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=72.0

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ..++.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|| ||||+++.+|+|++|+++++++
T Consensus       320 ~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL-NRQ~l~~~~dIG~~Kaevaa~~  394 (989)
T PRK14852        320 GLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL-NRQYGASIASFGRGKLDVMTER  394 (989)
T ss_pred             hhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc-ccccCCChhhCCChHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999 9999999999999999998865

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=99.85  E-value=7.6e-22  Score=143.13  Aligned_cols=61  Identities=26%  Similarity=0.582  Sum_probs=59.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ||+|+|+||+|+|++|||+++|+++|+|+|+|.|+.+|| +|||+++++|+|++||++++++
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL-nRQflf~~~dVGk~Kaevaa~~   61 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL-NRQFLFRKKHVGKSKAQVAKEA   61 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc-CcCccCChhHcCcHHHHHHHHH
Confidence            699999999999999999999999999999999999999 9999999999999999998764

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.84  E-value=1e-21  Score=134.58  Aligned_cols=80  Identities=18%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593           2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~   81 (84)
                      |...+....+.++|++|++++|+|+|+|++|++++++|+++|+++++++|+|.|+++|| +||+| ..+++|++|+++++
T Consensus         3 ~~~~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~-~~~~iG~~Ka~~~~   80 (200)
T TIGR02354         3 FRRALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNL-NRQQY-KASQVGEPKTEALK   80 (200)
T ss_pred             HHHHHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccc-ccccC-ChhhCCCHHHHHHH
Confidence            44556677889999999999999999999999999999999999999999999999999 99974 66899999999876


Q ss_pred             CC
Q psy9593          82 SR   83 (84)
Q Consensus        82 ~r   83 (84)
                      ++
T Consensus        81 ~~   82 (200)
T TIGR02354        81 EN   82 (200)
T ss_pred             HH
Confidence            53

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2015|consensus

Probab=99.84  E-value=1.6e-21  Score=142.40  Aligned_cols=74  Identities=28%  Similarity=0.445  Sum_probs=69.7

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      ++.+.|..+.+.+.+|+|+|+||+|||++|||+++|.+.++++|.|+++.+|| ||||+|++.|+|++||+++++
T Consensus        28 f~~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL-NRQFLF~~~DiG~pKAqvAA~  101 (422)
T KOG2015|consen   28 FEPSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL-NRQFLFRESDIGEPKAQVAAE  101 (422)
T ss_pred             CCCCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc-hhhhcccccccCchhHHHHHH
Confidence            34557888899999999999999999999999999999999999999999999 999999999999999999875

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.83  E-value=4.7e-21  Score=123.84  Aligned_cols=61  Identities=39%  Similarity=0.637  Sum_probs=58.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|+|+|+|++|++++++|+++|+++|+++|+|.++++|+ +||+|++++|+|++|+++++++
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~   61 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL-NRQFLARQADIGKPKAEVAARR   61 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh-hccccCChhHCCChHHHHHHHH
Confidence            689999999999999999999999999999999999999 9999999999999999998764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG2013|consensus

Probab=99.82  E-value=8.2e-21  Score=143.71  Aligned_cols=71  Identities=21%  Similarity=0.480  Sum_probs=66.9

Q ss_pred             cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593          11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      ..+-++.+..+|||+|||||+|||++|+|++.|+++|+|+|.|+|+.+|| ||||||+.++||++||.++++
T Consensus         3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNL-NRQFLFrkkhVgqsKA~vA~~   73 (603)
T KOG2013|consen    3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNL-NRQFLFRKKHVGQSKATVAAK   73 (603)
T ss_pred             hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccch-hhhheeehhhcCchHHHHHHH
Confidence            35667888999999999999999999999999999999999999999999 999999999999999988764

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.82  E-value=9.2e-21  Score=147.38  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=70.6

Q ss_pred             ccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCcc---Cchhhhcc
Q psy9593           4 AIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNGLKPP   80 (84)
Q Consensus         4 ~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~di---Gk~ka~~~   80 (84)
                      |-++|+.+.   ++|++++|+|+|+||+||+++++|+.+||++|+++|+|.|+.+|+ +||++|+.+|+   |++||+++
T Consensus       325 WRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL-~RQ~Lf~~~Dv~~~Gk~KA~aA  400 (664)
T TIGR01381       325 WRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP-VRQSLSNFEDCLLGGRGKAETA  400 (664)
T ss_pred             hhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc-ccccccchhhhhhcCCcHHHHH
Confidence            446677765   899999999999999999999999999999999999999999999 99999999999   99999998


Q ss_pred             cCC
Q psy9593          81 TSR   83 (84)
Q Consensus        81 ~~r   83 (84)
                      +++
T Consensus       401 a~~  403 (664)
T TIGR01381       401 QKA  403 (664)
T ss_pred             HHH
Confidence            764

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.81  E-value=1.1e-20  Score=142.08  Aligned_cols=61  Identities=30%  Similarity=0.519  Sum_probs=58.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|+|+|+||+|||++|||+++|+     |+|+++|+|.|+.+|| +|||+++++|||++|+++++++
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL-nRQfLf~~~dIGk~Ka~vAa~~   66 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL-NRQFLFRPHDVGKPKSEVAAAA   66 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc-CcCccCChhHcCcHHHHHHHHH
Confidence            69999999999999999999999     9999999999999999 9999999999999999998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK06153 hypothetical protein; Provisional

Probab=99.81  E-value=2.7e-20  Score=138.22  Aligned_cols=77  Identities=19%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcc-cccCCccCc--hhhhcccC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGK--NGLKPPTS   82 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~-~~~~~diGk--~ka~~~~~   82 (84)
                      .....+.+.|++|++++|+|+||||+|+.++.+|+++||++|+|+|+|.|+++|| +||+ +++.+|+|+  +|++++++
T Consensus       162 s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNL-nRQ~gaf~~~DvGk~~~KVevaa~  240 (393)
T PRK06153        162 SSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNA-FRSPGAASIEELREAPKKVDYFKS  240 (393)
T ss_pred             ccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccc-ccccccCCHhHcCCcchHHHHHHH
Confidence            3344456789999999999999999999999999999999999999999999999 9998 568899999  99999876


Q ss_pred             C
Q psy9593          83 R   83 (84)
Q Consensus        83 r   83 (84)
                      |
T Consensus       241 r  241 (393)
T PRK06153        241 R  241 (393)
T ss_pred             H
Confidence            4

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.80  E-value=2.6e-20  Score=131.34  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ..|.++.++|++++|+|+|+||+||+++..|+++|+|+|+|+|.|.|+.+|+ |||.-.-..++|++|+++++||
T Consensus        19 l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~-NRQi~A~~~~iGk~Kv~vm~er   92 (263)
T COG1179          19 LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT-NRQIHALLGDIGKPKVEVMKER   92 (263)
T ss_pred             HcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc-chhhHhhhhhcccHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999 9998888889999999999886

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.80  E-value=3.9e-20  Score=133.82  Aligned_cols=61  Identities=33%  Similarity=0.494  Sum_probs=58.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCc--cCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED--IGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~d--iGk~ka~~~~~r   83 (84)
                      ||+|+|+||+|++++++|+++||++|+++|+|.|+.+|+ +||++|+.+|  +|++||++++++
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL-~RQ~L~~~~D~~iGk~Ka~aaa~~   63 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNP-VRQSLFTFEDCKGGKPKAEAAAER   63 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccC-CcccccccchhhcCccHHHHHHHH
Confidence            699999999999999999999999999999999999999 9999999999  999999998765

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>KOG2014|consensus

Probab=99.78  E-value=1.3e-19  Score=130.78  Aligned_cols=76  Identities=47%  Similarity=0.647  Sum_probs=72.7

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCCC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSRP   84 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r~   84 (84)
                      ..+|.++|++|+++||+++|..|+|+|++|||+++||++++++|+..|.++|+ +.|||++.+++|++||++..+|+
T Consensus        19 RLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~-~~qFli~~~~vg~~raeas~erl   94 (331)
T KOG2014|consen   19 RLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDV-GAQFLISASSVGQTRAEASLERL   94 (331)
T ss_pred             HHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcC-CceeEEchhhhchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999 99999999999999999988763

>KOG2017|consensus

Probab=99.78  E-value=2.3e-20  Score=137.06  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=75.0

Q ss_pred             ccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593           4 AIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus         4 ~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      -+++|+++..+|.+|++++|+||||||+||..+.+|+.+|+|+|-|+|.|.|+.+|+ +||.+++++.+|+.||++++.
T Consensus        50 Qlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNl-hRQVlh~ea~vg~~Ka~sA~~  127 (427)
T KOG2017|consen   50 QLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNL-HRQVLHTEARVGMHKAESAAA  127 (427)
T ss_pred             eeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhH-HHHHhhhhhhhhhHHHHHHHH
Confidence            378899999999999999999999999999999999999999999999999999999 999999999999999988753

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.76  E-value=4.5e-19  Score=125.07  Aligned_cols=64  Identities=22%  Similarity=0.336  Sum_probs=58.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCC-----C-----cEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGV-----K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv-----~-----~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      -++.+|+|+|+||+||+++++|+++|+     |     +|+++|+|.|+++|| +||+ |.+.|+|++|++++++|
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL-nRQl-f~~~dVG~~Ka~v~~~r   82 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV-GRQA-FYPADVGQNKAIVLVNR   82 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh-hccc-CChhHCCcHHHHHHHHH
Confidence            478899999999999999999999863     4     899999999999999 9995 55689999999998875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK07877 hypothetical protein; Provisional

Probab=99.75  E-value=8.4e-19  Score=138.13  Aligned_cols=72  Identities=24%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .++.++|++|++++|+|+|+| +|+.++.+|+++|| |+|+|+|+|.|+.+|| ||| +++..|+|++|+++++++
T Consensus        96 ~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNL-nRq-~~~~~diG~~Kv~~a~~~  168 (722)
T PRK07877         96 KITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNL-NRV-PAGVFDLGVNKAVVAARR  168 (722)
T ss_pred             hCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccccc-ccc-cCChhhcccHHHHHHHHH
Confidence            367899999999999999996 99999999999996 9999999999999999 998 588999999999998865

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.74  E-value=1e-18  Score=117.32  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=56.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|+|+|+||+|++++++|+++|+++++++|+|.|+++|+ +||+++ .+|+|++|+++++++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl-~Rq~~~-~~~vg~~Ka~~~~~~   60 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNL-NRQQYF-LSQIGEPKVEALKEN   60 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcch-hccccc-HhhCCChHHHHHHHH
Confidence            699999999999999999999999999999999999999 999855 689999999988754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2012|consensus

Probab=99.74  E-value=1e-18  Score=138.16  Aligned_cols=73  Identities=40%  Similarity=0.606  Sum_probs=69.6

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .|.+++++|..++|+|.|++|+|.||||||+++||+++||.|+..+..+|| +.|||++++||||+||++..+|
T Consensus        27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DL-ssqf~L~E~DigknRA~as~~~   99 (1013)
T KOG2012|consen   27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDL-SSQFYLSEEDIGKNRAEASVEK   99 (1013)
T ss_pred             ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhh-ccceeeeHHhcCCchHHHHHHH
Confidence            367999999999999999999999999999999999999999999999999 9999999999999999987654

>KOG2012|consensus

Probab=99.73  E-value=2.1e-18  Score=136.51  Aligned_cols=72  Identities=28%  Similarity=0.443  Sum_probs=68.0

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCC-----cEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVK-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~-----~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      +|.+-|+||.+.++++||+|++|||.+||++++|++     .|++.|+|.++.+|| +|||+|+..||||+|+++++.
T Consensus       420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNL-nRQFLFR~~dVgk~KSe~AA~  496 (1013)
T KOG2012|consen  420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNL-NRQFLFRPWDVGKPKSEVAAA  496 (1013)
T ss_pred             hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccc-cceeeccccccCchHHHHHHH
Confidence            567889999999999999999999999999999994     699999999999999 999999999999999998764

>KOG2018|consensus

Probab=99.65  E-value=9.7e-17  Score=117.27  Aligned_cols=72  Identities=19%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      +|+|+|+|++++-|+|+||||+|++++-+|+++|+++|.++|+|.|+.+.| |||......|+|.||+.++++
T Consensus        64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL-NrHs~Atl~DVG~PK~~clkk  135 (430)
T KOG2018|consen   64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL-NRHSCATLADVGTPKVMCLKK  135 (430)
T ss_pred             hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhh-hhhhhhhHhhcCCchHHHHHH
Confidence            578999999999999999999999999999999999999999999999999 999999999999999998875

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.63  E-value=1.3e-16  Score=115.86  Aligned_cols=72  Identities=26%  Similarity=0.284  Sum_probs=65.4

Q ss_pred             cccCC-Cc-HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593           5 IITSS-SI-LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus         5 ~~~~~-~~-~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      ++.|+ .+ .++|++|++++|+   +||+|+.++.+|+. |||+|+++|+|.|+.+|| +  ++|+++|+|++|++++++
T Consensus        59 l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL-~--~L~~~~diG~~K~~~a~~  131 (318)
T TIGR03603        59 LTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAE-I--DLYSKEFILKKDIRDLTS  131 (318)
T ss_pred             hcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhH-H--HHhChhhcCcHHHHHHHH
Confidence            44555 34 6689999999999   99999999999999 999999999999999999 7  899999999999999876


Q ss_pred             C
Q psy9593          83 R   83 (84)
Q Consensus        83 r   83 (84)
                      |
T Consensus       132 ~  132 (318)
T TIGR03603       132 N  132 (318)
T ss_pred             H
Confidence            4

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>KOG2016|consensus

Probab=99.62  E-value=1.4e-16  Score=119.79  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=70.2

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      ..++.++|..|..++||++||+++|+|++|||++.|||+|+++|...|..+|+ +.|||...+++||+||++..+
T Consensus        15 Rlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~-g~nF~~~~~~~GksrA~a~~e   88 (523)
T KOG2016|consen   15 RLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDL-GNNFFLDAKSIGKSRAEATLE   88 (523)
T ss_pred             HHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecch-hhHHHHHHHhhchhHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999 999999999999999988654

>KOG2336|consensus

Probab=99.25  E-value=7.7e-12  Score=90.95  Aligned_cols=70  Identities=21%  Similarity=0.369  Sum_probs=63.6

Q ss_pred             cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593          11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS   82 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~   82 (84)
                      +.+..+|++...|.|+|.||+|+-.|..|.++|||++.++|.|.|+..|. +|-| |.++..|..|++++.+
T Consensus        73 IV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANM-NRLF-f~P~QaGlsKv~AA~~  142 (422)
T KOG2336|consen   73 IVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRLF-FQPDQAGLSKVDAAVQ  142 (422)
T ss_pred             chhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcc-cccc-cCcccccchHHHHHHH
Confidence            35566899999999999999999999999999999999999999999999 9985 6678899999988753

>KOG2337|consensus

Probab=99.21  E-value=5.6e-12  Score=96.85  Aligned_cols=68  Identities=28%  Similarity=0.457  Sum_probs=63.5

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCcc---CchhhhcccCC
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNGLKPPTSR   83 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~di---Gk~ka~~~~~r   83 (84)
                      ..++++.++++.|+|.+||.+|++|...||++||.+|..+|+.+|- -||-+|+-+|-   |++||+++++|
T Consensus       335 Ld~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNP-VRQsLy~FEDc~~~g~~KAe~Aa~r  405 (669)
T KOG2337|consen  335 LDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNP-VRQSLYTFEDCLGGGRPKAETAAQR  405 (669)
T ss_pred             hhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccch-hhhhhhhhhhhhccCCcchHHHHHH
Confidence            4689999999999999999999999999999999999999999999 99999998885   59999998765

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=98.33  E-value=5e-07  Score=70.95  Aligned_cols=49  Identities=16%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCC
Q psy9593          13 PYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA   63 (84)
Q Consensus        13 ~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~   63 (84)
                      +..++.++++|+|+|.|++|+.++.+|+.+|+++|..+|.|.+ ++|+ +|
T Consensus       122 ~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNl-nR  170 (637)
T TIGR03693       122 LKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHAL-DR  170 (637)
T ss_pred             hhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhh-hH
Confidence            4444559999999999999999999999999999999999999 8999 86

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.89  E-value=3.3e-05  Score=49.61  Aligned_cols=45  Identities=20%  Similarity=0.431  Sum_probs=38.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ..+++++|+|+|+||.|..++++|...|+++|++++.+.=...++
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l   52 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEAL   52 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence            368999999999999999999999999999999998754433344

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=97.67  E-value=3.7e-05  Score=52.57  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             CCCcHHHHHHhhcCcEEEEcCChhHHH-HHHHHHHhCCCcE------EEE---eCCccccccCCCCccc
Q psy9593           8 SSSILPYQSRLRATKILLIGVEGVGAE-IAKNIILSGVKSV------CLL---DSGVVTKEDVNTAQFL   66 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG~gg~G~e-iak~L~l~Gv~~i------~l~---D~d~v~~~nl~~~~~~   66 (84)
                      .....+.|+++++++|.|.|.|+.+++ ++.+|..+|++.+      +++   |.+..+.+++ |+|++
T Consensus        93 g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~-n~~~l  160 (193)
T TIGR03882        93 GVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAI-NQRAL  160 (193)
T ss_pred             CCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHH-HHHHH
Confidence            345678899999999999999999988 9999999999988      888   8888888888 88854

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.56  E-value=0.00012  Score=51.03  Aligned_cols=37  Identities=27%  Similarity=0.560  Sum_probs=35.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d   53 (84)
                      .++..+|+|+|+|+.|..+++.|...|+.  +|+++|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            57889999999999999999999999999  99999987

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.52  E-value=0.00015  Score=52.00  Aligned_cols=39  Identities=21%  Similarity=0.469  Sum_probs=34.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ++.++|+|+|+||+|..++..|...|+++|+|+|.+.-.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k  163 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR  163 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            566799999999999999999999999999999886433

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.24  E-value=0.00056  Score=48.96  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++|+|+|+||.+..++..|...|+.+++|++.+.
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            4577999999999999999999999999999998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.11  E-value=0.00088  Score=48.21  Aligned_cols=43  Identities=19%  Similarity=0.407  Sum_probs=36.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++.++|+|+|+||.+..++..|...|+.+|+++|.+.-....+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            4567999999999999999999999999999998764433333

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.10  E-value=0.0012  Score=39.20  Aligned_cols=47  Identities=26%  Similarity=0.368  Sum_probs=39.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF   65 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~   65 (84)
                      +..++++|+|+|..|..++.+|...|..++.++|.|.+-..-- ...+
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~i~~~~-~~~~   67 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDILVTATP-AGVP   67 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEEEcCC-CCCC
Confidence            6789999999999999999999999888999999976654443 4443

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.07  E-value=0.0015  Score=37.99  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=28.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+|+|.|.+|+|+|..|...|. ++++++...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence            68999999999999999999997 588887643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.99  E-value=0.0013  Score=46.73  Aligned_cols=37  Identities=22%  Similarity=0.507  Sum_probs=33.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+++|+|+|+|++|..+++.|...|+.++++++.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5678999999999999999999999999999998754

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.99  E-value=0.0014  Score=47.27  Aligned_cols=36  Identities=19%  Similarity=0.487  Sum_probs=33.3

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|+|+||.+..++..|+..|+.+|+|++.+
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            566799999999999999999999999999999876

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=96.90  E-value=0.0013  Score=45.09  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHH---HhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT   81 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~---l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~   81 (84)
                      -+-.|.++|||-+|--++-+|.   +-|..+|.++|...|++.|+-.+  .. -..+|.+|++-++
T Consensus        17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~-Ga~~GEyKv~Fi~   79 (217)
T COG4015          17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RL-GAKVGEYKVDFIK   79 (217)
T ss_pred             CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--Hh-CCCcchhHHHHHH
Confidence            4557999999999999999998   57999999999999999998222  22 3568999987543

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.84  E-value=0.0021  Score=45.98  Aligned_cols=39  Identities=28%  Similarity=0.538  Sum_probs=33.6

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILS----GV------KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~----Gv------~~i~l~D~d~   54 (84)
                      ++|++.||+++|+|..|.-+++.|+.+    |+      ++|.++|.+-
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G   69 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG   69 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence            479999999999999999999999999    99      8999999863

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.84  E-value=0.0022  Score=46.03  Aligned_cols=37  Identities=22%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+||+|..++..|+..|+.++++++.+.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4567899999999999999999999999999998763

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.83  E-value=0.002  Score=48.59  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=32.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+|+|+|+|++|+.++.+|+..|..+|++.|...-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~   37 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEK   37 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHH
Confidence            589999999999999999999999999999976433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.81  E-value=0.0027  Score=40.60  Aligned_cols=37  Identities=19%  Similarity=0.476  Sum_probs=32.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|+|+|+|++|..+++.|...|..+++++|.+.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            5678999999999999999999998877799998753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.77  E-value=0.0026  Score=43.59  Aligned_cols=37  Identities=14%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|++.+|+|+|.|.+|...++.|...| .++++++++.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~   43 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL   43 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC
Confidence            478899999999999999999999999 4799998754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.76  E-value=0.0038  Score=40.46  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=30.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      .||.|+|+ |.+|+.++..|...++. +|.|+|.+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            48999999 99999999999999985 59999987

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.68  E-value=0.0029  Score=47.86  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+.+++|+|+|+|+.|..++++|...|+.+|+++....-
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~  216 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIE  216 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            467899999999999999999999999999999976543

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.67  E-value=0.0035  Score=45.64  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.+|.|+|+|.+|..++..|+..|+..+.|+|-+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            567999999999999999999999988899999754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.66  E-value=0.0032  Score=41.61  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|++.+|+|+|.|.+|...++.|...|. ++++++++..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~   47 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC   47 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC
Confidence            6788999999999999999999999998 5999987654

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.65  E-value=0.002  Score=46.14  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=36.4

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC----------cEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK----------SVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~----------~i~l~D~d~v   55 (84)
                      ++|++.||+++|+|+.|.-+++.|..++++          +|.++|.+-+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl   70 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL   70 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence            578899999999999999999999999997          8999998643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.64  E-value=0.0037  Score=45.63  Aligned_cols=37  Identities=32%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..||.|+|+|.+|+.++..++..|+..+.|+|-+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~   40 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK   40 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            4567999999999999999999999986699998643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.64  E-value=0.0038  Score=44.96  Aligned_cols=34  Identities=26%  Similarity=0.543  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      .+|.|+|+|++|+.++..|+..|+. ++.++|.+.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3799999999999999999999985 899999743

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.60  E-value=0.0043  Score=44.45  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|+||.+..++..|...|+.+++|++.+.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            35899999999999999999999999999998764

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.54  E-value=0.0042  Score=46.71  Aligned_cols=38  Identities=29%  Similarity=0.504  Sum_probs=34.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+...+|+|+|+|.+|..++++|...|+.+++++|.+.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~  214 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY  214 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            36789999999999999999999999999999998754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.53  E-value=0.0038  Score=45.22  Aligned_cols=40  Identities=33%  Similarity=0.530  Sum_probs=35.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILS----GV------KSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~----Gv------~~i~l~D~d~v   55 (84)
                      ++|++.||+++|+|+.|.-+++.|..+    |+      ++|.++|.+-+
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl   70 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL   70 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence            578899999999999999999999988    99      78999998643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.49  E-value=0.0068  Score=44.42  Aligned_cols=38  Identities=21%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCcccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGVVTK   57 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~v~~   57 (84)
                      ...|+|||+|-+|+.+|..|+.. |..+++++|.+.+..
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~   68 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG   68 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence            44799999999999999999985 876799999876643

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.48  E-value=0.0054  Score=41.91  Aligned_cols=37  Identities=19%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++|+|+|.|.+|..++++|...|. ++++.|.+.
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~   61 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINE   61 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4678899999999999999999999998 588888653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.47  E-value=0.0065  Score=40.50  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      ..+..++|.|+|.|.+|.++++.|...|. ++..+|...-..
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~   72 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE   72 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence            47889999999999999999999999999 588888866543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.46  E-value=0.0054  Score=42.65  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            56889999999999999999999999999899988765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.0059  Score=42.47  Aligned_cols=33  Identities=33%  Similarity=0.571  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|+|+|.+|..+|+.|...|-. ++++|.|.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCH
Confidence            4799999999999999999999986 67776544

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.44  E-value=0.0034  Score=38.48  Aligned_cols=37  Identities=22%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++.+|+|+|.|.+|..=++.|..+|. +++++.++.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            4788999999999999999999999995 799998885

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.42  E-value=0.0055  Score=44.30  Aligned_cols=37  Identities=27%  Similarity=0.493  Sum_probs=34.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|+|+|+|.+|..++++|...|..+++++|.+.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5789999999999999999999998999999998764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.38  E-value=0.0063  Score=43.80  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.||+|+|+|++|+-++-.|..+|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            4689999999999999999999997 59999875

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.37  E-value=0.0075  Score=43.43  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      .+.+|+|||.|-+|..+|..|+..|. +++++|.+.+..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCC
Confidence            46789999999999999999999999 799999888754

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.36  E-value=0.0069  Score=43.88  Aligned_cols=41  Identities=17%  Similarity=0.400  Sum_probs=35.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKED   59 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~n   59 (84)
                      +..+|+|+|+||.+..++..|...|+.+|++++...-....
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~  165 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE  165 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            35889999999999999999999999999999875544333

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.34  E-value=0.0057  Score=42.79  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..|+|||+|..|..+|..|.+.|+. ++|+|...-
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence            4799999999999999999999996 999987654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.33  E-value=0.0085  Score=41.95  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~   34 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG   34 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence            48999999999999999999999 69999998554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.32  E-value=0.0068  Score=43.62  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|-+|+.+|..|+..|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999997 5999998754

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.32  E-value=0.0069  Score=45.56  Aligned_cols=37  Identities=27%  Similarity=0.531  Sum_probs=34.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|+|+|+|.+|..++++|...|+.+++++|.+.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            6789999999999999999999999999999998764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.31  E-value=0.007  Score=44.07  Aligned_cols=34  Identities=24%  Similarity=0.523  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~   52 (84)
                      +..||.|+|+|.+|+.++..|+..|+- +|.|+|-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            346999999999999999999999985 7999996

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.22  E-value=0.0082  Score=44.54  Aligned_cols=37  Identities=14%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+.+++|+|+|+|-+|..++++|...|+.++++....
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt  207 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ  207 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4678999999999999999999999999999998655

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.21  E-value=0.0096  Score=39.94  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             HhhcCcEEEEcCChh-HHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGV-GAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~-G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|.+++|+|+|+|.. |..++++|...|+ ++++++...
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~   78 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT   78 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence            468899999999985 8889999999999 599988653

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.17  E-value=0.0093  Score=42.93  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|.|.+|..+++.|...|. +++++|...
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~  184 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS  184 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678999999999999999999999997 799988653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.15  E-value=0.009  Score=44.31  Aligned_cols=44  Identities=14%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             HhhcCcEEEEcC-ChhHHHHHHHHHH-hCCCcEEEEeCCccccccC
Q psy9593          17 RLRATKILLIGV-EGVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        17 ~l~~~~vlivG~-gg~G~eiak~L~l-~Gv~~i~l~D~d~v~~~nl   60 (84)
                      .+++++|+|+|+ |.+|+++++.|.. .|+.++++++.+.-....+
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L  197 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL  197 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence            467899999998 8999999999985 5899999998754333333

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.15  E-value=0.0076  Score=43.94  Aligned_cols=41  Identities=20%  Similarity=0.404  Sum_probs=32.8

Q ss_pred             EEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCc
Q psy9593          23 ILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQ   64 (84)
Q Consensus        23 vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~   64 (84)
                      |+|-| +|++|+++++.|+..+..+|.++|.+.-...++ .+.
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l-~~~   42 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL-ERE   42 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH-HHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH-HHH
Confidence            67887 899999999999999999999999986665555 444

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.15  E-value=0.01  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999997 599999876

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.14  E-value=0.0088  Score=45.51  Aligned_cols=44  Identities=27%  Similarity=0.515  Sum_probs=37.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      .|+.++|+++|+|-.|.-++++|...|+.+|+++....-....|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~L  218 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEEL  218 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            47788999999999999999999999999999987655544444

>PRK09126 hypothetical protein; Provisional

Probab=96.14  E-value=0.0095  Score=43.25  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            357899999999999999999999995 899987653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.13  E-value=0.011  Score=41.62  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+|+|+|.+|+.++..|..+|. +++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            79999999999999999999995 69999873

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.017  Score=40.14  Aligned_cols=43  Identities=23%  Similarity=0.213  Sum_probs=36.1

Q ss_pred             cHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          11 ILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..-.|.+++.++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus         5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~   48 (245)
T PRK12367          5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSK   48 (245)
T ss_pred             chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCc
Confidence            34569999999999998 689999999999999984 77776653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.12  E-value=0.011  Score=40.64  Aligned_cols=37  Identities=16%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++.+|+|+|.|.+|..-++.|...|. ++++++++.-
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~   43 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE   43 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            778899999999999999999999997 5999988643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.08  E-value=0.012  Score=38.59  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.++|+|..|+.++++|..+|.. ++++|.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccch
Confidence            5899999999999999999999985 88998653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.08  E-value=0.011  Score=43.10  Aligned_cols=32  Identities=25%  Similarity=0.541  Sum_probs=28.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      ||.|+|+|.+|+.+|..|+..|+ +++.|+|-.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            68999999999999999999898 679999963

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.016  Score=45.75  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=45.2

Q ss_pred             CCCcHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593           8 SSSILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      +....+-+.-+.+++|+|-| .|++|+|+++.++..+.++|.++|.|.....++
T Consensus       238 ~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i  291 (588)
T COG1086         238 ALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI  291 (588)
T ss_pred             CCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence            34456677889999999998 678999999999999999999999988766544

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.06  E-value=0.013  Score=42.28  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+|||+|-+|+.+|..|++.|. +++|+|....
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999997 5999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN00203 glutamyl-tRNA reductase

Probab=96.03  E-value=0.0095  Score=46.35  Aligned_cols=37  Identities=16%  Similarity=0.436  Sum_probs=33.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|+|+|+|.+|..++++|...|+.++++++...
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~  300 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE  300 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            5579999999999999999999999999999997753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.00  E-value=0.013  Score=39.35  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=28.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +|.|+|+|..|..++..++.+|.. ++++|.+.-.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHH
Confidence            689999999999999999999985 9999986543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.99  E-value=0.013  Score=44.89  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|-+|+++|..|+..|+. ++|+|...
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence            46899999999999999999999985 99998543

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.96  E-value=0.012  Score=42.77  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|..|+.+|..|...|++ ++|+|....
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCCC
Confidence            45799999999999999999999985 999987643

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.95  E-value=0.012  Score=45.70  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|+|+||+|..+++.|+..|+ ++++++.+
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~  411 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT  411 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567899999999999999999999999 89998764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.94  E-value=0.016  Score=41.94  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=30.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++..|+..|+ .++.++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            69999999999999999999996 7799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06185 hypothetical protein; Provisional

Probab=95.94  E-value=0.015  Score=42.48  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..|+|||+|.+|..+|..|+..|+. ++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            457899999999999999999999985 99999763

>PRK06184 hypothetical protein; Provisional

Probab=95.93  E-value=0.014  Score=44.31  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++..|+|||+|..|..+|..|.+.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            357899999999999999999999996 9999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.91  E-value=0.017  Score=41.64  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|+|||+|-+|+.+|..|+..|. +++++|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            68999999999999999999997 59999987763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08013 oxidoreductase; Provisional

Probab=95.91  E-value=0.013  Score=43.08  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|.+|..+|..|...|++ ++++|...-
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCCC
Confidence            46899999999999999999999995 999987653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.012  Score=44.80  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus         7 ~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141          7 LSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             hhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            344556777899999999999999999999998 79999964

>PRK07236 hypothetical protein; Provisional

Probab=95.87  E-value=0.016  Score=42.34  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=32.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|+|||+|..|..+|..|...|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4567999999999999999999999995 99998754

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.87  E-value=0.012  Score=43.11  Aligned_cols=34  Identities=35%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|..+|..|...|++ ++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence            35799999999999999999999985 99998765

>TIGR02028 ChlP geranylgeranyl reductase

Probab=95.85  E-value=0.015  Score=43.08  Aligned_cols=31  Identities=23%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+|||+|+.|+.+|..|+..|.+ +.++|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            799999999999999999999995 8899865

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.84  E-value=0.017  Score=41.26  Aligned_cols=32  Identities=38%  Similarity=0.544  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .||.|+|+|.+|+.++..++..|..++.++|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999988668999986

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.84  E-value=0.016  Score=42.39  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            79999999999999999999997 599999874

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.83  E-value=0.017  Score=42.09  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      ..||.|+|+|.+|+.++..|+..|.. +|.|+|-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            46999999999999999999999984 69999963

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.83  E-value=0.016  Score=41.58  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|+|+|++|+.++..|..+|. .++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            4689999999999999999999996 588887765

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.82  E-value=0.012  Score=45.02  Aligned_cols=41  Identities=27%  Similarity=0.495  Sum_probs=37.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCccc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVVT   56 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v~   56 (84)
                      ++|+..+|++.|+|..|..+++.|..+|+.  +|.++|..-+-
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l  237 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLL  237 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcc
Confidence            588999999999999999999999999998  99999986443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.80  E-value=0.016  Score=43.05  Aligned_cols=37  Identities=27%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...|+.++|.|||.|.+|..+++||..+|+. +.+.|+
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r   47 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVR   47 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            4689999999999999999999999999995 777764

>PRK06753 hypothetical protein; Provisional

Probab=95.80  E-value=0.019  Score=41.42  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|.+.|+. ++|++.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~   33 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE   33 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            3799999999999999999999996 89998654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.79  E-value=0.016  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|-+|+.+|..|+..|.+ ++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            5899999999999999999999985 99999874

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.78  E-value=0.016  Score=42.00  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHh---CCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILS---GVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~---Gv~~i~l~D~d   53 (84)
                      +..+|+|||+|..|..+|..|.+.   |++ ++|+|..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLP-VALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeCC
Confidence            456899999999999999999998   995 9999975

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.78  E-value=0.019  Score=41.44  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..++|+|+|.|.+|..+++.|...|. +++++|.+.
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~  185 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS  185 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            568999999999999999999999998 799998874

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.02  Score=40.62  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.|+|+|.+|..++.+|+..|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999997 599998764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.02  Score=40.75  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999998 599998754

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=95.75  E-value=0.017  Score=42.16  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....|+|||+|..|..+|..|...|++ ++|+|...
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            346899999999999999999999996 99999764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=95.74  E-value=0.019  Score=41.56  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|..|..+|..|.+.|+ +++++|.+..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            3579999999999999999999998 5999987654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.72  E-value=0.018  Score=42.08  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|...|+. ++|+|....
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   52 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA   52 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence            46899999999999999999999995 999987653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.02  Score=40.64  Aligned_cols=33  Identities=33%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|.|+|+|..|..++.+|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999998 59999865

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.70  E-value=0.02  Score=41.89  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|+|+|..|..+|..|.+.|+ +++|+|...
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence            3589999999999999999999998 499999653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.68  E-value=0.025  Score=36.00  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+|+|+|++|+.++..|..+|.. +++++...
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc
Confidence            78999999999999999998885 99988777

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.67  E-value=0.018  Score=42.36  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|+|+|.+|..+|-.|.+.|+. ++++|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            46899999999999999999999996 8999874

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.67  E-value=0.021  Score=41.51  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|...|+. ++++|...
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCc
Confidence            46899999999999999999999995 99998754

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=95.65  E-value=0.022  Score=41.79  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|+|||+|+.|+..|..|+..|.. +.++|..
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIE-TILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence            589999999999999999999985 8899876

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.62  E-value=0.02  Score=41.17  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+|+|.+|+.++..|..+|. +++++|.+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHH
Confidence            579999999999999999999997 599998754

>PRK06847 hypothetical protein; Provisional

Probab=95.61  E-value=0.025  Score=40.77  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|+. ++|+|...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            46899999999999999999999996 89998653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.59  E-value=0.025  Score=40.39  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            479999999999999999999997 599998643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.58  E-value=0.023  Score=40.67  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+|.|+|+|..|+.+|.+++.+|.. ++++|.+.-.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHH
Confidence            4899999999999999999999984 9999876544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.57  E-value=0.025  Score=39.94  Aligned_cols=32  Identities=31%  Similarity=0.465  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|.|+|+|-+|+.++..|+..|. +++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999998 69999854

>PRK08264 short chain dehydrogenase; Validated

Probab=95.53  E-value=0.026  Score=37.95  Aligned_cols=36  Identities=17%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+++++|.| .|++|.++++.|...|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            5677899998 69999999999999999678888754

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.53  E-value=0.026  Score=40.07  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 599998753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.53  E-value=0.024  Score=41.64  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|+|+|.+|..+|-.|.+.|++ ++|+|..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLD-VTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence            46799999999999999999999975 9999987

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.53  E-value=0.024  Score=38.23  Aligned_cols=36  Identities=25%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|...|.. +++++...
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~   39 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE   39 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5678999998 689999999999999986 88887654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.52  E-value=0.026  Score=40.14  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.|+|+|-+|+.++.+|+.+|. +++++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 599998754

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=95.52  E-value=0.032  Score=42.01  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||.|-+|..+|..|+..  |. +++|+|.+.+.
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~g   61 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLCG   61 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCccc
Confidence            46899999999999999999998  65 69999988764

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=95.51  E-value=0.022  Score=41.91  Aligned_cols=33  Identities=30%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      .||.|+|+|.+|+.++..|+.-+++ ++.|+|-.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            4799999999999999999999999 99999865

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.50  E-value=0.025  Score=41.83  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|++++|.|||.|..|..++++|..+|+ ++.+.+..
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~   49 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLRE   49 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46888999999999999999999999998 46665543

>PRK08244 hypothetical protein; Provisional

Probab=95.49  E-value=0.028  Score=42.53  Aligned_cols=34  Identities=29%  Similarity=0.572  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..|+|||+|.+|..+|..|.+.|+. ++|+|...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~~   35 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVK-TCVIERLK   35 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            36799999999999999999999995 99998653

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.48  E-value=0.023  Score=40.98  Aligned_cols=31  Identities=35%  Similarity=0.605  Sum_probs=27.7

Q ss_pred             EEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      |.|+|+|.+|+.++..|+..|+ .+++++|.+
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~   32 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            5799999999999999999897 569999974

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.48  E-value=0.029  Score=39.63  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++++|+|+|++|..+++.|...|. +++++|.+
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~  149 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT  149 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46789999999999999999999996 79998765

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.48  E-value=0.025  Score=41.44  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|..++|.|+|.|.+|.++++.|...|. ++..+|..
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  182 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT  182 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            36899999999999999999999999998 58888864

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.47  E-value=0.027  Score=41.86  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|+|+|+|.+|..+++.|...|+ +++++|.+.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~  200 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI  200 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            567889999999999999999999999 599998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02602 lactate dehydrogenase

Probab=95.47  E-value=0.025  Score=41.95  Aligned_cols=33  Identities=33%  Similarity=0.601  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .||.|+|+|.+|+.++..|+..|+ .+|.|+|-.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~   71 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN   71 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            699999999999999999999998 579999963

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.46  E-value=0.028  Score=40.69  Aligned_cols=32  Identities=34%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+|.|+|+|-+|+.+|..|+..|..++.++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            58999999999999999999998867999997

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.46  E-value=0.027  Score=41.33  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|+.++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~  178 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY  178 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5788999999999999999999999998 48888864

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.45  E-value=0.024  Score=41.19  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=27.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .||+|+|+|++|+-.+..|.++| ..++++-.
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R   31 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVR   31 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEec
Confidence            48999999999999999999999 66777644

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.42  E-value=0.03  Score=36.82  Aligned_cols=30  Identities=23%  Similarity=0.513  Sum_probs=23.4

Q ss_pred             EEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          24 LLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        24 livG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|||+|..|-.++..|...|+..++++|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~   30 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN   30 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence            699999999999999999999879999965

...

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.41  E-value=0.025  Score=40.56  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+|||+|..|..+|..|.+.|+ +++|+|...-
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence            38999999999999999999998 5999988754

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.41  E-value=0.03  Score=41.03  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|.+|+.+|..|+..  |. +++|+|...
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            6899999999999999999998  86 699999864

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.41  E-value=0.03  Score=42.83  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|+|+|+|-+|+++|..|+..|+. ++|++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence            4799999999999999999999985 9999853

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.40  E-value=0.045  Score=33.29  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=27.4

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      |+|+|.|.+|.++++.|...+ -.++++|.+.-.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH
Confidence            689999999999999999955 469999988633

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.39  E-value=0.024  Score=41.22  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|+.+|..|...|++ ++++|...
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFS-VAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence            35899999999999999999999985 99998764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.37  E-value=0.026  Score=41.35  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVK------SVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~   52 (84)
                      ..||.|+|+ |.+|+.++..|+..|+-      ++.|+|-
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            468999999 99999999999988874      5999987

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12862 malic enzyme; Reviewed

Probab=95.37  E-value=0.019  Score=46.66  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=36.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|..|..+++.|...|+.  +|.++|..-+
T Consensus       189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~  230 (763)
T PRK12862        189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV  230 (763)
T ss_pred             CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence            578999999999999999999999999995  8999997543

>PRK06834 hypothetical protein; Provisional

Probab=95.36  E-value=0.03  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....|+|||+|.+|..+|..|.+.|+. ++++|...
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~   36 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRP   36 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            356899999999999999999999996 89998654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.35  E-value=0.032  Score=39.96  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..+|+|+|+|.+|..+++.|...|. .+++++|.+.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            3589999999999999999999996 4788888753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.34  E-value=0.022  Score=37.48  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=29.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+++++|+|||.|-.+.+++.+|+..| .+++++-.
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R  198 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTR  198 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEec
Confidence            3678899999999999999999999999 78988743

...

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.32  E-value=0.027  Score=40.71  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSG-VKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~G-v~~i~l~D~d~   54 (84)
                      .|+|||+|..|+.+|..|.+.| +. ++++|...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIK-IALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence            3899999999999999999999 85 89998764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06126 hypothetical protein; Provisional

Probab=95.31  E-value=0.034  Score=42.53  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|.+|..+|-.|.+.|+. ++|+|...
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~~   40 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVD-SILVERKD   40 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            46899999999999999999999996 89998653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.30  E-value=0.026  Score=41.28  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      |++++|.|+|+|..|..++++|..+|+. +.+.++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~~   34 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGLR   34 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEEC
Confidence            4678999999999999999999999985 555443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.30  E-value=0.033  Score=42.28  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|..|+..|..|+..|+. +.++|...
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~-VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIE-TFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            5799999999999999999999996 88988653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.30  E-value=0.035  Score=40.65  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence            46899999999999999999999996 88888765

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.29  E-value=0.037  Score=40.78  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=30.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|...|..|...|+. ++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGID-NVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCC-EEEEECCC
Confidence            46899999999999999999999996 89998765

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.027  Score=42.50  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=34.0

Q ss_pred             cHHHHH-HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          11 ILPYQS-RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        11 ~~~~q~-~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++..|. .++..+|+|+|+|++|.++|..|...|.. ++++|..
T Consensus         6 ~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~   48 (480)
T PRK01438          6 GLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG   48 (480)
T ss_pred             chhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            344442 45677999999999999999999999985 9999854

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.29  E-value=0.033  Score=40.01  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|..|+.++++|...|. +++++|.+.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4689999999999999999999997 589998653

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.28  E-value=0.033  Score=38.89  Aligned_cols=36  Identities=28%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .++.++|+|.|.|.+|..+++.|...|..-+.+.|.
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999999999999999999999876657776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK07045 putative monooxygenase; Reviewed

Probab=95.28  E-value=0.033  Score=40.60  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|.+.|+. ++|+|...-
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~-v~v~E~~~~   39 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHS-VTVVERAAR   39 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCc-EEEEeCCCc
Confidence            35899999999999999999999995 999986653

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.28  E-value=0.036  Score=39.11  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            379999999999999999999996 4888876

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=95.27  E-value=0.035  Score=43.01  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            4679999999999999999999998 59999976543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=95.27  E-value=0.037  Score=37.97  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=29.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+|||+|..|..+|..|...|++ ++++|.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence            589999999999999999999995 999987754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.26  E-value=0.031  Score=42.59  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=33.5

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +..++|+|+|+|.+|..+++.|...|. +++++|.+...
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~r  247 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPIC  247 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchh
Confidence            478899999999999999999999999 59999876543

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=95.23  E-value=0.032  Score=40.79  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          22 KILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ||.|+|+ |.+|+.++..|+..|+ .++.|+|-..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999998887 5799999755

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.23  E-value=0.034  Score=42.65  Aligned_cols=36  Identities=17%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|+|+|++|..+++.|...|. +++++|.+.
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~  365 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTK  365 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            567899999999999999999999998 799987653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.22  E-value=0.035  Score=39.84  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|-.|+.++.+|+..|. +++++|.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            379999999999999999999998 599999864

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.22  E-value=0.031  Score=42.02  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|..++|.|+|+|.+|+.+++.|...|+. +..+|+.
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp~  148 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDPP  148 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCc
Confidence            57899999999999999999999999995 7778863

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.21  E-value=0.034  Score=36.29  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=28.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|..|+.+|..|+..| .+++|++.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence            6899999999999999999999 5799997764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02928 oxidoreductase family protein

Probab=95.20  E-value=0.032  Score=41.21  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|..++|.|+|.|.+|.++++.|...|. ++..+|..
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            5888999999999999999999999998 58888763

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.20  E-value=0.037  Score=40.61  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.|+|+|-+|+.++.+++.+|.. ++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999985 99999754

>PRK05868 hypothetical protein; Validated

Probab=95.19  E-value=0.039  Score=40.47  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+|+|..|..+|..|...|+. ++++|...
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Confidence            4799999999999999999999996 99998753

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.19  E-value=0.042  Score=36.74  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|+|+ |++|..+++.|+..|. ++++++.+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~   61 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD   61 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            457789999995 9999999999999885 78988764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.035  Score=41.41  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578899999999999999999999998 599998864

>PLN00106 malate dehydrogenase

Probab=95.18  E-value=0.037  Score=40.65  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          19 RATKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ...||.|+|+ |.+|+.++..|+..+. .++.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4568999998 9999999999998887 5799999766

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.17  E-value=0.037  Score=39.97  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             HhhcCcEEEEcCCh-hHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEG-VGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg-~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++|+|+|.|+ +|..++..|...|. .+++++...
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t  193 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT  193 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            46788999999999 99999999999999 899998744

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.17  E-value=0.037  Score=42.02  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=32.4

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|+|+|.+|..+++.+...|. +++++|.+..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~  236 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPI  236 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            467899999999999999999999999 5888887644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.17  E-value=0.032  Score=41.90  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..++|.|+|+|.+|..+++.|...|+. +..+|+.
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp~  148 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDPP  148 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCc
Confidence            57889999999999999999999999995 7788863

>PRK07588 hypothetical protein; Provisional

Probab=95.17  E-value=0.04  Score=40.15  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...|+. +++++...
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~~   33 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHE-PTLIERAP   33 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCc-eEEEeCCC
Confidence            3799999999999999999999996 99998653

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=95.12  E-value=0.041  Score=42.23  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....|+|||+|..|..+|..|...|+. ++++|...
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~   56 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD   56 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            456899999999999999999999995 88988654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.11  E-value=0.035  Score=40.47  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|+|+|..|..+|..|.+.|+. ++|+|...
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIK-TTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCe-EEEecCCC
Confidence            4699999999999999999999995 99999754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.11  E-value=0.03  Score=42.73  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ......+|+|||+|..|-..|+.|...|. ++++++..
T Consensus         6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~   42 (461)
T PLN02172          6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE   42 (461)
T ss_pred             cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence            35567899999999999999999999998 58888753

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.09  E-value=0.044  Score=38.95  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++.+|...|.. ++++|.+.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHD-VTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCH
Confidence            3799999999999999999999985 89998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.08  E-value=0.036  Score=39.68  Aligned_cols=31  Identities=39%  Similarity=0.522  Sum_probs=27.9

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |.|+|+|.+|+.++..|+..|..+++++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999886689999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.06  E-value=0.051  Score=37.52  Aligned_cols=32  Identities=16%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+|||+|..|.+.|..|...|.. ++++|...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence            699999999999999999999985 99999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.06  E-value=0.043  Score=40.46  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v   55 (84)
                      ++.+|+|||.|..|.+++..|...|. .+|+++|.+..
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~   39 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH   39 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            56789999999999999999999887 47999987643

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.06  E-value=0.04  Score=40.15  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++|.|+|.|.+|.++++.|...|+. +..+|..
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~  168 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRS  168 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            47789999999999999999999999984 7777753

>PRK12861 malic enzyme; Reviewed

Probab=95.06  E-value=0.026  Score=45.91  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|..|..+++.|...|+.  +|.++|..-+
T Consensus       185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl  226 (764)
T PRK12861        185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV  226 (764)
T ss_pred             CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence            578999999999999999999999999996  8999997543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.05  E-value=0.046  Score=39.44  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|..|+.++.+|+..|. +++++|.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            479999999999999999999997 499998853

>PRK06194 hypothetical protein; Provisional

Probab=95.04  E-value=0.031  Score=38.74  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|. +++++|.+
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~   39 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ   39 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567899998 78999999999999998 48888764

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.04  E-value=0.031  Score=45.42  Aligned_cols=39  Identities=18%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~   54 (84)
                      ++|++.||++.|+|..|..+++.|...|+.  +|.++|..-
T Consensus       181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  221 (752)
T PRK07232        181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG  221 (752)
T ss_pred             CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            578999999999999999999999999995  899999753

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=95.04  E-value=0.042  Score=40.18  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=29.6

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .+|.|+|+ |.+|+.++..|+..|+ .++.|+|-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            37999999 9999999999998887 679999976

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.03  Score=38.18  Aligned_cols=38  Identities=26%  Similarity=0.471  Sum_probs=32.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|..+++.|+..|...+.+++.+.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            46778899998 689999999999999987788887653

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.00  E-value=0.057  Score=41.43  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~   41 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLA   41 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence            45799999999999999999999996 9999876553

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=95.00  E-value=0.041  Score=39.98  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+|||+|..|..+|..|...|. +++|+|...
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~-~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL-RVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            38999999999999999999999 599999653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07190 hypothetical protein; Provisional

Probab=95.00  E-value=0.046  Score=41.80  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|.+|..+|-.|.+.|+. +.|+|...
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~   38 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD   38 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence            5799999999999999999999996 89998764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=94.98  E-value=0.048  Score=41.82  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....|+|||+|..|..+|..|.+.|+. ++++|...
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~-v~v~Er~~   43 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVR-VLVLERWP   43 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            457899999999999999999999995 88888654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.98  E-value=0.048  Score=39.25  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++..|...|. ++++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence            69999999999999999999995 588998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.96  E-value=0.05  Score=39.95  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|...|+. ++|++...
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~   35 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQ   35 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            37899999999999999999999995 99998653

>cd00704 MDH Malate dehydrogenase

Probab=94.94  E-value=0.044  Score=40.15  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCc------EEEEeCCc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKS------VCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~------i~l~D~d~   54 (84)
                      .||+|+|+ |.+|+.++..|+..|+-.      +.|+|-..
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~   41 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP   41 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence            37999998 999999999999888755      99998753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.93  E-value=0.05  Score=38.53  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|..+++.|...|. +++++|.+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999997 589998753

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.93  E-value=0.042  Score=40.33  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCC-C-----cEEEEeC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGV-K-----SVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv-~-----~i~l~D~   52 (84)
                      ..||.|+|+ |.+|+.++..|+..|+ +     +|.|+|-
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   42 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI   42 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence            468999998 9999999999999887 4     6999987

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=94.91  E-value=0.052  Score=40.65  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|+.|+.+|..|+..|.+ +.++|...
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~-V~llEr~~   38 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQ-VLVIERGN   38 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCe-EEEEEcCC
Confidence            36899999999999999999999995 88998654

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.90  E-value=0.043  Score=40.28  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~v   55 (84)
                      ++..||.|+|+ |.+|+.++..|+..+. .++.|+|-+..
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~   45 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA   45 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC
Confidence            45669999998 9999999999987776 47999998543

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.89  E-value=0.038  Score=38.20  Aligned_cols=38  Identities=16%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.++++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~   42 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS   42 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            3457888999998 589999999999999975 8887754

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.89  E-value=0.064  Score=36.45  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=33.5

Q ss_pred             HHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          13 PYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        13 ~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +....+++++++|.| .|++|..+++.|...|.. +.+++.+
T Consensus         4 ~~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~   44 (264)
T PRK12829          4 DLLKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVS   44 (264)
T ss_pred             hHhhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence            344567889999998 799999999999999985 8888764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.89  E-value=0.052  Score=37.07  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++++++++|.| .|++|..+++.|...|. ++.+++...
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~   46 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA   46 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            356788999998 79999999999999998 588877643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.86  E-value=0.073  Score=31.40  Aligned_cols=39  Identities=23%  Similarity=0.503  Sum_probs=29.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC--CcEEEE-eCCccccccC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV--KSVCLL-DSGVVTKEDV   60 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv--~~i~l~-D~d~v~~~nl   60 (84)
                      ||.++|+|.+|..+++.|...|.  .++.++ +.+.-...++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~   42 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAEL   42 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHH
Confidence            68999999999999999999993  457755 6554443333

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07538 hypothetical protein; Provisional

Probab=94.84  E-value=0.056  Score=39.88  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...|+. ++++|...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIE-VVVFEAAP   33 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc-EEEEEcCC
Confidence            3799999999999999999999995 99998754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=94.81  E-value=0.086  Score=37.22  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ......|+|||+|+.|...|..|+..|.+ +.++|...
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~~   58 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERKL   58 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Confidence            34567899999999999999999999995 88888643

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=94.79  E-value=0.052  Score=42.90  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ..|+|||.|.+|+.+|..|+..|.+ +.|+|.+.+.
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a  106 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFS  106 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccC
Confidence            5799999999999999999999995 9999887554

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.76  E-value=0.066  Score=35.99  Aligned_cols=36  Identities=25%  Similarity=0.508  Sum_probs=30.8

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.+++|.|+ |++|..+++.|...|. ++.++|.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            56789999995 9999999999999997 488887654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=94.75  E-value=0.063  Score=34.07  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.++|.| .+++|.++++.|+..|-..+.+++..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            3578887 89999999999999999888888776

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.065  Score=36.36  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~   48 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRS   48 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            36788999999 699999999999999984 7777654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=94.73  E-value=0.052  Score=42.94  Aligned_cols=34  Identities=12%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d   53 (84)
                      +...|+|||+|..|..+|-.|++ .|+. ++|+|..
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~~   65 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVERK   65 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEcC
Confidence            46789999999999999999999 6996 8999864

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.73  E-value=0.068  Score=36.26  Aligned_cols=38  Identities=32%  Similarity=0.426  Sum_probs=32.1

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~   46 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE   46 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence            356788999998 78999999999999998 688887654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.72  E-value=0.063  Score=41.54  Aligned_cols=36  Identities=17%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +-|++|+|+|.+|.++++.|...|.. ++++|.|.-.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~  452 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTR  452 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHH
Confidence            47999999999999999999999985 8999987543

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.72  E-value=0.045  Score=43.31  Aligned_cols=39  Identities=36%  Similarity=0.540  Sum_probs=34.7

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHH-----hCC------CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIIL-----SGV------KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l-----~Gv------~~i~l~D~d~   54 (84)
                      ++|++.||+++|+|+.|.-+++.|+.     .|+      ++|.++|.+-
T Consensus       317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G  366 (581)
T PLN03129        317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG  366 (581)
T ss_pred             CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence            57889999999999999999999987     477      6899999864

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.042  Score=37.83  Aligned_cols=37  Identities=22%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|+..|. +++++|.+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            36678999998 59999999999999998 588887653

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.70  E-value=0.051  Score=36.61  Aligned_cols=37  Identities=30%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++.+++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~   41 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE   41 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            35667899998 77999999999999998 688887653

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=94.68  E-value=0.06  Score=39.80  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=28.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...|+|||+|+.|+..|..|+..|+. +.++|.
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~-VlvlEk   34 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLD-VLVLEK   34 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCe-EEEEec
Confidence            45799999999999999999999964 777776

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.68  E-value=0.055  Score=36.93  Aligned_cols=37  Identities=27%  Similarity=0.513  Sum_probs=30.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|.+.-
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~   41 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPA   41 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHH
Confidence            5677899998 699999999999999984 778776543

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.061  Score=36.72  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~   41 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP   41 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            46778999999 59999999999999997 477777644

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.055  Score=36.92  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=31.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence            46778999998 689999999999999985 77777643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.65  E-value=0.07  Score=36.35  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|+..|. ++.+.|.+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            36778999998 69999999999999998 488887653

>KOG0685|consensus

Probab=94.62  E-value=0.067  Score=41.59  Aligned_cols=46  Identities=22%  Similarity=0.244  Sum_probs=38.5

Q ss_pred             cCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593           7 TSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus         7 ~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+...-.+.++.+++||+|||+|-.|-..|..|...|...++|+..
T Consensus         8 ~~~~~~~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa   53 (498)
T KOG0685|consen    8 ALSGTGSGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA   53 (498)
T ss_pred             hhcccchhhhccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEe
Confidence            3444456677888999999999999999999999999988888854

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=94.62  E-value=0.08  Score=39.95  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=29.3

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCCc------EEEEeCCc
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVKS------VCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~------i~l~D~d~   54 (84)
                      ..||.|+|+ |.+|+.++..|+..|+-.      ++|+|-|.
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~   85 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER   85 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc
Confidence            469999999 999999999999999854      66775554

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=94.62  E-value=0.055  Score=39.64  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeC
Q psy9593          22 KILLIGV-EGVGAEIAKNIILSGVK------SVCLLDS   52 (84)
Q Consensus        22 ~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~   52 (84)
                      ||+|+|+ |.+|+.++..|+..|+-      ++.|+|-
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~   38 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI   38 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence            6899999 99999999999998885      4999986

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.61  E-value=0.07  Score=38.28  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=29.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhC-CCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSG-VKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~G-v~~i~l~D~d~   54 (84)
                      ++.++|+|.| +|++|+++++.|...| ..+++++|.+.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~   40 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE   40 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence            3567899998 6899999999999887 45788887654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK13529 malate dehydrogenase; Provisional

Probab=94.56  E-value=0.051  Score=42.86  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHH----hCC------CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIIL----SGV------KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l----~Gv------~~i~l~D~d~   54 (84)
                      ++|++.||+++|+|+.|.-+++.|+.    .|+      ++|.++|.+-
T Consensus       291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G  339 (563)
T PRK13529        291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG  339 (563)
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            57889999999999999999999987    599      5899999863

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.56  E-value=0.065  Score=44.91  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      -..++|+|||+|+.|-++|..|++.|.. ++++|...+++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~g  419 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITL  419 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccc
Confidence            3678999999999999999999999985 99999865543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.54  E-value=0.072  Score=35.99  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence            5678999999 58999999999999998 477777543

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02985 squalene monooxygenase

Probab=94.54  E-value=0.068  Score=41.29  Aligned_cols=38  Identities=18%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +-....|+|||+|..|+.+|..|...|.+ ++++|.+..
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~-V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRR-VHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCe-EEEEECcCC
Confidence            34556899999999999999999999985 999997643

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.52  E-value=0.069  Score=36.42  Aligned_cols=36  Identities=25%  Similarity=0.520  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence            46778899998 68999999999999997 48888764

>PLN02256 arogenate dehydrogenase

Probab=94.50  E-value=0.075  Score=38.60  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +-+..+|.|+|+|.+|..+++.|...|. +++.+|.+.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~   69 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD   69 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence            4466799999999999999999999886 588888764

>PRK06996 hypothetical protein; Provisional

Probab=94.49  E-value=0.063  Score=39.46  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      ..|+|+|+|.+|..+|-.|...|+   -+++++|...
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            579999999999999999999986   2599998764

>PLN02253 xanthoxin dehydrogenase

Probab=94.47  E-value=0.072  Score=36.86  Aligned_cols=36  Identities=31%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            56778899998 78999999999999997 48888754

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=94.46  E-value=0.056  Score=42.65  Aligned_cols=39  Identities=31%  Similarity=0.385  Sum_probs=34.7

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHH----HhCC------CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNII----LSGV------KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~----l~Gv------~~i~l~D~d~   54 (84)
                      ++|++.||++.|+|+.|.-+++.|+    ..|+      ++|.++|.+-
T Consensus       293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G  341 (559)
T PTZ00317        293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG  341 (559)
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            5789999999999999999999988    4799      7899999863

>PLN02494 adenosylhomocysteinase

Probab=94.45  E-value=0.074  Score=41.25  Aligned_cols=37  Identities=16%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..++|+|+|.|.+|..+++.+...|. +++++|.+..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~  288 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI  288 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            578899999999999999999999999 5888877654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.43  E-value=0.084  Score=40.33  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ..|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~-V~LlEk~d~~   41 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLK-VLLCEKDDLA   41 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCc-EEEEECCCCC
Confidence            5799999999999999999999985 8999876543

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.41  E-value=0.085  Score=37.18  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      +|.|+|+|.+|..++..|...|.. +++.+|.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~   34 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN   34 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            699999999999999999999963 57777764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.41  E-value=0.09  Score=35.96  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             cEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+| +|.+|+.+++.|+..| .++++++.+.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH
Confidence            699997 8999999999999999 4688887643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR00292 thiazole biosynthesis enzyme

Probab=94.41  E-value=0.13  Score=36.30  Aligned_cols=38  Identities=21%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .......|+|||+|+.|...|..|+..|.+ +.+++...
T Consensus        17 ~~~~~~DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~~   54 (254)
T TIGR00292        17 LDYAESDVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSL   54 (254)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            344678999999999999999999999975 88887754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12828 short chain dehydrogenase; Provisional

Probab=94.41  E-value=0.072  Score=35.42  Aligned_cols=37  Identities=24%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|..+++.|...|.. +.+++.+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCCh
Confidence            35678999998 699999999999999985 88887643

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=94.40  E-value=0.076  Score=39.06  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHH--HHhCCCcEEEEeCCccc
Q psy9593          23 ILLIGVEGVGAEIAKNI--ILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        23 vlivG~gg~G~eiak~L--~l~Gv~~i~l~D~d~v~   56 (84)
                      |+|||+|..|..+|..|  ...|. ++.++|...-.
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~   36 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKP   36 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccc
Confidence            78999999999999999  77776 59999876544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05442 malate dehydrogenase; Provisional

Probab=94.40  E-value=0.068  Score=39.29  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCC-C-----cEEEEeC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGV-K-----SVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv-~-----~i~l~D~   52 (84)
                      ..||.|+|+ |.+|+.++..|+..|+ +     +|.|+|-
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            459999998 9999999999998887 4     6999986

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=94.39  E-value=0.12  Score=36.63  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          13 PYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        13 ~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+....+..|+|+|+|+.|...|+.|+..|.+ +.+++..
T Consensus        10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~k-V~v~E~~   49 (230)
T PF01946_consen   10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLK-VAVIERK   49 (230)
T ss_dssp             HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS--EEEEESS
T ss_pred             HHHHhhccCCEEEECCChhHHHHHHHHHHCCCe-EEEEecC
Confidence            334456778999999999999999999999996 8888764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.38  E-value=0.069  Score=38.83  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSG--VKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~G--v~~i~l~D~d~   54 (84)
                      ..|+|||+|..|..+|..|.+.|  + +++|+|...
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~   36 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAP   36 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCC
Confidence            46999999999999999999997  5 589998754

>PLN02463 lycopene beta cyclase

Probab=94.37  E-value=0.063  Score=40.88  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.....|+|||+|..|..+|..|+..|++ +.++|...
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~-V~liE~~~   61 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLS-VCCIDPSP   61 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCCe-EEEeccCc
Confidence            44456899999999999999999999985 99998854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.36  E-value=0.075  Score=40.33  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..++|+|+|+|.+|..+++.+...|.. ++++|.|..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~  229 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI  229 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh
Confidence            5788999999999999999999999995 888876654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.34  E-value=0.071  Score=38.77  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|..++|.|+|.|.+|.++++.|...|+ ++..+|..
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            46889999999999999999998887788 48888864

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.33  E-value=0.08  Score=41.02  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+..++|+|+|.|.+|..+++.|...|. +++++|.+..
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~  288 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPI  288 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4789999999999999999999999999 5888876643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.33  E-value=0.081  Score=39.30  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+++|+|+|.+|..+++.|...|.. ++++|.+.
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~  264 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP  264 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            468899999999999999999998885 89997764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.33  E-value=0.064  Score=36.03  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++|+|.| .|++|.++++.|...|. ++.+++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35678899998 79999999999999997 47777654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.32  E-value=0.078  Score=40.75  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|.|||+|-+|+.++.+|+.+|. .++++|.+.-
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence            479999999999999999999998 5999988543

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.087  Score=35.57  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~   40 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINA   40 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            35667899999 59999999999999997 588887653

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.30  E-value=0.087  Score=35.30  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|.| .|++|..+++.|...|. ++.+++.+.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~   39 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNE   39 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678999998 58899999999999998 477776643

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.29  E-value=0.12  Score=29.43  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=25.4

Q ss_pred             EEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          25 LIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        25 ivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |||+|..|...+..|...|. +++|+|...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence            79999999999999999999 699998754

...

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.29  E-value=0.1  Score=38.78  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v   55 (84)
                      ++|+|||+|..|.++|..|.+.|- .+++|+|....
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            379999999999999999998874 37999997653

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.29  E-value=0.068  Score=36.84  Aligned_cols=36  Identities=19%  Similarity=0.487  Sum_probs=30.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            36678999999 58999999999999998 58888764

>PRK07680 late competence protein ComER; Validated

Probab=94.29  E-value=0.091  Score=37.01  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++..|...|.   ..++++|.+.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~   37 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP   37 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence            68999999999999999999984   4688888754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.28  E-value=0.088  Score=39.71  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|.|..|.+.|..|.+.|. +++++|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            45789999999999999999999998 59999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.27  E-value=0.077  Score=40.87  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ...|+|||+|.+|+.+|..|...+- .+|+++|.+.
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4579999999999999999998643 3799999764

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.27  E-value=0.076  Score=38.86  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeCC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVK------SVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~d   53 (84)
                      ..+|+|+|+ |.+|+.++..|+..++-      ++.++|-.
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~   42 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP   42 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence            357999998 99999999999987764      79999873

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.094  Score=35.72  Aligned_cols=36  Identities=28%  Similarity=0.547  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            5678899998 68999999999999998 477877653

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.25  E-value=0.089  Score=37.65  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=28.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.++|+|..|+.++++|...|. +++++|.+.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            79999999999999999999997 488888753

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.06  Score=36.32  Aligned_cols=36  Identities=31%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+.++++|.| .|++|.++++.|...|.. +.+++...
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~   40 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQ   40 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCh
Confidence            5678999998 699999999999999984 88887654

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.093  Score=35.60  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++|+|.| .|++|.++++.|...|. ++.++|.+
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36678899998 89999999999999997 68888764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.22  E-value=0.082  Score=41.71  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|..|-..|..|.+.|.. ++++|..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999986 9999864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=94.22  E-value=0.085  Score=36.21  Aligned_cols=35  Identities=29%  Similarity=0.641  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|..
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~   38 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKS   38 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678899998 689999999999999985 7777754

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.21  E-value=0.093  Score=35.97  Aligned_cols=34  Identities=15%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~   52 (84)
                      +..||.|+|+|..|..+++.|...|.   ..+.+++.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~   39 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR   39 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence            35789999999999999999998873   34666654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.21  E-value=0.088  Score=35.08  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=30.0

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+++|+|.| .|++|.++++.|...|.. +.+++.+.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~   39 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNE   39 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            3457899998 699999999999999986 88887653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.21  E-value=0.074  Score=38.73  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..|..++|.|+|.|.+|.++++.|...|.. +..+|.
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~  179 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL  179 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence            368999999999999999999999988884 666664

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.20  E-value=0.096  Score=39.75  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|.-|-.++..|..+|+..+.++|..
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~   41 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR   41 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            45789999999999999999999999988888875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.18  E-value=0.079  Score=41.26  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+||+|||+|..|-..+|+|...|+. +++++.
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~   32 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEK   32 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-E-EEEEES
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCC-CeEEec
Confidence            37999999999999999999999994 777763

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08226 short chain dehydrogenase; Provisional

Probab=94.18  E-value=0.082  Score=36.11  Aligned_cols=37  Identities=30%  Similarity=0.547  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.+++++|.| .|++|.++++.|+..|.. +.+++...
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~   40 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDISP   40 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCH
Confidence            46778999998 889999999999999985 88887653

>PRK07574 formate dehydrogenase; Provisional

Probab=94.18  E-value=0.077  Score=39.93  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|..++|.|+|.|.+|.++++.|...|+. +..+|...
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCC
Confidence            358889999999999999999999999984 88888643

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=94.18  E-value=0.092  Score=37.56  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      .++.++|.|-|.|.+|..+++.|...|.+-+.+.|
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            46789999999999999999999999987665766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.11  Score=34.97  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.|+ |++|..+++.|...|. ++.+++.+
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~   42 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN   42 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56789999996 8999999999999998 58888764

>PRK07478 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.093  Score=35.71  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.+++..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~   39 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARR   39 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5667899998 689999999999999984 8877654

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.092  Score=35.87  Aligned_cols=36  Identities=36%  Similarity=0.567  Sum_probs=30.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            46778899998 689999999999999985 8887764

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.11  Score=35.32  Aligned_cols=35  Identities=31%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+++|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~   42 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRR   42 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678999998 699999999999999984 7777654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.16  E-value=0.084  Score=35.51  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|..++++|+|-|-+|.-+|+.|...|.. +++.|-|.+.
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~   58 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR   58 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH
Confidence            46778999999999999999999999974 9999988765

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.15  E-value=0.099  Score=34.13  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=26.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +|+|||.|..|..+|+.|...|.. ++++|.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~   30 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAK-VLIIEK   30 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE-EEEESS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCe-EEEEec
Confidence            589999999999999999999996 777754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.15  E-value=0.088  Score=40.75  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -++|.|||+|..|+.++.+|+.+|.. ++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence            35799999999999999999999985 8999865

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.14  E-value=0.053  Score=38.40  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+.+++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~   73 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR   73 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3456778999998 69999999999999997 57787764

>KOG4169|consensus

Probab=94.11  E-value=0.061  Score=38.57  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=30.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +..++++++| +||+|-+++|.|...|+..+.+.|.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~   38 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS   38 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh
Confidence            4578888886 9999999999999999998777665

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.11  E-value=0.1  Score=36.37  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV--KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|...|.  ..+.++|.+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            579999999999999999999984  4688888753

>PRK10015 oxidoreductase; Provisional

Probab=94.11  E-value=0.097  Score=39.32  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|..|+..|..|+..|.. +.++|...
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~-VlliEr~~   38 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLD-VLVIERGD   38 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCe-EEEEecCC
Confidence            5899999999999999999999996 89998654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.10  E-value=0.091  Score=40.67  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.|||+|-.|+.++.+|+.+|.. ++++|.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999985 99998654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.10  E-value=0.1  Score=36.07  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++++.++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~   43 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN   43 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46678899998 68999999999999998 48888764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.10  E-value=0.1  Score=37.88  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|.|-+|.|+|..|...|+.++++++..
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            5799999999999999999999999889999753

>PRK08589 short chain dehydrogenase; Validated

Probab=94.10  E-value=0.064  Score=37.21  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++++|.| .+++|.++++.|+..|. ++.+++.+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence            46678899998 58999999999999997 47777765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.09  E-value=0.1  Score=38.71  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|+|+|.+|..+++.|...|.. ++++|.+.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENND-VTVIDTDE   33 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc-EEEEECCH
Confidence            3799999999999999999999984 88888743

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.09  E-value=0.095  Score=35.82  Aligned_cols=36  Identities=19%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~   48 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG   48 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            46788999998 789999999999999985 6676654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=94.08  E-value=0.077  Score=39.63  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHH----hCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIIL----SGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l----~Gv~~i~l~D~d   53 (84)
                      .|+|||+|.+|..+|..|+.    .|++ ++++|..
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~-v~viE~~   36 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLK-VLLLDAV   36 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCe-EEEEeCC
Confidence            59999999999999999998    7985 9999873

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.1  Score=35.75  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEcC-C-hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGV-E-GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~-g-g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++++|.|+ | |+|.++++.|+..|.. +.+.|.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~   51 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH   51 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC
Confidence            456789999996 5 7999999999999985 8887753

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.08  E-value=0.1  Score=36.84  Aligned_cols=34  Identities=12%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d   53 (84)
                      ..+|.++|+|..|..++++|...|+   .+++++|..
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~   39 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRS   39 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            4589999999999999999999983   567777753

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.07  E-value=0.057  Score=36.62  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      +++++++++|.| .|++|.++++.|...|.. +.+.
T Consensus         2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~   36 (254)
T PRK12746          2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIH   36 (254)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            346678999998 899999999999999875 5443

>PLN03139 formate dehydrogenase; Provisional

Probab=94.06  E-value=0.078  Score=39.93  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|..++|.|+|.|.+|..+++.|...|+. +..+|...
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~  232 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLK  232 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            368999999999999999999999999985 77788653

>PRK06500 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.098  Score=35.21  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .|++|.++++.|...|. ++.+++.+
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~   39 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD   39 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence            35678899998 69999999999999998 47777654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.06  E-value=0.097  Score=39.05  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||.|..|.+.|..|+..|.+ ++++|.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~-V~lie~~   35 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWR-VALIEQS   35 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCe-EEEEcCC
Confidence            46899999999999999999999985 9999975

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.05  E-value=0.11  Score=35.41  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~   45 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNA   45 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            36788999998 78999999999999998 588887753

>PRK05717 oxidoreductase; Validated

Probab=94.05  E-value=0.11  Score=35.47  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|...
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~   44 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDR   44 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence            4567899998 69999999999999997 588887543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.01  E-value=0.099  Score=40.48  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|+|..|-..+..|...|.. ++++|..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999985 9999854

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.00  E-value=0.11  Score=41.17  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~  435 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDH  435 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHH
Confidence            57999999999999999999999995 8999887553

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.98  E-value=0.097  Score=37.08  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++.+|...|. +++++|.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            58999999999999999999997 588888653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06172 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.11  Score=35.23  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~   40 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAK-VVVADRD   40 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCC
Confidence            5678999998 689999999999999974 8888754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.97  E-value=0.11  Score=41.27  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++|+|||+|..|.+.|..|...|.. ++++|...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            357999999999999999999999985 99998653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.96  E-value=0.096  Score=39.45  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ..+|.|+|+|-+|..++.+|+..|. +++.+|.+.-..+.+
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l   42 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI   42 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            3689999999999999999999996 588888754433333

>PRK04148 hypothetical protein; Provisional

Probab=93.95  E-value=0.089  Score=34.34  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++.+|+.+|+| .|.+++..|...|. .++-+|-+.-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence            44789999999 99999999999997 5888886443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.95  E-value=0.11  Score=36.83  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++++|...|. ++.++|.+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999997 488888653

>PRK06196 oxidoreductase; Provisional

Probab=93.95  E-value=0.15  Score=36.22  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~   59 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARR   59 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678899998 589999999999999985 7777654

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=93.94  E-value=0.11  Score=36.54  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d   53 (84)
                      .+.+|.|+|+|-+|+.+++.|...|.   .++.+.|.+
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~   39 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPS   39 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCC
Confidence            45689999999999999999999884   347777654

>PRK06398 aldose dehydrogenase; Validated

Probab=93.92  E-value=0.076  Score=36.56  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|.| .+++|.++++.|+..|. ++.+++.+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            46678899998 68999999999999997 47777654

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=93.92  E-value=0.12  Score=35.44  Aligned_cols=35  Identities=23%  Similarity=0.546  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .+++|.++++.|+..|.. +.++|.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678899998 689999999999999985 7777764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=93.91  E-value=0.096  Score=38.05  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|..++|.|+|.|.+|.++++.+.-.|.. +.-+|+.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~  177 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTS  177 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCC
Confidence            478999999999999999999999888884 7777763

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.91  E-value=0.12  Score=37.45  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|..|.+++..|...|. +++++|...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   51 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP   51 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            4689999999999999999999997 599998753

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.088  Score=37.14  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+++++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~   49 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN   49 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356788999998 69999999999999998 47777654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.87  E-value=0.12  Score=37.19  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|.| +|.+|+++++.|+..|.. ++.+|.+.
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~   38 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDP   38 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCC
Confidence            3568999999 588999999999999964 77777543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK09072 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.11  Score=35.59  Aligned_cols=35  Identities=26%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.+++|.| .|++|.++++.|...|.. +++++.+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~   38 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRN   38 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence            4567899998 699999999999999974 8888754

>PRK05876 short chain dehydrogenase; Provisional

Probab=93.85  E-value=0.082  Score=36.97  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.+.++|.| .|++|.++++.|+..|.. +.+.|.+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~   39 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVD   39 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677899998 899999999999999985 7777754

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.85  E-value=0.13  Score=34.83  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+++++|.| .|++|.++++.|+.-|. ++.++|.+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~   39 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTA   39 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            4568899998 68999999999999998 588887543

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.83  E-value=0.11  Score=38.20  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|-+|..+++.|...|. .+.++|.+.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~   33 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP   33 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence            369999999999999999999997 477777654

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.13  Score=35.32  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+++++|.| .|++|.++++.|...|. ++.+++.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 67899999999999998 68888764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.78  E-value=0.14  Score=36.43  Aligned_cols=35  Identities=14%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..+|+|+|+|++|...+..+...|...+.++|.+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~  178 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN  178 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            45689999999999999988888999888777654

>PRK08628 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.12  Score=35.19  Aligned_cols=36  Identities=19%  Similarity=0.449  Sum_probs=29.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~   40 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRS   40 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCC
Confidence            36778999998 789999999999999985 6666543

>PRK06138 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.12  Score=34.76  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~   38 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRD   38 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCC
Confidence            5678999998 68999999999999996 47777644

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=93.78  E-value=0.12  Score=35.25  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.+++|+|.| .+++|.++++.|+..|.. +.++|.+
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            36788999998 899999999999999985 6666653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.76  E-value=0.13  Score=40.51  Aligned_cols=36  Identities=11%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +.+|+|+|.|.+|..+++.|...|+. ++++|.|.-.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~  435 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISA  435 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHH
Confidence            56999999999999999999999995 8999887543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.75  E-value=0.13  Score=36.63  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      +.+|.++|+|-+|..++++|...|.   .++.++|.+.
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~   39 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV   39 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence            4589999999999999999999985   3588888643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.75  E-value=0.11  Score=43.12  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++|+|||+|+.|...|..|.+.|.. ++++|..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~  338 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF  338 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC
Confidence            478999999999999999999999985 9999865

>PTZ00367 squalene epoxidase; Provisional

Probab=93.75  E-value=0.12  Score=40.56  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|+.+|..|...|. +++++|.+.
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence            3579999999999999999999998 599998765

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.73  E-value=0.15  Score=34.92  Aligned_cols=33  Identities=21%  Similarity=0.496  Sum_probs=28.2

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35788988 89999999999999998 58888764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=93.73  E-value=0.091  Score=39.89  Aligned_cols=34  Identities=32%  Similarity=0.507  Sum_probs=31.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      ..++.++|+|||.|..|..++-.|...| +++++.
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~  204 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLS  204 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcC-CeeEEE
Confidence            5788999999999999999999999999 889997

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.72  E-value=0.085  Score=36.81  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++.++|.|++   |+|.++++.|+..|.. +.+.+.+
T Consensus         3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~   41 (262)
T PRK07984          3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   41 (262)
T ss_pred             ccCCCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecc
Confidence            3667889999985   7999999999999985 7777654

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=93.72  E-value=0.11  Score=38.14  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|..++|.|+|.|.+|+.+++-|...|++ +..+|+-
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~  174 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPY  174 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCC
Confidence            67799999999999999999999999996 8888873

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=93.72  E-value=0.13  Score=36.91  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.++|+|..|+.++.+|...|. ++.++|.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999996 488888764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.68  E-value=0.12  Score=38.89  Aligned_cols=37  Identities=11%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ++.|++|+|.|.+|.++++.|...|. .++++|+|.++
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~  275 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE  275 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh
Confidence            46789999999999999999998887 58888887553

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.14  Score=35.52  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+++.++|.| .+|+|.++++.|+..|. ++.++|.+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~   41 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN   41 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677889998 57999999999999998 48888765

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.67  E-value=0.13  Score=36.76  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.+||+|.+|..++++|...|. .++++|.+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~   33 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ   33 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            69999999999999999999997 488888753

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.64  E-value=0.14  Score=38.88  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|..|.+.|..|...|.. ++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            456999999999999999999999985 9999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.64  E-value=0.13  Score=38.42  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      +|.|+|+|-+|..++.+|+..|. +++.+|.+.-....+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l   39 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKL   39 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHh
Confidence            69999999999999999999998 489998865544445

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.63  E-value=0.12  Score=38.56  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.4

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++|+|+|.|++|..+++.|...|.. +++.|.+.
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence            4578899999999999999999999984 88888654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.63  E-value=0.13  Score=35.27  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|.+++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            36778899998 789999999999999984 6676654

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.63  E-value=0.12  Score=43.31  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++|+|||+|+.|.++|..|.+.|. +++|+|...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            56799999999999999999999998 599998653

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.62  E-value=0.13  Score=37.64  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|+|+|+|++|--.+..+...|..++.++|.+.-
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            37999999999999999999999999999977443

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=93.61  E-value=0.15  Score=34.38  Aligned_cols=36  Identities=19%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |++++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~   37 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNR   37 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH
Confidence            4578899998 78999999999999987 477776543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN02477 glutamate dehydrogenase

Probab=93.59  E-value=0.12  Score=39.21  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++|+|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4677999999999999999999999998755577754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.57  E-value=0.11  Score=34.81  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE-eCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL-DSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~-D~d   53 (84)
                      |++++++|.| .|++|.++++.|+..|.. +.++ +.+
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~   39 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDIN   39 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence            5677899998 699999999999999986 5555 554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.57  E-value=0.14  Score=36.65  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.++|+|-.|..++.+|...|. +++++|.+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            379999999999999999999996 589988754

>PRK06932 glycerate dehydrogenase; Provisional

Probab=93.57  E-value=0.1  Score=37.94  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..|..++|.|+|.|.+|.++++.|...|+. +..+|.
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~  178 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH  178 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence            368999999999999999999999988885 666664

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=93.55  E-value=0.15  Score=34.65  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.+.|.+
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~   42 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDIT   42 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCC
Confidence            5677899998 78999999999999997 57787754

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.52  E-value=0.14  Score=34.54  Aligned_cols=35  Identities=31%  Similarity=0.520  Sum_probs=29.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++|+|.| .|++|.++++.|...|. ++.+++..
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~   37 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLN   37 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4567899998 79999999999999997 47777654

>PRK08017 oxidoreductase; Provisional

Probab=93.51  E-value=0.18  Score=34.16  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++|+|.|+ |++|.++++.|...|. ++.+++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~   35 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRK   35 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            47999997 9999999999999997 47776654

>PRK12831 putative oxidoreductase; Provisional

Probab=93.51  E-value=0.14  Score=38.94  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|..|.+.|..|.+.|.. ++++|..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~  172 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL  172 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence            467899999999999999999999985 8999853

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.51  E-value=0.12  Score=35.30  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.+.++|.| .+++|.++++.|+..|. ++.++|..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~   41 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLR   41 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46678899998 78999999999999998 57777753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.50  E-value=0.16  Score=37.93  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..|+|||+|..|...|..|+..|. ++.++|.+.+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~~~~   35 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGL-KVALVEKEYL   35 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            469999999999999999999998 5999997655

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.48  E-value=0.16  Score=34.12  Aligned_cols=35  Identities=29%  Similarity=0.483  Sum_probs=29.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~   40 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGL   40 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCC
Confidence            5678899998 699999999999999985 6666654

>PRK06125 short chain dehydrogenase; Provisional

Probab=93.48  E-value=0.15  Score=34.85  Aligned_cols=36  Identities=25%  Similarity=0.526  Sum_probs=30.6

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.|+ +++|.++++.|+..|. ++.+++.+.
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~   41 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDA   41 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            56788999985 8999999999999998 688887643

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.48  E-value=0.12  Score=39.04  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .++++.+|+|.| +|.+|+++++.|+..|. +++++|.
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            467788999998 79999999999999997 4888874

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.48  E-value=0.14  Score=38.30  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|+|.|+.|..+++.|...|. ++++.|...
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~   33 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND   33 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            479999999999999999999998 599998653

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=93.45  E-value=0.15  Score=39.46  Aligned_cols=34  Identities=12%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d   53 (84)
                      ...|+|||.|-+|+.+|..|+.. +..+++++|..
T Consensus        45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~   79 (497)
T PTZ00383         45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR   79 (497)
T ss_pred             cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence            46999999999999999999986 55689999975

>PRK06940 short chain dehydrogenase; Provisional

Probab=93.45  E-value=0.15  Score=35.53  Aligned_cols=32  Identities=31%  Similarity=0.548  Sum_probs=26.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|.|+|++|.++++.|. .|. ++.++|.+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~   33 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYN   33 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCC
Confidence            456788899999999999996 785 58888765

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.44  E-value=0.14  Score=34.01  Aligned_cols=31  Identities=29%  Similarity=0.482  Sum_probs=25.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEE
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCL   49 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l   49 (84)
                      +..++|+|.| .|++|.++++.|...|.. +++
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~   35 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV   35 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence            3456899998 799999999999999986 444

>PRK09242 tropinone reductase; Provisional

Probab=93.42  E-value=0.16  Score=34.56  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~   42 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD   42 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            35678999998 68999999999999998 48887654

>PRK08278 short chain dehydrogenase; Provisional

Probab=93.42  E-value=0.16  Score=35.24  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTA   40 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeccc
Confidence            5667899998 79999999999999998 588877643

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.42  E-value=0.14  Score=38.21  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|.|..|..+++.|...|. +++..|...
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~   36 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL   36 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            34689999999999999999999998 588888643

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.40  E-value=0.16  Score=36.85  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      .+|.|+|+ |.+|..++..|+..|+. +++++|..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            47999997 99999999999999974 79999973

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK08605 D-lactate dehydrogenase; Validated

Probab=93.39  E-value=0.12  Score=37.81  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNII-LSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~-l~Gv~~i~l~D~d   53 (84)
                      .|..++|.|+|+|.+|..+++.|. ..|+ ++..+|..
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~  179 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPF  179 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCC
Confidence            588999999999999999999995 3455 47777754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.38  E-value=0.14  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|||+|+.|-+.|..|++.|. +++|+|...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            35689999999999999999999998 599998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.38  E-value=0.12  Score=35.55  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++.++|.|++   |+|.++++.|+..|.. +.+.|.+
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~   45 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLN   45 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCC
Confidence            4677889999975   8999999999999974 7777654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.38  E-value=0.15  Score=38.44  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||.|..|.+.+..|...|. +++++|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            35789999999999999999999997 59999865

>PRK07233 hypothetical protein; Provisional

Probab=93.37  E-value=0.16  Score=36.99  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+|||+|-.|-..|..|...|.+ ++|++...
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~-v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHE-VTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEEeCC
Confidence            689999999999999999999985 88887654

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.33  E-value=0.17  Score=34.25  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCh
Confidence            35577899998 599999999999999984 77776654

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.33  E-value=0.12  Score=35.67  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             HhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.|+   +|+|.++++.|+..|.. +.+.|.+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~   42 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFG   42 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCc
Confidence            467789999996   79999999999999985 8887643

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.32  E-value=0.14  Score=38.70  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|..++|.|+|.|.+|..+|+.+...|.. +..+|..
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~~  183 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDIE  183 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            468999999999999999999999999984 7777753

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.32  E-value=0.16  Score=39.28  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH--hCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIIL--SGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l--~Gv~~i~l~D~d~v   55 (84)
                      ...+|+|||+|+.|.+.|..|..  .|. +++|+|....
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~   62 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT   62 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC
Confidence            46789999999999999999986  576 5999987653

>PRK12827 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.16  Score=34.03  Aligned_cols=34  Identities=32%  Similarity=0.592  Sum_probs=28.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +++++++|.| .|++|.++++.|+..|.. +++++.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~   38 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI   38 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence            4567899998 799999999999999985 666554

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.30  E-value=0.15  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             hhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.+.|+|.|++   ++|.++++.|+..|. ++.+++..
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            456789999974   799999999999997 58887654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.30  E-value=0.16  Score=37.91  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|+.|.+.|..|+..|. +++|+|.+.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence            4689999999999999999999997 599999763

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.28  E-value=0.096  Score=36.26  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             HHhhcCcEEEEc---CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          16 SRLRATKILLIG---VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        16 ~~l~~~~vlivG---~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ++++++.++|.|   .+|+|.++++.|+..|.. +.+.+
T Consensus         2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~-v~~~~   39 (261)
T PRK08690          2 GFLQGKKILITGMISERSIAYGIAKACREQGAE-LAFTY   39 (261)
T ss_pred             CccCCcEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEc
Confidence            357788999999   459999999999999985 66653

>PRK06924 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.19  Score=34.03  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=27.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCc
Confidence            4788998 79999999999999998 588777543

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.16  Score=35.01  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|.| .|++|.++++.|...|.. +.+.+.+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~   38 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD   38 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence            4567899998 699999999999999985 7777654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.26  E-value=0.15  Score=38.86  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++.++|+|+|.|+.|..+++.|...|. +++..|....
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~   41 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREA   41 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            346789999999999999999999998 5999997553

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.25  E-value=0.15  Score=35.58  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             hhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++++.++|.|++   |+|.++++.|+..|.. +.+.+.
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r   41 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQ   41 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecC
Confidence            566789999986   8999999999999985 777764

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.25  E-value=0.17  Score=34.43  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~   42 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARH   42 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence            5678899998 589999999999999984 7777654

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.24  E-value=0.09  Score=36.10  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             HHhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEe
Q psy9593          16 SRLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        16 ~~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ++|++++++|.|++   |+|.++++.|+..|.. +.+.+
T Consensus         2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~   39 (256)
T PRK12859          2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTY   39 (256)
T ss_pred             CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEe
Confidence            36788999999985   8999999999999985 66653

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.23  E-value=0.11  Score=38.86  Aligned_cols=37  Identities=16%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...++|+|+|.|-.|..+++.|...++ +|+|+|+..
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~   43 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRN   43 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCC
Confidence            4567899999999999999999965555 599998654

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.22  E-value=0.14  Score=34.57  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=26.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      +++++++|.| .|++|.++++.|...|.. +.+.+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~   36 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNY   36 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEc
Confidence            4567899998 889999999999999975 55543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.20  E-value=0.18  Score=37.09  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|+|||+|..|..+|..|...|.-+++|++..
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~   33 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAA   33 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence            379999999999999999999884359999875

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=93.20  E-value=0.19  Score=33.63  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=28.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +++++++|.| .|++|.++++.|+..|. .+.+.+.
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~   38 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGT   38 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            5678999998 79999999999999997 4666544

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.18  E-value=0.19  Score=35.42  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=30.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++++|.| .||+|.++++.|+..|. ++.+++.+
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE   42 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36678999998 69999999999999998 58887754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=93.18  E-value=0.14  Score=37.62  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCccccccC
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVVTKEDV   60 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v~~~nl   60 (84)
                      |+|+|+|.+|+.+++.|+..+-- ++++.|.+.-....+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~   39 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL   39 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence            78999999999999999998855 899999876654333

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=93.18  E-value=0.16  Score=40.81  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .-+..+|+|||+|..|..+|..|...|+. ++|++.+.
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~-V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD-VLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCCe-EEEEeccc
Confidence            35678999999999999999999999995 99998754

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.16  E-value=0.19  Score=36.80  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|.|+|+|..|+.++..|+..|  .++++..+
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~   38 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS   38 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence            368999999999999999999998  46666543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.16  E-value=0.16  Score=34.90  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.+.++|.|++   |+|.++++.|+..|.. +.+.+.+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCc
Confidence            3567889999974   9999999999999985 7777543

>PRK08177 short chain dehydrogenase; Provisional

Probab=93.16  E-value=0.21  Score=33.48  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=28.6

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++|+|.| .|++|.++++.|+..|. ++.++|...-
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~   36 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQ   36 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCc
Confidence            4688888 89999999999999997 5888876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=93.15  E-value=0.18  Score=37.72  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|..|-..|+.|+..|. ++.++|.+.+
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~   37 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGPL   37 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCcc
Confidence            4579999999999999999999998 4999997554

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.15  E-value=0.17  Score=38.40  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|+|..|.+.+..|.+.|.. ++++|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            467899999999999999999999985 8998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=93.14  E-value=0.2  Score=34.90  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=26.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC---CcEEEE-eC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLL-DS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~-D~   52 (84)
                      .+|.++|+|.+|+.++++|...|.   ..++++ |.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r   36 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS   36 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence            369999999999999999999985   257777 54

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=93.13  E-value=0.21  Score=36.70  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=28.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~   52 (84)
                      ++|+|||+|-.|-..|+.|...|.+ +++|++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa   33 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEA   33 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence            4799999999999999999999853 6888875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.12  E-value=0.2  Score=37.38  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|+|.+|.|+|..|...|.. +++++..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~-Vtli~~~  189 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSK-VTVLDAA  189 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            57999999999999999999999985 9998763

>PLN02240 UDP-glucose 4-epimerase

Probab=93.11  E-value=0.17  Score=36.02  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=28.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +++++|+|.| .|.+|..+++.|...|. +++++|.
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~   37 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN   37 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567999998 59999999999999996 5888763

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=93.11  E-value=0.2  Score=35.68  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   39 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRN   39 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            3467899998 79999999999999996 58887754

>PRK07791 short chain dehydrogenase; Provisional

Probab=93.10  E-value=0.12  Score=36.30  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++++.++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~   39 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIG   39 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCC
Confidence            46678889988 789999999999999985 7777643

>PLN02697 lycopene epsilon cyclase

Probab=93.09  E-value=0.18  Score=39.30  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|+|||+|..|..+|..|+..|.+ +.++|.+
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~-V~LIe~~  140 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPD  140 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCc-EEEecCc
Confidence            5799999999999999999999995 8888875

>PRK09186 flagellin modification protein A; Provisional

Probab=93.09  E-value=0.19  Score=34.03  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=28.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~   37 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADID   37 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecC
Confidence            3567899998 689999999999999975 7776543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.09  E-value=0.18  Score=33.58  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=26.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      +++++++|.| .|++|.++++.|...|.. +.++
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~   35 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN   35 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            4567899998 799999999999999986 5444

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=93.07  E-value=0.16  Score=40.48  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..-|+|||+|..|++.|..+++.|.+ +.+++.+
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~k-V~LiE~~   36 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAK-TLLLTHN   36 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCc-EEEEecc
Confidence            45799999999999999999999997 8888765

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.07  E-value=0.2  Score=33.54  Aligned_cols=35  Identities=29%  Similarity=0.547  Sum_probs=28.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+.+|+|.| .|++|.++++.|...|.. +.+++.+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~   39 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARD   39 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCC
Confidence            3457899998 699999999999999985 7777754

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.06  E-value=0.14  Score=39.68  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .|..++|.|+|.|.+|.++++.|...|. ++..+|+
T Consensus       137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~  171 (526)
T PRK13581        137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP  171 (526)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence            5889999999999999999999999998 5888886

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.05  E-value=0.18  Score=39.80  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++|+|+|+|..|-+.+..|.+.|.. ++++|...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence            478999999999999999999999984 99998654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.05  E-value=0.26  Score=37.08  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +|+|||+|+-|...|..++..|.+ ++++|.+.+-
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~-V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKN-VTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc-EEEEECCccc
Confidence            899999999999999999999985 9999987654

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=93.04  E-value=0.17  Score=30.49  Aligned_cols=36  Identities=19%  Similarity=0.465  Sum_probs=27.1

Q ss_pred             hcCcEEEEcCChhHHHHHHH-HHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKN-IILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~-L~l~Gv~~i~l~D~d~   54 (84)
                      ++.+|+|+|+|++|..++.+ ....|.+-..++|.+.
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~   38 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP   38 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence            45789999999999999854 4467777667776543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=93.03  E-value=0.2  Score=36.93  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+|+|+|.|.+|.|+|..|...|.. +++++.
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~-Vtlv~~  175 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCK-VTVIEL  175 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe-EEEEec
Confidence            47899999999999999999999984 999875

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.01  E-value=0.21  Score=35.42  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..+++.|...|.   .++.+++.+.
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~   38 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK   38 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence            369999999999999999999983   5688887643

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.98  E-value=0.19  Score=35.14  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             HHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+++++.++|.|+   +|+|.++++.|+..|.. +.+.+.
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~-V~l~~r   44 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQ   44 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcC
Confidence            3567788999997   59999999999999984 777653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.96  E-value=0.23  Score=35.60  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...+|+|.|+|++|...+..+...|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            4678999999999999999999999988887764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=92.94  E-value=0.21  Score=37.67  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|+.|.+.|..|+..|. ++.|+|.+.+
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~   38 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKGKL   38 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCC
Confidence            4579999999999999999999998 4999998654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=92.93  E-value=0.18  Score=32.69  Aligned_cols=32  Identities=13%  Similarity=0.261  Sum_probs=27.5

Q ss_pred             EEEcCChhHHHHHHHHHHhC----CCcEEEEeCCcc
Q psy9593          24 LLIGVEGVGAEIAKNIILSG----VKSVCLLDSGVV   55 (84)
Q Consensus        24 livG~gg~G~eiak~L~l~G----v~~i~l~D~d~v   55 (84)
                      .|||+|..|..+++.|+...    .-+|+|+|+...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            48999999999999999884    567999998554

>PRK08251 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.24  Score=33.39  Aligned_cols=34  Identities=29%  Similarity=0.503  Sum_probs=28.3

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~   36 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT   36 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            46788988 89999999999999996 588877543

>PRK14694 putative mercuric reductase; Provisional

Probab=92.86  E-value=0.23  Score=37.53  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+..|+|||+|+.|-..|..|.+.|. ++.++|.+.+
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~~~   40 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGA-RVTLIERGTI   40 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcccc
Confidence            45689999999999999999999999 6999997654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.86  E-value=0.31  Score=36.07  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus       136 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~  169 (427)
T TIGR03385       136 KVENVVIIGGGYIGIEMAEALRERGK-NVTLIHRS  169 (427)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            45799999999999999999999998 49998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.14  Score=38.56  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++|+|+|.|+.|-.+++.|...|. .++..|..
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~   41 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDN   41 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCC
Confidence            4667899999999999999999999998 58888854

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.19  Score=35.41  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+++++++|.| .|++|.++++.|+..|.. +.+++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            466778999998 689999999999999975 7777543

>PRK08643 acetoin reductase; Validated

Probab=92.83  E-value=0.25  Score=33.59  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=27.7

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45788887 88999999999999997 58887764

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.82  E-value=0.21  Score=37.46  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..++|+|+|.|+.|.++++.|...|. .+++.|....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            456799999999999999999999997 4888886543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.81  E-value=0.22  Score=35.70  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.+||+|-+|..++++|...|. +++++|.+.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~   33 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP   33 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            69999999999999999999997 578887653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.80  E-value=0.26  Score=37.26  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +-+..++|+|+|.|..|..+++.|...|. .+++.|...
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            45667899999999999999999999998 599999653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=92.80  E-value=0.21  Score=38.19  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|..|.+++..|...|. +++++|...
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~  176 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED  176 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4699999999999999999999998 499998643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.80  E-value=0.23  Score=36.25  Aligned_cols=34  Identities=29%  Similarity=0.552  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~  173 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNA  173 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecC
Confidence            45799999999999999999999997 58998763

>PRK09897 hypothetical protein; Provisional

Probab=92.79  E-value=0.21  Score=39.04  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      .+|+|||+|..|..++..|+..+.. +|+|+|+.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~   35 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA   35 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence            5899999999999999999986542 69999983

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.78  E-value=0.25  Score=37.26  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      +..|+|||+|+.|-+.|..+++.|.+ +.|+|.+.+--
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~-V~liE~~~~GG   38 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAK-ALLVEAKKLGG   38 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEeccccccc
Confidence            45799999999999999999999984 99999765433

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK11445 putative oxidoreductase; Provisional

Probab=92.78  E-value=0.2  Score=36.38  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|+|||+|..|+.+|..|+.. + +++++|...
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence            3699999999999999999988 5 699999654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.77  E-value=0.18  Score=37.76  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||+|+.|.+.|..|...|. +++++|.+
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~   37 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERY   37 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence            4579999999999999999999997 59999974

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.75  E-value=0.28  Score=36.74  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~  180 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRS  180 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence            4799999999999999999999998 59999754

>PRK06720 hypothetical protein; Provisional

Probab=92.74  E-value=0.25  Score=32.80  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++.++|.|+ +|+|.++++.|...|. ++.++|.+
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~   49 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID   49 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            467788999984 6799999999999996 58888854

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.71  E-value=0.25  Score=33.60  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~   36 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS   36 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            45789998 68999999999999997 588887653

>PRK07677 short chain dehydrogenase; Provisional

Probab=92.71  E-value=0.26  Score=33.51  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=27.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~   35 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTK   35 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5788888 68899999999999998 588887653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=92.71  E-value=0.18  Score=39.20  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .|..++|.|+|.|.+|.++++.|...|. ++..+|+
T Consensus       135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~  169 (525)
T TIGR01327       135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDP  169 (525)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence            5888999999999999999999998888 4888886

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.71  E-value=0.14  Score=35.42  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             HHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          16 SRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        16 ~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ++++++.++|.|+   +|+|.++++.|+..|.. +.+.+
T Consensus         2 ~~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~   39 (260)
T PRK06997          2 GFLAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTY   39 (260)
T ss_pred             CccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEc
Confidence            3567789999994   69999999999999985 66664

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=92.69  E-value=0.24  Score=33.46  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=29.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|...|.. ++++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~~-v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGAK-VIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecch
Confidence            5678899998 578999999999999974 77776654

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.68  E-value=0.23  Score=34.82  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             hhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++.++|.|+   +|+|.++++.|+..|. ++.+.|..
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence            45678999997   5999999999999998 47777654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.68  E-value=0.23  Score=37.56  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+|+|+|.|.+|.|++..|...|. ++++++.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~  205 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEY  205 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeC
Confidence            5899999999999999999999998 4999874

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=92.67  E-value=0.2  Score=34.20  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++++.++|.| .|++|.++++.|+..|.. +.++|.
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~   42 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINI   42 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecC
Confidence            6678899998 779999999999999975 666654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.67  E-value=0.23  Score=34.66  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGV--KSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d   53 (84)
                      +|.|+|+|-+|..+++.|...|.  ..+.+.|.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~   35 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN   35 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC
Confidence            69999999999999999999885  335666653

>PRK10262 thioredoxin reductase; Provisional

Probab=92.66  E-value=0.25  Score=35.18  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +..+|+|||+|+.|.+.|..|.+.|.. .+++|.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~-~~~ie~   37 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITG   37 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCC-eEEEEe
Confidence            567899999999999999999999985 667664

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.64  E-value=0.22  Score=38.19  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILS--GVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d   53 (84)
                      .|+|||.|-+|+.+|..|++.  |. +++++|..
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~   34 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNW-SITLIERL   34 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCC-eEEEEEcC
Confidence            589999999999999999997  76 59999984

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12742 oxidoreductase; Provisional

Probab=92.63  E-value=0.13  Score=34.44  Aligned_cols=34  Identities=26%  Similarity=0.573  Sum_probs=28.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      +++.++|+|.| .|++|.++++.|...|.. +.+.+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~   37 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTY   37 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEec
Confidence            46678999998 589999999999999985 55553

>PRK06370 mercuric reductase; Validated

Probab=92.62  E-value=0.28  Score=36.90  Aligned_cols=40  Identities=23%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ...|+|||+|+-|.+.|..++..|. +++++|.+.+-...+
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG~c~   44 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGM-KVALIERGLLGGTCV   44 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCccCCcee
Confidence            4689999999999999999999998 599999875544444

>PLN02712 arogenate dehydrogenase

Probab=92.58  E-value=0.21  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++..+|.|||+|.+|..+++.|...|. ++..+|.+.
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~  402 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSD  402 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECCh
Confidence            4577899999999999999999999886 588888763

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=92.57  E-value=0.23  Score=37.45  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|.|.+|.|++..|...|.. +++++..
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~-Vtli~~~  212 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVE-VTVVEAA  212 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe-EEEEEec
Confidence            47999999999999999999999975 9999753

>PRK07102 short chain dehydrogenase; Provisional

Probab=92.56  E-value=0.27  Score=33.19  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=27.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|.| .|++|.++++.|+..|. +++++|.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~   35 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDV   35 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCH
Confidence            4788998 79999999999999997 488877654

>PRK06128 oxidoreductase; Provisional

Probab=92.54  E-value=0.23  Score=35.06  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      .+++.++++|.| .|++|.++++.|+..|.. +.+.+
T Consensus        51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~   86 (300)
T PRK06128         51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY   86 (300)
T ss_pred             cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence            467788999998 699999999999999985 55553

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=92.53  E-value=0.24  Score=34.05  Aligned_cols=36  Identities=28%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~   43 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDIN   43 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            45678899998 689999999999999985 7777654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.52  E-value=0.21  Score=37.14  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+| .|.+|..+++.|...|. .++++|.+.
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence            6899998 99999999999999996 499998653

>PRK07577 short chain dehydrogenase; Provisional

Probab=92.51  E-value=0.26  Score=32.86  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~   37 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSA   37 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            356899998 68999999999999997 477776543

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.50  E-value=0.27  Score=33.61  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.+.++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~   41 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD   41 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            5678899998 589999999999999985 7777664

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.50  E-value=0.21  Score=40.14  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|-.|+.|+..++.+|.. ++++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999984 99998653

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.50  E-value=0.25  Score=35.24  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|.| .+|+|.++++.|+..|. ++.+++.+
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~   47 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN   47 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778899998 78999999999999997 57777654

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.49  E-value=0.19  Score=32.58  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=26.4

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|+|.++.++++.....|.. ++++|++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~-v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFR-VTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEE-EEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCE-EEEEcCCc
Confidence            57899999999999999999995 99999873

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=92.48  E-value=0.23  Score=39.88  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++|+|||+|..|...|..|.+.|.. ++++|..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~  463 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL  463 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999985 9999874

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=92.47  E-value=0.27  Score=32.12  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=29.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++|+|+|+.|.++++.|-..|..-+-++|++.-
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~   34 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPA   34 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCcc
Confidence            5899999999999999999999887888887643

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=92.47  E-value=0.23  Score=33.50  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=25.0

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEE
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCL   49 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l   49 (84)
                      +++.++|.| .|++|.++++.|+..|.. +.+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~   32 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA   32 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence            456788888 699999999999999985 444

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.46  E-value=0.24  Score=37.72  Aligned_cols=37  Identities=14%  Similarity=0.006  Sum_probs=32.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++++|+|+|.|-.|..+++.|...|.. +++.|.+..
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~   42 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNA   42 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCc
Confidence            4578999999999999999999999996 888886543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=92.46  E-value=0.22  Score=38.28  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      .|+.++|+|.|.|-+|+..++.|...|..=+.+-|
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            47899999999999999999999999998666666

>PRK05993 short chain dehydrogenase; Provisional

Probab=92.46  E-value=0.27  Score=34.16  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=27.5

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~   37 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWR-VFATCRK   37 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            457899985 99999999999999974 7777654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.45  E-value=0.26  Score=37.10  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...+|+|+|.|-+|.++|..|...|..+++++..
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~  305 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYR  305 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeee
Confidence            4689999999999999999999999988999965

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.42  E-value=0.25  Score=32.49  Aligned_cols=38  Identities=21%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+...+|+|+|.|-+|...++.+...|+. ++..|...-
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~   54 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPE   54 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHH
Confidence            46778999999999999999999999996 777776543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07208 hypothetical protein; Provisional

Probab=92.41  E-value=0.27  Score=36.86  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +..+|+|||+|-.|...|..|...|.. +++++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~-v~v~E~   35 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYP-VTVLEA   35 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCc-EEEEec
Confidence            467899999999999999999999985 888875

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.40  E-value=0.23  Score=33.50  Aligned_cols=39  Identities=28%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++|.|+|+|=+|...|-.|+..|. +++-+|.+.-..+.+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l   39 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEAL   39 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHH
Confidence            489999999999999999999997 488888876665556

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG0069|consensus

Probab=92.38  E-value=0.16  Score=37.88  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCL   49 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l   49 (84)
                      ..++.++|.|+|.|.+|.++++.|...| ..|.-
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y  190 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY  190 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence            4688999999999999999999999877 43443

>PLN02306 hydroxypyruvate reductase

Probab=92.36  E-value=0.2  Score=37.68  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNII-LSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~-l~Gv~~i~l~D~d   53 (84)
                      .|..++|.|+|.|.+|.++++.|. -.|+. +..+|..
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~  198 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY  198 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            588999999999999999999985 56774 7777753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		4e-12
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		2e-07
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-07
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		5e-05
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		5e-05
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		5e-05
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		6e-05
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		6e-05
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		6e-05
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		7e-05
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		7e-05
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-04
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		5e-04
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		5e-04
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		5e-04
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		5e-04

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED 71
          L  Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     
Sbjct: 28 LEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGS 86
Query: 72 IGKN 75
          +G+N
Sbjct: 87 VGRN 90

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 12  LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFL 66
           L +Q ++  +K+ L+G   +G E+ KN  L G+ S     + + D+  + K ++N  QFL
Sbjct: 417 LDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNR-QFL 475
Query: 67  APHEDIGKN 75
              +D+GKN
Sbjct: 476 FRPKDVGKN 484

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
          ++  + +L+IG +G+G EIAKN+ L+GVKSV L D      ED+++  FL   +DIG
Sbjct: 23 QMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLT-EDDIG 78

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 32 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 90

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15  QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
           Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 45  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 103

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15  QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
           Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 464

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15  QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
           Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 64  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 122

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     FL     IGK
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGK 85
Query: 75 N 75
          N
Sbjct: 86 N 86

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     FL     IGK
Sbjct: 25 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGK 83
Query: 75 N 75
          N
Sbjct: 84 N 84

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     FL     IGK
Sbjct: 28 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGK 86
Query: 75 N 75
          N
Sbjct: 87 N 87

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     FL     IGK
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGK 85
Query: 75 N 75
          N
Sbjct: 86 N 86

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     FL     IGK
Sbjct: 25 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGK 83
Query: 75 N 75
          N
Sbjct: 84 N 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	9e-23
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	1e-22
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-22
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-14
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	7e-10
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-09
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	4e-07
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	6e-06
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	9e-04

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 87.9 bits (218), Expect = 9e-23
 Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+
Sbjct: 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGR 89

Query: 75 N 75
          N
Sbjct: 90 N 90

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score = 89.0 bits (220), Expect = 1e-22
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     F      IGK
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGK 85

Query: 75 N 75
          N
Sbjct: 86 N 86

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 88.7 bits (219), Expect = 1e-22
 Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
            +++ + +L++G++G+G EIAKN++L+GVKS+ + D   V   D++  QF    +DIG+
Sbjct: 22 MLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLS-TQFFLTEKDIGQ 80

Query: 75 N 75
           
Sbjct: 81 K 81

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 66.4 bits (161), Expect = 1e-14
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 14  YQSRLRATKILLIGVEGVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAP 68
           +Q ++  +K+ L+G   +G E+ KN  L G+ S     + + D+  + K ++N  QFL  
Sbjct: 419 FQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-RQFLFR 477

Query: 69  HEDIGKN 75
            +D+GKN
Sbjct: 478 PKDVGKN 484

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 52.4 bits (125), Expect = 7e-10
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
              +   ++L++G  G+G E+ KN++L+G   + L+D   +   ++N  QFL   + +G
Sbjct: 11 LAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNR-QFLFQKKHVG 69

Query: 74 K 74
          +
Sbjct: 70 R 70

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 14  YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
            Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIG 463

Query: 74  K 74
           +
Sbjct: 464 R 464

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 15  QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLAPHEDIG 73
              ++ TK+LL+G   +G  +++ +I  GV+ +  +D+G V     N   Q L   ED G
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALYNFEDCG 379

Query: 74  KN 75
           K 
Sbjct: 380 KP 381

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 35.0 bits (81), Expect = 9e-04
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 11 ILPY--QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLA 67
          ILP      ++ TK+LL+G   +G  +++ +I  GV+ +  +D+G V     N   Q L 
Sbjct: 23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALY 80

Query: 68 PHEDIGKN 75
            ED GK 
Sbjct: 81 NFEDCGKP 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	99.9
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	99.9
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	99.9
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	99.88
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.88
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	99.88
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.86
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.86
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.86
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	99.85
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.85
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.85
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	99.85
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.83
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.51
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.47
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.29
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.26
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.16
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.15
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.14
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.14
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.11
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.1
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.07
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.07
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.07
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.05
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.02
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.98
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.98
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.97
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.92
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.88
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.85
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.84
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.84
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.77
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.77
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.69
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.66
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.66
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.64
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.64
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.6
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.6
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.58
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.56
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.54
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.53
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.52
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.5
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.49
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.49
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.48
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.47
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.47
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.47
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.46
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.45
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.44
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.44
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.43
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.42
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.41
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.4
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.4
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.37
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.37
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.37
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.36
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.35
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.35
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.34
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.34
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.34
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.34
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.32
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.32
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.31
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.31
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.3
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.29
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.29
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.27
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	96.26
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.26
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.25
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.25
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.24
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.22
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.22
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.22
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.19
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.19
3dme_A	369	Conserved exported protein; structural genomics, P	96.19
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.18
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.16
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.15
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.15
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.14
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.13
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.13
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.12
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.12
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.1
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.1
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.07
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.05
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.05
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.04
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.03
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.01
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.01
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.99
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.99
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.98
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.98
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.97
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.95
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.94
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	95.92
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	95.91
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.91
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	95.91
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.9
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.9
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.89
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.89
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.86
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.86
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.86
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.85
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.85
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.84
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.82
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.81
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.8
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.79
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.79
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.76
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.75
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.74
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	95.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.72
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.72
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.72
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.71
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.7
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.7
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.69
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.69
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.68
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.68
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.68
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.67
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.66
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.66
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.65
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.65
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.64
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.64
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.62
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.61
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	95.61
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.6
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.59
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.59
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.58
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.58
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.57
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	95.57
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.56
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	95.56
3atr_A	453	Conserved archaeal protein; saturating double bond	95.56
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.55
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.55
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	95.54
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.54
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.54
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.54
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.54
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.54
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.53
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.52
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.51
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.51
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.5
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.48
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.48
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.47
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.47
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.47
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.46
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.44
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.43
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.43
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.43
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.42
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.42
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.41
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	95.41
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.41
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.4
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.4
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.4
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.4
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.39
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.39
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.39
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.39
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.39
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.38
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	95.37
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.36
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.36
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.35
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.34
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.34
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.33
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.32
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.32
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.32
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.31
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.31
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.31
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.31
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.27
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.26
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.26
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.26
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.26
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.25
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.24
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	95.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.23
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.23
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.22
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.22
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.21
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.19
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	95.19
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.18
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.17
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.17
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.17
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.17
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.16
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.15
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.15
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	95.15
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.15
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.15
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.14
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	95.14
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.14
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.14
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.13
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.13
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.13
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.13
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	95.12
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.12
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.1
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.1
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	95.09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.09
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.09
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.08
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.08
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.06
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.05
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.03
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.03
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.02
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	95.01
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.01
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.01
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.01
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.01
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.0
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.99
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	94.99
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	94.99
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.99
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	94.99
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.98
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.97
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.97
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.95
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.95
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	94.94
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.94
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.93
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	94.93
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.93
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.93
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.92
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.91
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	94.9
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.9
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.88
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.88
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.87
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.87
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.86
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.86
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.85
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.85
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.85
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.84
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.84
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.83
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	94.82
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.82
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.82
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.82
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.81
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.81
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.8
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.8
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.78
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	94.78
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	94.77
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	94.77
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.76
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.76
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.74
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.74
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.74
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.73
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.73
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.73
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	94.72
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	94.72
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.71
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	94.71
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.71
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.71
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.71
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.71
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.7
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	94.69
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.68
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	94.68
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.68
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	94.67
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.67
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.67
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.67
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.66
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.66
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.65
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.65
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.65
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.65
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.65
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.64
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.64
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	94.64
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	94.64
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.63
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	94.63
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.63
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.63
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.63
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.63
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	94.62
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.61
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.61
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.6
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.6
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.59
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.59
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.59
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	94.59
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.59
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.58
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.57
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.57
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	94.56
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	94.56
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.56
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.55
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.55
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.55
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	94.54
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	93.56
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.54
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.53
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.53
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.53
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.52
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	94.52
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.51
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.51
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.51
1spx_A	278	Short-chain reductase family member (5L265); paral	94.5
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	94.49
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.49
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.49
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	94.49
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	94.48
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.48
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.48
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.48
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.47
2duw_A	145	Putative COA-binding protein; ligand binding prote	94.47
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.47
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.47
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.47
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.46
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	94.46
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.45
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.45
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	94.45
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	94.45
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.44
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	94.44
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.44
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	94.43
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.43
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	94.42
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.42
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.41
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.41
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	94.4
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	94.4
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	94.4
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.39
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.39
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.38
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.37
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	94.37
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.36
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	94.34
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	94.33
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.33
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.33
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	94.32
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.31
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.31
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	94.31
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.3
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.3
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	94.3
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	94.29
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.29
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	94.29
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.28
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.28
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.28
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	94.28
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.27
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.26
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.26
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.25
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.25
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.25
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.24
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.24
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.23
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.23
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.22
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.22
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	94.21
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.2
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.2
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.2
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.2
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	94.19
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.18
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.18
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.18
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.16
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.15
1xkq_A	280	Short-chain reductase family member (5D234); parra	94.15
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.14
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.14
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.12
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.11
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.1
1xq1_A	266	Putative tropinone reducatse; structural genomics,	94.1

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=99.90  E-value=1.7e-24  Score=156.75  Aligned_cols=73  Identities=48%  Similarity=0.705  Sum_probs=70.5

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ++.++|++|++++|+|+|+||+|+++++||+++||++|+|+|+|.|+++|| +||||++++|+|++||++++++
T Consensus        26 ~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL-~rq~~~~~~diG~~Ka~~~~~~   98 (346)
T 1y8q_A           26 WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDP-GAQFLIRTGSVGRNRAEASLER   98 (346)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCG-GGCTTSCSSCTTSBHHHHHHHH
T ss_pred             hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhC-CCCCccccccCcCCHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999 9999999999999999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=99.90  E-value=3.3e-24  Score=149.18  Aligned_cols=78  Identities=27%  Similarity=0.385  Sum_probs=73.9

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|| +||++++.+|+|++|+++++++
T Consensus        13 ~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL-~Rq~l~~~~diG~~Ka~~~~~~   90 (251)
T 1zud_1           13 ILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNL-QRQILFTTEDIDRPKSQVSQQR   90 (251)
T ss_dssp             HTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGT-TTCTTCCGGGTTSBHHHHHHHH
T ss_pred             cchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccC-CCCccCChhhCCCHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999 9999999999999999988754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=99.90  E-value=1.5e-24  Score=154.84  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             cccCCCcH-HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSIL-PYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~-~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      |++|+++. ++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +||| |+++|+|++|+++++++
T Consensus        20 i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL-~Rq~-~~~~diG~~Ka~aa~~~   97 (292)
T 3h8v_A           20 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRLF-FQPHQAGLSKVQAAEHT   97 (292)
T ss_dssp             ------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC--------------CCTTSBHHHHHHHH
T ss_pred             hcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhc-cccc-CChhhcCchHHHHHHHH
Confidence            67799998 999999999999999999999999999999999999999999999999 9996 58899999999998764

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=99.88  E-value=2e-23  Score=161.32  Aligned_cols=76  Identities=20%  Similarity=0.445  Sum_probs=71.7

Q ss_pred             cCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           7 TSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         7 ~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      ...+|.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+|+.+|+|++||++++++
T Consensus         4 i~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNL-nRQflf~~~dVGk~KAeaaa~~   79 (640)
T 1y8q_B            4 SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNL-NRQFLFQKKHVGRSKAQVAKES   79 (640)
T ss_dssp             --CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             hhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhc-CCCcCCChhHcChHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999 9999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.88  E-value=2.7e-23  Score=144.32  Aligned_cols=78  Identities=22%  Similarity=0.397  Sum_probs=73.6

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+|.++.++|++|++++|+|+|+|++|++++++|+++|+++|+++|.|.|+++|| +||++++++|+|++|+++++++
T Consensus        16 ~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka~~~~~~   93 (249)
T 1jw9_B           16 IILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL-QRQTLHSDATVGQPKVESARDA   93 (249)
T ss_dssp             HTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             ecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccC-CcccccChhhcCcHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999 9999999999999999987653

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=99.88  E-value=7.7e-24  Score=160.70  Aligned_cols=73  Identities=29%  Similarity=0.401  Sum_probs=70.5

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|.++|++|++++|+|+|+||+|+++++||+++||++|+|+|+|.|+.+|| +||||++.+|+|++||++++++
T Consensus        22 ~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL-~RQ~l~~~~dvG~~Ka~~a~~~   94 (531)
T 1tt5_A           22 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDA-GNNFFLQRSSIGKNRAEAAMEF   94 (531)
T ss_dssp             HHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHH-HHCTTCCGGGBTSBHHHHHHHH
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhc-ccCccCChhhcCcHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999 9999999999999999998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.86  E-value=2.2e-22  Score=146.01  Aligned_cols=74  Identities=23%  Similarity=0.458  Sum_probs=69.6

Q ss_pred             CCcHHH-HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPY-QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~-q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.+.++ |++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|+ +||++++++|+|++|+++++++
T Consensus       106 g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~  180 (353)
T 3h5n_A          106 GANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNL-TRQVLFSEDDVGKNKTEVIKRE  180 (353)
T ss_dssp             TCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             CCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCccccc-ccccCCChHHCCChHHHHHHHH
Confidence            445566 9999999999999999999999999999999999999999999999 9999999999999999988764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.86  E-value=3e-22  Score=145.52  Aligned_cols=75  Identities=25%  Similarity=0.390  Sum_probs=69.4

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      -++|+.+   |++|+++||+|+|+||+|++++++|+++||++|+|+|+|.|+.+|+ +|||+++.+|+|++|+++++++
T Consensus        22 Rll~~~g---~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL-~RQ~l~~~~diG~~Ka~aaa~~   96 (340)
T 3rui_A           22 RILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCGKPKAELAAAS   96 (340)
T ss_dssp             HTCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTST-TTSTTCCGGGTTSBHHHHHHHH
T ss_pred             hhcchhh---HHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccc-cccccCChhhcChHHHHHHHHH
Confidence            3456665   6799999999999999999999999999999999999999999999 9999999999999999988764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.8e-22  Score=160.84  Aligned_cols=73  Identities=27%  Similarity=0.479  Sum_probs=70.3

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|.++|++|++++|+|+|+||+||+++++|+++||     |+|+|+|+|.|+.+|| +|||+|+.+|+|++||++++++
T Consensus       415 ~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNL-nRQ~lf~~~dvG~~Ka~~aa~~  492 (1015)
T 3cmm_A          415 FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNL-NRQFLFRPKDVGKNKSEVAAEA  492 (1015)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGT-TTCTTCCGGGTTSBHHHHHHHH
T ss_pred             cCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccc-cccccCChhhCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999     9999999999999999 9999999999999999998764

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=99.85  E-value=4.4e-22  Score=148.15  Aligned_cols=71  Identities=28%  Similarity=0.466  Sum_probs=65.9

Q ss_pred             HHHH-HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          12 LPYQ-SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        12 ~~~q-~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+.| ..|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++||++++++
T Consensus        31 ~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL-~RQ~l~~~~diG~~Ka~~a~~~  102 (434)
T 1tt5_B           31 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEF  102 (434)
T ss_dssp             SSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGT-TTCTTCCGGGTTSBHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhcc-CCCcCCChhHcCcHHHHHHHHH
Confidence            3445 566999999999999999999999999999999999999999999 9999999999999999998764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.9e-22  Score=158.95  Aligned_cols=73  Identities=30%  Similarity=0.551  Sum_probs=70.8

Q ss_pred             CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +|.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+|| +||||++.+|+|++||++++++
T Consensus        17 ~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL-~RQ~l~~~~dvG~~Ka~a~~~~   89 (1015)
T 3cmm_A           17 LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADL-STQFFLTEKDIGQKRGDVTRAK   89 (1015)
T ss_dssp             SCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             cCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhh-ccccccChhhcChHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999 9999999999999999998764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.85  E-value=7.6e-22  Score=151.61  Aligned_cols=75  Identities=25%  Similarity=0.390  Sum_probs=69.4

Q ss_pred             cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+.|+.+   |++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|+ +||++++.+|+|++||++++++
T Consensus       315 rll~~~g---q~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL-~RQ~L~~~~DvG~~KAeaaa~~  389 (598)
T 3vh1_A          315 RILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCGKPKAELAAAS  389 (598)
T ss_dssp             HHCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTST-TTSTTCCSTTCSSBHHHHHHHH
T ss_pred             hccchhh---HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCccccccc-ccccccchhhcCcHHHHHHHHH
Confidence            3445554   7999999999999999999999999999999999999999999999 9999999999999999998764

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=99.85  E-value=5.9e-22  Score=154.50  Aligned_cols=72  Identities=28%  Similarity=0.460  Sum_probs=68.8

Q ss_pred             cHHHHHHh-hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          11 ILPYQSRL-RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        11 ~~~~q~~l-~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.++|+++ +++||+|+|+||+||+++++|+++||++|+|+|+|.|+.+|| +|||+++.+|+|++||++++++
T Consensus       401 g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl-~rq~~~~~~~vg~~Ka~~~~~~  473 (805)
T 2nvu_B          401 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEF  473 (805)
T ss_dssp             CSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             CHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeeccccc-ccccccchhhcCChHHHHHHHH
Confidence            67888887 999999999999999999999999999999999999999999 9999999999999999998764

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.83  E-value=2.7e-21  Score=148.92  Aligned_cols=74  Identities=26%  Similarity=0.406  Sum_probs=68.9

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      +.|+.+   |++|++++|+|+|+||+||+++++|+++||++|+|+|+|.|+.+|+ +||++++.+|+|++||++++++
T Consensus       315 llp~~g---~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL-~RQ~L~~~~dIG~~KAeaaa~~  388 (615)
T 4gsl_A          315 ILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCGKPKAELAAAS  388 (615)
T ss_dssp             TCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGG-GTSTTCCGGGTTSBHHHHHHHH
T ss_pred             hcchhh---HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCc-ccccCCChhhcChHHHHHHHHH
Confidence            456665   5699999999999999999999999999999999999999999999 9999999999999999998764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.00016  Score=45.56  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||+|..|..+|..|.+.|+. ++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ-VHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            35799999999999999999999995 9999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.47  E-value=0.00017  Score=43.81  Aligned_cols=38  Identities=24%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++..+|+|+|+|.+|..+++.|...|. +++++|.+.-
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~   40 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEE   40 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            4567799999999999999999999997 5889987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.34  E-value=0.00038  Score=42.83  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+..+|+|+|+|.+|..+++.|...|. +++++|.+.-
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~   40 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKE   40 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHH
Confidence            345799999999999999999999998 5999988643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.30  E-value=0.00044  Score=43.50  Aligned_cols=44  Identities=23%  Similarity=0.312  Sum_probs=34.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++....+|+|+|+|.+|..+++.|...|. +++++|.+.-....+
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~   58 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRL   58 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            45677899999999999999999999997 699998765433333

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.29  E-value=0.00031  Score=41.30  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+.-
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            468999999999999999999999667999987643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.26  E-value=0.00033  Score=49.15  Aligned_cols=38  Identities=21%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|+|+||+|..++..|...|++++++++.+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            35788999999999999999999999999999998763

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.16  E-value=0.00057  Score=47.91  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      .++.++++|+|+|+.|..++..|...|++++++++.+.-....+
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            46789999999999999999999999999999998765443333

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.15  E-value=0.0005  Score=50.68  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=35.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++.||+|+|+|..|..+++.|...|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            6789999999999999999999999999999999987

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.14  E-value=0.00058  Score=48.73  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|+|+||+|..++..|...|++++++++.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            578899999999999999999999999999999877

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.14  E-value=0.00072  Score=42.33  Aligned_cols=34  Identities=12%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            45789999999999999999999997 59999986

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.11  E-value=0.00054  Score=48.08  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..++|+|+|+|++|..++..|...|+.+++++|.+.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5678999999999999999999999999999998764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.10  E-value=0.00069  Score=48.29  Aligned_cols=36  Identities=22%  Similarity=0.552  Sum_probs=33.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|+|+||.|..++..|...|+++|++++.+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            567899999999999999999999999999999876

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.07  E-value=0.00069  Score=47.28  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=33.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+||.|..++..|...|+.++++++.+.
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5678999999999999999999999999999997753

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.07  E-value=0.0007  Score=47.63  Aligned_cols=37  Identities=8%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+||.|..++..|...|++++++++.+.
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5678999999999999999999999999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.07  E-value=0.00069  Score=47.23  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.||+|||+|..|..+|..|...|+. ++|+|.+.
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERNS   34 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            46899999999999999999999995 99998653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.07  E-value=0.00066  Score=50.21  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++..||+|+|+|..|..+++.|..+|+++|+++|..-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            67899999999999999999999999999999999974

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.05  E-value=0.0011  Score=41.04  Aligned_cols=35  Identities=17%  Similarity=0.462  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.+.-
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHH
Confidence            4589999999999999999999998 5999988654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.02  E-value=0.0011  Score=39.93  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            589999999999999999999996 599998754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.00  E-value=0.00084  Score=47.05  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=33.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+|+.|..++..|...|+.++++++.+.
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4678999999999999999999999999999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.98  E-value=0.0011  Score=45.75  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++|+|+|+|++|..+++.|...|+ +++++|.+.
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~  162 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTK  162 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            3577899999999999999999999999 899998764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.98  E-value=0.00086  Score=46.29  Aligned_cols=42  Identities=12%  Similarity=0.416  Sum_probs=35.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++. +++|+|+|+.|..+++.|...|+.+++++|.+.-....+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            456 999999999999999999999999999998865444444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.97  E-value=0.0013  Score=42.14  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.+.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH
Confidence            4567999999999999999999998 98 599998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.92  E-value=0.0011  Score=49.37  Aligned_cols=35  Identities=17%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCC--CcEEEEe
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGV--KSVCLLD   51 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D   51 (84)
                      .++..+|+|+|+|+.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4678899999999999999999999999  8999999

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.88  E-value=0.0014  Score=45.67  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=32.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++|+|+|+|+.+..++..|...|+.++++++.+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            357899999999999999999999999999998763

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.84  E-value=0.00063  Score=42.26  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+....+|+|+|+|++|..+++.|...|+. ++++|.+.
T Consensus        17 ~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~   54 (144)
T 3oj0_A           17 RKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNI   54 (144)
T ss_dssp             HHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCH
T ss_pred             HhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCH
Confidence            344588999999999999999999999988 99998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.84  E-value=0.0015  Score=46.36  Aligned_cols=43  Identities=16%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .....+..+..+|+|||+|..|..+|..|...|+. ++|+|.+.
T Consensus        14 ~~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~E~~~   56 (407)
T 3rp8_A           14 SGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGID-CDVYEAVK   56 (407)
T ss_dssp             ---------CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             CCCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            34455666788999999999999999999999995 99998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.77  E-value=0.0022  Score=42.25  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             CcHHHHHHhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          10 SILPYQSRLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        10 ~~~~~q~~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .....+.++++++|+|.|+ |++|.++++.|...|. ++++++.+.
T Consensus        11 ~~~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   55 (236)
T 3e8x_A           11 SSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE   55 (236)
T ss_dssp             ----------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             cccccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh
Confidence            3345567899999999995 9999999999999997 588887653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.77  E-value=0.0017  Score=44.65  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+|++|..+++.|...| .+++++|.+.
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~~  152 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTV  152 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECCH
Confidence            46789999999999999999999999 6899998753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.69  E-value=0.0022  Score=44.83  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++++|+|+||.|..++..|...| .++++++.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence            789999999999999999999999 8999997764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.66  E-value=0.0026  Score=44.11  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ...+|+|+|+|.+|+.++..|+..|. ++++++|.+.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999995 4799999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.66  E-value=0.0016  Score=44.95  Aligned_cols=36  Identities=11%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+|++|..++..|...| .+++++|.+.
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~  152 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTF  152 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCH
Confidence            46789999999999999999999999 7899998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.64  E-value=0.0024  Score=46.41  Aligned_cols=37  Identities=24%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|+|+|+|++|..+++.|...|+.+++++|...
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            6789999999999999999999999998899998754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.64  E-value=0.0029  Score=42.70  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++...+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            57889999999999999999999999997 599998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.60  E-value=0.0026  Score=43.35  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++. +|+|+|+|++|..+++.|...|+ +++++|.+.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~  149 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTP  149 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            456 99999999999999999999998 899998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.58  E-value=0.0029  Score=43.61  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.-|+|||+|..|+.+|..|++.|+. ++|+|..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er~   36 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLK-TLMIEKR   36 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            34699999999999999999999995 8999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.56  E-value=0.0038  Score=44.56  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=33.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|..|..+|..|+..|..+++|+|.....
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4689999999999999999999999669999987653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.54  E-value=0.0041  Score=39.24  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+|.|..|.+++..|...|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999998 599998754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.53  E-value=0.0034  Score=44.84  Aligned_cols=37  Identities=30%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|.|+|+|.+|+.++..|+..|..+++++|-+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            5677999999999999999999999987899998754

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.52  E-value=0.0034  Score=43.97  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++..|+..|...++++|.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            36899999999999999999999985699998754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.50  E-value=0.0028  Score=43.29  Aligned_cols=37  Identities=16%  Similarity=0.398  Sum_probs=33.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++.+|+|+|.|.+|...++.|..+|. ++++++++.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~   64 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTV   64 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            5789999999999999999999999998 599998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.49  E-value=0.0038  Score=43.30  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|+|.+|..+++.|...|. +++++|...
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~  188 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARES  188 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            4678999999999999999999999998 799998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.49  E-value=0.0038  Score=41.89  Aligned_cols=34  Identities=15%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d   53 (84)
                      ..+|.|+|+|.+|+.++++|...|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4589999999999999999999995   579999865

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.48  E-value=0.0043  Score=43.26  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|..|..+|..|+..|.+ ++|+|...+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999985 9999987543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.47  E-value=0.0041  Score=41.16  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++...+|.|+|+|.+|+.+++.|...|. +++++|.+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5677899999999999999999999997 58888765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.47  E-value=0.0039  Score=43.44  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|.+|+.+|..|+..|. +++++|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4689999999999999999999998 59999986543

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.47  E-value=0.003  Score=47.80  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGV--KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d~   54 (84)
                      ++|++.||++.|+|..|..+++.|+..|+  ++|.++|..-
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~G  255 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKG  255 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccc
Confidence            57899999999999999999999999999  8999999863

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.46  E-value=0.0037  Score=41.16  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|+|+|+|.+|..+++.|...|. .++++|.+.-
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH
Confidence            379999999999999999999998 5999987653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.45  E-value=0.0044  Score=44.05  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|...|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            56899999999999999999999996599998754

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.44  E-value=0.0037  Score=44.15  Aligned_cols=38  Identities=21%  Similarity=0.497  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +++..+|.|+|+|.+|..++..|+..|. .++.++|-+.
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4556799999999999999999998886 6799999653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.44  E-value=0.0038  Score=44.42  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|.|+|+|.+|+.++..|+..|..+++++|-+.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            3457999999999999999999999987899998764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.43  E-value=0.0028  Score=44.89  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....+|+|||+|..|..+|..|...|+ +++|+|...
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            456799999999999999999999998 599998754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.42  E-value=0.0052  Score=40.81  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +...|+|||+|..|.+.|..|...|.. ++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~-v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVR-VGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecC
Confidence            356899999999999999999999985 9999875

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.42  E-value=0.003  Score=48.04  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...++...|+|||+|..|..+|..|+..|+ +++|+|.+..
T Consensus        18 ~~~M~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~   57 (591)
T 3i3l_A           18 GSHMTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAF   57 (591)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCS
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCC
Confidence            344567899999999999999999999999 5999998754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.41  E-value=0.0044  Score=43.03  Aligned_cols=37  Identities=16%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|+|.+|..+++.|...|. +++++|...
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~  190 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSS  190 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            4678999999999999999999999998 799999764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.40  E-value=0.0047  Score=43.08  Aligned_cols=34  Identities=35%  Similarity=0.600  Sum_probs=30.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            479999999999999999999996 6799998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.40  E-value=0.0031  Score=43.58  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|..+++++|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46899999999999999999999975699999874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.37  E-value=0.0033  Score=43.59  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|.+|..+|..|+..|. +++|+|....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            3579999999999999999999998 5999998654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.37  E-value=0.0044  Score=42.79  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|+|++|+.++..|..+|. +++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            3689999999999999999999996 69999875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.37  E-value=0.0025  Score=44.10  Aligned_cols=35  Identities=14%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|+|+|++|.++++.|...|  +++++|.+.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~  160 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTV  160 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCH
Confidence            56789999999999999999999999  899998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.36  E-value=0.0041  Score=43.26  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|..|..+|..|+..|.+ ++|+|.+..-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~-V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCCCC
Confidence            35799999999999999999999984 9999987543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.35  E-value=0.0053  Score=43.11  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|...|+. ++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGID-NVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            46899999999999999999999995 99998765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.35  E-value=0.0052  Score=41.43  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++..|...|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            79999999999999999999997 699998754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.34  E-value=0.0036  Score=44.48  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..+|.|+|+|.+|+.++..|+..|.++++++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45789999999999999999999999789999987

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.34  E-value=0.004  Score=43.30  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ....|+|||+|..|..+|..|+..|. +++|+|.+.+.
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            45689999999999999999999998 59999987543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.34  E-value=0.0048  Score=43.10  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|+|+|.+|+.++..|..+|. .++++|.+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            3689999999999999999999996 699998765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.34  E-value=0.0067  Score=40.90  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +...+|.|+|+|.+|..+++.|...|...++++|.+.
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4557999999999999999999999986588888653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.32  E-value=0.0048  Score=42.97  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|+|+|.+|+.++..|..+|. .++++|.+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            3689999999999999999999996 699998765

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.32  E-value=0.005  Score=43.28  Aligned_cols=33  Identities=27%  Similarity=0.565  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|+|.+|+.++..|..+|. .++++|.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence            4689999999999999999999997 69999874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.31  E-value=0.0068  Score=42.96  Aligned_cols=38  Identities=29%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++..+|.|+|+|.+|..++++|...|. ++++.|.+.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~   49 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG   49 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh
Confidence            46788899999999999999999999997 588887653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.31  E-value=0.0054  Score=41.75  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|+|+|.+|+.++..|...|. +++++|.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCH
Confidence            589999999999999999999997 699998753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.30  E-value=0.0054  Score=42.18  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+.+|. +++++|.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            689999999999999999999998 599998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.29  E-value=0.0054  Score=43.53  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+....+|.|+|+|.+|+.++..|+..|...++++|.+.
T Consensus        10 ~~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           10 TVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            334456999999999999999999999984599998764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.29  E-value=0.0066  Score=41.16  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=31.8

Q ss_pred             HHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        14 ~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..=+..+|+|||+|..|..+|..|...|.. ++|+|...
T Consensus        16 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~-v~vie~~~   55 (338)
T 3itj_A           16 PRGSHVHNKVTIIGSGPAAHTAAIYLARAEIK-PILYEGMM   55 (338)
T ss_dssp             -----CEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             CCCCCCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            33444568999999999999999999999985 99998854

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.27  E-value=0.0056  Score=43.02  Aligned_cols=37  Identities=16%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|||+|..|..+|..|...|+ +++|+|....
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~   45 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSE   45 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Confidence            346799999999999999999999998 4999987543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=96.26  E-value=0.0038  Score=44.76  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=33.1

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC-Ccc
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS-GVV   55 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~-d~v   55 (84)
                      ...+....|+|||+|..|..+|..|+..|..+++|+|. +.+
T Consensus        18 ~~~m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~   59 (448)
T 3axb_A           18 GSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP   59 (448)
T ss_dssp             ---CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred             cccCCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence            34456678999999999999999999999337999998 554

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.26  E-value=0.0058  Score=42.20  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|.|+|+|.+|+.++..|+.+|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999997 59999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.25  E-value=0.0056  Score=43.79  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=32.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.+.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~  200 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV  200 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            667899999999999999999999999 799998753

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.25  E-value=0.0064  Score=42.93  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      .+||+|||+|..|..+|+.|.+.|-+ +|+|+|+..
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            57999999999999999999998864 799998754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.24  E-value=0.0044  Score=44.75  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|+..|+ +++|+|...
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            3689999999999999999999999 599998765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.22  E-value=0.0067  Score=42.41  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ....+|.|||+|.+|..++++|...|...++++|.+
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            345789999999999999999999998679999985

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.22  E-value=0.0069  Score=41.73  Aligned_cols=47  Identities=17%  Similarity=0.090  Sum_probs=27.1

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|......+++++.++|+|.|+ |.+|+.+++.|...|. +++.+|..
T Consensus         5 ~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A            5 HHHHHHSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             ----------------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             ccCCCCCCcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            44666677788999999999995 9999999999999996 47777654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.22  E-value=0.0068  Score=42.46  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      ...+|.|||+|.+|+.++.+|...|.   ..++++|.+.
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            34689999999999999999999995   6799998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.19  E-value=0.0025  Score=44.72  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=33.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+++.+|+|+|+|.+|...++.|...|.. ++++|++.-
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~-VtViap~~~   47 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCK-LTLVSPDLH   47 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCE-EEEEEEEEC
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCE-EEEEcCCCC
Confidence            46789999999999999999999999975 999998653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.19  E-value=0.0067  Score=43.10  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+..|...++++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            5899999999999999999999984499998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.19  E-value=0.0055  Score=41.96  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|..+|..|+..|. +++|+|.+.
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            3579999999999999999999999 599999873

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.18  E-value=0.0061  Score=40.60  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...|. +++++|...
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            589999999999999999999997 699999753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.16  E-value=0.007  Score=41.65  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| +||+|.++++.|...|.. ++++|.+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~  153 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKL  153 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCH
Confidence            5678999999 999999999999999986 99988753

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.15  E-value=0.0078  Score=42.27  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..|+|||+|..|..+|..|+..|.+ ++|+|....
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~-V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHR-VLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCC
Confidence            5799999999999999999999985 999998654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.15  E-value=0.0065  Score=43.76  Aligned_cols=36  Identities=22%  Similarity=0.495  Sum_probs=31.8

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      +...||.|+|+ |.+|+.++..|+..|. .++.++|-+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            45679999997 9999999999999997 589999975

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.14  E-value=0.0051  Score=41.87  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|.. ++++|...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~~   36 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLS-YVILDAEA   36 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCC-EEEECCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCC
Confidence            46899999999999999999999985 99998763

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.13  E-value=0.0069  Score=43.65  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|+|++|..+++.+...|. +++++|...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~  201 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINI  201 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            4788999999999999999999999999 699998754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.13  E-value=0.0075  Score=43.15  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      -...+|.|+|+|.+|+.++..|+..|+ +++.++|.+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            345789999999999999999999998 689999974

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.12  E-value=0.0076  Score=41.95  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|.+|+.++..|...|. +++++|.+.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            3689999999999999999999997 599998753

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.12  E-value=0.0073  Score=42.67  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||.|+|+|.+|+.++..|...+. +++.|+|-..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            479999999999999999998885 8899999643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.10  E-value=0.0096  Score=39.42  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4689999999999999999999997 588888753

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.10  E-value=0.0068  Score=42.91  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|...|+ +++|+|....
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            5689999999999999999999998 5999987643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.09  E-value=0.0073  Score=45.61  Aligned_cols=38  Identities=13%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhC-C--CcEEEEeCCccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSG-V--KSVCLLDSGVVT   56 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~G-v--~~i~l~D~d~v~   56 (84)
                      -+.||+|+|+|++|+.++..|+... +  ..|+++|.+...
T Consensus        12 ~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~   52 (480)
T 2ph5_A           12 FKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK   52 (480)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh
Confidence            3578999999999999999999864 5  589999987654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.07  E-value=0.0054  Score=43.28  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|..|..+|..|+..|+ +++|+|.+..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3689999999999999999999999 5999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.05  E-value=0.0098  Score=42.39  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v   55 (84)
                      +++|+|||+|..|..+|..|...|.. +++++|....
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   37 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKH   37 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            46899999999999999999999985 7999998763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.05  E-value=0.0094  Score=39.96  Aligned_cols=33  Identities=15%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++++|...|...++++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            799999999999999999999944688988753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.04  E-value=0.0098  Score=43.56  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH
Confidence            46899999999999999999999985 999988754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.03  E-value=0.0083  Score=42.96  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+...+|+|+|+|++|..+++.+...|. +++++|.+.
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~  199 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNH  199 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            3678999999999999999999999999 699998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.01  E-value=0.0062  Score=41.49  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|...
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   49 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGF-SVAILDKAV   49 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            4689999999999999999999998 499999853

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.01  E-value=0.0094  Score=42.56  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++..|+..|. ++++++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4689999999999999999999997 6899999753

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.99  E-value=0.0097  Score=41.16  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999997 599998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.99  E-value=0.0097  Score=40.29  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.+++.|...|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999998 689988753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.98  E-value=0.0091  Score=41.62  Aligned_cols=33  Identities=24%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|+|+|.+|+.++..|. .|. ++++++.+.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCH
Confidence            468999999999999999999 885 699998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.98  E-value=0.01  Score=41.55  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||.|+|+|.+|+.++..|+..|. ++++++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999999985 5799998764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.97  E-value=0.01  Score=40.91  Aligned_cols=37  Identities=19%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV--KSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d~v   55 (84)
                      +..+|.|+|+|..|+.+++.|...|.  .+++++|.+.-
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            35789999999999999999999996  36999987643

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.95  E-value=0.012  Score=39.51  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.++|+|.|+|.+|+++++.|...|. +++.++..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~   35 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRS   35 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35689999999999999999999997 47777654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.94  E-value=0.011  Score=39.60  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++++|...|.   .+++++|.+.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            589999999999999999999997   4799998754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=95.92  E-value=0.011  Score=46.22  Aligned_cols=36  Identities=28%  Similarity=0.607  Sum_probs=32.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|.+|+.+|..|+..|..+++|+|.+..
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            578999999999999999999999866999998765

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=95.91  E-value=0.011  Score=43.72  Aligned_cols=37  Identities=24%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +-+...|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~-v~vlE~~~   44 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVE-VVVLERLV   44 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            34567899999999999999999999995 89998653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.91  E-value=0.0089  Score=41.77  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d~v~   56 (84)
                      +..|+|||+|..|..+|..|+. .|..+++|+|...+.
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4689999999999999999999 993369999987643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=95.91  E-value=0.011  Score=43.73  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|+.   .|+ +++|+|.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   998 5999998654

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.90  E-value=0.011  Score=41.58  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||.|+|+|.+|..++..|+..|.+++.|+|-+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            689999999999999999999996699998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.89  E-value=0.0088  Score=41.62  Aligned_cols=38  Identities=13%  Similarity=0.306  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+..+|.|+|+|.+|+.++++|...|. +++++|.+.-
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   55 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLS   55 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGG
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            3345789999999999999999999997 6999987643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.89  E-value=0.011  Score=41.70  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|+. ++|+|.+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~-V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHR-VVVVEQAR   39 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            35899999999999999999999995 99998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.86  E-value=0.013  Score=40.15  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|.|+|+|.+|+.++++|...|. +++++|.+.-
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            589999999999999999999996 6899987644

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=95.86  E-value=0.011  Score=43.44  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|.+|+.+|..|+..|.+ ++|+|.+.+.
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~-V~llE~~~~~   38 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLS-VLMLEAQDLA   38 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC-EEEEECCCCC
Confidence            46899999999999999999999985 9999886543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.86  E-value=0.012  Score=40.25  Aligned_cols=34  Identities=32%  Similarity=0.466  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|..++++|...|. +++++|.+.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3689999999999999999999997 588888754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.85  E-value=0.013  Score=39.82  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ++|.|+|+|.+|..+++.|...|.. +++++|.+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            4799999999999999999999963 588888753

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.84  E-value=0.014  Score=38.78  Aligned_cols=37  Identities=16%  Similarity=0.495  Sum_probs=31.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|...+.++|.+.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            4667899998 789999999999999987688887653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.82  E-value=0.0092  Score=41.76  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +....+|.|+|+|.+|..++++|...|. +++++|.+.-
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   65 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPA   65 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHH
Confidence            3455699999999999999999999997 5999987643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.81  E-value=0.014  Score=41.10  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++..|...|. +++.++|-+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4689999999999999999998884 6799999764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.81  E-value=0.011  Score=42.83  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|+|+|+|.+|..+++.|...|.. +++.|.+.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~~~  206 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNK  206 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            36789999999999999999999999995 77888754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.80  E-value=0.011  Score=42.27  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=32.8

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +.....+|.|+|+|.+|+.++..|+..|. .++.|+|-+.
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            45677899999999999999999999997 5799999653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.80  E-value=0.013  Score=41.28  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ..+|.|||+|.+|..+++.|...|.. +++++|.+.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            37899999999999999999999984 699998764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.79  E-value=0.014  Score=41.09  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            379999999999999999999995 4699998763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.79  E-value=0.0091  Score=41.22  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..|+|||+|..|..+|..|+ .|. +++|+|..
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~   40 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLERE   40 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECC
Confidence            4679999999999999999999 587 59999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.76  E-value=0.013  Score=40.55  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSG-----VKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~G-----v~~i~l~D~d~v   55 (84)
                      .|+|||+|.+|..+|..|+..|     -.+++|+|...+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            6999999999999999999998     136999998764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.75  E-value=0.014  Score=40.63  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..+|.|||+|.+|..++++|...|. +++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45789999999999999999999998 589988754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.74  E-value=0.014  Score=39.73  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            79999999999999999999997 588988754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=95.73  E-value=0.011  Score=43.71  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~-v~vlE~~~   45 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVD-VMVLEQLP   45 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCC
Confidence            567899999999999999999999996 89998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.72  E-value=0.004  Score=46.14  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKE   58 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~   58 (84)
                      .+||+|+|+|.+|..+++.|...|. .++++|.|.-...
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~~~   40 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDRLR   40 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHH
Confidence            3589999999999999999998887 4999998754433

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.72  E-value=0.016  Score=38.80  Aligned_cols=46  Identities=24%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CCCcHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593           8 SSSILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |.+....+.+...++|+|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        10 ~~~~~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~   56 (251)
T 3orf_A           10 HSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRE   56 (251)
T ss_dssp             ------------CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             ccccccccccccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            33444445566678899998 689999999999999985 88887654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.72  E-value=0.015  Score=43.41  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|+.   .|+ +++|+|.+..
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            5689999999999999999999   888 6999998654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.71  E-value=0.017  Score=36.57  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|.|+ |++|.++++.|...|. ++++++.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeCh
Confidence            68999996 9999999999999995 688887654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.70  E-value=0.015  Score=37.69  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             cEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+|+| +|.+|+.+++.|...|. +++++|.+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            799999 99999999999999997 688888753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.70  E-value=0.012  Score=40.09  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|...
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   38 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPLP   38 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            4689999999999999999999998 599999753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.69  E-value=0.017  Score=38.83  Aligned_cols=33  Identities=9%  Similarity=0.088  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|..+|..|...|.. ++++|..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK-TLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc-EEEEecc
Confidence            46899999999999999999999985 9999986

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.69  E-value=0.017  Score=40.09  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             HHhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++.++|+|.|+ |.+|..+++.|...|..++++++..
T Consensus        42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4466789999995 9999999999999995568888764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.68  E-value=0.015  Score=41.11  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++..|+..|.-.+.++|-+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            5899999999999999999999984499998653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.68  E-value=0.017  Score=39.51  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++|.|+|+|.+|+.++++|...|. +++++|.+.-
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            489999999999999999999996 5999987643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.68  E-value=0.014  Score=40.22  Aligned_cols=30  Identities=13%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +|.|+|+|.+|+.++.+|...|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            79999999999999999999997 6999987

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.67  E-value=0.0048  Score=40.93  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.+.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH
Confidence            35689999999999999999998887  88998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.66  E-value=0.017  Score=39.92  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            689999999999999999999997 589988754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.66  E-value=0.013  Score=42.74  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|+|+|.+|..+++.+...|. +++++|...-
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~  206 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPE  206 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            567899999999999999999999998 6999987643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.65  E-value=0.015  Score=40.69  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .-...+|.|+|+|.+|+.++.+|+.+|. +++++|.+.
T Consensus        11 ~~~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~   47 (335)
T 1z82_A           11 HHMEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRK   47 (335)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             cccCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            4467899999999999999999999997 599998753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.65  E-value=0.011  Score=43.19  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d~v   55 (84)
                      .+|+|||+|..|..+|..|+.   .|+ +++|+|.+..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~-~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRI-DVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGS-EEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCC-EEEEEecCCC
Confidence            589999999999999999999   999 6999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.64  E-value=0.017  Score=39.04  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...|..+++++|.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~   35 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM   35 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC
Confidence            3799999999999999999999984599999863

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.64  E-value=0.015  Score=41.10  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~  175 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILD  175 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            5778899999999999999999999997 488888654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.62  E-value=0.014  Score=44.10  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |..++|+|+|+|++|..+++.|...|. ++.++|.+.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~  298 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDP  298 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            678899999999999999999999999 688888764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.61  E-value=0.017  Score=41.17  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~v   55 (84)
                      ..|+|||+|..|..+|..|+..  |.+ ++|+|....
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~-V~vlE~~~~   72 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRS-LLLVEEGGL   72 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSSCS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCe-EEEEeCCCC
Confidence            5799999999999999999999  985 999997654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=95.61  E-value=0.013  Score=43.87  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|+|+||+|..+++.|...|. ++++++.+
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~  396 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRT  396 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC--CEEEESS
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567899999999999999999999999 79998765

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.59  E-value=0.019  Score=40.31  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++..|+..|.-.+.++|-+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            5899999999999999999999973499998653

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.59  E-value=0.02  Score=40.45  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..||.|+|+|.+|..++..|+..|. +++.++|-+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999885 6799998753

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.58  E-value=0.016  Score=40.81  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  155 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSS  155 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSC
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCc-EEEEEeccc
Confidence            4788999999999999999999999998 488888654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.58  E-value=0.015  Score=42.24  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=30.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhC-C-CcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSG-V-KSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~G-v-~~i~l~D~d~v~   56 (84)
                      ++|+|+|+|++|.++++.|+..| + ..+++.|.+.-.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~   39 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSK   39 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHH
Confidence            48999999999999999999888 3 589999876433

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.57  E-value=0.013  Score=43.58  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+.+++|.|+|+|..|+.++.+|+..|. +++++|.+.
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~   48 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSR   48 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSH
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            346788999999999999999999999998 589998753

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.57  E-value=0.015  Score=38.88  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             cHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          11 ILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+.+..+++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        10 ~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~   53 (249)
T 1o5i_A           10 HHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNE   53 (249)
T ss_dssp             ------CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             hhhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            34456788899999998 689999999999999974 88887654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.56  E-value=0.021  Score=40.01  Aligned_cols=38  Identities=16%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      .+++++|+|.| .|++|+++++.|... |..++++++.+.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~   57 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE   57 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh
Confidence            46778999999 699999999999999 987899988764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=95.56  E-value=0.012  Score=43.46  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|..|..+|..|...|+. ++|+|.+..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~-v~viEr~~~   39 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVR-VLVVERRPG   39 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            46899999999999999999999995 999987643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.56  E-value=0.011  Score=42.82  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|..|+.+|..|+..|+. ++|+|....
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~-V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLK-ILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCC-EEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence            46899999999999999999999995 999987653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.55  E-value=0.019  Score=40.84  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|.. +..+|...
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  179 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVFE  179 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            58889999999999999999999999985 88888643

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=95.54  E-value=0.038  Score=41.50  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=36.2

Q ss_pred             CCCcHHHHHHhh--cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593           8 SSSILPYQSRLR--ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus         8 ~~~~~~~q~~l~--~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      |....+..++++  ...|+|||+|..|+.+|..|+..|.+ +.|+|.+.+
T Consensus         4 ~~~r~~~~~~m~~~~~DVvVIGgGi~Gl~~A~~La~~G~~-V~LlEk~d~   52 (561)
T 3da1_A            4 AKKRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVRGIQ-TGLVEMNDF   52 (561)
T ss_dssp             TTCHHHHHHHHTTSCEEEEEECCSHHHHHHHHHHHTTTCC-EEEEESSST
T ss_pred             hhHHHHHHHhccCCCCCEEEECCCHHHHHHHHHHHhCCCc-EEEEECCCC
Confidence            333344445554  35799999999999999999999995 999988744

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.54  E-value=0.014  Score=39.02  Aligned_cols=37  Identities=24%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcC-C-hhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGV-E-GVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~-g-g~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.|+ | |+|.++++.|+..|.. +.++|.+.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~   57 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHE   57 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCH
Confidence            578889999997 6 8999999999999985 88887653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.014  Score=41.47  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.1

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~  179 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHR  179 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            36788999999999999999999999997 588888654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.017  Score=40.68  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~  175 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYP  175 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            5788999999999999999999999997 488888654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.54  E-value=0.014  Score=39.06  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEE-EeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCL-LDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l-~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|.. +++ +|.+.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~li~e~~~   38 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLK-NVVMFEKGM   38 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCS-CEEEECSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCC-eEEEEeCCC
Confidence            35899999999999999999999986 677 88754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.54  E-value=0.02  Score=40.30  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||.|+|+|.+|+.++..|+..|. ++++++|-+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            379999999999999999999986 4799999765

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.53  E-value=0.019  Score=40.88  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~  179 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFR  179 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            5788999999999999999999999998 488888654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.52  E-value=0.0081  Score=42.02  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC------CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV------KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv------~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++..|+..|.      .+++++|.+.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcCh
Confidence            3589999999999999999999992      4689998654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.52  E-value=0.019  Score=40.84  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|.. +..+|...
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  178 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYP  178 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            57889999999999999999999999985 88888654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.51  E-value=0.016  Score=41.05  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  188 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQ  188 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            4778899999999999999999999998 488888643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.51  E-value=0.019  Score=38.70  Aligned_cols=34  Identities=26%  Similarity=0.109  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|...
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            4689999999999999999999998 599998853

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.50  E-value=0.015  Score=38.56  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEE-EeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCL-LDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l-~D~d~   54 (84)
                      ..+|.|+|+|.+|..+++.|...|.. +++ +|.+.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP-AIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC-EEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCCH
Confidence            46899999999999999999999984 777 76653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.48  E-value=0.018  Score=41.39  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      ...+|.|+|+|.+|+.++..|+..|+ +++.++|-+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            45799999999999999999999997 689999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.48  E-value=0.017  Score=40.97  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  183 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR  183 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence            5778899999999999999999999997 588888654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.47  E-value=0.019  Score=41.27  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++..+|.|||+|.+|..++++|...|. .++++|.+.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            456799999999999999999999996 589998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.47  E-value=0.017  Score=41.65  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      ...+|+|||+|..|..+|+.|...|.. +++++|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~   40 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   40 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC
Confidence            357899999999999999999999973 69999875

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.47  E-value=0.016  Score=41.77  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|+|.+|..+++.|...|..++..+|...
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~  198 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQA  198 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSC
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            57889999999999999999999999975588888543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.47  E-value=0.017  Score=39.02  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++++|.. |. +++++|.+.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCH
Confidence            479999999999999999999 87 588988653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.46  E-value=0.022  Score=40.76  Aligned_cols=36  Identities=6%  Similarity=0.203  Sum_probs=32.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ...+|+|||+|..|..+|..|...|.. +++++|.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   42 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   42 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC
Confidence            356899999999999999999999985 799999765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.44  E-value=0.022  Score=41.44  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|+..|.+ ++|+|...
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~-V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRR-VLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            46899999999999999999999985 99998765

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.43  E-value=0.02  Score=40.83  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+..++|.|+|.|.+|.++++.|...|. ++..+|...
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  170 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTG  170 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence            35888999999999999999999999998 488888653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.012  Score=43.76  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++|+|+|+|++|..+++.|...|--+++++|.+.
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~   57 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL   57 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            45677999999999999999999988433699998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.43  E-value=0.013  Score=40.01  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+|+|||+|..|..+|..|...|.. ++++|.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEG   39 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe-EEEEec
Confidence            46899999999999999999999985 999987

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.42  E-value=0.02  Score=42.22  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +.+|+|||+|..|..+|..|+..|+ +++|+|.....
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~-~V~liE~~~~~   42 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGH-RVLLLEREAFP   42 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-CEEEEccCCCC
Confidence            4689999999999999999999999 59999987643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.42  E-value=0.016  Score=40.71  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|..++++|...|..+++++|.+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46899999999999999999999944799998764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.41  E-value=0.021  Score=40.50  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=32.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|.++++.|...|.. +..+|...
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~~  172 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRSR  172 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESSC
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCc
Confidence            57889999999999999999999999984 88887643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=95.41  E-value=0.024  Score=38.70  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      .+..|+|||+|..|.++|..|+.. |.+ ++++|...
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~-V~viEk~~   73 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQSV   73 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCe-EEEEECCC
Confidence            456899999999999999999996 884 99998754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.41  E-value=0.021  Score=38.94  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++++|...|. +++++|.+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            589999999999999999999997 588888753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.40  E-value=0.02  Score=43.24  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +..|+|||+|.+|..+|..|.+.|+. ++|+|....
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~-V~VlEr~~~   83 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVG-ALVLEKLVE   83 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCC-EEEEBSCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEcCCCC
Confidence            46899999999999999999999995 999987543

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.40  E-value=0.02  Score=40.32  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...  |+ +++|+|...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~   35 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW-AIDIVEKND   35 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCC
Confidence            3699999999999999999999  98 599998653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.40  E-value=0.021  Score=40.49  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d~   54 (84)
                      ++|+|||+|..|.++|..|..   .|. +++|+|...
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCC
Confidence            479999999999999999999   777 599998765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.40  E-value=0.016  Score=40.08  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|.|+|+|.+|..++++|...|. +++++|.+.-
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            4689999999999999999999997 5999986543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.39  E-value=0.02  Score=42.27  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|.++|..|...|+ +++|+|..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~  124 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKR  124 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC-eEEEEEec
Confidence            5689999999999999999999998 59999865

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.39  E-value=0.024  Score=40.27  Aligned_cols=34  Identities=32%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+..|. .+++++|-+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            479999999999999999999997 5899998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.39  E-value=0.018  Score=39.26  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|...
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   41 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQL-STLILEKGM   41 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            4689999999999999999999998 599999873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.39  E-value=0.017  Score=41.56  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+...+|+|+|+|++|..+++.+...|.. ++++|...-
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~~~d~~~~  206 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAA  206 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence            45788999999999999999999999985 999987543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.39  E-value=0.02  Score=39.63  Aligned_cols=32  Identities=28%  Similarity=0.522  Sum_probs=29.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|.|+| +|.+|+.+++.|...|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 58898865

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.38  E-value=0.021  Score=39.97  Aligned_cols=37  Identities=8%  Similarity=0.016  Sum_probs=32.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      ....+|.|+|+|..|..++++|... |+.++.++|.+.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~  170 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTK  170 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            4567899999999999999999987 888999998764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=95.37  E-value=0.023  Score=42.74  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ...|+|||+|.+|+.+|..|+..|.+ ++|+|.+.+.
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~-V~LlE~~~~~   67 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIK-TGLIEMQDFA   67 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCCC
Confidence            46899999999999999999999985 9999876543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.36  E-value=0.02  Score=40.85  Aligned_cols=37  Identities=11%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~  197 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSK  197 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            5778899999999999999999999998 488888653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.36  E-value=0.021  Score=40.29  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~  177 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTP  177 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            5788899999999999999999999997 588888643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.35  E-value=0.025  Score=40.78  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .+||+|||+|..|..+|+.|...+- .+|+|+|...
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            4689999999999999999998774 3699998753

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.34  E-value=0.018  Score=38.98  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..++.++++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus         5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~   43 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRC   43 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            3467888999998 789999999999999985 8888864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.34  E-value=0.023  Score=38.78  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+ |.+|+.+++.|...|. +++++|.+.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            58999999 9999999999999997 688988753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.33  E-value=0.014  Score=39.24  Aligned_cols=39  Identities=31%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..+++++|+|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~   63 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDV   63 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCH
Confidence            4456778899998 699999999999999985 88887654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.043  Score=37.66  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             HHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCC--cEEEEeCCc
Q psy9593          13 PYQSRLRATKILLIG-VEGVGAEIAKNIILSGVK--SVCLLDSGV   54 (84)
Q Consensus        13 ~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~--~i~l~D~d~   54 (84)
                      .....+++++++|.| .+|+|.++++.|+..|.+  ++.+.|.+.
T Consensus        26 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~   70 (287)
T 3rku_A           26 KAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL   70 (287)
T ss_dssp             HHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH
Confidence            345678999999998 789999999999999874  677777643

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.32  E-value=0.027  Score=39.87  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      +.||.|+|+|.+|..++..|+..+. .+|.|+|-+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            3689999999999999999998884 579999975

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.32  E-value=0.021  Score=40.97  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 599998763

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.31  E-value=0.024  Score=39.55  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=26.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      ....+|+|+|+|.+|+.++..|+..|. .++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            456799999999999999999999997 57777

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.31  E-value=0.022  Score=43.65  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~  296 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGA-VVTLYCAD  296 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            4689999999999999999999998 59999985

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.31  E-value=0.016  Score=38.77  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+.+++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   48 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQ   48 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            457778899998 78999999999999997 588887653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.31  E-value=0.021  Score=41.90  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=33.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|+|+|.+|..+++.+...|. +++++|...-
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~  218 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPE  218 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGG
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            477899999999999999999999998 5999987654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.27  E-value=0.029  Score=38.18  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.+++.|...|. .+++++|.+.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4689999999999999999999963 3688888653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.26  E-value=0.029  Score=40.12  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v   55 (84)
                      ++|+|||+|..|..+|..|...|.. +++++|.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPH   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCC
Confidence            5899999999999999999999984 7999987654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.26  E-value=0.019  Score=42.42  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..++|+|+|+|++|..+++.|...|. +++++|.+.-
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~   37 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLE   37 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHH
Confidence            35689999999999999999999996 5999987643

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.26  E-value=0.026  Score=37.37  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~   43 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINA   43 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            46788899998 699999999999999985 88887654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.25  E-value=0.021  Score=40.12  Aligned_cols=35  Identities=31%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -..++|.|+|+|-.|+.+|.+|+ +|. .++++|.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~   44 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSE   44 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCH
Confidence            35689999999999999999999 998 599998754

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.24  E-value=0.017  Score=39.21  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      .+|.|+|+|.+|+.++++|...|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            489999999999999999999997 588887

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=95.24  E-value=0.023  Score=42.37  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~-V~vlEr~~   59 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVG-HLVVEQTD   59 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            45799999999999999999999996 99998653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.23  E-value=0.026  Score=40.71  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +..+|+|||+|..|...|..|...+. .+++++|...
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            35789999999999999999999854 3699998765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.23  E-value=0.022  Score=40.65  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v   55 (84)
                      ++.+|+|||+|..|..+|..|...|.. +++++|...-
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   45 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPE   45 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCC
Confidence            356899999999999999999999984 7999988654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.22  E-value=0.016  Score=41.21  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC------CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV------KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv------~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+.+|.      .+++++|.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECCh
Confidence            479999999999999999999992      4699998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.22  E-value=0.027  Score=40.18  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|-.|+-+|..++.+|.. ++++|.+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            45899999999999999999999995 99999753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.21  E-value=0.017  Score=39.07  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CCCcHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593           8 SSSILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus         8 ~~~~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |....+-+..++.++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         9 ~~~~~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~   54 (267)
T 1vl8_A            9 HHHHMKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRN   54 (267)
T ss_dssp             --------CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            33344455678888999998 789999999999999974 8888765

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.19  E-value=0.02  Score=38.38  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++++|...|. .+.++|.+.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCH
Confidence            589999999999999999999984 688888754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=95.19  E-value=0.023  Score=39.33  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|..|..+|..|...|. +++|+|..
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   46 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESM   46 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            35689999999999999999999998 59999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.18  E-value=0.016  Score=39.99  Aligned_cols=32  Identities=16%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d   53 (84)
                      .+|+|||+|..|..+|..|..   .|+ +++++|..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~-~V~v~Ek~   36 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKA   36 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE-EEEEECSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc-eEEEEECC
Confidence            479999999999999999999   898 59999865

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.17  E-value=0.01  Score=40.34  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=32.2

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..++.++++|.| .||+|.++++.|+..|.. +.+.|.+.
T Consensus        22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~   61 (266)
T 3grp_A           22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTRE   61 (266)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            3467788899998 789999999999999974 88877643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.17  E-value=0.028  Score=40.74  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|.+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~   37 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERGT   37 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4689999999999999999999997 699999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.17  E-value=0.018  Score=42.51  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++.+|+|+|.|.+|...++.|...|. +++++|++.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~   45 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCC
Confidence            3678899999999999999999999997 599999854

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.17  E-value=0.027  Score=40.63  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ..+|+|||+|..|.++|..|...|.. +++++|.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~   39 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   39 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCC
Confidence            46899999999999999999999985 799998754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.16  E-value=0.025  Score=40.34  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|.++++.|...|. ++..+|...
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            5788999999999999999999999998 488888654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.15  E-value=0.044  Score=35.74  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      .+..++|+|.| .|++|.++++.|...|.- +++++|.+.
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~   54 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   54 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCC
Confidence            36678999999 799999999999999973 588887643

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.15  E-value=0.034  Score=37.08  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=33.6

Q ss_pred             HHHHHHhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          12 LPYQSRLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+-.++.++++|.|++   |+|.++++.|+..|.. +.+++.+.
T Consensus        12 ~~~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~   56 (267)
T 3gdg_A           12 LLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASR   56 (267)
T ss_dssp             HHHHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSS
T ss_pred             cccccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCc
Confidence            444557888999999964   9999999999999985 77776543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=95.15  E-value=0.024  Score=43.55  Aligned_cols=40  Identities=30%  Similarity=0.485  Sum_probs=35.5

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHH----hCC------CcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIIL----SGV------KSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l----~Gv------~~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|..|..+++.|..    .|+      ++|.++|..-+
T Consensus       278 k~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gl  327 (555)
T 1gq2_A          278 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL  327 (555)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCe
Confidence            57899999999999999999999998    796      79999998544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.15  E-value=0.03  Score=39.13  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++..|+..+. .+++++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            379999999999999999998753 4699998764

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.15  E-value=0.023  Score=40.23  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+..++|.|+|+|.+|..+++.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5788899999999999999999998887 5888887

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.14  E-value=0.023  Score=41.97  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.+|.|+|+|.+|+.++.+|+.+|. .++++|.+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            4579999999999999999999998 599998753

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=95.14  E-value=0.03  Score=37.50  Aligned_cols=37  Identities=27%  Similarity=0.551  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~   42 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDI   42 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            46778899998 789999999999999985 88887653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.14  E-value=0.024  Score=41.25  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=33.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .......|+|||+|..|...|..|...|.+ ++|+|.+.+
T Consensus        16 ~~~~~~dVvIIGgG~aGl~aA~~la~~G~~-V~liE~~~~   54 (478)
T 3dk9_A           16 GAVASYDYLVIGGGSGGLASARRAAELGAR-AAVVESHKL   54 (478)
T ss_dssp             -CEEECSEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             ccCCCCCEEEECCCHHHHHHHHHHHhCCCe-EEEEecCCC
Confidence            344567999999999999999999999985 999997654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.14  E-value=0.03  Score=37.43  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=31.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|++++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   46 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNE   46 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            57888999998 689999999999999984 88887653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.13  E-value=0.03  Score=38.10  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             HHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          12 LPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+..++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus        16 ~~~~~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~   58 (279)
T 3sju_A           16 PRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDA   58 (279)
T ss_dssp             ---------CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCcccccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            3344556778889998 789999999999999985 88887653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.13  E-value=0.021  Score=40.58  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.||+|+|+|.+|..+++.|..  -..+++.|.+.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~--~~~v~~~~~~~   48 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD--EFDVYIGDVNN   48 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCH
T ss_pred             CccEEEEECCCHHHHHHHHHHhc--CCCeEEEEcCH
Confidence            45689999999999999999864  35788887654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.13  E-value=0.039  Score=37.57  Aligned_cols=43  Identities=30%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             cHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          11 ILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+....++.++++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus        24 ~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   67 (275)
T 4imr_A           24 RLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKP   67 (275)
T ss_dssp             SHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             cccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            34555668888999998 78999999999999998 488887643

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.13  E-value=0.025  Score=37.88  Aligned_cols=30  Identities=23%  Similarity=0.293  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +|.|+|+|.+|+.++++|...|. +++++|.
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence            79999999999999999999997 5887765

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=95.12  E-value=0.011  Score=39.23  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+++++|+|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~   48 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNE   48 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            3467888999998 789999999999999974 88887654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.12  E-value=0.025  Score=40.62  Aligned_cols=38  Identities=18%  Similarity=0.305  Sum_probs=33.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  204 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRST  204 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCc
Confidence            36788999999999999999999999998 488887654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.10  E-value=0.036  Score=35.41  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=27.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|.| .|.+|.++++.|...|. ++++++.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc
Confidence            3799999 59999999999999996 588887653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.10  E-value=0.031  Score=37.60  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++++|.| .+|+|.++++.|+..|.. +.++|..
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEccc
Confidence            57788999998 789999999999999985 8888754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=95.09  E-value=0.023  Score=39.68  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+.||.+||+|-.|..+++||+.+|.. ++++|.+.-
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~-V~v~dr~~~   39 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYE-LVVWNRTAS   39 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCE-EEEC-----
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCe-EEEEeCCHH
Confidence            346899999999999999999999985 888886543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.09  E-value=0.025  Score=41.03  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|...  |. +++++|.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~-~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEA-HVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTS-EEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCc
Confidence            46899999999999999999998  64 6999987654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.09  E-value=0.025  Score=40.51  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      ..+|+|||+|-.|...|..|...|.. +++|++..
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~   36 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESS   36 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSS
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            36899999999999999999999974 69999873

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.09  E-value=0.035  Score=38.23  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             HHHHHhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          13 PYQSRLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        13 ~~q~~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .....++.++|+|.|+ |.+|.++++.|...|. +++.+|..
T Consensus        20 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   60 (343)
T 2b69_A           20 QGHMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF   60 (343)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3345677889999995 9999999999999996 57777653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.08  E-value=0.027  Score=39.59  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~  157 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP  157 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            5788999999999999999999999997 488888643

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.08  E-value=0.034  Score=37.08  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~   50 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIAD   50 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCh
Confidence            46788999998 78999999999999997 588877643

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.06  E-value=0.032  Score=39.59  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      +..||.|+|+|.+|..++..|+..+. .++.|+|-+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            34689999999999999999998884 579999975

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.05  E-value=0.027  Score=40.28  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNII-LSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~-l~Gv~~i~l~D~d~   54 (84)
                      .+..++|.|+|+|.+|..+++.|. ..|. ++..+|...
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~  197 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAP  197 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCC
Confidence            578899999999999999999998 8887 588888654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.05  E-value=0.024  Score=40.51  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|..
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~  197 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPI  197 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5788999999999999999999998887 48888864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.05  E-value=0.027  Score=41.59  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|+|+|.+|..+++.+...|. +++++|....
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~  224 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPA  224 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTT
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            567899999999999999999999999 6999987654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.03  E-value=0.029  Score=39.75  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++|+|||+|..|..+|..|+..|. +++|+|..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~   32 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGH-EIIVLEKS   32 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            379999999999999999999997 59999874

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.03  E-value=0.033  Score=40.07  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|.|.+|..+++.|...|. ++..+|...
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~  181 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAY  181 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCCh
Confidence            5788999999999999999999999998 488888754

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.02  E-value=0.025  Score=40.64  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..++|.|+|.|.+|..+++.|...|. ++..+|..
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~  200 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPY  200 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5788999999999999999999999998 48888864

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=95.01  E-value=0.03  Score=40.90  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+..++|.|+|.|.+|..+++.|...|.. +..+|.
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~  147 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGWK-VLVCDP  147 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTCE-EEEECH
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcC
Confidence            57899999999999999999999999984 788875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.01  E-value=0.033  Score=40.71  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---hCCCc--EEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIIL---SGVKS--VCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l---~Gv~~--i~l~D~d   53 (84)
                      .+|+|||+|..|..+|+.|..   .|...  ++++|..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~   40 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQ   40 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcC
Confidence            589999999999999999999   99853  9999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.01  E-value=0.022  Score=40.35  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..++|+|||.|..|...|..|...|  +++++|.+..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~   41 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPV   41 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSS
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCC
Confidence            4689999999999999999999999  8999998654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.01  E-value=0.027  Score=37.14  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~   48 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTE   48 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCH
Confidence            57788999998 689999999999999985 88887653

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.01  E-value=0.04  Score=37.11  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .++.++|+|.|+ |.+|+++++.|...|. +++.+|...-
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            456789999996 9999999999999997 5877766443

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.00  E-value=0.034  Score=40.87  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|||+|..|.++|..|.+.|. +++++|...
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            35689999999999999999999998 499998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.99  E-value=0.028  Score=41.57  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++.+|...|. +++++|.+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCCH
Confidence            4689999999999999999999998 589998753

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=94.99  E-value=0.029  Score=37.70  Aligned_cols=37  Identities=22%  Similarity=0.451  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~   42 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNE   42 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            57788999998 78999999999999998 588887653

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=94.99  E-value=0.028  Score=40.50  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|..++|.|+|.|.+|..+++.|...|. ++..+|..
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~  192 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRE  192 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSH
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCC
Confidence            46889999999999999999999999998 48888865

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.99  E-value=0.036  Score=37.11  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   41 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSK   41 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            35677889998 68999999999999998 588887654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=94.99  E-value=0.029  Score=40.38  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..|+|||+|..|..+|..|+..|. +++|+|...
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~-~V~vlEk~~   37 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5689999999999999999999998 599998754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.98  E-value=0.015  Score=40.98  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|+.++.+|..+|. +++++|.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            89999999999999999999986 589998753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.98  E-value=0.031  Score=37.35  Aligned_cols=34  Identities=9%  Similarity=0.084  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++|+|.|+|.+|+.+++.|...|. +++.++.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh
Confidence            4789999999999999999999997 477776543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.97  E-value=0.038  Score=40.37  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +.+++..|+|||+|..|...|..|...|.+ ++|+|.
T Consensus        21 ~~m~~~dVvVIGgG~aGl~aA~~la~~G~~-V~liEk   56 (491)
T 3urh_A           21 QSMMAYDLIVIGSGPGGYVCAIKAAQLGMK-VAVVEK   56 (491)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             hhcccCCEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence            345568999999999999999999999985 999995

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.97  E-value=0.034  Score=38.08  Aligned_cols=38  Identities=16%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            357888999998 789999999999999985 77877653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.95  E-value=0.031  Score=42.15  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.+..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~  308 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPI  308 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            567899999999999999999999998 6999987653

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.95  E-value=0.021  Score=38.77  Aligned_cols=41  Identities=15%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             HHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          13 PYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        13 ~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+..+++++|+|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~   48 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAK-VVSVSLDE   48 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCC
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            445678889999998 689999999999999985 77777543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=94.94  E-value=0.034  Score=39.31  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC-Ccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS-GVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~-d~v   55 (84)
                      ..|+|||+|..|...|..|...|. +++|++. +.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~-~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGK-KVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCc
Confidence            379999999999999999999998 5999986 443

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.94  E-value=0.037  Score=36.56  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~   47 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDE   47 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678899998 79999999999999997 588887653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.93  E-value=0.038  Score=37.61  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++|+|.|+ |.+|+++++.|...|. +++++|..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   36 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRR   36 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            4578999995 9999999999999996 58887654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=94.93  E-value=0.034  Score=37.08  Aligned_cols=37  Identities=30%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~   40 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            57788999998 689999999999999985 88887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.93  E-value=0.035  Score=39.76  Aligned_cols=34  Identities=12%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|.|||+|.+|+.++++|...|. +++++|.+.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            3589999999999999999999996 599998764

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.93  E-value=0.022  Score=38.68  Aligned_cols=40  Identities=18%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             HHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          13 PYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        13 ~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+..++.++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        21 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~   61 (266)
T 3uxy_A           21 QSMQGFEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRA   61 (266)
T ss_dssp             -----CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSC
T ss_pred             hhhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            334567888899998 68999999999999998 48887754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.92  E-value=0.028  Score=42.85  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~  304 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGW-QVTLYCAD  304 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            689999999999999999999998 59999974

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.91  E-value=0.012  Score=40.65  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~   65 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQ   65 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            46778999998 689999999999999974 88887653

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=94.90  E-value=0.024  Score=43.88  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=35.4

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHH----hCC------CcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIIL----SGV------KSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l----~Gv------~~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|..|..+++.|+.    .|+      ++|.++|..-+
T Consensus       316 k~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gl  365 (605)
T 1o0s_A          316 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL  365 (605)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCc
Confidence            57899999999999999999999998    786      68999998544

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.90  E-value=0.036  Score=41.37  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.+|.|||+|..|+.++.+|+.+|. .++++|.+.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4589999999999999999999998 599998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.88  E-value=0.023  Score=38.41  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|..+|..|...|.. ++++|.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~   37 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc-EEEEccC
Confidence            46899999999999999999999985 8899864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.88  E-value=0.033  Score=38.02  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh-----CCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS-----GVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~-----Gv~~i~l~D~   52 (84)
                      .+|.|+|+|.+|+.++..|..+     |..+++++|.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999998     7236889876

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.87  E-value=0.038  Score=37.45  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..|++++++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   61 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSL   61 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            357788999998 67999999999999998 588887653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.87  E-value=0.033  Score=41.10  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|..++.+|+..|. +++++|.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999997 599998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.86  E-value=0.037  Score=40.96  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|..+|..|...|. +++|+|.+.
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~   76 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   76 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4689999999999999999999998 599999876

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.86  E-value=0.018  Score=39.18  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++++.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   62 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTE   62 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            357778888887 78999999999999998 488887654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.85  E-value=0.04  Score=36.64  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .+++|.++++.|+..|.. +.++|.+.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~   43 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDK   43 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            46778899998 689999999999999975 88888654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.85  E-value=0.034  Score=41.37  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+.+|.|+|+|.+|..++.+|+..|. +++++|.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46799999999999999999999998 599998754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.84  E-value=0.043  Score=36.64  Aligned_cols=36  Identities=33%  Similarity=0.580  Sum_probs=30.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   46 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDV   46 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678899998 78999999999999998 588887653

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.84  E-value=0.047  Score=35.96  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..++++|+|+|+-|.+++..|...+..-+.++|++.-
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~   47 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPT   47 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            4468999999999999999999888877888887653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.84  E-value=0.036  Score=37.41  Aligned_cols=38  Identities=16%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+++++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~   64 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAA   64 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            357788899998 789999999999999984 88887653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.83  E-value=0.036  Score=37.33  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++|+|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~   46 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDV   46 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45678888888 68999999999999998 588887654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=94.82  E-value=0.04  Score=37.21  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   61 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTE   61 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            46778899998 689999999999999985 88887654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.82  E-value=0.064  Score=36.11  Aligned_cols=40  Identities=15%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +-+++.++++|.| .||+|.++++.|+..|. ++.++|.+.-
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            3467788899998 78999999999999998 4888876543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.82  E-value=0.023  Score=38.71  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.++.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~   66 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHS   66 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            357788999998 789999999999999985 88887653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.82  E-value=0.046  Score=36.82  Aligned_cols=37  Identities=30%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~   65 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCART   65 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence            357788899998 799999999999999974 8887764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.81  E-value=0.016  Score=39.90  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             HHHhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          15 QSRLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+.+++++|+|.|+ |++|.++++.|...|. +++++|..
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35677889999995 9999999999999996 58888764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.81  E-value=0.043  Score=35.91  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=30.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~   41 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTN   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678899998 69999999999999997 488887653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.80  E-value=0.042  Score=36.14  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~   44 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGAR-LILIDRE   44 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677899998 799999999999999974 8888765

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.80  E-value=0.043  Score=38.59  Aligned_cols=34  Identities=32%  Similarity=0.449  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||.|+|+|.+|..++..|+..+. +++.++|-+.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   35 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDR   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999998874 6799999764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.78  E-value=0.036  Score=40.37  Aligned_cols=32  Identities=28%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|..++..|+..|. +++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999997 589998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=94.78  E-value=0.037  Score=40.30  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|.+.+
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~   38 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESKAL   38 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-cEEEEcCCCC
Confidence            4689999999999999999999998 5999998753

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=94.77  E-value=0.044  Score=36.27  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~   41 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDR   41 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            5677899998 78999999999999997 588887653

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=94.77  E-value=0.038  Score=40.44  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+..++|.|+|.|.+|..+++.|...|.. +..+|.
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~-V~~~d~  150 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGIR-TLLCDP  150 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTCE-EEEECH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEECC
Confidence            57899999999999999999999999984 888875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.76  E-value=0.031  Score=37.47  Aligned_cols=37  Identities=16%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   40 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTK   40 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            46778888988 689999999999999985 88887653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.76  E-value=0.043  Score=37.05  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   45 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPE   45 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            57788899998 699999999999999984 88888654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.74  E-value=0.044  Score=36.88  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++.++++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecc
Confidence            467888999998 789999999999999986 8888754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.74  E-value=0.043  Score=37.27  Aligned_cols=37  Identities=14%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++..-|+|||+|+.|-..|..|++.|.+ ++++|.+..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~-v~lie~~~~   40 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQ-IALFDNNTN   40 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSCC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            4556799999999999999999999985 999997643

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.74  E-value=0.051  Score=37.56  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=28.4

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..++|+|.|+ |.+|..+++.|...|. ++++++.+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            44679999996 9999999999999995 588777654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.73  E-value=0.033  Score=37.91  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..+.++.++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~   62 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRL   62 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            4456777888888 689999999999999985 88887653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.73  E-value=0.046  Score=35.84  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 58999999999999998 48887765

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.73  E-value=0.043  Score=37.25  Aligned_cols=36  Identities=22%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~   51 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK   51 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            57788999998 78999999999999997 48888765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=94.72  E-value=0.045  Score=39.62  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ....|+|||+|..|..+|..|+..|. +++|+|...
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~   59 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   59 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            34689999999999999999999997 599998754

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=94.72  E-value=0.033  Score=37.85  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             HHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          12 LPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+..++.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~   57 (288)
T 2x9g_A           15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNS   57 (288)
T ss_dssp             -------CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSC
T ss_pred             CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCc
Confidence            3344567888899988 789999999999999974 88887654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.71  E-value=0.025  Score=37.51  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=27.3

Q ss_pred             HHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          12 LPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      .+.....++++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus         5 ~~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~   44 (256)
T 3ezl_A            5 HHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGC   44 (256)
T ss_dssp             --------CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEE
T ss_pred             CCCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence            3445677888999998 789999999999999985 66666

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=94.71  E-value=0.034  Score=39.99  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|.|.+|.++++.|...|. ++..+|...
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  206 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTR  206 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCC
Confidence            5788999999999999999999999998 488888764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.71  E-value=0.072  Score=38.07  Aligned_cols=33  Identities=30%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|+|+|.|.+|.|+|..|...|. ++++++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~  178 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIIL  178 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcC
Confidence            6899999999999999999999997 59998654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.71  E-value=0.039  Score=36.38  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~   39 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQ   39 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5677888988 789999999999999985 77777654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.71  E-value=0.05  Score=34.98  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+|.|+ |.+|.++++.|...|. ++++++.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc
Confidence            6999995 9999999999999996 577777653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.71  E-value=0.037  Score=41.35  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|||+|-.|+.+|.+|+.+|. .++++|.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            689999999999999999999998 599998754

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.70  E-value=0.045  Score=37.22  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~   50 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDT   50 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46788999998 78999999999999997 588887654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=94.69  E-value=0.039  Score=38.84  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|+|||+|..|..+|..|+..|. +++|++...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGH-EVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCC
Confidence            379999999999999999999996 599998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.68  E-value=0.055  Score=36.66  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .-|+|||+|+.|-..|..|.+.|. +++|+|.+..
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~-~V~liE~~~~   40 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANL-KTVMIERGIP   40 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Confidence            468999999999999999999998 4999987654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=94.68  E-value=0.036  Score=37.23  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +.+++.++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3457778888887 78999999999999997 5888876

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.68  E-value=0.047  Score=36.99  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.+.++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~   44 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDIC   44 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEecc
Confidence            57788999998 689999999999999985 8888765

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=94.67  E-value=0.03  Score=43.06  Aligned_cols=40  Identities=25%  Similarity=0.452  Sum_probs=35.1

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHH----hCC------CcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIIL----SGV------KSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l----~Gv------~~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|..|..+++.|..    .|+      ++|.++|..-+
T Consensus       280 k~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gl  329 (564)
T 1pj3_A          280 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL  329 (564)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCe
Confidence            47899999999999999999999986    795      78999998543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.67  E-value=0.033  Score=36.27  Aligned_cols=36  Identities=11%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +.++|+|.| .|++|.++++.|+..|. .++.++|.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~   39 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            456788888 79999999999999994 4688887653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.67  E-value=0.042  Score=40.72  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++.+|+..|. +++++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            579999999999999999999998 589998653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.67  E-value=0.046  Score=37.23  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   61 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNE   61 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46678889998 78999999999999998 488887653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.66  E-value=0.034  Score=36.52  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~   40 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            46678899998 789999999999999975 88887643

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.66  E-value=0.048  Score=36.27  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .||+|.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~   40 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAA-VAIAARR   40 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            5678899998 789999999999999984 8888765

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.65  E-value=0.046  Score=36.61  Aligned_cols=37  Identities=30%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~   41 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNG   41 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            35677899998 789999999999999984 88888754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.65  E-value=0.056  Score=39.03  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|...|..|...|. +++++|.+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~   38 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   38 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999998 59999986

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.65  E-value=0.047  Score=36.77  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+.+++|+|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~   65 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINK   65 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCH
Confidence            46778999998 789999999999999974 88887653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.65  E-value=0.037  Score=37.21  Aligned_cols=37  Identities=22%  Similarity=0.453  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~   44 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST   44 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46778889988 78999999999999998 588887653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.65  E-value=0.031  Score=37.49  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=27.1

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      +..+++++|+|.| .||+|.++++.|+..|.. +.+++
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~~   57 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFN-IGVHY   57 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence            4567888899998 789999999999999986 54443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.64  E-value=0.054  Score=34.96  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      ++|+|.| .|.+|.++++.|...|. ++++++...-..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccc
Confidence            6899999 69999999999999995 688887764433

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.64  E-value=0.047  Score=36.98  Aligned_cols=37  Identities=11%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~   60 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKM   60 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            46778899998 789999999999999974 88887653

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=94.64  E-value=0.047  Score=37.12  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=30.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   39 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSA   39 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCH
Confidence            5677889998 78999999999999998 588887653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.64  E-value=0.037  Score=36.98  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRP   40 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            35678899998 78999999999999997 588887653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.63  E-value=0.054  Score=36.18  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   41 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQV   41 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4567899998 78999999999999998 588887653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=94.63  E-value=0.039  Score=42.30  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|||+|..|.+.|..|...|.. ++|+|...
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~-V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD-VVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            457899999999999999999999985 99998753

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.63  E-value=0.048  Score=36.52  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            36678899998 789999999999999975 8888765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.63  E-value=0.045  Score=39.95  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ...|+|||+|..|...|..|+..|. +++|+|.+.+
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~   60 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGK-RVAIAEEYRI   60 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcC-EEEEEeCCCC
Confidence            3589999999999999999999998 5999998643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.037  Score=40.40  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++.+|+|||+|..|..+|..|...|.. ++|+|.+.+
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~-V~liE~~~~   45 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAK-TLLVEAKAL   45 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCC-EEEEESSCT
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCc-EEEEeCCCc
Confidence            356899999999999999999999984 999998753

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.63  E-value=0.048  Score=36.91  Aligned_cols=38  Identities=18%  Similarity=0.419  Sum_probs=31.9

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   45 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNP   45 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            357788999998 789999999999999985 88887653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=94.62  E-value=0.043  Score=40.95  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|.|.+|..+++.|...|. ++.++|.+.
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p  244 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDP  244 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCh
Confidence            4568899999999999999999999998 588898765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.61  E-value=0.035  Score=40.98  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH------------hCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL------------SGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l------------~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|+.            .|+ +++|+|....
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~-~V~liE~~~~   53 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL-NITLIESPDV   53 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC-EEEEEECSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC-eEEEEeCCCC
Confidence            4689999999999999999999            898 5999997643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.61  E-value=0.03  Score=39.73  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d   53 (84)
                      ..+|+|||+|-.|...|..|...|.     .+++|++..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~   43 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS   43 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence            3589999999999999999999993     369999875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.60  E-value=0.054  Score=35.88  Aligned_cols=35  Identities=17%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~   37 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRY   37 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            346788888 789999999999999985 88887653

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.60  E-value=0.035  Score=39.96  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|.|.+|..+++.|...|.. +..+|...
T Consensus       161 ~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr~~  197 (351)
T 3jtm_A          161 DLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQ  197 (351)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECSSC
T ss_pred             cccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCCCc
Confidence            47889999999999999999999999986 88888653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.59  E-value=0.048  Score=37.90  Aligned_cols=37  Identities=27%  Similarity=0.499  Sum_probs=32.0

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +||+++.++|-| .+|+|.++++.|+..|.. +.+.|.+
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            368888888888 789999999999999995 8888865

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.59  E-value=0.043  Score=36.05  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=30.0

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~   40 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRK   40 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCC
Confidence            5677899998 799999999999999984 8888765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.59  E-value=0.078  Score=35.61  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|+|||+|+.|-..|..|.+.|.+ ++++|.+...
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~-v~liE~~~~g   39 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLK-PVMYEGFMAG   39 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-CEEECCSSGG
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCC
Confidence            589999999999999999999985 8999876543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=94.59  E-value=0.057  Score=36.55  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   50 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRV   50 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            46778899998 689999999999999985 88887653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.59  E-value=0.04  Score=39.93  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|...|..|...|. +++++|.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~   34 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM-KTACVEKR   34 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3579999999999999999999998 59999987

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.58  E-value=0.025  Score=37.65  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             HHHHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          14 YQSRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        14 ~q~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -...+++++|+|.|+   +|+|.++++.|+..|. ++.++|..
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~   49 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVG   49 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecc
Confidence            345678899999995   6999999999999998 58888765

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.57  E-value=0.051  Score=36.51  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++.++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~   42 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDG   42 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5678899998 789999999999999985 88887653

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.57  E-value=0.059  Score=36.31  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIH   41 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            46778899998 78999999999999998 47777754

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=94.56  E-value=0.051  Score=35.60  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCC------cEEEEeCCc
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVK------SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~------~i~l~D~d~   54 (84)
                      +++|+|.| .|++|.++++.|+..|..      ++.+++.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~   43 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   43 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH
Confidence            45788888 799999999999999985      688887653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=94.56  E-value=0.024  Score=40.38  Aligned_cols=37  Identities=14%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|.|.+|..+++.|...|.. +..+|...
T Consensus       142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~~  178 (330)
T 4e5n_A          142 GLDNATVGFLGMGAIGLAMADRLQGWGAT-LQYHEAKA  178 (330)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHTTTSCCE-EEEECSSC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            47889999999999999999999988884 88888764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.56  E-value=0.037  Score=40.12  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|..+|..|...|. +++++|.+.+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~   38 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKEL   38 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEcCCCC
Confidence            4689999999999999999999997 5999998753

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.55  E-value=0.055  Score=35.99  Aligned_cols=36  Identities=22%  Similarity=0.472  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~   41 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVP   41 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCc
Confidence            6678899998 789999999999999974 88887654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.55  E-value=0.044  Score=36.71  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~   46 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKS   46 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            46778899998 789999999999999986 88887654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.55  E-value=0.043  Score=39.49  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---hCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIIL---SGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l---~Gv~~i~l~D~d~   54 (84)
                      ++|+|||+|..|.++|..|..   .|. +++|+|...
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~   40 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISAND   40 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCC
Confidence            689999999999999999998   776 599998764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=94.54  E-value=0.072  Score=36.01  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +++++++|.| .+|+|.++++.|+..|. ++.++|.+.-
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   41 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAV   41 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccch
Confidence            5678899998 78999999999999998 5888876643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=93.56  E-value=0.0063  Score=40.27  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++..+|.|+|+|.+|+.++++|...|. +++++|.+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~-~V~~~~r~   51 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGY-SVVFGSRN   51 (201)
Confidence            566789999999999999999999996 47787754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.54  E-value=0.049  Score=39.34  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+|+|||+|..|...|..|...|. +++|++..
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~   43 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEAR   43 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEecc
Confidence            5789999999999999999999998 69999764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.53  E-value=0.04  Score=38.02  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   75 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP   75 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46777888888 78999999999999998 588888654

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.53  E-value=0.023  Score=38.56  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~   61 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   61 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47788999998 58999999999999997 48888764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.53  E-value=0.045  Score=40.64  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|.+|+.++.+|+..|. +++++|.+.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            479999999999999999999998 599998753

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.52  E-value=0.042  Score=41.34  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=34.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+..++|.|+|.|.+|..+++.|...|. +++++|.+...
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~  292 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC  292 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhh
Confidence            4688999999999999999999999998 59999987643

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=94.52  E-value=0.063  Score=33.57  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             HHHhhcCcEEEEcC----ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIGV----EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG~----gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..-++..+|.|+|+    |..|..++++|...|.. +..+|+..
T Consensus         9 ~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~~   51 (138)
T 1y81_A            9 SNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNY   51 (138)
T ss_dssp             -----CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC
T ss_pred             ccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCCC
Confidence            34567889999999    99999999999999994 77777753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.51  E-value=0.046  Score=39.08  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             HHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        14 ~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+.-++.||+|||+|..|...|+.|...+ .+++++|.+.-
T Consensus         3 ~~~~~~~~~~vIvGgG~AGl~aA~~L~~~~-~~itlie~~~~   43 (385)
T 3klj_A            3 HHHHHKSTKILILGAGPAGFSAAKAALGKC-DDITMINSEKY   43 (385)
T ss_dssp             -----CBCSEEEECCSHHHHHHHHHHTTTC-SCEEEECSSSS
T ss_pred             CccccCCCCEEEEcCcHHHHHHHHHHhCCC-CEEEEEECCCC
Confidence            466778899999999999999999994444 46999987653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.51  E-value=0.046  Score=38.44  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||+|+|+ |.+|..++..|+..|. .++.++|-+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            37999998 9999999999998774 6799999876

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.51  E-value=0.039  Score=36.64  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=30.4

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCC--CcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGV--KSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv--~~i~l~D~d~   54 (84)
                      ...++.++|+|.| .|++|.++++.|+..|.  .++.++|.+.
T Consensus        16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            4567778899998 79999999999999994  4688887653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.50  E-value=0.029  Score=37.73  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH   39 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35677888888 78999999999999997 48888765

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=94.49  E-value=0.038  Score=36.54  Aligned_cols=35  Identities=17%  Similarity=0.453  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~   47 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   47 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCc
Confidence            5667899998 78999999999999997 58888764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.49  E-value=0.051  Score=39.40  Aligned_cols=37  Identities=22%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|.|.|.+|..+++.|...|. ++.+.|.+.
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~  208 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDT  208 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4678999999999999999999999998 477888763

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.49  E-value=0.058  Score=38.93  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|...|..|...|. +++++|.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~   36 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            3689999999999999999999998 599999873

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=94.49  E-value=0.056  Score=36.09  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~   43 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ   43 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5677899998 78999999999999997 488887653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=94.48  E-value=0.038  Score=41.91  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|..+|..|+..|.+ ++|+|..
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~k-V~VlEr~  139 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFN-PIIVERG  139 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCC-CEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe-EEEEEcc
Confidence            36899999999999999999999985 9999875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.48  E-value=0.059  Score=35.66  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~   46 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPN   46 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            5678899998 789999999999999974 88887654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.48  E-value=0.055  Score=36.27  Aligned_cols=37  Identities=24%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   47 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS   47 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46778899998 78999999999999997 488887653

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.48  E-value=0.056  Score=35.91  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~   38 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIE   38 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677899998 789999999999999974 7787764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.47  E-value=0.058  Score=36.21  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|+.++++|.| .+++|.++++.|+..|.. +.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   44 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAART   44 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCC
Confidence            47788899998 689999999999999985 8888765

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=94.47  E-value=0.1  Score=32.77  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             HHhh-cCcEEEEcC----ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLR-ATKILLIGV----EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~-~~~vlivG~----gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .-|. ..+|.|+|+    |..|..++++|...|.. +..+|+..
T Consensus         8 ~ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~   50 (145)
T 2duw_A            8 GILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKV   50 (145)
T ss_dssp             HHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             HHHhCCCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcc
Confidence            4455 789999999    78999999999999985 88888765

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.056  Score=36.91  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.+..+.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   62 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTR   62 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            356677889998 78999999999999998 588887654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.47  E-value=0.047  Score=37.44  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++++++|.| .+|+|.++++.|+..|.. +.+.|.+
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~   82 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLP   82 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            57788999998 789999999999999985 7777654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.47  E-value=0.055  Score=40.52  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.1

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -.+.+|.|+|+|..|+.++.+|+..|. +++++|.+.
T Consensus         8 ~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~   43 (497)
T 2p4q_A            8 HMSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQ   43 (497)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cCCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            356799999999999999999999998 589998654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.46  E-value=0.056  Score=36.30  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   41 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILD   41 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5678899998 78999999999999998 488877653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=94.46  E-value=0.045  Score=39.06  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.+|+|||+|..|..+|..|...|. +++++|..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~   35 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   35 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            4689999999999999999999996 69999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.45  E-value=0.056  Score=39.15  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ||+|||+|..|-.+|..|.+.|-+ +|+|+|.+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            799999999999999999999974 699998753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.45  E-value=0.044  Score=36.88  Aligned_cols=31  Identities=23%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+|+|||+|..|..+|..|...|.. +++++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~-v~li~~   32 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            4799999999999999999999985 888864

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=94.45  E-value=0.048  Score=38.16  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++|.+||+|..|..+++||..+|.. ++++|.+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~-v~v~dr~~   36 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQ   36 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCe-EEEEcCCH
Confidence            4899999999999999999999984 88988654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.45  E-value=0.044  Score=36.32  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            5677889998 68999999999999997 588887653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.44  E-value=0.036  Score=36.44  Aligned_cols=37  Identities=32%  Similarity=0.482  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~   45 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA   45 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            36678899998 69999999999999997 488887653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=94.44  E-value=0.06  Score=39.56  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..+|+|||+|..|..+|..|...|..+++++|..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~   42 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECN   42 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            45789999999999999999999996679999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.44  E-value=0.053  Score=36.57  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+++.++|-|++   |+|-++++.|+..|.. +.+.|.+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~   42 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKE   42 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCH
Confidence            4778899999964   8999999999999985 88888653

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=94.43  E-value=0.058  Score=35.93  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   41 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKP   41 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            35678899998 689999999999999985 88887654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.43  E-value=0.085  Score=36.39  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=31.8

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++.++|+|.| .|.+|+.+++.|...|. +++.+|...
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   43 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   43 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            356778999999 69999999999999996 588887643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=94.42  E-value=0.044  Score=37.25  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=29.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~   38 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQ   38 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            3467788888 689999999999999985 88887653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.42  E-value=0.054  Score=39.30  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|...|..|...|. +++++|.+.+
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~   39 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQAL   39 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEccCCC
Confidence            4689999999999999999999997 6999998653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.41  E-value=0.057  Score=36.66  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|+|.|+ |.+|+++++.|...|. ++++++.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   44 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45678999995 9999999999999996 57777654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.41  E-value=0.052  Score=36.70  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..++.++++|.| .+|+|.++++.|+..|.. +.++|.
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEec
Confidence            467888999998 789999999999999985 888875

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=94.40  E-value=0.039  Score=36.79  Aligned_cols=36  Identities=36%  Similarity=0.567  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~   39 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            46778899998 789999999999999984 8887764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=94.40  E-value=0.059  Score=36.44  Aligned_cols=37  Identities=27%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~   43 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDE   43 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            36678899998 789999999999999974 88887653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=94.40  E-value=0.046  Score=36.54  Aligned_cols=36  Identities=31%  Similarity=0.555  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~   39 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLD   39 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5677899998 689999999999999984 88887653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.39  E-value=0.06  Score=35.96  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   41 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNR   41 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5567899998 78999999999999997 488887653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.39  E-value=0.059  Score=36.62  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .++.++++|.| .+|+|.++++.|+..|.. +.++|.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   63 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWGR   63 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcC
Confidence            46678899998 789999999999999984 888874

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.38  E-value=0.059  Score=39.57  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|||+|..|...|..|...|. +++|+|.+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~   36 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA-KVALVEKSRL   36 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSST
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCc
Confidence            3589999999999999999999998 5999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.37  E-value=0.064  Score=40.18  Aligned_cols=39  Identities=21%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~v   55 (84)
                      +-.-.+|.|+|+|.+|..++.+|+.. |..+++++|.+.-
T Consensus        15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           15 RGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             HCSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            33456899999999999999999999 8745999987654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.37  E-value=0.078  Score=37.47  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~  175 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG  175 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4899999999999999999999998 59998754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=94.37  E-value=0.039  Score=42.37  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-----hCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL-----SGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l-----~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|..+|..|++     .|+. ++|+|...
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~-v~viE~~~   46 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   46 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCC-EEEEeCCC
Confidence            3579999999999999999999     9995 99998653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.36  E-value=0.039  Score=39.93  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|||+|..|...|..|...|. +++++|.+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~   36 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL-STAIVEPKY   36 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            3579999999999999999999998 599999873

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=94.34  E-value=0.059  Score=35.93  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=27.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .++++.++|.| .+|+|.++++.|+..|.. +.++|.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   41 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDI   41 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46788899998 689999999999999985 777776

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=94.33  E-value=0.049  Score=36.32  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~   43 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSE   43 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5677888888 789999999999999985 77777653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.33  E-value=0.048  Score=41.00  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus       139 ~l~g~~vgIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~  175 (529)
T 1ygy_A          139 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYV  175 (529)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence            4778899999999999999999999998 588888754

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.33  E-value=0.038  Score=37.18  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=30.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++++|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   44 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRRE   44 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5677888888 689999999999999985 88887653

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=94.32  E-value=0.054  Score=39.64  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..+++.|+|.|.+|..+++.|...|.. +..+|..
T Consensus       142 el~gktlGiIGlG~IG~~vA~~l~~~G~~-V~~~d~~  177 (404)
T 1sc6_A          142 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE  177 (404)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            58899999999999999999999999974 8888874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.31  E-value=0.058  Score=37.01  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++.++++|.|++   |+|.++++.|+..|.. +.++|.+
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~   65 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLS   65 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4678899999975   9999999999999985 8888765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.31  E-value=0.063  Score=36.23  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            36678899998 78999999999999997 588887653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=94.31  E-value=0.064  Score=35.66  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~   40 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGAK-VTGFDQA   40 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCc
Confidence            5667899998 689999999999999974 7777754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.30  E-value=0.038  Score=37.25  Aligned_cols=37  Identities=32%  Similarity=0.646  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   54 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDV   54 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            57778899998 789999999999999985 88887653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.30  E-value=0.071  Score=37.64  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +..+|+|||+|..|...|..|...|..++++++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~   38 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILER   38 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEEC
Confidence            4578999999999999999999999446999986

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=94.30  E-value=0.048  Score=35.67  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~   40 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTS   40 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5667888988 78999999999999997 48887765

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=94.29  E-value=0.048  Score=36.09  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+++++|+|.| .|++|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcC
Confidence            46778899998 799999999999999974 888776

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.29  E-value=0.052  Score=36.95  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..++.++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            456778899998 78999999999999998 5888876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=94.29  E-value=0.058  Score=36.43  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +++.++++|.| .+|+|.++++.|+..|.. +.++|.
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r   43 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDI   43 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEec
Confidence            57788899998 789999999999999985 888875

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.28  E-value=0.042  Score=36.12  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~   37 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSA   37 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            356788898 78999999999999997 588887653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.085  Score=36.33  Aligned_cols=36  Identities=22%  Similarity=0.543  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHH--hCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIIL--SGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l--~Gv~~i~l~D~d   53 (84)
                      .....-|+|||+|+.|...|..|++  .|.+ ++|+|..
T Consensus        62 ~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~-V~viEk~   99 (326)
T 3fpz_A           62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESS   99 (326)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSS
T ss_pred             hccCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEECC
Confidence            3455689999999999999999985  4775 8999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.28  E-value=0.072  Score=37.46  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ..+|.|+|+|.+|+.++..|+..|. .++.|+|-+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3689999999999999999999996 4699998764

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=94.28  E-value=0.038  Score=42.03  Aligned_cols=34  Identities=15%  Similarity=0.506  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d~   54 (84)
                      ...|+|||+|..|..+|..|++ .|+. ++|+|...
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~-V~viEr~~   66 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIR-TCIVEQKE   66 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSC-EEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            4579999999999999999999 9995 99998653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.27  E-value=0.041  Score=39.85  Aligned_cols=31  Identities=26%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|.|+|+|.+|..++.+|+. | .+++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G-~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q-NEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-C-CEEEEEECCH
Confidence            79999999999999999998 8 4699998754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.26  E-value=0.039  Score=37.39  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             HHHHHHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          12 LPYQSRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+..++.++++|.|+   +|+|.++++.|+..|.. +.++|.+.
T Consensus        18 ~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~   62 (280)
T 3nrc_A           18 GSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAE-LAFTYVGQ   62 (280)
T ss_dssp             ----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             CCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCE-EEEeeCch
Confidence            44456788899999994   46999999999999984 88888765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.26  E-value=0.066  Score=36.12  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~   55 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNE   55 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            5678899998 789999999999999974 88887653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.25  E-value=0.058  Score=40.60  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|.|.+|..+++.|...|. ++.+.|.+.
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp  280 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDP  280 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3678999999999999999999999998 588887654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.25  E-value=0.072  Score=35.82  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=28.2

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCC
Confidence            368999995 9999999999999995 577776653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.25  E-value=0.046  Score=37.28  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++.++++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~   63 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDG   63 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            357788899998 78999999999999998 588887653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.24  E-value=0.054  Score=39.71  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=31.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHH--------------------HhCCCcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNII--------------------LSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~--------------------l~Gv~~i~l~D~d   53 (84)
                      +...+|+|+|.|.+|.++|..|.                    ..|+.+++++...
T Consensus       143 ~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~  198 (460)
T 1cjc_A          143 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRR  198 (460)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcC
Confidence            35689999999999999999999                    6799889999654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.24  E-value=0.067  Score=35.77  Aligned_cols=35  Identities=29%  Similarity=0.589  Sum_probs=29.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN   40 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECC
Confidence            4567889998 78999999999999997 48888765

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.23  E-value=0.064  Score=35.87  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=30.1

Q ss_pred             hhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++.++++|.|+   |++|.++++.|+..|.. +.++|.+.
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~   44 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAE   44 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCG
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            45678999996   69999999999999975 88887653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.23  E-value=0.036  Score=38.04  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|...|..|...|.. ++++|..
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~   46 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLA-PLVFEGT   46 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCC-CEEECCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe-EEEEecC
Confidence            46899999999999999999999985 8899864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.22  E-value=0.06  Score=38.86  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|...|..|...  |. +++++|...
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~   37 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQA-EISLIDKQA   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCC
Confidence            5899999999999999999998  65 699998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.22  E-value=0.051  Score=40.51  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~v   55 (84)
                      .....+|+|||+|..|..+|..|...  |. +++++|....
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~   72 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEY   72 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSC
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCC
Confidence            44567999999999999999999999  54 6999987653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=94.21  E-value=0.067  Score=36.66  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++.+.++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~   61 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVC   61 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            57788899998 789999999999999985 7777754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.20  E-value=0.081  Score=36.69  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             HHHHHHhhcCcEEEEc-CChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          12 LPYQSRLRATKILLIG-VEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      ..+...++.++|+|.| .|.+|+.+++.|... |. +++.+|...
T Consensus        16 ~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~   59 (372)
T 3slg_A           16 TQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQT   59 (372)
T ss_dssp             -------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCC
T ss_pred             hcCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCCh
Confidence            3445678889999999 699999999999998 76 588887643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.20  E-value=0.082  Score=34.33  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~   35 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLR   35 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccC
Confidence            46789998 789999999999999974 7777654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.20  E-value=0.06  Score=40.16  Aligned_cols=37  Identities=14%  Similarity=0.206  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+..++|+|+|+|.+|..+++.|...|.. +.++|.+.
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~-Viv~D~dp  253 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSI-VYVTEIDP  253 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            35778999999999999999999999995 88888654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.20  E-value=0.077  Score=36.46  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+..++|+|.| .|.+|.++++.|...|. +++++|..
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   54 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF   54 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356678999998 79999999999999995 58887764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=94.19  E-value=0.041  Score=37.60  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~   42 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNG   42 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            46778889988 689999999999999985 88887653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.18  E-value=0.075  Score=35.97  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   56 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE   56 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46778899998 78999999999999997 488887653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.18  E-value=0.075  Score=34.73  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++++|.| .||+|.++++.|+..|.. +.+++.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~   35 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARS   35 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            35788888 789999999999999985 8887765

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.16  E-value=0.051  Score=37.29  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             HHHhhcCcEEEEcC-C--hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          15 QSRLRATKILLIGV-E--GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG~-g--g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..++.++++|.|+ |  |+|.++++.|+..|.. +.++|.+
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~   66 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQG   66 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECS
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCC
Confidence            34688889999996 3  4999999999999985 8887765

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.15  E-value=0.1  Score=35.79  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=30.7

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++.++|+|.| .|.+|+.+++.|...|. +++.++..
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   58 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNF   58 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            455778999999 69999999999999996 57777653

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.15  E-value=0.051  Score=36.75  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS   40 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            35677888887 78999999999999998 488887653

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.14  E-value=0.042  Score=38.16  Aligned_cols=37  Identities=22%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++.+.++|.| .+|+|.++++.|+..|.. +.++|..
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~   79 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLC   79 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecc
Confidence            356778888888 789999999999999985 7777754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.14  E-value=0.06  Score=40.43  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|||+|..|..+|..|...|+ +++|+|..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~   53 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAA   53 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            45689999999999999999999999 79999874

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.12  E-value=0.056  Score=36.08  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRH   38 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5667888887 78999999999999997 48887764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.11  E-value=0.062  Score=39.91  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+|+|||+|..|..+|..|...|+ +++|+|..
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~   48 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIETA   48 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            4589999999999999999999999 69999864

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.10  E-value=0.075  Score=35.68  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++.++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRS   54 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457778899998 78999999999999997 47777654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=94.10  E-value=0.053  Score=36.04  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=29.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   47 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN   47 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677899998 79999999999999997 58888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	3e-17
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	1e-15
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	1e-10

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 3e-17
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L +  + LI     G EI KN++L G+ S  ++D   V+ ED     F      IGK
Sbjct: 20 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGK 78

Query: 75 N 75
          N
Sbjct: 79 N 79

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 1e-15
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L   K+L+IG  G+G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+
Sbjct: 32 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN-RQFLFRPKDIGR 90

Query: 75 N 75
           
Sbjct: 91 P 91

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (126), Expect = 1e-10
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
          Q  L+ +++L++G+ G+G   ++ +  +GV ++ LLD   V+  ++           +G+
Sbjct: 25 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTL-HSDATVGQ 83

Query: 75 N 75
           
Sbjct: 84 P 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	99.94
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	99.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.78
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.76
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.59
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.56
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.55
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.52
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.49
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.46
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.42
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.34
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.32
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.32
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.28
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.28
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.26
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.24
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.21
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.21
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.15
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.15
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.15
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.14
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.14
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.13
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.09
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.09
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.09
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.05
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.04
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.03
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.03
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.03
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.01
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.99
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.98
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.98
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.97
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.87
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.87
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.85
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.78
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.78
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.78
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.76
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.73
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.7
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.68
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.68
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.67
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.67
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.66
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.65
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.61
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.58
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.56
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.55
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.55
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.49
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.48
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.46
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.44
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.44
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.43
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.43
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.41
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.4
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.38
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.37
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.36
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.36
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.34
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.33
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.31
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.3
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.29
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.28
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.28
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.27
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.25
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.23
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.21
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.15
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.15
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.11
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.1
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.1
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.04
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.02
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.02
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.98
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.98
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.97
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	95.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.9
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.9
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.89
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.87
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.86
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	95.84
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.82
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.8
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.78
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.77
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.75
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.73
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.71
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.69
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.69
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.68
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.68
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.67
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.67
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.66
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.65
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.65
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.65
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.61
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.57
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.57
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.56
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.56
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.55
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.54
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.52
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.52
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.51
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.46
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.45
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.45
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.44
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	95.44
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.35
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.35
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.34
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.31
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.31
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.3
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.3
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.3
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.22
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.2
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.11
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.08
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.07
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.05
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.04
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.04
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.02
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.99
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	94.99
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.98
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.97
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.95
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.92
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.91
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.89
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.87
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.81
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.81
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.8
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.78
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	94.77
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.73
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.71
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.66
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.66
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.62
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.62
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.59
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	94.55
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	94.53
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.52
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.47
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.41
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.41
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.37
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.31
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.3
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	94.3
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	94.29
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.29
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.29
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.27
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	94.27
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.27
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	94.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.17
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.1
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.1
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.09
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.08
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.01
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.97
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.91
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.91
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.88
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.85
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.85
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.81
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.79
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.75
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.74
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.51
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	93.46
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.45
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.44
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.43
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.39
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.39
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	93.38
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.35
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.33
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.22
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	93.2
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.17
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.07
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	93.0
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	92.97
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.96
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	92.94
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.93
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.75
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.74
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	92.67
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.64
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.59
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.57
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.56
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.56
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.51
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.45
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.44
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.42
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.4
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.27
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	92.19
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.07
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	92.03
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	91.98
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.95
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.65
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.63
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	91.47
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.38
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.37
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.31
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.29
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.08
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	91.03
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	91.03
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.91
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.33
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.28
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.14
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.07
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	90.03
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.87
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.8
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.59
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	89.51
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.35
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	89.23
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.56
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.21
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	87.67
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.66
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	87.45
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.42
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.12
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	86.92
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.89
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	86.15
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	85.85
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.41
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	84.99
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	84.56
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	84.39
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.24
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	84.21
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.12
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	83.72
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	83.53
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.46
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	83.33
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	82.86
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	82.76
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.26
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.34
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	80.05

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.9e-28  Score=165.09  Aligned_cols=77  Identities=21%  Similarity=0.385  Sum_probs=73.9

Q ss_pred             ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+++.+.++|+||++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|| +||++|+++|+|++|+++++++
T Consensus        16 ~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL-~RQ~l~~~~diG~~K~~~a~~~   92 (247)
T d1jw9b_          16 ILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL-QRQTLHSDATVGQPKVESARDA   92 (247)
T ss_dssp             TSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             ccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhh-hhhccccHhhcCchHHHHHHHH
Confidence            4688899999999999999999999999999999999999999999999999999 9999999999999999998764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-24  Score=157.85  Aligned_cols=72  Identities=29%  Similarity=0.482  Sum_probs=68.8

Q ss_pred             cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593          11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus        11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+..|.+|+++||+|+|+||+|||++|||+++|+++|+|+|+|.|+.+|| +|||+|+++|+|++||++++++
T Consensus        28 ~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL-~RQflf~~~diG~~Ka~~a~~~   99 (426)
T d1yovb1          28 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEF   99 (426)
T ss_dssp             SSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHH
T ss_pred             hHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhh-cccccCChhHcCcHHHHHHHHH
Confidence            46779999999999999999999999999999999999999999999999 9999999999999999998764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-24  Score=161.14  Aligned_cols=74  Identities=28%  Similarity=0.386  Sum_probs=71.0

Q ss_pred             CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593           9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR   83 (84)
Q Consensus         9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r   83 (84)
                      .+|.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|| +||||++++|+|++||++++++
T Consensus        14 lwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL-~rqf~~~~~diGk~ka~~~~~~   87 (529)
T d1yova1          14 LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDA-GNNFFLQRSSIGKNRAEAAMEF   87 (529)
T ss_dssp             HHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHH-HHCTTCCGGGTTSBHHHHHHHH
T ss_pred             hhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhc-CchhcCChhhCCCHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999999999999 9999999999999999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.78  E-value=1.3e-05  Score=49.04  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=34.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      .++|+|+|+|.+|..+|++|+..|. +++++|.+.-...++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKL   41 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHH
Confidence            5799999999999999999999999 599999776655544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.76  E-value=1.9e-05  Score=48.97  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=33.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+||+|||+|..|.++|.+|.+.|...++|+|....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4689999999999999999999999988999986443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=4.4e-05  Score=47.97  Aligned_cols=35  Identities=14%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++|+|+|+||.+..++..|...|+++|+|++..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            57899999999999999999999999999999664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.56  E-value=5.3e-05  Score=47.38  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++.||.|+|+|.+|+.++..|.+.++.++.++|-+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            46899999999999999999999999999999854

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.56  E-value=5e-05  Score=46.31  Aligned_cols=32  Identities=19%  Similarity=0.474  Sum_probs=30.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+|||+|..|...|..|...|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=6.1e-05  Score=43.03  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++|+|+|+|..|..+++.|...|.. +++.|...
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~   38 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRM   38 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSS
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCc
Confidence            6789999999999999999999999985 88888743

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=6.6e-05  Score=47.52  Aligned_cols=37  Identities=19%  Similarity=0.471  Sum_probs=34.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+++++|+|+|+||.+..++..|...|+++|++++.+
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            4678999999999999999999999999999999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.49  E-value=7e-05  Score=49.40  Aligned_cols=36  Identities=28%  Similarity=0.606  Sum_probs=32.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+|+|||+|.+|+.+|..|+..|.++++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999889999987553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.46  E-value=8.7e-05  Score=46.84  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++||+|||+|..|..+|..|...|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999999 5999998754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.42  E-value=9.7e-05  Score=46.29  Aligned_cols=40  Identities=23%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+++++|+|+|+|.+|..++++|...|+++++++....-.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~k   60 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER   60 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHH
Confidence            4689999999999999999999999999999999765433

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.37  E-value=0.00014  Score=45.38  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.||.|+|+|.+|+.++..|.+.++.++.|+|-+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4699999999999999999999999999999953

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.34  E-value=0.00014  Score=44.80  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++|+|+|+|.+|+.++.+|+..|. +++++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~   33 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   33 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999999999999999999998 69999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.32  E-value=0.00013  Score=45.60  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+||+|||+|..|...|..|+..|. +++|+|..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            3789999999999999999999999 59999863

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=5.5e-05  Score=47.81  Aligned_cols=39  Identities=33%  Similarity=0.608  Sum_probs=34.2

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      |.++++.||.|+|+|.+|+.++..|+..|. .++.|+|.+
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            346778899999999999999999999997 469999965

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00017  Score=43.77  Aligned_cols=35  Identities=17%  Similarity=0.080  Sum_probs=30.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +||+|+|+|.+|+.++..|..+|. .+++++.+.-.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHH
Confidence            489999999999999999999998 59999776543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00018  Score=42.78  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++++|+|+|.+|..+++.|...|.. ++++|.|.-....+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~   39 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAY   39 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHH
Confidence            4789999999999999999999985 99998876554433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.28  E-value=0.00021  Score=42.69  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|+|+|.|.+|.|+|..|...|. ++++++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~   62 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQ   62 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeec
Confidence            5799999999999999999999998 49999764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=0.00017  Score=47.05  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            5689999999999999999999999 599998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.26  E-value=0.0002  Score=42.80  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.|.-
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC-cceecCChh
Confidence            4899999999999999999999974 999988653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.24  E-value=0.00024  Score=43.99  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      ++.||.|+|+|.+|+.++..|+..|+ .++.|+|-+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            46799999999999999999999995 6899999654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.21  E-value=0.00027  Score=43.39  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.||.|+|+|.+|+.+|..|+..++.++.++|.+.
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            35899999999999999999999999999998643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=9.1e-05  Score=45.37  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=33.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|++++|+|+|.|.+|.+-++.|..+|. ++++++++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~   46 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            5889999999999999999999999998 599997653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.15  E-value=0.00031  Score=42.09  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      .+||+|||+|.+|.|+|..|...|-. +|+++|++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            46999999999999999999999863 799998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.15  E-value=0.00033  Score=41.72  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|+|+|.|.+|.|+|..|...|.. +++++..
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~   62 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDIL   62 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE-EEEEEec
Confidence            56999999999999999999999985 9999764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.0003  Score=44.79  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+|||+|..|..+|..|...|+..++|++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            4799999999999999999999998899998743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00042  Score=41.29  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|++|+|.|.+|.|+|..|...|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            589999999999999999999998 599997654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00029  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+|++|+|+|.+|+|+|..|...|.. +++++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            46999999999999999999999995 999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00027  Score=44.10  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++|+|+|+||.+..++..|...|+ +|+|++.+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchH
Confidence            3567899999999999999999999998 499997654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00033  Score=41.03  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+++|+|+|.+|+|+|..|...|.. +|+++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTK-VTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCCccceeeeeeecccccE-EEEEEe
Confidence            6999999999999999999999985 999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.09  E-value=0.00032  Score=44.75  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..||+|||+|..|..+|..|...|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999999 59999863

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00042  Score=40.77  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +||+|+|.|.+|+|+|..|...|. ++++++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999998 59999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00034  Score=40.97  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+++++|+|+|.|.+|..-++.|..+|.. +++++++.-
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~   46 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFI   46 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence            47889999999999999999999999985 899887543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00048  Score=42.48  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      -...||.|+|+|.+|+.++..|+..|. .++.|+|-+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            356789999999999999999999996 579999954

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.04  E-value=0.00035  Score=41.38  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .++|+|+|+|.+|+|+|..|...|.. +++++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID-SYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc-ceeeeh
Confidence            47899999999999999999999985 999985

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.03  E-value=0.0004  Score=43.76  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .+.+.||.|+|+|.+|+.++..|+..|+ .++.|+|-+
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4567899999999999999999999997 679999964

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.03  E-value=0.00042  Score=44.04  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ||+|||+|..|.++|..|.+++.+ +++++|...
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999999775 699998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.03  E-value=0.00039  Score=41.19  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..+++|+|.|.+|.|+|..|...|.. +++++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccce-EEEEecc
Confidence            47999999999999999999999985 9998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.01  E-value=0.00033  Score=45.20  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ..|+|||+|.+|+.+|..|+..|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            359999999999999999999996 69999987653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.99  E-value=0.00051  Score=40.21  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+++|+|.|.+|+|+|..|...|.. +++++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~   52 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEA   52 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc-eEEEee
Confidence            46899999999999999999999984 999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.0004  Score=42.88  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.0

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~v   55 (84)
                      +||.|+|+ |.+|+.++..|+..|+ +++.++|-+..
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~   37 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT   37 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc
Confidence            58999996 9999999999999997 89999997543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.98  E-value=0.00054  Score=41.27  Aligned_cols=35  Identities=29%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..++|+|+|+|.+|.|+|..|...|.. +++++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcc-eeeeeecc
Confidence            368999999999999999999999995 99998643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.97  E-value=0.00044  Score=44.31  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++|+|||+|..|..+|..|...|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            589999999999999999999998 59999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.97  E-value=0.00061  Score=41.52  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      .||.|+|+|.+|+.++..|+..|. .++.|+|-+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            379999999999999999999995 7899999544

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00041  Score=46.02  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ++|++.||+++|+|+.|.-+++.|...|.+++.++|.+-+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            5789999999999999999999999999999999998633

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.93  E-value=0.00069  Score=41.82  Aligned_cols=34  Identities=38%  Similarity=0.642  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .+||.|+|+|.+|+.++..|+..|. .++.|+|-+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            3689999999999999999999995 789999854

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.87  E-value=0.00076  Score=41.31  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      ++|+|+|+|-+|+.++++|...|.. +++.+|.+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            3699999999999999999999974 688888764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0007  Score=40.23  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|++|+|.|.+|+|+|..|...|.. +++++..
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK-TSLMIRH   54 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE-EEEEeec
Confidence            36999999999999999999999985 9998763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.85  E-value=0.00071  Score=41.43  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .||.|+|+|-+|+.++++|...|. +++.+|.+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            479999999999999999999998 588888764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00085  Score=42.05  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=30.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +..||+|||+|-.|-..|..|...|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 5999876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.78  E-value=0.001  Score=40.94  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +||.|+|+|.+|+.++..|++.|+ .++.|+|-+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            689999999999999999999997 5799999644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.78  E-value=0.001  Score=39.27  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+++|+|.|.+|+|+|..|...|.. ++++..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~   53 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE-VTVLEA   53 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-eEEEEe
Confidence            47899999999999999999999996 888754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.001  Score=40.27  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .-+||.||| .|-.|..++++|...|. .++++|.+.-.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~   45 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWA   45 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccccc
Confidence            346999999 89999999999999999 49999876543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.75  E-value=0.00091  Score=41.78  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+|+|||+|..|...|..|+..|. +++|++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            479999999999999999999999 59999863

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00091  Score=42.55  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      -..+||+|||+|+.|-+.|..|++.|. +++|+|.+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc
Confidence            356899999999999999999999998 5999987653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.71  E-value=0.0012  Score=38.46  Aligned_cols=34  Identities=12%  Similarity=0.197  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ..++|+|+|.|.+|+|+|..|...|.. +++++..
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~~   54 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVRT   54 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchh-heEeecc
Confidence            358999999999999999999999975 8888754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.70  E-value=0.00078  Score=40.65  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=27.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +||+|+|.|.+|.|+|..|.. +. ++++++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEeccc
Confidence            589999999999999999975 43 799997643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.68  E-value=0.0014  Score=40.18  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .||.|+|+|.+|+.++..|+..|. .++.|+|-+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            479999999999999999998886 789999854

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.68  E-value=0.0015  Score=39.97  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~   54 (84)
                      +.||.|+|+|.+|+.++..|...|. .++.|+|-+.
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            3589999999999999999999987 5699998443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.67  E-value=0.0011  Score=41.40  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-----cEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-----SVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-----~i~l~D~d~   54 (84)
                      .||+|||+|-+|..+|..|...|.+     +.++++.+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            4799999999999999999999975     566666543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.67  E-value=0.0013  Score=40.94  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++|.+||+|..|..++++|...|.. ++++|.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCH
Confidence            57899999999999999999999995 89998654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.0014  Score=39.87  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .||.|+|+|.+|+.++..|+..+. .++.|+|-+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            479999999999999999999987 679999853

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.65  E-value=0.00095  Score=45.11  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|+|||+|-.|..+|..|+..|. +++|+|...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            47899999999999999999999997 589998643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.61  E-value=0.0013  Score=39.25  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+++|+|.|-+|+|+|..+...|.. +++++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCE-EEEEEe
Confidence            46999999999999999999999985 999865

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.001  Score=41.56  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++++++|+|+|+||++..++..|  .+.++|+|+..+
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR~   49 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANRT   49 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECSS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH--ccccceeeehhh
Confidence            357999999999999999999887  566799999664

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.58  E-value=0.0021  Score=37.58  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=28.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~   52 (84)
                      ..+++|+|.|.+|+|+|..|...|..  ++++++.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~   54 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYR   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEec
Confidence            46999999999999999988877764  6999975

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.0024  Score=38.67  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~   54 (84)
                      +.+|+|||.|.+|.|+|..|...|.. .++++++..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            67899999999999999999999985 455555543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.55  E-value=0.0018  Score=39.31  Aligned_cols=34  Identities=15%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.++|+|-+|..+++.|..+|-.++.++|.+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            3799999999999999999999977899998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.0015  Score=39.11  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             CcEEEE-cCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLI-GVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vliv-G~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .||.|+ |+|++|..+|+.|+..|.. +++++.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            478999 7999999999999999996 88988764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.49  E-value=0.0017  Score=40.02  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d   53 (84)
                      .||.|+|+ |.+|+.++..|+..|+ +++.|+|.+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            37999996 9999999999999995 899999975

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0017  Score=41.33  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|-.|+.+|..++.+|.. ++++|.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence            6899999999999999999999985 99998865

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.46  E-value=0.0018  Score=39.71  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .||.++|+|-.|..+|++|...|.. ++++|.+.-.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~   35 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEA   35 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcch
Confidence            3799999999999999999999995 8888865443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.44  E-value=0.0019  Score=41.77  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+.++|+|-|.|.+|..+++.|...|. ++++.|.|.-
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~   61 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTE   61 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHH
Confidence            4788999999999999999999999996 5888887643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.44  E-value=0.0022  Score=39.62  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.+|.|||+|-.|+.++++|...|.. +.++|.+.
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~   34 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTY   34 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCH
Confidence            35799999999999999999999985 88998754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.43  E-value=0.0019  Score=39.66  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .+|.+||+|-.|+.++++|...|. ++.++|.+.-.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~   36 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSA   36 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhh
Confidence            479999999999999999999998 58898876443

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.43  E-value=0.0033  Score=38.44  Aligned_cols=35  Identities=6%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      ++++|+|+|.|.+|.|+|..|...|.. .++++.+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            357899999999999999999999975 45555443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.41  E-value=0.0017  Score=38.39  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+++|+|+|-+|.|+|..|...|. ++|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            4699999999999999999999998 5999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.40  E-value=0.00093  Score=41.99  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC------cEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK------SVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~------~i~l~D~d~   54 (84)
                      ..||+|||+|+.|-+.|..|...|..      +++++|...
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            45899999999999999999999953      589998743

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0014  Score=43.20  Aligned_cols=40  Identities=28%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             HHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          14 YQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        14 ~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ++++|+++.++|.| .+|+|.++++.|+..|. ++.+.|.+.
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~   44 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV   44 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            35679999999998 78999999999999998 488888654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.37  E-value=0.0023  Score=41.28  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+|||+|-.|+.+|..|+..|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999998 599998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.36  E-value=0.0026  Score=40.94  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|.|.+|.++++.|...|.. +..+|+..
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~   76 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFR   76 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhccc-ccccCccc
Confidence            58899999999999999999999999985 77788643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.36  E-value=0.002  Score=40.68  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|.|+|+|-+|+.+|..++.+|.. ++++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            4799999999999999999999985 99999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.36  E-value=0.0028  Score=39.53  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...|+|+|+|++|...+..+...|..++..+|.+.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            55799999999999999999999999999998643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.34  E-value=0.0027  Score=39.53  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|+|++|...+..+...|..++..+|.+.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            466899999999999999999999999999998754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.33  E-value=0.0018  Score=42.69  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~   39 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNR   39 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            478999999998 789999999999999985 99998753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.32  E-value=0.0022  Score=42.83  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      +||+|||+|..|..+|++|...|.+ ++++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5899999999999999999988874 69998765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0035  Score=38.44  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|...+..+...|..++.++|.+.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            46899999999999999999999999999998754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.003  Score=38.02  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.-|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            3458999999999999999999997 59999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.29  E-value=0.0033  Score=39.09  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|...+..+...|..++..+|.+.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            45799999999999999999999999999998754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.28  E-value=0.0025  Score=38.60  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .||.|+|+|-.|+.++++|...|.. ++++|.+.-
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVE-VVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCE-EEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCe-EEEEcCchh
Confidence            4799999999999999999999984 777765543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.28  E-value=0.0028  Score=39.81  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=34.1

Q ss_pred             HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..|++++|+|.| .||+|.++++.|+..|. +++++|.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~   57 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL   57 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch
Confidence            3467999999999 79999999999999997 589988764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.002  Score=40.26  Aligned_cols=37  Identities=11%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+++++|+|+|+||.+-.++..|.. |..+++|+....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccchH
Confidence            3577899999999999999999986 668899997753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.004  Score=37.55  Aligned_cols=34  Identities=9%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +-||+|+|+|.+|..+++.|...|.. ++++|.|.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccc
Confidence            45899999999999999999999985 88887764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.23  E-value=0.0037  Score=38.80  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+.+|+|||.|..|.+.|.+|++.|.+ ..++|...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            357899999999999999999999996 67777543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.20  E-value=0.0037  Score=39.59  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|+.++|.|+|.|.+|.++++.|...|. ++..+|....+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~   77 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE   77 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccccc
Confidence            3789999999999999999999999999 58888876543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.15  E-value=0.0042  Score=38.74  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+|+|+|+|++|...+..+...|.+.+++.|...-
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            368999999999999999999999999999987653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.15  E-value=0.0044  Score=38.40  Aligned_cols=33  Identities=15%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      .||+|+|+|.+|.|+|..|...+-+ ++++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4799999999999999999988764 68998754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.11  E-value=0.0027  Score=41.51  Aligned_cols=57  Identities=19%  Similarity=0.420  Sum_probs=41.0

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcccc-----ccCCCCcccccCCccCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTK-----EDVNTAQFLAPHEDIGK   74 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~-----~nl~~~~~~~~~~diGk   74 (84)
                      +||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.-+.     .+. +.+.++-.-|+..
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs~   63 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNL-GRRVLTVKCDVSQ   63 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHT-TCCEEEEECCTTC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHc-CCcEEEEEeeCCC
Confidence            478999999998 689999999999999994 88888754322     234 3343333455543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0042  Score=38.42  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|..++..+...|..+++++|.+.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            47899999999999999999999998899998743

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.10  E-value=0.0037  Score=39.95  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|||+|..|.+.|..|...|.. ++++|...
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc-eeeEeecc
Confidence            568999999999999999999999984 99997543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.04  E-value=0.0045  Score=37.90  Aligned_cols=32  Identities=34%  Similarity=0.525  Sum_probs=28.6

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCC-cEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVK-SVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~-~i~l~D~   52 (84)
                      +||.|+| +|.+|+.++..|...|+- ++.|+|-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            5899999 699999999999999874 6999984

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.04  E-value=0.005  Score=38.87  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.-|+|||+|..|...|..|+..|. +++|+|...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            3469999999999999999999998 499998643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.02  E-value=0.0058  Score=39.08  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|.+++|.|+|.|.+|.++++.|...|+. +..+|+...
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   79 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPM   79 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCCccc
Confidence            57889999999999999999999999986 777887543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.02  E-value=0.0054  Score=38.42  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+..++|||+|+.|.+.|..+++.|.+ ++|+|.+.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~~~   39 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQAL   39 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCC-EEEECSSCT
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            457899999999999999999999985 999987653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.98  E-value=0.0039  Score=39.87  Aligned_cols=37  Identities=27%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|..++|.|+|+|.+|.++++.|...|+. +..+|+..
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~   82 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYL   82 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTS
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccCcc
Confidence            47889999999999999999999988885 77777753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0049  Score=39.53  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+|||+|..|...|..|...|. +++|+|..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            8999999999999999999998 69999863

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.97  E-value=0.0044  Score=40.87  Aligned_cols=38  Identities=11%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+|+++.++|.| .+|+|.++++.|+..|. ++.+.|.+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            478899999998 89999999999999997 599998764

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=95.96  E-value=0.0025  Score=43.82  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=34.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHh----------CCCcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILS----------GVKSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~----------Gv~~i~l~D~d~v   55 (84)
                      ++|++.||++.|+|+.|..+++.|+.+          +.++|.++|.+-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            578999999999999999999999865          5678999998544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.93  E-value=0.0068  Score=37.32  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|+|++|...+..+...|...+.+.|.+.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            456899999999999999999999999999988644

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.90  E-value=0.0067  Score=38.41  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|+|++|...+..+...|..++.++|.+.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            345899999999999999998899999999998864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.90  E-value=0.005  Score=40.47  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            78999999998 789999999999999985 89998653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.89  E-value=0.0065  Score=37.68  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.-|+|||+|+.|.+.|..+++.|.+ ++++|..
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~k-V~vie~~   35 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFK-TTCIEKR   35 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCC-EEEEECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence            34689999999999999999999985 8888863

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.0057  Score=39.24  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||+|+.|...|..|+..|.+ +.|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            45799999999999999999999975 8999865

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.86  E-value=0.0023  Score=44.20  Aligned_cols=40  Identities=20%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHh----------CCCcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILS----------GVKSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~----------Gv~~i~l~D~d~v   55 (84)
                      ++|.+.||++.|+|+.|..+++.|+.+          +.++|.++|.+-+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            578999999999999999999999876          3447999998544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0062  Score=37.90  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .-|+|||+|..|.+.|..+++.|.+ +.|+|.+.+
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~~~   36 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQK-CALIEAKEL   36 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCE-EEEEeccCc
Confidence            3589999999999999999999985 999987654

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=43.73  Aligned_cols=39  Identities=28%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCC----------CcEEEEeCCc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGV----------KSVCLLDSGV   54 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv----------~~i~l~D~d~   54 (84)
                      ++|++.||++.|+|+.|.-+++.|+.+++          ++|.++|.+-
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            57899999999999999999999887765          5799999854

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.80  E-value=0.0075  Score=39.25  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d   53 (84)
                      +..+.-|+|||+|..|..+|..|+. .|.+ ++++|..
T Consensus        30 ~~~e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESS
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHccCCe-EEEEecC
Confidence            4557889999999999999999987 6995 9999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.005  Score=40.93  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|+|||+|..|+.+|..|+..|. +++|+|..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            58999999999999999999996 59999863

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.77  E-value=0.0054  Score=40.05  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHH-----HhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNII-----LSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~-----l~Gv~~i~l~D~d~   54 (84)
                      .-|+|||+|.+|..+|..|+     +.|+. ++|+|...
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence            35899999999999999997     47896 99998643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0063  Score=39.88  Aligned_cols=37  Identities=27%  Similarity=0.520  Sum_probs=32.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+.+.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~   40 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDE   40 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            78899999998 789999999999999985 88988653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.75  E-value=0.01  Score=34.26  Aligned_cols=32  Identities=22%  Similarity=0.115  Sum_probs=26.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHh---CCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILS---GVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~---Gv~~i~l~D~   52 (84)
                      .++++|+|.|.+|.|+|..|...   |. ++++++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~   52 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYR   52 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEES
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceecc
Confidence            36999999999999999988765   44 6888875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0051  Score=40.09  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            68889999987 89999999999999997 599988754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.0067  Score=39.46  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            47888899998 689999999999999985 88888653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.69  E-value=0.0042  Score=41.09  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+.+.++|-| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            57888999998 789999999999999985 99988653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.69  E-value=0.0068  Score=40.07  Aligned_cols=36  Identities=25%  Similarity=0.635  Sum_probs=31.8

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47888999998 78999999999999998 58898865

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.68  E-value=0.0058  Score=38.57  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+...+|.|+|+|.+|.++++.|...|.. +..+|....
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   78 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRL   78 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCC
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeeccc
Confidence            46789999999999999999999988985 888886543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.005  Score=40.58  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|. ++.+.|.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            58889999998 78999999999999998 599998653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0044  Score=38.15  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +..+|+|||.|..|.+.|..|.+.|.+ ++|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            456899999999999999999999995 7888754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.013  Score=37.17  Aligned_cols=40  Identities=23%  Similarity=0.479  Sum_probs=33.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCC-CcEEEEeCCccc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGV-KSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv-~~i~l~D~d~v~   56 (84)
                      ++++++|+|.| .|-+|+++++.|...|. .+++++..+...
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            57888999998 79999999999999885 578888765443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.66  E-value=0.0072  Score=39.22  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=31.9

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|+.+.++|.| .+|+|.++++.|+..|.. +.+.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            67889999998 778999999999999984 88887654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.65  E-value=0.0054  Score=41.15  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...|+|||+|..|-.+|+.|...|+ .++++|..
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~   39 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIETA   39 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEcC
Confidence            4579999999999999999999999 58999863

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0091  Score=37.60  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .++.++|.|+|.|.+|.++++.|...|.. +..+|...-.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~   79 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIENKL   79 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCC
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeeccccccc
Confidence            47899999999999999999999988886 8888865443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.65  E-value=0.0073  Score=39.50  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|-| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            68889999998 689999999999999995 88888654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.009  Score=36.64  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ..+|+|||.|-+|.++|..+.+.|..+++++-
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~   76 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVF   76 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence            46899999999999999999999999999873

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.59  E-value=0.0066  Score=39.86  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            57888899998 789999999999999985 99988653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.57  E-value=0.0054  Score=40.19  Aligned_cols=37  Identities=35%  Similarity=0.535  Sum_probs=32.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            68899999998 789999999999999985 88888654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.57  E-value=0.0052  Score=40.25  Aligned_cols=36  Identities=28%  Similarity=0.558  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ||++++++|.| .+|+|.++++.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGAR-VAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            47888999998 799999999999999984 8888864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.56  E-value=0.0059  Score=39.89  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            68889999998 889999999999999985 88988643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.56  E-value=0.0086  Score=38.57  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=33.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      |++++++|.| .+|+|.++++.|+..|.. +.+.|.+.-..+..
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKRS   44 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHhc
Confidence            6788999998 789999999999999984 88888764333344

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.55  E-value=0.0059  Score=39.99  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ||+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            68888888888 789999999999999985 99998753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.54  E-value=0.0098  Score=38.90  Aligned_cols=36  Identities=17%  Similarity=0.527  Sum_probs=30.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+++.|+|.| .+|+|.++|+.|+..|..-+.+.+.+
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6788999998 77999999999999999866665543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.012  Score=36.55  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.-|+|||+|+.|.+.|..+++.|- ++.++|.+.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            3458999999999999999999997 5999998765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.52  E-value=0.012  Score=36.22  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.-|+|||+|+.|.+.|..+++.|. ++++++.+.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            3568999999999999999999998 5999987654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.51  E-value=0.012  Score=35.69  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|+|++|...+..+...|. ++..+|.+.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchHH
Confidence            35789999999999999999999997 688888754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.46  E-value=0.013  Score=36.35  Aligned_cols=36  Identities=28%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .-|+|||+|+.|-++|.++++.|-+++.++|...+.
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~   39 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH   39 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc
Confidence            458999999999999999999999889999876543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.011  Score=37.95  Aligned_cols=37  Identities=22%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+.+.++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~   39 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPN   39 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            36778888888 789999999999999995 88988654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.012  Score=36.58  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.-|+|||+|+.|.+.|..+++.|.+ +.|+|..
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~k-V~lie~~   37 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFN-TACVEKR   37 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence            44689999999999999999999995 8888853

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.44  E-value=0.0085  Score=38.57  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             HhhcCcEEEEcC-C--hhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIGV-E--GVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG~-g--g~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|++++++|.|+ |  |+|.++++.|+..|.. +.+.+.+.-
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChH
Confidence            578999999995 3  6999999999999985 888876653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.44  E-value=0.011  Score=38.56  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      ..-|+|||.|..|..+|..|+..|.+ ++|+|.....
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~~~   51 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAK-VILIEKEPVI   51 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCCC
Confidence            45799999999999999999999985 9999977654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.44  E-value=0.011  Score=38.83  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |++++++|.| .+|+|.++++.|+..|. ++.+.|.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~   40 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNE   40 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            6788999998 88999999999999998 599998754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.42  E-value=0.0042  Score=39.35  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -.||+|+|+|.-|+.++..|+..|- ++++++.+
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            3579999999999999999999886 58888754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.35  E-value=0.014  Score=35.33  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|.|+||+|...+..+..+|...+...|.+.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            45789999999999999999999999998887653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.35  E-value=0.015  Score=35.55  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+|+|+|+||+|...+..+...|..++..+|.+.-
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            57999999999999999999999999999987554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.014  Score=34.72  Aligned_cols=33  Identities=27%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH----hCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL----SGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l----~Gv~~i~l~D~d   53 (84)
                      .++++|+|.|.+|+|++-.|..    .|+ ++++++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccc
Confidence            5689999999999999999864    566 58888763

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.31  E-value=0.01  Score=39.03  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+.++|+|-|.|.+|.++++.|...|.. ++..|.+.
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~~   72 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNK   72 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecccH
Confidence            37888999999999999999999999975 77777643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.31  E-value=0.0073  Score=39.46  Aligned_cols=38  Identities=16%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .|+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.-
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~   44 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAA   44 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHH
Confidence            36788888888 788999999999999984 999987654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.011  Score=38.52  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~   39 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNL   39 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            6788899998 789999999999999984 99998653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.011  Score=39.63  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+++.++|.| .+|+|.++++.|+..|.. +.+.|.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~   45 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRK   45 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            68999999998 789999999999999985 8898865

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.30  E-value=0.0094  Score=38.61  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEcC-C--hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGV-E--GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~-g--g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|++++++|.|+ |  |+|.++++.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~   40 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLN   40 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            478999999995 4  7999999999999996 8888864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.011  Score=38.28  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+.++++|.| .+|+|.++++.|+..|.. +.++|.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCH
Confidence            36788999998 889999999999999984 88988754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0095  Score=38.26  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|++++++|.|++   |+|.++++.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~   40 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   40 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCC
Confidence            4788999999864   6999999999999986 8888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.22  E-value=0.018  Score=35.15  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|...+..+...|...+..+|.+.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            57899999999999999999999999999988764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.20  E-value=0.012  Score=37.05  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      ++|.|+|+|-+|..+|-.|+..|.. ++.+|.+.-....+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLI   39 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHh
Confidence            4799999999999999999999984 88999865444444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.15  E-value=0.012  Score=37.39  Aligned_cols=39  Identities=15%  Similarity=0.246  Sum_probs=32.8

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..++.+++.|+|.|.+|.++++.|...|.. +..+|+..-
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   81 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRA   81 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCC
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccc-ccccccccc
Confidence            356789999999999999999999988986 667776443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.012  Score=38.42  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |++++++|.| .+|+|.++++.|+..|. ++.+++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            7889999998 78999999999999997 588888653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.08  E-value=0.011  Score=35.83  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .||.++|+|-+|+.+++.|..+|- ++++.|.+.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCC-eEEEEcChH
Confidence            479999999999999999998874 688887653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.07  E-value=0.011  Score=38.69  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+++.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            36788889998 78999999999999998 588888653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.05  E-value=0.014  Score=37.65  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|++++++|.|++   |+|.++++.|+..|.. +.+.|..
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~   43 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQA   43 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCc
Confidence            3678899999975   7999999999999985 8787754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.04  E-value=0.016  Score=36.94  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +++||+|.| .|-+|.++++.|...|. +++.++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R   35 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFR   35 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            468899999 58899999999999996 4766654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.04  E-value=0.012  Score=38.73  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .|+.++|+|-|.|-+|+.+++.|...|.+-+.+-|.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            578899999999999999999999999875556554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.016  Score=34.88  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -|+|||.|+.|.+.|..+.+.|.+ +.++|.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEEe
Confidence            489999999999999999999996 7777753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.99  E-value=0.014  Score=38.10  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             hhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      |++++++|.|++   |+|.++++.|+..|.. +.+.+.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            688999999975   7999999999999986 777653

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.017  Score=36.65  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v   55 (84)
                      +||+|||+|+.|-+.|...+++|.+  +++++|.+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            5899999999999999999999875  5788887664

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.98  E-value=0.019  Score=37.84  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=31.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .+++||||.| .|-+|+++++.|...|.. +..+|...-
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCC
Confidence            6889999999 566999999999999984 888876443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.97  E-value=0.012  Score=38.46  Aligned_cols=50  Identities=24%  Similarity=0.291  Sum_probs=37.2

Q ss_pred             ccccccCCCcHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593           2 FSAIITSSSILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus         2 ~~~~~~~~~~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+++--|...  .-..|+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         2 ~~~~~~~~~~--~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~   52 (272)
T d1g0oa_           2 YDAIPGPLGP--QSASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANS   52 (272)
T ss_dssp             TTCCCSCSSG--GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCCCCCCCCC--CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCc
Confidence            3444444443  22358889999998 899999999999999996 88887653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.96  E-value=0.022  Score=34.58  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|+|+|++|...+..+...|..+++.+|...
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            345799999999999999999999999999998654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.95  E-value=0.017  Score=37.65  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+.+.++|-| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47788899998 89999999999999998 58888865

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.92  E-value=0.015  Score=37.64  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .|++++++|.| .+|+|.++++.|+..|.. +.+.|.+.-.
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~   43 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGA   43 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcch
Confidence            36888999998 679999999999999985 8888876543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.91  E-value=0.025  Score=34.61  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +.-|+|||+|+.|...|.++++.|.+ +.++|...
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~-V~viE~~~   36 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLK-TALIEKYK   36 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCC-EEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEeccc
Confidence            45689999999999999999999985 88888643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.89  E-value=0.021  Score=35.84  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -|+|||+|+.|.+.|..+++.|. +++|+|..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~   38 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERY   38 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            48999999999999999999998 58898854

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.87  E-value=0.019  Score=38.13  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -|+|||.|..|+.+|..|+.+|.+ +.+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQ-TLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCe-EEEEecC
Confidence            489999999999999999999985 8888874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.035  Score=34.38  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..+||+|.| .|.+|+++++.|...|. ++++++.+.-
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~   38 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSS   38 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChh
Confidence            457899999 58899999999999997 5888865443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.81  E-value=0.021  Score=36.55  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      .++|+|.| .+|+|.++++.|+..|.. +.++|...-
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcc
Confidence            57899998 689999999999999985 778876443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.80  E-value=0.015  Score=38.17  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=33.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKE   58 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~   58 (84)
                      ++.-|+|||.|..|...|..++..|.+ +.|++...+...
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g   42 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRS   42 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGS
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCC
Confidence            455699999999999999999999995 999988776543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.027  Score=34.22  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=28.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ...+|+|+|+|++|...+..+...|.+ +..+|..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~   60 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRS   60 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcccc-ccccccc
Confidence            457899999999999999998899985 6667753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.77  E-value=0.018  Score=39.55  Aligned_cols=33  Identities=18%  Similarity=0.523  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH------hCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL------SGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l------~Gv~~i~l~D~d   53 (84)
                      +.-|+|||+|+.|+..|..|++      .|++ +.|+|..
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~   70 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKA   70 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCC
Confidence            4689999999999999999997      7885 8888864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.026  Score=34.35  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHh-C-CCcEEEEeCCcc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILS-G-VKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~-G-v~~i~l~D~d~v   55 (84)
                      .||.|+| +|.+|+.++..|... + +.++.++|-+..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~   38 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV   38 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence            4799999 599999999888754 5 578999996543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.021  Score=36.98  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+.++++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~   39 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTN   39 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            5778889988 689999999999999985 88888653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.66  E-value=0.016  Score=38.00  Aligned_cols=32  Identities=22%  Similarity=0.567  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .-|+|||.|..|+.+|+.|+.+|. ++.+++..
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G~-kVlvLEaG   36 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAGY-KVAMFDIG   36 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccEEEECcCHHHHHHHHHHhhCCC-eEEEEecC
Confidence            358999999999999999999998 58888764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.66  E-value=0.02  Score=37.51  Aligned_cols=36  Identities=31%  Similarity=0.555  Sum_probs=31.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+.+.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~   39 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLD   39 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            6788899998 779999999999999995 89988653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.012  Score=38.53  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=31.2

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+.+.++|.| .+|+|.++++.|+..|.. +.+.|.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~   44 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN   44 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            47788888888 789999999999999985 8888864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.62  E-value=0.031  Score=35.14  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=28.8

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++||+|.| .|-+|+.+++.|...|. +++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECC
Confidence            468999999 58999999999999997 57777654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.59  E-value=0.023  Score=37.04  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+.+.++|.| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   41 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN   41 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            6788888888 67999999999999998 49998865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=94.55  E-value=0.023  Score=37.33  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..-|+|||+|..|...|..|+..|.+ +.|++....
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~~   57 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAK-VILLEKEPI   57 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            45799999999999999999999985 999987654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.53  E-value=0.02  Score=35.82  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -|+|||+|+.|-+.|.++++.|.+ +.++|...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCC-EEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            489999999999999999999996 88887543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.52  E-value=0.033  Score=33.50  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|...+..+-..|. ++..+|...
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC-ccceecchh
Confidence            5679999999999999999999995 688887653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.47  E-value=0.022  Score=35.24  Aligned_cols=34  Identities=12%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      .++.+||+|||+|..|..++..++..+.....+.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            4788999999999999999999999998765554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.41  E-value=0.028  Score=34.80  Aligned_cols=30  Identities=13%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ++|.|+|+|..|+.+|..|+..|. +++++.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~   30 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWG   30 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            479999999999999999999997 588874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.41  E-value=0.022  Score=37.29  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .|+++.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSK   41 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            47888888887 799999999999999985 88887653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.37  E-value=0.022  Score=36.28  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      ..||+|.| .+|+|.++++.|+..|.. +.++|.+.-
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCch
Confidence            45899998 899999999999999985 888886543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.029  Score=37.00  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++||||.| +|-+|+++++.|...|- .++.+|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            57899998 88999999999999996 5888874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.30  E-value=0.026  Score=37.55  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -|+|||.|..|+.+|..|+.+|.+ +.+++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIP-TQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            489999999999999999999984 8888864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.30  E-value=0.03  Score=35.20  Aligned_cols=36  Identities=25%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.-|+|||+|+.|-..|.++++.|.+++.++|.+..
T Consensus         3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            345899999999999999999999988999987654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.29  E-value=0.037  Score=35.48  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      -++|||+|+.|...|..++..|.+ +.|+|.+.+-
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~-V~liE~~~~G   36 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAK-VALVEKSRLG   36 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEEESSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence            379999999999999999999985 9999987653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.29  E-value=0.027  Score=33.89  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=23.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ||.++|+|-.|..+++||...|.  ..+++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~   30 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNR   30 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeC
Confidence            79999999999999999998775  344543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.29  E-value=0.019  Score=37.29  Aligned_cols=36  Identities=28%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+++.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~   44 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQ   44 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            5677788888 68999999999999998 588988753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.27  E-value=0.035  Score=34.82  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++++|-| .+|+|.++++.|+..|.. +.+.|.+
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~   34 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYR-VVVLDLR   34 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            5677777 699999999999999985 8888854

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.27  E-value=0.038  Score=36.38  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      .-|+|||+|..|...|..++..|.+ +.|++.....
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~~~~   54 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGAN-VILVDKAPFS   54 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCC-EEEECSSSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCCC
Confidence            3499999999999999999999985 8999876654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.27  E-value=0.03  Score=38.12  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=31.3

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .|+.++|+|-|.|-+|..+++.|...|.+=+.+-|.
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence            367789999999999999999999999876666664

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=94.23  E-value=0.032  Score=35.74  Aligned_cols=31  Identities=29%  Similarity=0.533  Sum_probs=27.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      ..++|.| .+|+|.++++.|+..|.+++.++-
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~   41 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVS   41 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            4677777 899999999999999998888873

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.17  E-value=0.023  Score=36.97  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=29.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+++.++|.| .+|+|.++++.|+..|. ++.+.|..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4667777777 78999999999999998 58888764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.027  Score=36.44  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |+++.++|-| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~   38 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSE   38 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCH
Confidence            5677788887 789999999999999985 88888653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.036  Score=33.56  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=27.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+|++|...+..+...|...+ ++|...
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~~~   64 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTTSE   64 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccch-hhccch
Confidence            4679999999999999999999999765 565533

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.048  Score=35.82  Aligned_cols=36  Identities=25%  Similarity=0.550  Sum_probs=30.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHH--hCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIIL--SGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l--~Gv~~i~l~D~d~   54 (84)
                      -.++.|+|||+|+.|...|..|+.  .|.+ ++++|...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~-~~~~~~~~   85 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESSV   85 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEEcCC
Confidence            456779999999999999999995  4775 99998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.033  Score=35.05  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v   55 (84)
                      ...++|+|.|..|.++|..|...|. ++|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3468999999999999999998886 47999986543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.01  E-value=0.033  Score=33.75  Aligned_cols=31  Identities=16%  Similarity=0.170  Sum_probs=25.2

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD   51 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D   51 (84)
                      -++|+|.| .|.+|.++++.|...|-. +++++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            36899999 799999999999999964 44443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.97  E-value=0.021  Score=38.30  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|+++.++|-| .+|+|-++++.|+..|.. +.+.|.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~   40 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLG   40 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            46788888888 789999999999999985 8888754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.057  Score=31.40  Aligned_cols=40  Identities=28%  Similarity=0.344  Sum_probs=33.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKED   59 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~n   59 (84)
                      ...||.|+|.|-+|--++..-...|+. +.++|++.-.+.-
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~PA~   49 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAPAM   49 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCGGG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCchh
Confidence            345899999999999999999999996 8888987766653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.91  E-value=0.032  Score=34.94  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .+..+++.|+|.|.+|.++++.+...|. ++..+|+.
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~   76 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPY   76 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc-eEEeecCC
Confidence            4678899999999999999999998887 47777753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.91  E-value=0.034  Score=36.96  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .|+.++|+|=|.|-+|..+++.|...|.+-+.+-|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4788999999999999999999999999877776653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.013  Score=35.17  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=24.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKS   46 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~   46 (84)
                      .+||+|+|.|.+|+++|..+.+.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            469999999999999999999999754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.88  E-value=0.058  Score=32.46  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+|+|+|+ |++|..++..+...|..+++++|.+.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            457999995 99999999999999999999998754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.85  E-value=0.0077  Score=35.83  Aligned_cols=36  Identities=11%  Similarity=0.161  Sum_probs=26.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCCcc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSGVV   55 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d~v   55 (84)
                      +-+|+|+|+|.+|..+++.|-. .|..=+.++|+|.-
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            3489999999999999987643 34555667787653

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.85  E-value=0.043  Score=36.84  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=28.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +||||.| +|-+|+++++.|...|...+..+|..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4799998 56699999999999999877778754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.81  E-value=0.034  Score=36.03  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      |..+.++|.| .+|+|.++++.|+..|.. +.+.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~   38 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYG   38 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            6677888887 789999999999999997 666543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.81  E-value=0.049  Score=32.41  Aligned_cols=35  Identities=9%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             hcCcEEEE--cCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLI--GVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vliv--G~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      -..+|+|+  |.|-+|+|+|..|+..|. ++|++....
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            34566666  899999999999999997 599998754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.79  E-value=0.038  Score=36.65  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +++||+|.| .|=+|+++++.|...|. +++.+|..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            588999998 88899999999999997 57777754

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.77  E-value=0.032  Score=36.11  Aligned_cols=41  Identities=15%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcE--EEEeCCcccccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSV--CLLDSGVVTKED   59 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i--~l~D~d~v~~~n   59 (84)
                      .+.+|.|+|+||.|+.++.+|...|+..+  ..+|.|.-..+.
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~   56 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR   56 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHT
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhc
Confidence            56899999999999999999999998654  455776544433

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.035  Score=30.77  Aligned_cols=37  Identities=11%  Similarity=0.139  Sum_probs=31.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKE   58 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~   58 (84)
                      ++|.|+|.|-+|.-++..-...|+. +.++|++.-.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~~pa   38 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAEPAA   38 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSCGGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCCCcc
Confidence            5899999999999999999999996 888988765543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.74  E-value=0.03  Score=35.07  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHhCC-C-----cEEEEeCCc
Q psy9593          19 RATKILLIGV-EGVGAEIAKNIILSGV-K-----SVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~-gg~G~eiak~L~l~Gv-~-----~i~l~D~d~   54 (84)
                      +..||+|+|+ |.+|..++..|+...+ |     .+.++|-+.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            3458999996 9999999999987654 2     466666544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.51  E-value=0.057  Score=34.15  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.1

Q ss_pred             EEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          23 ILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        23 vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |+|.| .+|+|.++++.|+..|.. +.++|..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~-V~~~~~~   34 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQ-IVGIDIR   34 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            45556 789999999999999996 8888854

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.05  Score=34.42  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=26.0

Q ss_pred             EEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          23 ILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        23 vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      |||.| +|=+|+++++.|...|...++.+|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            78888 5569999999999999888999873

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.053  Score=35.15  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      |..+.++|.| .+|+|.++++.|+..|.. +.+.|...
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~   41 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINK   41 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            5667777777 788999999999999995 99988754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.43  E-value=0.035  Score=34.02  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSG-----VKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~G-----v~~i~l~D~d~   54 (84)
                      .||.|+|+|++|...+-...+.+     +.++.|+|-+.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            37999999999988775544333     57899999754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.39  E-value=0.035  Score=33.70  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCC
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGV   44 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv   44 (84)
                      .||.|+|+ |.+|+.++..|+..++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccc
Confidence            48999997 9999999999998775

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.055  Score=34.97  Aligned_cols=35  Identities=31%  Similarity=0.619  Sum_probs=28.7

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ..+.++|.| .+|+|.++++.|+..|.. +.+.|.+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~   37 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNL   37 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            345677777 789999999999999985 99988753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=93.38  E-value=0.047  Score=35.76  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCL   49 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l   49 (84)
                      .-|+|||+|..|+|.|...+++|.+.+.|
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            46899999999999999999999986544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.35  E-value=0.046  Score=36.17  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=24.7

Q ss_pred             cCcEEEEcCCh-hHHHHHHHHHHhCCCcEEEE
Q psy9593          20 ATKILLIGVEG-VGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        20 ~~~vlivG~gg-~G~eiak~L~l~Gv~~i~l~   50 (84)
                      .++|||.|+.| +|+++++.|...|..-+.++
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~v   42 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTA   42 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            58999999555 99999999999997533333

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.33  E-value=0.057  Score=30.63  Aligned_cols=30  Identities=7%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCC
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVK   45 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~   45 (84)
                      ..+++++|+|+|.|..|..++..|+..+-.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~   57 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKH   57 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCS
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCE
Confidence            357899999999999999999999865544

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.22  E-value=0.048  Score=34.84  Aligned_cols=37  Identities=22%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHH--------------------hCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIIL--------------------SGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l--------------------~Gv~~i~l~D~d~   54 (84)
                      +..++|+|||.|-++.-++..|++                    +|+.+++++....
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            457999999999999999999998                    6999999996543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.049  Score=36.07  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=33.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccccc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKED   59 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~n   59 (84)
                      ++.-|+|||.|..|...|..++..|.+ ++|++...+..++
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~-V~lleK~~~~gg~   45 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQT-CALLSKVFPTRSH   45 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCC-CEEECSSCGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCe-EEEEeCCCCCCCc
Confidence            345699999999999999999999985 9999887765543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.17  E-value=0.073  Score=31.65  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      ...+|+|.|+|++|...+..+...|. ++.++|...
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCH
Confidence            45789999999999999998888888 577776533

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.07  E-value=0.073  Score=34.01  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...++|||.|..|.+.|..++..|.+ +++++.
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~k-v~vve~   73 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGR-QLIVDR   73 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence            34599999999999999999999996 677765

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.026  Score=36.62  Aligned_cols=29  Identities=17%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEE
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVC   48 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~   48 (84)
                      ++||+|.| .|-+|+.+++.|...|-..+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~   31 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELV   31 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEE
Confidence            46899998 899999999999998865443

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.97  E-value=0.067  Score=35.06  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSG   53 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d   53 (84)
                      .|+.++|+|-|.|-+|..+++.|.. .|..-+.+.|.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            3778999999999999999999985 588777777754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.96  E-value=0.06  Score=30.47  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=28.5

Q ss_pred             hcCcEEEEcCChhH-HHHHHHHHHhCCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVG-AEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G-~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.++|.++|.||.| +.+|+.|...|. +++-.|..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~   41 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIA   41 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            46789999999999 667999999999 48887754

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=92.94  E-value=0.07  Score=33.34  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      +.++++|+|+||.|-++...+-..+...+.++|+...
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd~~~   37 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKG   37 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCCCTT
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcCCCC
Confidence            4689999999999999999999999988888876444

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.052  Score=33.94  Aligned_cols=38  Identities=16%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      |..++|+|+|-|-+|..+|+.+...|.+ ++++|.|.+.
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~~   59 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPIN   59 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccch
Confidence            5678999999999999999999999985 9999988765

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.75  E-value=0.028  Score=34.16  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=26.4

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCC------CcEEEEeCCc
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGV------KSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv------~~i~l~D~d~   54 (84)
                      ..||.|+|+ |.+|+.++..|+..++      -.+.++|-+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~   44 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP   44 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence            458999995 9999999999986555      2466666543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.74  E-value=0.027  Score=32.81  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=25.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      +||+|+|.|.+|.++++.|...   .+.++|.+.-.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~~   33 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDENV   33 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTTH
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchHH
Confidence            5899999999999999998543   36677665443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.11  Score=34.21  Aligned_cols=40  Identities=13%  Similarity=0.259  Sum_probs=33.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCcccccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVVTKED   59 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v~~~n   59 (84)
                      +.-|+|||.|..|...|-.+...|.+ ++.|++......+|
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            56799999999999999999998776 69999887665544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.64  E-value=0.059  Score=33.25  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      +||.|+|+|-+|..+|-.++ .|. +++.+|-+.=..+.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l   38 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKI   38 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHH
Confidence            47999999999999998776 577 688888876544444

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.085  Score=34.51  Aligned_cols=32  Identities=25%  Similarity=0.582  Sum_probs=26.7

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++||+|.| .|-+|+++++.|...|.. ++.+|.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            47899999 566999999999999974 777774

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.57  E-value=0.042  Score=34.67  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      +||+|.|+ |-+|+.+++.|...|.. +..+|...++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~~D~   38 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVE-VIPTDVQDLDI   38 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTTCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEeechhccC
Confidence            47999995 99999999999988874 77777665543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.56  E-value=0.063  Score=33.99  Aligned_cols=35  Identities=20%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHH--------------------HhCCCcEEEEeC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNII--------------------LSGVKSVCLLDS   52 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~--------------------l~Gv~~i~l~D~   52 (84)
                      +...+|+|||.|-++.-+|+.|+                    ++|+.+++++-.
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~R   91 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGR   91 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECS
T ss_pred             ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEE
Confidence            45789999999999999999887                    689999999954

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.095  Score=34.14  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             HhhcCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeC
Q psy9593          17 RLRATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDS   52 (84)
Q Consensus        17 ~l~~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~   52 (84)
                      .++.++|+|-|.|-+|..+++.|.. .|..-+.+.|.
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecC
Confidence            5789999999999999999999985 58876666554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.54  E-value=0.06  Score=34.48  Aligned_cols=35  Identities=9%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVK-SVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~-~i~l~D~d   53 (84)
                      +.+.|+|-| .+|+|-++++.|+..|.. ++.+...+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~   38 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC
Confidence            346788877 889999999999999964 46655443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.51  E-value=0.091  Score=32.96  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV   60 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl   60 (84)
                      .+.++|+|+|+|-+|...++.....|. .++++|.+.-..+.+
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l   71 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYL   71 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHH
Confidence            468999999999999999999999997 599999876555444

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.45  E-value=0.11  Score=33.23  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCc--EEEEeCCccccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKS--VCLLDSGVVTKE   58 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~--i~l~D~d~v~~~   58 (84)
                      +.|.|+|.||.|+.++..|...|+..  +..+|.|.-..+
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK   41 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence            57899999999999999999999864  445566654433

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.44  E-value=0.096  Score=33.76  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=26.8

Q ss_pred             CcE-EEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKI-LLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~v-livG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +|| +|.| .+|+|.++++.|+..|. ++.+.|.+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            466 5556 78999999999999998 488988753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.42  E-value=0.09  Score=33.78  Aligned_cols=31  Identities=23%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +||||.| +|-+|+.+++.|...|. +++.+|.
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~   32 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5899998 67799999999999997 4777773

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.40  E-value=0.091  Score=35.13  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=27.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +||||.| .|-+|+++++.|...|. +++.+|+
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDn   33 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN   33 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEec
Confidence            6899999 56699999999999996 5888884

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.096  Score=34.20  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=27.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +||||.| .|-+|+.+++.|...|--++..+|...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4799998 566999999999999855688887643

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=92.19  E-value=0.068  Score=34.11  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCc--EEEEeCCccccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKS--VCLLDSGVVTKE   58 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~--i~l~D~d~v~~~   58 (84)
                      .||.|+|.||.|+.++.+|...|+..  +..+|.|.-..+
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   40 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE   40 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence            37999999999999999999999864  455677654443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.07  E-value=0.11  Score=34.09  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +.++|||.| +|-+|+++++.|...|-. +..+|.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            346888888 899999999999999984 777764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.03  E-value=0.15  Score=32.47  Aligned_cols=34  Identities=32%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q psy9593          15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCL   49 (84)
Q Consensus        15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l   49 (84)
                      ..-|++++|.|+|.|+-|-.-|.||--+|+. +++
T Consensus        11 l~~ik~k~IaViGYGsQG~AhAlNLrDSG~~-V~V   44 (182)
T d1np3a2          11 LSIIQGKKVAIIGYGSQGHAHACNLKDSGVD-VTV   44 (182)
T ss_dssp             HHHHHTSCEEEECCSHHHHHHHHHHHHTTCC-EEE
T ss_pred             hHHHCCCEEEEEeeCcHhHHHHhhhhhcCCC-EEE
Confidence            4578999999999999999999999999994 555

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=91.98  E-value=0.1  Score=34.98  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      -++|||+|..|+-+|..|+..|. ++.++...
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~-~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGK-KVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCC-eEEEEEcc
Confidence            47999999999999999999997 68888765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.14  Score=33.10  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             cCcEEEE--cCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLI--GVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vliv--G~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+||.||  |.+|+|-++++.|+..|-.++.+.+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789777  4899999999999988555788887654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.13  Score=33.77  Aligned_cols=31  Identities=23%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +||||.| .|-+|+++++.|...|. +++++|.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            4799998 78899999999999996 5888874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.63  E-value=0.14  Score=32.94  Aligned_cols=31  Identities=32%  Similarity=0.655  Sum_probs=25.9

Q ss_pred             cE-EEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KI-LLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~v-livG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      || +|-| .+|+|.++++.|+..|.. +.+.|.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~-V~i~~r~   35 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLR-VFVCARG   35 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            45 5556 789999999999999985 8898875

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.47  E-value=0.2  Score=32.60  Aligned_cols=40  Identities=28%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHH----hCCCcEEEEeCCccccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIIL----SGVKSVCLLDSGVVTKE   58 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l----~Gv~~i~l~D~d~v~~~   58 (84)
                      ..+.-|+|||+|..|...|..++.    .|. ++.|++.......
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~~~~gg   62 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVERS   62 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTTTC
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCCCCCCC
Confidence            446789999999999999998886    466 4999987666543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.14  Score=33.31  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=25.7

Q ss_pred             CcE-EEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKI-LLIGV-EGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~v-livG~-gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|| ||.|+ |-+|+++++.|...|.. ++-+|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECC
Confidence            478 88885 55999999999999984 7777763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.12  Score=31.24  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=27.1

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          19 RATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        19 ~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ...+|+|.|+ |++|...+..+...|..-+.+.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccc
Confidence            3457999995 999999999999999975555544

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.31  E-value=0.17  Score=31.15  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             cCcEEEEcCChhHHHH--HHHHHHh-C--CCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEI--AKNIILS-G--VKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~ei--ak~L~l~-G--v~~i~l~D~d~   54 (84)
                      +.||.|+|+|++|...  +..|.+. +  ..+|.++|-+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            4689999999999764  3444432 2  35899999863

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.29  E-value=0.08  Score=32.81  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=24.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCc
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILSG-----VKSVCLLDSGV   54 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~G-----v~~i~l~D~d~   54 (84)
                      ++.||.|+|+|++|...+-...+..     +.++.|+|-|.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            3568999999999876443333322     35899998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.08  E-value=0.15  Score=33.43  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      ++++|+|+| .|.+|+++++.|...|.. ++.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l   33 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQ   33 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEE
Confidence            468999998 699999999999999975 5554

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.11  Score=33.61  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccccc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKED   59 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~n   59 (84)
                      +.-|+|||+|..|...|..+...|  ++.|+|...+...+
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g--~V~llEK~~~~gG~   44 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH--QVIVLSKGPVTEGS   44 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS--CEEEECSSCTTC--
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC--CEEEEECCCCCCCc
Confidence            467999999999999998887766  69999987765433

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=91.03  E-value=0.17  Score=34.41  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .--++|||+|..|+.+|.-|+..|--++.|+....
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            46789999999999999999998855688887664

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.91  E-value=0.16  Score=32.26  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKE   58 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~   58 (84)
                      ...++|+|+|+|-+|...++.....|. .++++|-+.-...
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~   66 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKE   66 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHH
Confidence            457899999999999999999999999 5999997655443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.17  Score=33.57  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++|||.| .|-+|+++++.|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5677888 56699999999999996 5777765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.28  E-value=0.21  Score=32.69  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCC-cEEEEe
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVK-SVCLLD   51 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~-~i~l~D   51 (84)
                      .++|||.| .|-+|+.+++.|...|-. +++.+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            47899998 788999999999999854 355555

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.14  E-value=0.23  Score=31.87  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=26.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      ++|||.| .|-+|+++++.|...|.. +..+|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECC
Confidence            5899999 566999999999998874 6666654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.07  E-value=0.14  Score=30.78  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=25.4

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAE-IAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~e-iak~L~l~Gv~~i~l~D~d~   54 (84)
                      .||.|+|+|..|.. .+..|...+--.+.++|.+.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~   36 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP   36 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH
Confidence            48999999999976 56677665444677888764

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.03  E-value=0.15  Score=32.51  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCc--EEEEeCCccc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKS--VCLLDSGVVT   56 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~--i~l~D~d~v~   56 (84)
                      ++|-|+|.||.|+.++.+|...|+..  +..+|.|.-.
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~   39 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQA   39 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHH
Confidence            46889999999999999999999854  5555766443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.87  E-value=0.27  Score=31.35  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             CcE-EEEc-CChhHHHHHHHHHHhCCC------cEEEEeCCc
Q psy9593          21 TKI-LLIG-VEGVGAEIAKNIILSGVK------SVCLLDSGV   54 (84)
Q Consensus        21 ~~v-livG-~gg~G~eiak~L~l~Gv~------~i~l~D~d~   54 (84)
                      ++| +|-| .+|+|.++++.|+..|.+      .+.+.|.+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            355 4556 789999999999999986      366666543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.80  E-value=0.25  Score=32.79  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      .+||+|.| +|-+|+++++.|...+=-+++.+|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            45899998 6779999999998644446999884

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.59  E-value=0.25  Score=32.36  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +.|||.| .|-+|+++++.|...|. +++.+|.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            4577777 78999999999999996 4777774

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.51  E-value=0.14  Score=31.10  Aligned_cols=35  Identities=14%  Similarity=0.313  Sum_probs=25.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCC
Q psy9593          19 RATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSG   53 (84)
Q Consensus        19 ~~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d   53 (84)
                      ++.||.|+|+|.+|...++.|... ++.-+.++|..
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            456899999999999999998753 44334444554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.35  E-value=0.3  Score=31.18  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             EEEE-c-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          23 ILLI-G-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        23 vliv-G-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |++| | .+|+|.++++.|+..|.. +.+.|..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~   34 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCK-VLVNYAR   34 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4444 5 899999999999999985 7776654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.23  E-value=0.16  Score=31.18  Aligned_cols=34  Identities=24%  Similarity=0.089  Sum_probs=22.3

Q ss_pred             CcEEEEcCChhHHH--HHHHHHH---hCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAE--IAKNIIL---SGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~e--iak~L~l---~Gv~~i~l~D~d~   54 (84)
                      .||.|+|+|++|..  ++..+..   ..+++|.++|-+.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e   40 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE   40 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc
Confidence            58999999977643  3333332   2246899999654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.56  E-value=0.27  Score=30.61  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=33.9

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT   56 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~   56 (84)
                      |..++++|+|-|-+|.-+|..|...|.. +++++-|.+.
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~-V~V~E~DPi~   58 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGAR-VYITEIDPIC   58 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSCHHH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCE-EEEEecCchh
Confidence            5677999999999999999999999995 9999888765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.21  E-value=0.24  Score=30.01  Aligned_cols=34  Identities=12%  Similarity=0.289  Sum_probs=25.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~   54 (84)
                      .||.|+|+|..|...++.|... ++.=+.++|.+.
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~   36 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSL   36 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence            4899999999999999998775 333233557654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=87.67  E-value=0.43  Score=30.80  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHhCC-----CcEEEEeCC
Q psy9593          21 TKILLIG-VEGVGAEIAKNIILSGV-----KSVCLLDSG   53 (84)
Q Consensus        21 ~~vlivG-~gg~G~eiak~L~l~Gv-----~~i~l~D~d   53 (84)
                      +||+|.| .|-+|+++++.|...|.     .++..+|.-
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~   39 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCC
Confidence            4799998 78899999999998764     456667654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.66  E-value=0.42  Score=30.31  Aligned_cols=30  Identities=30%  Similarity=0.552  Sum_probs=24.2

Q ss_pred             EEEE-c-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          23 ILLI-G-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        23 vliv-G-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      |.|| | .+|+|.++++.|+..|.. +.+.|..
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~-V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            5555 5 689999999999999985 7776654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.45  E-value=0.43  Score=30.66  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ++++||.| .|-+|+++++.|...|.. ++-+|.
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r   33 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYE-VHGLIR   33 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCE-EEEEEC
Confidence            36788888 788999999999999975 777775

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.42  E-value=0.31  Score=30.60  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=24.4

Q ss_pred             EEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          24 LLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        24 livG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +|-| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         5 lVTGas~GIG~aia~~la~~G~-~Vvi~~r~   34 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGF-RVVVHYRH   34 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             EEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4446 78999999999999998 58888865

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.12  E-value=0.38  Score=32.30  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .-++|||.|..|+-+|.-|+..|=-++.|+....
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4789999999999999999987744688887653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.92  E-value=0.34  Score=28.45  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             hhcCcEEEEcC----ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGV----EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~----gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +..++|.|+|+    +..|..+++||...|-+++..+.+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~   46 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE   46 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc
Confidence            56689999996    78899999999876767999997754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.89  E-value=0.28  Score=29.87  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHhCC
Q psy9593          20 ATKILLIGV-EGVGAEIAKNIILSGV   44 (84)
Q Consensus        20 ~~~vlivG~-gg~G~eiak~L~l~Gv   44 (84)
                      .+||+|.|+ |-+|.++++.|...|-
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~   27 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT   27 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC
Confidence            479999995 9999999999998885

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=86.15  E-value=0.41  Score=31.86  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593          22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV   55 (84)
Q Consensus        22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v   55 (84)
                      -++|||.|..|+.+|..|+..  .++.|+.....
T Consensus        28 D~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~   59 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK--YKVLVLERGSL   59 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT--SCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHhcCC--CCEEEEecCCC
Confidence            689999999999999999875  46999987754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.05  E-value=0.33  Score=29.05  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      ..+|+|.| +|++|...+..+...|...+...++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            36788888 6999999999999999987766654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=85.85  E-value=0.4  Score=29.04  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             cCcEEEEcCChhHHHH-HHHHHHhCCCcEEEE
Q psy9593          20 ATKILLIGVEGVGAEI-AKNIILSGVKSVCLL   50 (84)
Q Consensus        20 ~~~vlivG~gg~G~ei-ak~L~l~Gv~~i~l~   50 (84)
                      +.||.|+|+|++|.+. .+.|-.....++..+
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~av   35 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAM   35 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEE
Confidence            4689999999999975 466654555556655

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.41  E-value=0.45  Score=28.61  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=24.9

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      ...+|+|.| +|++|...+..+...|..-+.+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~   59 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAA   59 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccc
Confidence            445688889 59999999999889999644444

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=0.76  Score=24.77  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593          19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      +..+|+|.| .|++|+.....+...|..-+...
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t   63 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVS   63 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEE
Confidence            567799987 69999999999899999644443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=84.56  E-value=0.53  Score=28.43  Aligned_cols=37  Identities=8%  Similarity=0.050  Sum_probs=25.4

Q ss_pred             hcCcEEEEcCChhHHH-HHHHHHHhC-CCcEE-EEeCCcc
Q psy9593          19 RATKILLIGVEGVGAE-IAKNIILSG-VKSVC-LLDSGVV   55 (84)
Q Consensus        19 ~~~~vlivG~gg~G~e-iak~L~l~G-v~~i~-l~D~d~v   55 (84)
                      ++.||.|||+|..|.. .+..+...+ .-+++ ++|.+.-
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~   41 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRS   41 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHH
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHh
Confidence            4568999999999987 477776533 22344 6677653

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.39  E-value=0.65  Score=30.65  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             CcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeC
Q psy9593          21 TKILLIGVE---GVGAEIAKNIILSGVKSVCLLDS   52 (84)
Q Consensus        21 ~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~   52 (84)
                      +-.+|-|+|   |+|-.+++.|+..|.. +.+.+.
T Consensus         3 kVAlITGaa~s~GIG~aiA~~la~~GA~-V~i~~~   36 (329)
T d1uh5a_           3 DICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIW   36 (329)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             cEEEEeCCCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence            345566865   8999999999999996 777653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=0.69  Score=26.72  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593          16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      ...++++|+|+|.|-.+.+-|..|+.. .++++++
T Consensus        26 ~~~~gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li   59 (126)
T d1fl2a2          26 PLFKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLL   59 (126)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTT-BSEEEEE
T ss_pred             hhcCCceEEEEeCCHHHHHHHHhhhcc-CCceEEE
Confidence            357899999999999999999999877 6689998

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.21  E-value=0.39  Score=30.55  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=25.3

Q ss_pred             hhcCcEEEEc-CChhHHHHHHHHHH---hCCCcEEEEeCCc
Q psy9593          18 LRATKILLIG-VEGVGAEIAKNIIL---SGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG-~gg~G~eiak~L~l---~Gv~~i~l~D~d~   54 (84)
                      |+.+.++|-| .+|+|.++++.|++   .|. ++.++|.+.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~   43 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE   43 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCH
Confidence            3444445547 67999999999986   455 588887643

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.12  E-value=0.92  Score=25.32  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=24.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593          21 TKILLIGVEGVGAEIAKNIILSGVKSVCLL   50 (84)
Q Consensus        21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~   50 (84)
                      .||||+|.||--..+++.|..+. .++.++
T Consensus         1 MkVLviGsGgREHAia~~l~~s~-~~v~~~   29 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQG-YEVHFY   29 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC-CeEEEe
Confidence            48999999999999999999876 456665

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.57  Score=30.57  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      +++++||-+|||. | .++..++.+|..+++-+|...
T Consensus        34 ~~~~~VLDiGcG~-G-~lsl~aa~~Ga~~V~aid~s~   68 (311)
T d2fyta1          34 FKDKVVLDVGCGT-G-ILSMFAAKAGAKKVLGVDQSE   68 (311)
T ss_dssp             TTTCEEEEETCTT-S-HHHHHHHHTTCSEEEEEESST
T ss_pred             CCcCEEEEECCCC-C-HHHHHHHHcCCCEEEEEeCHH
Confidence            4678999999993 2 245567789999999998754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.53  E-value=2.4  Score=24.90  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             HHHHHHh-hcCcEEEEcCC----hhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          12 LPYQSRL-RATKILLIGVE----GVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        12 ~~~q~~l-~~~~vlivG~g----g~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .+-.+-| +.++|.|+|++    ..|..++++|...|. ++..+.+..
T Consensus        10 ~~i~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-~v~pVnP~~   56 (139)
T d2d59a1          10 EDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGY-DVYPVNPKY   56 (139)
T ss_dssp             HHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             HHHHHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCCC-EEEEECCcc
Confidence            3334445 56789999965    689999999999999 599987753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.46  E-value=0.94  Score=24.94  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=26.5

Q ss_pred             cCcEEEEcCChhHH-HHHHHHHHhCCCcEEEEeCC
Q psy9593          20 ATKILLIGVEGVGA-EIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        20 ~~~vlivG~gg~G~-eiak~L~l~Gv~~i~l~D~d   53 (84)
                      +.||-++|.||+|- .+|+.|...|. .++-.|..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~   34 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIE   34 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            46899999999886 67888999998 47777754

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.33  E-value=0.4  Score=29.13  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH
Q psy9593          20 ATKILLIGVEGVGAEIAKNIIL   41 (84)
Q Consensus        20 ~~~vlivG~gg~G~eiak~L~l   41 (84)
                      .-+|.++|+|.+|+.+++.|..
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCHHHHHHHHHHHH
Confidence            3479999999999999999875

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.86  E-value=0.77  Score=29.78  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             CcEEEE-c-CChhHHHHHHHHHHhCCCcE
Q psy9593          21 TKILLI-G-VEGVGAEIAKNIILSGVKSV   47 (84)
Q Consensus        21 ~~vliv-G-~gg~G~eiak~L~l~Gv~~i   47 (84)
                      +||++| | .+|+|-++++.|+..|..-+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~   30 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSF   30 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeE
Confidence            466666 6 89999999999999998633

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=0.51  Score=27.93  Aligned_cols=35  Identities=9%  Similarity=0.086  Sum_probs=24.8

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHh-CCCcEEEEeCCcc
Q psy9593          21 TKILLIGVEGVGAE-IAKNIILS-GVKSVCLLDSGVV   55 (84)
Q Consensus        21 ~~vlivG~gg~G~e-iak~L~l~-Gv~~i~l~D~d~v   55 (84)
                      .||.|+|+|..|.. .+..|... ++.-+.++|.+.-
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~   38 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA   38 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhH
Confidence            48999999999986 46666643 5554567777543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.26  E-value=0.74  Score=28.47  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=33.4

Q ss_pred             HhhcCcEEEEcCC-hhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593          17 RLRATKILLIGVE-GVGAEIAKNIILSGVKSVCLLDSGVVTK   57 (84)
Q Consensus        17 ~l~~~~vlivG~g-g~G~eiak~L~l~Gv~~i~l~D~d~v~~   57 (84)
                      .++.++|+|+|.+ -+|-.++..|...|. .+++++.++.+.
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l   76 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL   76 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH
Confidence            5788999999965 599999999999987 488988876653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.34  E-value=0.69  Score=29.38  Aligned_cols=31  Identities=16%  Similarity=0.099  Sum_probs=25.7

Q ss_pred             cEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593          22 KILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG   53 (84)
Q Consensus        22 ~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d   53 (84)
                      .++|-| .+|+|.++++.|+..|. ++.+.|.+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~   33 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDES   33 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467777 77899999999999998 58887754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.05  E-value=1.7  Score=25.27  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593          21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV   54 (84)
Q Consensus        21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~   54 (84)
                      .||.|+|+ |-.|.++++.+...|..-+..+|.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~   35 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG   35 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc
Confidence            37999996 99999999988888776555556544