Psyllid ID: psy9606

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MYLKKDQKKGSSTQSYRNSLNRQEDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNAKRELSGGESPGYAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFTRANDARRTPNVGNVEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAGELAR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEccccccccccEEcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mylkkdqkkgsstqSYRNSlnrqednqhsssnqlSETQLQQHHQAVLEDLrrddrhrqdrqsneqqiipkradltctncntkvttiwrrypsgemvcnacglyyrlhcrprpvsmrrdnihprkrrpknakrelsggespgyafggaTRRAKWCATRAAstiastvdrvpcpcdattftrandarrtpnvgnvehshhhshhhhdsgdnkslssgdesssisLHSFISaslhhapfnvgapggnsppshyalnlsplcednlplnlaagppaehshhhshhhhdsgdnkslssgdesssisLHSFISaslhhapfnvgapggnsppshyalnlsplcednlplnlaagppagelar
Flexible Loop (DISEMBL)
mylkkdqkkgsstqsyrnslnrqeDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRhrqdrqsneqqiipkradltctncntkvttiwrrypsgeMVCNACGLYYRlhcrprpvsmrrdnihprkrrpknakrelsggespgyafggATRRAKWCATRAAstiastvdrvpcpcdattftrandarrtPNVGNVEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAGELAR
Low Complexity Region (SEG)
MYLKKDQKKGSSTQSYRNSLNRQEDNQHSSSNQLSETQLQQHHQAVLEdlrrddrhrqdrqSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNAKRELSGGESPGYAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFTRANDARRTPNVGNVEhshhhshhhhDSGDNKslssgdesssislhsfisaslhhaPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAEhshhhshhhhDSGDNKslssgdesssislhsfisaslhhaPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAGELAR
Disordered region (IsUnstruct)
*********************************************************************KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR********************************YAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFT*********************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************************************TNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRP************************************************************************************************************************************************************************************************HSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGP*******
Disordered Region (DISEMBL)
********************************************AVLEDLRR************QQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHP**************GESPGYAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFTRANDARRTPNVGN*****************************SLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAG*******************************SLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAGELAR
Disordered Region (DISPRO)
***************YR*SLNRQEDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVS*RR******************************************************************************************************************************************PLCEDNLPLNLAAG***********************************************V**PGGNSPPSHYALNLSPLCEDNLPLNLAAGP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLKKDQKKGSSTQSYRNSLNRQEDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNAKRELSGGESPGYAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFTRANDARRTPNVGNVEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNVGAPGGNSPPSHYALNLSPLCEDNLPLNLAAGPPAGELAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
P52172	1264	Box A-binding factor OS=D	yes	N/A	0.165	0.046	0.627	6e-19
P46152	440	Transcription factor GATA	yes	N/A	0.185	0.15	0.513	6e-17
P43695	390	GATA-binding factor 5-A O	N/A	N/A	0.196	0.179	0.563	7e-17
Q0Q0E4	442	Transcription factor GATA	yes	N/A	0.193	0.156	0.527	8e-17
P43696	388	GATA-binding factor 5-B O	N/A	N/A	0.196	0.180	0.563	9e-17
P52168	540	GATA-binding factor A OS=	no	N/A	0.148	0.098	0.610	9e-17
P43694	442	Transcription factor GATA	yes	N/A	0.160	0.128	0.555	1e-16
Q08369	440	Transcription factor GATA	yes	N/A	0.160	0.129	0.555	2e-16
Q92908	595	Transcription factor GATA	no	N/A	0.191	0.114	0.514	3e-16
P43691	380	Transcription factor GATA	yes	N/A	0.176	0.165	0.555	3e-16

>sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogaster GN=srp PE=1 SV=2

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128
           KRA L+C+NC+T  T++WRR P+GE VCNACGLYY+LH  PRP++M++D I  RKR+PK
Sbjct: 797 KRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPK 855

May function as a transcriptional activator protein and may play a key role in the organogenesis of the fat body. Binds a sequence element (5'-[TA]GATAA-3') found in the larval promoters of all known alcohol dehydrogenase (ADH) genes. Acts as a homeotic gene downstream of the terminal gap gene HKB to promote morphogenesis and differentiation of anterior and posterior midgut.
Drosophila melanogaster (taxid: 7227)

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus GN=Gata4 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct: 264 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 323

Query: 130 AKRELSGGESPG 141
             +  +    PG
Sbjct: 324 LNKSKTPAGPPG 335

Transcriptional activator. Binds to the upstream sequence of the H(+)/K(+)-ATPase beta gene and to a sequence containing the GATA motif. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Rattus norvegicus (taxid: 10116)

>sp|P43695|GAT5A_XENLA GATA-binding factor 5-A OS=Xenopus laevis GN=gata5-a PE=2 SV=1

 Score = 88.6 bits (218), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +RA L CTNC+T  TT+WRR   GE VCNACGLY +LH  PRP++M++++I  RKR+PKN
Sbjct: 231 RRAGLCCTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKN 290

Query: 130 -AKRELSGGES 139
             K + S G S
Sbjct: 291 IGKGKTSTGSS 301

Xenopus laevis (taxid: 8355)

>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis familiaris GN=GATA4 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 5/74 (6%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct: 265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324

Query: 130 AKREL-----SGGE 138
             +       SGGE
Sbjct: 325 LNKSKTPAGPSGGE 338

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Canis familiaris (taxid: 9615)

>sp|P43696|GAT5B_XENLA GATA-binding factor 5-B OS=Xenopus laevis GN=gata5-b PE=2 SV=1

 Score = 88.2 bits (217), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +RA L CTNC+T  TT+WRR   GE VCNACGLY +LH  PRP++M++++I  RKR+PKN
Sbjct: 232 RRAGLCCTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKN 291

Query: 130 -AKRELSGGES 139
             K + S G S
Sbjct: 292 IGKGKTSTGSS 302

Xenopus laevis (taxid: 8355)

>sp|P52168|PNR_DROME GATA-binding factor A OS=Drosophila melanogaster GN=pnr PE=1 SV=1

 Score = 88.2 bits (217), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128
           +R  L CTNC T+ TT+WRR   GE VCNACGLYY+LH   RP++MR+D I  RKR+PK
Sbjct: 220 RRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPK 278

Transcriptional regulator involved in several developmental processes during embryonic and imaginal disks development. Involved in determining dorsal cell fate. Acts as an essential transcriptional regulator of proneural achaete-scute complex (AS-C) and is required for its spatial regulation during development of the adult peripheral nervous system, and hence for the positioning of neural precursors. It is the only factor to directly activate AS-C genes.

Drosophila melanogaster (taxid: 7227)

>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens GN=GATA4 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct: 265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324

Query: 130 AKR 132
             +
Sbjct: 325 LNK 327

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5 (By similarity). Promotes cardiac myocyte enlargement.

Homo sapiens (taxid: 9606)

>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus GN=Gata4 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct: 264 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 323

Query: 130 AKR 132
             +
Sbjct: 324 LNK 326

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Regulates the expression of the HSP47/J6 gene in F9 cells. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Mus musculus (taxid: 10090)

>sp|Q92908|GATA6_HUMAN Transcription factor GATA-6 OS=Homo sapiens GN=GATA6 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 2/70 (2%)

Query: 65  QQIIP--KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHP 122
           Q+ +P  +R  L+C NC+T  TT+WRR   GE VCNACGLY +LH  PRP++M+++ I  
Sbjct: 431 QKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQT 490

Query: 123 RKRRPKNAKR 132
           RKR+PKN  +
Sbjct: 491 RKRKPKNINK 500

Transcriptional activator that regulates SEMA3C and PLXNA2. Thought to be important for regulating terminal differentiation and/or proliferation.

Homo sapiens (taxid: 9606)

>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=Gallus gallus GN=GATA4 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +R  L+C NC+T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct: 205 RRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 264

Query: 130 AKR 132
             +
Sbjct: 265 LNK 267

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
307172112	595	GATA-binding factor A [Camponotus florid	0.219	0.131	0.592	5e-21
332023110	595	GATA-binding factor A [Acromyrmex echina	0.219	0.131	0.580	1e-20
380022377	588	PREDICTED: uncharacterized protein LOC10	0.179	0.108	0.671	3e-19
328785124	588	PREDICTED: hypothetical protein LOC72442	0.179	0.108	0.671	3e-19
322789591	547	hypothetical protein SINV_01115 [Solenop	0.179	0.117	0.656	3e-19
383865617	586	PREDICTED: uncharacterized protein LOC10	0.339	0.206	0.406	5e-19
345486907	647	PREDICTED: hypothetical protein LOC10067	0.174	0.095	0.677	5e-19
350398203	588	PREDICTED: hypothetical protein LOC10074	0.179	0.108	0.656	8e-19
340724648	588	PREDICTED: hypothetical protein LOC10064	0.179	0.108	0.656	8e-19
307197634	594	GATA-binding factor A [Harpegnathos salt	0.219	0.131	0.560	9e-19

>gi|307172112|gb|EFN63680.1| GATA-binding factor A [Camponotus floridanus]

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 3/81 (3%)

Query: 51  RRDDRHRQDRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRP 110
           + DD+ + D+QS     I K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   
Sbjct: 402 KMDDQKQFDQQSGN---IAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVN 458

Query: 111 RPVSMRRDNIHPRKRRPKNAK 131
           RPV+MRRD IH R+RRPK  K
Sbjct: 459 RPVTMRRDTIHTRRRRPKGEK 479

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023110|gb|EGI63371.1| GATA-binding factor A [Acromyrmex echinatior]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 58/81 (71%), Gaps = 3/81 (3%)

Query: 51  RRDDRHRQDRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRP 110
           + DD+ + D+QS     + K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   
Sbjct: 403 KMDDQKQFDQQSGN---VAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVN 459

Query: 111 RPVSMRRDNIHPRKRRPKNAK 131
           RPV+MRRD IH R+RRPK  K
Sbjct: 460 RPVTMRRDTIHTRRRRPKGEK 480

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022377|ref|XP_003695026.1| PREDICTED: uncharacterized protein LOC100864759 [Apis florea]

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 49/64 (76%)

Query: 68  IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRP 127
           I K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRP
Sbjct: 409 ITKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRP 468

Query: 128 KNAK 131
           K  K
Sbjct: 469 KGEK 472

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785124|ref|XP_001120276.2| PREDICTED: hypothetical protein LOC724420 [Apis mellifera]

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 49/64 (76%)

Query: 68  IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRP 127
           I K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRP
Sbjct: 409 IAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRP 468

Query: 128 KNAK 131
           K  K
Sbjct: 469 KGEK 472

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789591|gb|EFZ14817.1| hypothetical protein SINV_01115 [Solenopsis invicta]

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 68  IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRP 127
           + K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRP
Sbjct: 371 VAKKIDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRP 430

Query: 128 KNAK 131
           K  K
Sbjct: 431 KGEK 434

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865617|ref|XP_003708269.1| PREDICTED: uncharacterized protein LOC100877935 [Megachile rotundata]

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 12/133 (9%)

Query: 3   LKKDQKKGSSTQSY--RNSLNRQEDNQHSSSNQLSE--TQLQQHHQAVLEDLRRDDRHRQ 58
           + + + KG   QSY  +  ++   + QH S+ + ++  T      +  +ED ++ D+H  
Sbjct: 346 IGRKETKGRRKQSYPSKAPMSPDINYQHESNEEQAQDFTTWSSKMKVKVEDSKQFDQHPA 405

Query: 59  DRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRD 118
           +        + K+ D++CTNC T  TTIWRR   GE+VCNACGLYY+LH   RPV+MRRD
Sbjct: 406 N--------MAKKVDMSCTNCGTMTTTIWRRNMKGEIVCNACGLYYKLHGVNRPVTMRRD 457

Query: 119 NIHPRKRRPKNAK 131
            IH R+RRPK  K
Sbjct: 458 TIHTRRRRPKGEK 470

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486907|ref|XP_003425585.1| PREDICTED: hypothetical protein LOC100678172 [Nasonia vitripennis]

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 48/62 (77%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRPK 
Sbjct: 460 KKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVAMRRDTIHTRRRRPKG 519

Query: 130 AK 131
            K
Sbjct: 520 EK 521

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398203|ref|XP_003485118.1| PREDICTED: hypothetical protein LOC100747914 [Bombus impatiens]

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 68  IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRP 127
           + K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRP
Sbjct: 409 MAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRP 468

Query: 128 KNAK 131
           K  K
Sbjct: 469 KGEK 472

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724648|ref|XP_003400693.1| PREDICTED: hypothetical protein LOC100646437 [Bombus terrestris]

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 68  IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRP 127
           + K+ D++CTNC T  TTIWRR   GEMVCNACGLYY+LH   RPV+MRRD IH R+RRP
Sbjct: 409 MAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRP 468

Query: 128 KNAK 131
           K  K
Sbjct: 469 KGEK 472

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197634|gb|EFN78813.1| GATA-binding factor A [Harpegnathos saltator]

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 4/82 (4%)

Query: 51  RRDDRHRQ-DRQSNEQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109
           + D++ +Q D+QS+    + K+ ++TC+NC T  TTIWRR   GEMVCNACGLYY+LH  
Sbjct: 399 KMDEQKQQFDQQSSN---VTKKVEMTCSNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGI 455

Query: 110 PRPVSMRRDNIHPRKRRPKNAK 131
            RPV+MRRD IH R+RRPK  K
Sbjct: 456 NRPVTMRRDTIHTRRRRPKGEK 477

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
UNIPROTKB|Q3SZJ5	403	GATA5 "Transcription factor GA	0.196	0.173	0.577	8.8e-21
FB|FBgn0003507	1264	srp "serpent" [Drosophila mela	0.196	0.055	0.585	1.2e-20
UNIPROTKB|B3KUF4	236	GATA4 "cDNA FLJ39741 fis, clon	0.25	0.377	0.458	3.6e-20
UNIPROTKB|F1RIZ4	424	GATA5 "Uncharacterized protein	0.196	0.165	0.563	6.3e-20
UNIPROTKB|Q0Q0E4	442	GATA4 "Transcription factor GA	0.258	0.208	0.437	3.3e-19
ZFIN|ZDB-GENE-980526-340	383	gata5 "GATA-binding protein 5"	0.323	0.300	0.420	5.1e-19
UNIPROTKB|I3LUZ9	442	GATA4 "Uncharacterized protein	0.196	0.158	0.549	5.5e-19
UNIPROTKB|P43694	442	GATA4 "Transcription factor GA	0.25	0.201	0.458	7.1e-19
UNIPROTKB|B7ZKZ4	443	GATA4 "Transcription factor GA	0.25	0.200	0.458	7.2e-19
FB|FBgn0032223	842	GATAd "GATAd" [Drosophila mela	0.182	0.077	0.621	2e-18

UNIPROTKB|Q3SZJ5 GATA5 "Transcription factor GATA-5" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
 Identities = 41/71 (57%), Positives = 53/71 (74%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +RA L CTNC+T  TT+WRR   GE VCNACGLY +LH  PRP++M++++I  RKR+PKN
Sbjct:   242 RRAGLCCTNCHTTTTTLWRRNVDGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKN 301

Query:   130 -AKRELSGGES 139
              AK + S G S
Sbjct:   302 IAKTKGSSGSS 312

GO:0005634 "nucleus" evidence=IEA

GO:0071773 "cellular response to BMP stimulus" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0003507 srp "serpent" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 41/70 (58%), Positives = 54/70 (77%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             KRA L+C+NC+T  T++WRR P+GE VCNACGLYY+LH  PRP++M++D I  RKR+PK 
Sbjct:   797 KRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKG 856

Query:   130 AKRELSGGES 139
              K E S  +S
Sbjct:   857 TKSEKSKSKS 866

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007503 "fat body development" evidence=IEP;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0003677 "DNA binding" evidence=IDA;TAS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0007390 "germ-band shortening" evidence=IMP;TAS

GO:0046665 "amnioserosa maintenance" evidence=IMP;TAS

GO:0008258 "head involution" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;NAS

GO:0030097 "hemopoiesis" evidence=IEP;IMP;TAS

GO:0008354 "germ cell migration" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=NAS

GO:0007494 "midgut development" evidence=TAS

GO:0007492 "endoderm development" evidence=TAS

GO:0001709 "cell fate determination" evidence=TAS

GO:0035162 "embryonic hemopoiesis" evidence=IMP;TAS

GO:0007516 "hemocyte development" evidence=IMP;NAS;TAS

GO:0006952 "defense response" evidence=NAS

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=NAS

GO:0001710 "mesodermal cell fate commitment" evidence=IMP

GO:0045165 "cell fate commitment" evidence=TAS

GO:0001706 "endoderm formation" evidence=TAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042690 "negative regulation of crystal cell differentiation" evidence=TAS

GO:0035167 "larval lymph gland hemopoiesis" evidence=IMP;TAS

GO:0042688 "crystal cell differentiation" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0048542 "lymph gland development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

UNIPROTKB|B3KUF4 GATA4 "cDNA FLJ39741 fis, clone SMINT2016544, highly similar to TRANSCRIPTION FACTOR GATA-4" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 44/96 (45%), Positives = 59/96 (61%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct:    59 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 118

Query:   130 AKREL-----SGGESPGYAFGGATRRAKWCATRAAS 160
               +       SG ES   A G ++  +   AT ++S
Sbjct:   119 LNKSKTPAAPSGSESLPPASGASSNSSN--ATTSSS 152

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0051525 "NFAT protein binding" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0061049 "cell growth involved in cardiac muscle cell development" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

UNIPROTKB|F1RIZ4 GATA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
 Identities = 40/71 (56%), Positives = 52/71 (73%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +RA L CTNC T  TT+WRR   GE VCNACGLY +LH  PRP++M++++I  RKR+PK+
Sbjct:   263 RRAGLCCTNCRTTNTTLWRRNADGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKS 322

Query:   130 -AKRELSGGES 139
              AK + S G S
Sbjct:   323 VAKTKGSSGSS 333

GO:0071773 "cellular response to BMP stimulus" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0Q0E4 GATA4 "Transcription factor GATA-4" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 42/96 (43%), Positives = 60/96 (62%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct:   265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324

Query:   130 AKRELSGGESPGYAFGGATRRAKWCATRAASTIAST 165
                 L+  ++P    GG +      A+  +S +A++
Sbjct:   325 ----LNKSKTPAGPSGGESLPPASSASSNSSNVATS 356

GO:0005634 "nucleus" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003290 "atrial septum secundum morphogenesis" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-980526-340 gata5 "GATA-binding protein 5" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 50/119 (42%), Positives = 64/119 (53%)

Query:    66 QIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKR 125
             Q   +RA L CTNC+T  TT+WRR   GE VCNACGLY +LH  PRP++M++++I  RKR
Sbjct:   231 QSTSRRAGLCCTNCHTSTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKR 290

Query:   126 RPKNAKRELSGGESPGYAFGGATRRAKWCATRAASTIASTVDRVPCPCDATTFTRANDA 184
             +PK  K + S G +      GAT       +  ASTI S       P    T      A
Sbjct:   291 KPKMPKTKSSSGST----VSGATSPTSLPVSENASTIKSEPSIAASPYAGQTVVSVTQA 345

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0007507 "heart development" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IGI;IMP

GO:0060975 "cardioblast migration to the midline involved in heart field formation" evidence=IGI

GO:0030099 "myeloid cell differentiation" evidence=IGI

GO:0031016 "pancreas development" evidence=IMP

GO:0001706 "endoderm formation" evidence=IGI;IMP

GO:0001889 "liver development" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0030878 "thyroid gland development" evidence=IMP

GO:0048618 "post-embryonic foregut morphogenesis" evidence=IMP

GO:0060972 "left/right pattern formation" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007492 "endoderm development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0055007 "cardiac muscle cell differentiation" evidence=IGI

UNIPROTKB|I3LUZ9 GATA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
 Identities = 39/71 (54%), Positives = 49/71 (69%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct:   265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324

Query:   130 A-KRELSGGES 139
               K + S G S
Sbjct:   325 LNKSKTSAGPS 335

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003290 "atrial septum secundum morphogenesis" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P43694 GATA4 "Transcription factor GATA-4" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
 Identities = 44/96 (45%), Positives = 59/96 (61%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct:   265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324

Query:   130 AKREL-----SGGESPGYAFGGATRRAKWCATRAAS 160
               +       SG ES   A G ++  +   AT ++S
Sbjct:   325 LNKSKTPAAPSGSESLPPASGASSNSSN--ATTSSS 358

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0051525 "NFAT protein binding" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0061049 "cell growth involved in cardiac muscle cell development" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0008584 "male gonad development" evidence=IEP

GO:0055007 "cardiac muscle cell differentiation" evidence=IEP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0048617 "embryonic foregut morphogenesis" evidence=ISS

GO:0010575 "positive regulation vascular endothelial growth factor production" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0060413 "atrial septum morphogenesis" evidence=IMP

GO:0001947 "heart looping" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0003197 "endocardial cushion development" evidence=ISS;IMP

GO:0070410 "co-SMAD binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS;IDA

GO:0001076 "RNA polymerase II transcription factor binding transcription factor activity" evidence=IDA

GO:0007492 "endoderm development" evidence=TAS

GO:0003290 "atrial septum secundum morphogenesis" evidence=IMP

GO:0003208 "cardiac ventricle morphogenesis" evidence=TAS

GO:0042493 "response to drug" evidence=IMP

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0003289 "atrial septum primum morphogenesis" evidence=ISS

GO:0051891 "positive regulation of cardioblast differentiation" evidence=ISS

GO:0033613 "activating transcription factor binding" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|B7ZKZ4 GATA4 "Transcription factor GATA-4" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
 Identities = 44/96 (45%), Positives = 59/96 (61%)

Query:    70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
             +R  L+C NC T  TT+WRR   GE VCNACGLY +LH  PRP++MR++ I  RKR+PKN
Sbjct:   266 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 325

Query:   130 AKREL-----SGGESPGYAFGGATRRAKWCATRAAS 160
               +       SG ES   A G ++  +   AT ++S
Sbjct:   326 LNKSKTPAAPSGSESLPPASGASSNSSN--ATTSSS 359

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

FB|FBgn0032223 GATAd "GATAd" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query:    68 IP-KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR 126
             IP  + D++C+NC T  TTIWRR   GEMVCNACGLY++LH   RP SMRRD IH R+RR
Sbjct:   683 IPGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRR 742

Query:   127 PKNAKR 132
             PK  +R
Sbjct:   743 PKELER 748

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	356
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	2e-14
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	4e-11
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-10

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 75  TCTNCNTKVTTIWRRYPS-GEMVCNACGLYYRLHCRPRPVSMRR-DNIHPRKRR 126
            C+NC T  T +WRR PS G  +CNACGLY++ H   RP+S R+ D I  R R+
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRNRK 54

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 71  RADLTCTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLHCRP-RPVSMRRD 118
            +  +C+NC T  T +WRR PSG   +CNACGLYY+ H    RP+S+++D
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD 50

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 76  CTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLH 107
           C+NC T  T +WRR P G   +CNACGLYYR H
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKH 33

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.56
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.48
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.34
KOG1601|consensus	340		98.75
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.75
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	91.62
KOG3554|consensus	693		85.26

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.56  E-value=1.7e-15  Score=113.49  Aligned_cols=50  Identities=52%  Similarity=1.089  Sum_probs=43.4

Q ss_pred             ccccCCCCCCcceeeCCCC-CcccchhhHHHHHhCCCCCCcccc-CCCCCCC
Q psy9606          75 TCTNCNTKVTTIWRRYPSG-EMVCNACGLYYRLHCRPRPVSMRR-DNIHPRK  124 (356)
Q Consensus        75 ~CsnCgTt~TP~WRRgp~G-~~LCNACGL~~k~~g~~RP~slkk-~~i~kRk  124 (356)
                      .|+||++++||+||+++.| .+|||||||||++++..||..++. ..++.++
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~~~~~~~~~   52 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN   52 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCccccccccc
Confidence            5999999999999999965 689999999999999999999877 4444443

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.48  E-value=2.4e-14  Score=106.32  Aligned_cols=47  Identities=51%  Similarity=1.128  Sum_probs=42.3

Q ss_pred             CCcccccCCCCCCcceeeCCCCC-cccchhhHHHHHhCCC-CCCccccC
Q psy9606          72 ADLTCTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLHCRP-RPVSMRRD  118 (356)
Q Consensus        72 ~~~~CsnCgTt~TP~WRRgp~G~-~LCNACGL~~k~~g~~-RP~slkk~  118 (356)
                      ....|+||++++||+||+++.|. +|||||||||+++++. ||..+++.
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~   50 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD   50 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCccccccc
Confidence            35789999999999999999997 9999999999999988 88876554

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.34  E-value=3.5e-13  Score=93.39  Aligned_cols=35  Identities=51%  Similarity=1.122  Sum_probs=28.2

Q ss_pred             cccCCCCCCcceeeCCCCCc-ccchhhHHHHHhCCC
Q psy9606          76 CTNCNTKVTTIWRRYPSGEM-VCNACGLYYRLHCRP  110 (356)
Q Consensus        76 CsnCgTt~TP~WRRgp~G~~-LCNACGL~~k~~g~~  110 (356)
                      |++|+|++||+||+++.|.. |||+||||+++++++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            89999999999999999984 999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601|consensus

Probab=98.75  E-value=5.4e-09  Score=90.45  Aligned_cols=52  Identities=42%  Similarity=0.862  Sum_probs=46.9

Q ss_pred             CcccccCCCCCCcceeeCCCC-CcccchhhHHHHHhCCCCCCccccCCCCCCC
Q psy9606          73 DLTCTNCNTKVTTIWRRYPSG-EMVCNACGLYYRLHCRPRPVSMRRDNIHPRK  124 (356)
Q Consensus        73 ~~~CsnCgTt~TP~WRRgp~G-~~LCNACGL~~k~~g~~RP~slkk~~i~kRk  124 (356)
                      ...|.+|++++||+||+++.| +.+||||||+++++++.|++.+++..+.++.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~  251 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRN  251 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccc
Confidence            589999999999999999999 7899999999999988888888877776665

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.75  E-value=3.4e-09  Score=108.94  Aligned_cols=56  Identities=46%  Similarity=1.003  Sum_probs=51.2

Q ss_pred             CCCCcccccCCCCCCcceeeCCC-----CCcccchhhHHHHHhCCCC-CCccccCCCCCCCC
Q psy9606          70 KRADLTCTNCNTKVTTIWRRYPS-----GEMVCNACGLYYRLHCRPR-PVSMRRDNIHPRKR  125 (356)
Q Consensus        70 ~~~~~~CsnCgTt~TP~WRRgp~-----G~~LCNACGL~~k~~g~~R-P~slkk~~i~kRkR  125 (356)
                      ...+.+|.||.|+.||+|||+..     |.+||||||||++.++++| |+.++.+.+++|.+
T Consensus       155 s~~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~~  216 (498)
T COG5641         155 SNQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSS  216 (498)
T ss_pred             ccccchhccccccCCccccccccccccCCccccccccccccccCCcCCCccccccccccccc
Confidence            33455999999999999999999     8899999999999999999 99999999988874

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=91.62  E-value=0.075  Score=55.78  Aligned_cols=54  Identities=26%  Similarity=0.409  Sum_probs=43.2

Q ss_pred             CcccccCCC-CCCcceeeCCC-CCcccchhhHHHHHhCCCCCCccccCCCCCCCCC
Q psy9606          73 DLTCTNCNT-KVTTIWRRYPS-GEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR  126 (356)
Q Consensus        73 ~~~CsnCgT-t~TP~WRRgp~-G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk  126 (356)
                      ...|.+|.+ +.||.|||... .-++||+|+++.+..+.+||+..|-+...+|.+.
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~~~~~  352 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNA  352 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccCCcccccccCCCCChhhhhhhh
Confidence            457888877 78888887754 4689999999999999999998877766555544

>KOG3554|consensus

Probab=85.26  E-value=0.59  Score=49.54  Aligned_cols=38  Identities=21%  Similarity=0.600  Sum_probs=31.4

Q ss_pred             CCcccccCCCCCCcceee-CCCC-C-cccchhhHHHHHhCC
Q psy9606          72 ADLTCTNCNTKVTTIWRR-YPSG-E-MVCNACGLYYRLHCR  109 (356)
Q Consensus        72 ~~~~CsnCgTt~TP~WRR-gp~G-~-~LCNACGL~~k~~g~  109 (356)
                      ..+.|.+|+|+++-.|-. |+-+ + .||-.|-+|||+++.
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            467999999999999864 5555 4 799999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
1gat_A	60	Solution Structure Of The Specific Dna Complex Of T		5e-14
3gat_A	66	Solution Nmr Structure Of The C-Terminal Domain Of		6e-14
3dfv_D	63	Adjacent Gata Dna Binding Length = 63		4e-12
4hc7_A	115	Crystal Structure Of The Full Dna Binding Domain Of		9e-12
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		9e-11
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		1e-10
3vd6_C	119	Both Zn Fingers Of Gata1 Bound To Palindromic Dna R		7e-09
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		8e-08
1gnf_A	46	Solution Structure Of The N-Terminal Zinc Finger Of		2e-04
1y0j_A	46	Zinc Fingers As Protein Recognition Motifs: Structu		2e-04

>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc Containing Dna Binding Domain Of The Erythroid Transcription Factor Gata-1 By Multidimensional Nmr Length = 60

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR 126
           KRA   C+NC T  TT+WRR P G+ VCNACGLYY+LH   RP++MR+D I  R R+
Sbjct: 1   KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRK 57

>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of Chicken Gata-1 Bound To Dna, 34 Structures Length = 66

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR 126
           KRA   C+NC T  TT+WRR P G+ VCNACGLYY+LH   RP++MR+D I  R R+
Sbjct: 1   KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRK 57

>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding Length = 63

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR 126
           +RA  +C NC T  TT+WRR  +G+ VCNACGLYY+LH   RP++M+++ I  R R+
Sbjct: 4   RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60

>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of Gata3-Complex 2 Length = 115

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRR 126
           +RA  +C NC T  TT+WRR  +G+ VCNACGLYY+LH   RP++M+++ I  R R+
Sbjct: 56  RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNA 130
           TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S++ D I  R R   N+
Sbjct: 11  TCTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSANS 66

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNA 130
           TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S++ D I  R R   N+
Sbjct: 11  TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSANS 66

>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna Recognition Site, P21 Crystal Form Length = 119

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 64  EQQIIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPR 123
           ++ I+ KRA   CTNC T  TT+WRR  SG+ VCNACGLY++LH   RP++MR+D I  R
Sbjct: 47  KRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYFKLHQVNRPLTMRKDGIQTR 106
Query: 124 KRRPKNAKRELSG 136
            R+     ++  G
Sbjct: 107 NRKASGKGKKKRG 119

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM 115
           TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S+
Sbjct: 3   TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43

>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine Gata-1, Nmr, 25 Structures Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 76  CTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPV 113
           C NC    T +WRR  +G  +CNACGLY++++ + RP+
Sbjct: 7   CVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPL 44

>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural Basis For The Gata-1FRIEND OF GATA INTERACTION Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 76  CTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPV 113
           C NC    T +WRR  +G  +CNACGLY++++ + RP+
Sbjct: 7   CVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPL 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3dfx_A	63	Trans-acting T-cell-specific transcription factor	6e-21
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-20
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-17
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	8e-17
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-16
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	8e-09

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 84.3 bits (208), Expect = 6e-21
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 69  PKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128
            +RA  +C NC T  TT+WRR  +G+ VCNACGLYY+LH   RP++M+++ I  R R+  
Sbjct: 3   ARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62

Query: 129 N 129
           +
Sbjct: 63  S 63

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           +    TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S++ D I  R R   N
Sbjct: 6   QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSAN 65

Query: 130 A 130
           +
Sbjct: 66  S 66

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 74.5 bits (183), Expect = 2e-17
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128
            +    C+NC+   T  WR   S E + CNAC +Y R + + RPV+        + +  +
Sbjct: 5   NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQE 64

Query: 129 NA 130
             
Sbjct: 65  TN 66

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 72.5 bits (178), Expect = 8e-17
 Identities = 23/42 (54%), Positives = 31/42 (73%)

Query: 74  LTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM 115
            TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S+
Sbjct: 2   TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPV 113
            C NC    T +WRR  +G  +CNACGLY++++ + RP+
Sbjct: 6   ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPL 44

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 57  RQDRQSNEQQIIPK-RADLTCTNCNTKVTTIWRRYPSGEMVCNACGL 102
           R+       +  P     LTC  C      I  R+  G++VC  CGL
Sbjct: 4   RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.82
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.81
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.72
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.7
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.66
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.64
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.45

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.82  E-value=8.3e-21  Score=145.73  Aligned_cols=59  Identities=49%  Similarity=1.070  Sum_probs=52.7

Q ss_pred             CCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606          70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK  128 (356)
Q Consensus        70 ~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K  128 (356)
                      .+....|.+|+|++||+||+|++|.+|||||||||+++++.||+.+++++|++|+|+.+
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~~   62 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS   62 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCccccccCCCC
Confidence            45678999999999999999999999999999999999999999999999999999864

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.81  E-value=1.8e-20  Score=144.89  Aligned_cols=59  Identities=46%  Similarity=0.940  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606          70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK  128 (356)
Q Consensus        70 ~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K  128 (356)
                      ...+..|.+|+|++||+||+|++|.+|||||||||+++++.||+.++++.|++|+|+..
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~~   64 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSA   64 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSCC
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCCC
Confidence            45679999999999999999999999999999999999999999999999999998754

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.72  E-value=2.1e-18  Score=144.92  Aligned_cols=62  Identities=47%  Similarity=1.006  Sum_probs=54.3

Q ss_pred             cCCCCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606          67 IIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK  128 (356)
Q Consensus        67 ~~t~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K  128 (356)
                      .........|++|+|++||+||++++|++|||||||||+++++.||+.|+++.|++|+|+..
T Consensus        53 ~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s  114 (115)
T 4hc9_A           53 SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS  114 (115)
T ss_dssp             CCCCCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred             cccccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence            34456779999999999999999999999999999999999999999999999999999753

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.70  E-value=6.9e-18  Score=120.86  Aligned_cols=43  Identities=53%  Similarity=1.120  Sum_probs=40.3

Q ss_pred             CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCcc
Q psy9606          73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM  115 (356)
Q Consensus        73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~sl  115 (356)
                      +..|.+|++++||+||+|++|.+|||||||||+++++.||++|
T Consensus         1 p~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             -CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             CCcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence            3689999999999999999999999999999999999999875

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.66  E-value=4e-17  Score=118.46  Aligned_cols=43  Identities=40%  Similarity=0.959  Sum_probs=40.7

Q ss_pred             CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCc
Q psy9606          72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVS  114 (356)
Q Consensus        72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~s  114 (356)
                      ....|.+|++++||+||++++|.+|||||||||+++++.||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence            3578999999999999999999999999999999999999985

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.64  E-value=1.8e-17  Score=129.83  Aligned_cols=50  Identities=32%  Similarity=0.687  Sum_probs=43.6

Q ss_pred             CCCcccccCCCCCCcceee--CCCCCcccchhhHHHHHhCCCCCCccccCCCC
Q psy9606          71 RADLTCTNCNTKVTTIWRR--YPSGEMVCNACGLYYRLHCRPRPVSMRRDNIH  121 (356)
Q Consensus        71 ~~~~~CsnCgTt~TP~WRR--gp~G~~LCNACGL~~k~~g~~RP~slkk~~i~  121 (356)
                      .....|.||+|++||+||+  ++.| +|||||||||+++++.||+.++++.++
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~~   57 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQK   57 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhhh
Confidence            3468999999999999999  6667 999999999999999999999887543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.45  E-value=5.6e-14  Score=118.10  Aligned_cols=44  Identities=39%  Similarity=0.926  Sum_probs=39.7

Q ss_pred             CCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCc
Q psy9606          71 RADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVS  114 (356)
Q Consensus        71 ~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~s  114 (356)
                      ...+.|+||+|++||+|||+++|++||||||||++++++.||+.
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~   46 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI   46 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCS
T ss_pred             CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccc
Confidence            35689999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-20
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	4e-15
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	6e-13

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.4 bits (198), Expect = 5e-20
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           KRA   C+NC T  TT+WRR P G+ VCNACGLYY+LH   RP++MR+D I  R R+  +
Sbjct: 1   KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSS 60

Query: 130 AKR 132
             +
Sbjct: 61  KGK 63

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM 115
           TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S+
Sbjct: 2   TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 42

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 76  CTNCNTKVTTIWRRYPSGEMVCNACGLYYRLH 107
           C NC    T +WRR  +G  +CNACGLY++++
Sbjct: 5   CVNCGATATPLWRRDRTGHYLCNACGLYHKMN 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.81
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.75
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.65
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	84.55
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	80.12

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=7e-21  Score=145.58  Aligned_cols=59  Identities=53%  Similarity=1.078  Sum_probs=55.1

Q ss_pred             CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCCcc
Q psy9606          72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKNA  130 (356)
Q Consensus        72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~Kn~  130 (356)
                      ...+|+||+|++||+|||+++|.+|||||||||+++++.||+.+++++|++|+|+....
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~~~   61 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSSK   61 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTSCEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCCCC
T ss_pred             CCCCCCCCCCCCCcccccCCCCCcccchhHHHHHHhCCcCCccccccccccccCCCCCc
Confidence            45789999999999999999999999999999999999999999999999999887654

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.75  E-value=2.2e-19  Score=126.82  Aligned_cols=41  Identities=56%  Similarity=1.191  Sum_probs=39.6

Q ss_pred             ccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCcc
Q psy9606          75 TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM  115 (356)
Q Consensus        75 ~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~sl  115 (356)
                      .|+||+|++||+|||+++|++||||||||||++++.||++|
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCCCCchhhhhHHHHHcCCCCCCCC
Confidence            69999999999999999999999999999999999999975

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.5e-17  Score=114.56  Aligned_cols=38  Identities=39%  Similarity=0.977  Sum_probs=35.6

Q ss_pred             CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCC
Q psy9606          73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRP  110 (356)
Q Consensus        73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~  110 (356)
                      .+.|+||++++||+|||+++|.+|||||||||++++++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCCC
Confidence            47899999999999999999999999999999999863

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.55  E-value=0.24  Score=35.30  Aligned_cols=33  Identities=30%  Similarity=0.742  Sum_probs=23.9

Q ss_pred             CCCCCcccccCCCCCCcceeeCCCCCcccchhhHH
Q psy9606          69 PKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLY  103 (356)
Q Consensus        69 t~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~  103 (356)
                      .......|.+|+.+.  +--....|.++|..||+-
T Consensus         7 ~~~~~~~Cp~Cgs~~--ii~D~~~Ge~vC~~CG~V   39 (58)
T d1dl6a_           7 DALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV   39 (58)
T ss_dssp             CCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred             ccccccCCCCCCCCC--EEEECCCCcEecccCCCE
Confidence            345568999999764  222346789999999983

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.12  E-value=0.22  Score=34.43  Aligned_cols=28  Identities=29%  Similarity=0.736  Sum_probs=21.1

Q ss_pred             CcccccCCCCCCcceeeCCCCCcccchhhH
Q psy9606          73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGL  102 (356)
Q Consensus        73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL  102 (356)
                      ...|.+|+.+.  +-.....|.++|..||+
T Consensus         5 ~~~Cp~Cgs~~--iv~D~~~Ge~vC~~CG~   32 (50)
T d1pfta_           5 QKVCPACESAE--LIYDPERGEIVCAKCGY   32 (50)
T ss_dssp             CCSCTTTSCCC--EEEETTTTEEEESSSCC
T ss_pred             cccCcCCCCCc--EEEECCCCeEecccCCc
Confidence            36899998654  33345678999999997