Psyllid ID: psy9669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEccHHHHHHccccccccccccccccEEEEEccccccccccccEEcccEEEEEEEEccccccEEEcccccEEEccccccccccEEEEcccccccccccccccccEEEEEEEccccEEEEEEcccccEEEEEcccEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEcccccEEEEEEEcccccEEcEEcccccEcccccccccccEEEEEEEcccccccccEcccccEEEEEEEcccccEEEEEcccccEEEEcccEEEEccccc
Coil and Loop (DISEMBL)
mdewtlndllecsvcldrldtsskvlpcqhtfCKKCLEEIVSShkelrcpecptfvpeyiaiypykpqkddelelrrgsvytvtercqdgwfkgtsqrtqrsgvfpgnyvapakfrcivpyppnseyeLELRVGDLIYVhkkrddgwykgtlqrtgrtglfpasfmkqsdffi
Flexible Loop (DISEMBL)
mdewtlndLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYpykpqkddeleLRRGSVYTVtercqdgwfkgtsqrtqrsgVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHkkrddgwykgtlqrtgrtglfpasfmkqsdffi
Low Complexity Region (SEG)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Disordered region (IsUnstruct)
***WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA**********
Disordered Region (DISOPRED)
*****LND***************************************************IAIYPYKP***********************************************FRC*****P****ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Disordered Region (DISEMBL)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Disordered Region (DISPRO)
***WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKC************CPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q6NRD3	826	E3 ubiquitin-protein liga	N/A	N/A	0.947	0.198	0.384	1e-21
Q28E95	861	E3 ubiquitin-protein liga	no	N/A	0.947	0.190	0.384	2e-21
Q7Z6J0	888	E3 ubiquitin-protein liga	yes	N/A	0.947	0.184	0.354	2e-20
A5D7F8	840	E3 ubiquitin-protein liga	no	N/A	0.947	0.195	0.380	2e-20
A5D8S5	867	E3 ubiquitin-protein liga	yes	N/A	0.947	0.189	0.352	3e-20
Q5RBR0	888	E3 ubiquitin-protein liga	yes	N/A	0.947	0.184	0.354	3e-20
Q69ZI1	892	E3 ubiquitin-protein liga	yes	N/A	0.947	0.183	0.354	4e-19
Q8C120	878	SH3 domain-containing RIN	no	N/A	0.173	0.034	0.732	4e-19
Q8TEJ3	882	SH3 domain-containing RIN	no	N/A	0.306	0.060	0.732	4e-19
Q71F54	894	E3 ubiquitin-protein liga	no	N/A	0.953	0.184	0.350	8e-19

>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 95/190 (50%), Gaps = 26/190 (13%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IVSS KELRCPEC T V   +
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRKELRCPECRTLVECGV 60

Query: 61  AIYP-------------YKPQK--------DDELELR-RGSVYTVTERCQDGWFKGTSQR 98
              P              +P+K        +    LR +GSV T          +   QR
Sbjct: 61  DELPSNILLVRLLDGIRQRPRKAGDGGSAGNSTNALRAQGSVTTNGGLNDAQNTQSGQQR 120

Query: 99  TQ-RSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 157
            Q RS    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   G 
Sbjct: 121 IQARSPPVRGVPQLPCA-KALYNYEGKEPGDLKFNKGDIIVLRRQVDENWYHGEIN--GI 177

Query: 158 TGLFPASFMK 167
            G FP +F++
Sbjct: 178 HGFFPTNFVQ 187

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 95/190 (50%), Gaps = 26/190 (13%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IVSS  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPECRTLVECGV 60

Query: 57  ---PEYIAIY------PYKPQK--------DDELELR-RGSVYTVTERCQDGWFKGTSQR 98
              P  I +         +P+K        +    LR +GS+ T           G  QR
Sbjct: 61  DELPSNILLVRLLDGIKQRPRKAGVGGSAGNSTNVLRAQGSLTTNCGLNDAQNIHGGQQR 120

Query: 99  TQ-RSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 157
            Q RS    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   G 
Sbjct: 121 IQARSPPVRGVPQLPCA-KALYNYEGKEPGDLKFNKGDIIVLRRQVDENWYHGEIN--GI 177

Query: 158 TGLFPASFMK 167
            G FP +F++
Sbjct: 178 HGFFPTNFVQ 187

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 91/192 (47%), Gaps = 28/192 (14%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 57  ---PEYIAIY---------PYKPQK--------DDELELRRGSVYTVTERCQDGWFKGTS 96
              P  I +          P+KP           + L  +  +V   + +       G  
Sbjct: 61  EELPSNILLVRLLDGIKQRPWKPGPGGGSGTNCTNALRSQSSTVANCSSKDLQSSQGGQQ 120

Query: 97  QRTQR-SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
            R Q  S    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   
Sbjct: 121 PRVQSWSPPVRGIPQLPCA-KALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVN-- 177

Query: 156 GRTGLFPASFMK 167
           G  G FP +F++
Sbjct: 178 GIHGFFPTNFVQ 189

Plays an essential role in the targeting of HIV-1 Gag to the plasma membrane, this function is dependent on it's RING domain, and hence it's E3 ligase activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 93/192 (48%), Gaps = 28/192 (14%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 57  ---PEYIAIY---------PYKP------QKDDELELRRGSVYTVTERCQDGWFK--GTS 96
              P  I +          P+KP        +    LR  S   VT   +DG     G  
Sbjct: 61  EQLPSNILLVRLLDGIKQRPWKPGPVGGSGTNGTSALRAQSSAVVTCSPKDGPSSQGGPQ 120

Query: 97  QRTQR-SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
            R Q  S    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   
Sbjct: 121 PRAQAWSPPVRGIPQLPCA-KALYNYEGKEPGDLKFSKGDIIVLRRQVDENWYHGEV--G 177

Query: 156 GRTGLFPASFMK 167
           G  G FP +F++
Sbjct: 178 GVHGFFPTNFVQ 189

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 92/190 (48%), Gaps = 26/190 (13%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE  L DLLEC VCL+RLD ++KVLPCQHTFC++CL  IV S  ELRCPEC T V   +
Sbjct: 1   MDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGV 60

Query: 61  AIYPYK---PQKDDELELRRGSVYTVTERCQDGW-------------------FKGTSQR 98
              P      +  D ++ R     +V   C +G                      G SQR
Sbjct: 61  DELPSNILLVRLLDGIKQRPRRTGSVHGTCANGSAVAGVRAQGAGGSQRDPGPTGGQSQR 120

Query: 99  TQ-RSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 157
            Q +S    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   G 
Sbjct: 121 VQAKSTPVRGVPQLPCA-KALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEM--GGV 177

Query: 158 TGLFPASFMK 167
            G FP +F++
Sbjct: 178 HGFFPTNFVQ 187

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 91/192 (47%), Gaps = 28/192 (14%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 57  ---PEYIAIY---------PYKPQK--------DDELELRRGSVYTVTERCQDGWFKGTS 96
              P  I +          P+KP           + L  +  +V   + +       G  
Sbjct: 61  EELPSNILLVRLLDGIKQRPWKPGPGGGSGTNCTNALRSQSSTVANCSSKDLQSSQGGQQ 120

Query: 97  QRTQR-SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
            R Q  S    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +   
Sbjct: 121 PRVQAWSPPVRGIPQLPCA-KALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVN-- 177

Query: 156 GRTGLFPASFMK 167
           G  G FP +F++
Sbjct: 178 GIHGFFPTNFVQ 189

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 91/192 (47%), Gaps = 28/192 (14%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 57  ---PEYIAIY---------PYKPQK--------DDELELRRGSVYTVTERCQDGWFKGTS 96
              P  I +          P+KP           + L  +  +V     +       G  
Sbjct: 61  DELPSNILLVRLLDGIKQRPWKPGPGGGGGTTCTNTLRAQGSTVVNCGSKDLQSSQCGQQ 120

Query: 97  QRTQR-SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
            R Q  S    G    P   + +  Y      +L+   GD+I + ++ D+ WY G +  +
Sbjct: 121 PRVQAWSPPVRGIPQLPCA-KALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEV--S 177

Query: 156 GRTGLFPASFMK 167
           G  G FP +F++
Sbjct: 178 GVHGFFPTNFVQ 189

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus GN=Sh3rf3 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 47/56 (83%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV 56
          MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPEC   V
Sbjct: 41 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILV 96

Mus musculus (taxid: 10090)

>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens GN=SH3RF3 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 47/56 (83%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV 56
           MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPEC   V
Sbjct: 46  MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILV 101

Homo sapiens (taxid: 9606)

>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 88/191 (46%), Gaps = 26/191 (13%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPEC T V    
Sbjct: 1   MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 57  ---PEYIAIY---------PYKPQKDDELE------LRRGSVYTVTERCQDGWFKGTSQR 98
              P  I +          P+KP             LR      V    +D       Q+
Sbjct: 61  DELPSNILLVRLLDGIKQRPWKPGPGGGGSTTCTNVLRAQGSTVVNCGSKDLQSPQCGQQ 120

Query: 99  TQRSGVFPGNYVAPAK--FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG 156
            +     P     P     + +  Y      +L+   GD+I + ++ D+ WY G +   G
Sbjct: 121 PRVQAWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVN--G 178

Query: 157 RTGLFPASFMK 167
             G FP +F++
Sbjct: 179 VHGFFPTNFVQ 189

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
242006001	744	conserved hypothetical protein [Pediculu	0.930	0.216	0.394	1e-27
270006379	779	plenty of SH3s [Tribolium castaneum]	0.890	0.197	0.395	2e-26
189236524	656	PREDICTED: similar to AGAP011487-PA [Tri	0.890	0.234	0.395	2e-26
193695152	827	PREDICTED: putative E3 ubiquitin-protein	0.930	0.194	0.417	1e-25
405963292	784	SH3 domain-containing RING finger protei	0.936	0.206	0.395	2e-25
357624146	800	hypothetical protein KGM_13238 [Danaus p	0.930	0.201	0.412	5e-25
307167911	911	SH3 domain-containing RING finger protei	0.942	0.178	0.379	1e-24
383851892	888	PREDICTED: SH3 domain-containing RING fi	0.913	0.177	0.38	1e-23
307195492	917	SH3 domain-containing RING finger protei	0.751	0.141	0.446	1e-23
383851890	894	PREDICTED: SH3 domain-containing RING fi	0.913	0.176	0.38	1e-23

>gi|242006001|ref|XP_002423847.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507069|gb|EEB11109.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 24/185 (12%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV---- 56
           MDEWTLNDLLECSVCL+RLDTSSK+LPCQHTFCKKCL+EIVS+HKEL+CPEC   V    
Sbjct: 1   MDEWTLNDLLECSVCLERLDTSSKILPCQHTFCKKCLQEIVSTHKELKCPECRILVEAPI 60

Query: 57  ----PEYIAIYPYKPQKDDEL-----ELRRGSVYTVTERCQ-----DGWFKGTSQRTQRS 102
               P  + +   +  K+ EL      L+ G++   T +       +      +Q  ++ 
Sbjct: 61  DELPPNVLLMRILEGMKNSELNKSDSSLKEGNILKSTSQGSNNPSCNNLGNSKTQPVKKQ 120

Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
              P    A    R I  Y      +L  + GD+I ++++ D  W  G  +  G++G+FP
Sbjct: 121 NTLPSQPYA----RAIYTYISKEPEDLCFQKGDIILLNRRVDANWCHG--ECCGKSGIFP 174

Query: 163 ASFMK 167
            S+++
Sbjct: 175 LSYVQ 179

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006379|gb|EFA02827.1| plenty of SH3s [Tribolium castaneum]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 96/187 (51%), Gaps = 33/187 (17%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE TLNDLLECSVCLDRLDTSSKVLPCQHTFC+KCL+EIV  HKELRCPEC   V   +
Sbjct: 1   MDEGTLNDLLECSVCLDRLDTSSKVLPCQHTFCRKCLQEIVHKHKELRCPECRILVNSKV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK------ 114
              P      + L +R      + E  ++       QR  +S   P  +  P        
Sbjct: 61  DDLP-----PNVLLMR------ILEGMKNNAVPKKQQRAPKSIQAPAVHHTPVHQQQKIN 109

Query: 115 --------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL 160
                          + +  Y P    +L  + GD+I + K+ D  WY+G     G+ GL
Sbjct: 110 NNKTSPQLVPHQPYAKALYDYEPKEVGDLSFKRGDVILLRKRIDAHWYQGEC--GGKQGL 167

Query: 161 FPASFMK 167
           FP S+++
Sbjct: 168 FPLSYVQ 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236524|ref|XP_975448.2| PREDICTED: similar to AGAP011487-PA [Tribolium castaneum]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 96/187 (51%), Gaps = 33/187 (17%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE TLNDLLECSVCLDRLDTSSKVLPCQHTFC+KCL+EIV  HKELRCPEC   V   +
Sbjct: 1   MDEGTLNDLLECSVCLDRLDTSSKVLPCQHTFCRKCLQEIVHKHKELRCPECRILVNSKV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK------ 114
              P      + L +R      + E  ++       QR  +S   P  +  P        
Sbjct: 61  DDLP-----PNVLLMR------ILEGMKNNAVPKKQQRAPKSIQAPAVHHTPVHQQQKIN 109

Query: 115 --------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL 160
                          + +  Y P    +L  + GD+I + K+ D  WY+G     G+ GL
Sbjct: 110 NNKTSPQLVPHQPYAKALYDYEPKEVGDLSFKRGDVILLRKRIDAHWYQGEC--GGKQGL 167

Query: 161 FPASFMK 167
           FP S+++
Sbjct: 168 FPLSYVQ 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193695152|ref|XP_001946794.1| PREDICTED: putative E3 ubiquitin-protein ligase SH3RF1-like [Acyrthosiphon pisum]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 96/170 (56%), Gaps = 9/170 (5%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE  LNDLLECSVCL+RL+TSSKVL CQHTFCKKCL+EIV++HKELRCPEC T V   +
Sbjct: 1   MDEKLLNDLLECSVCLERLNTSSKVLSCQHTFCKKCLDEIVATHKELRCPECRTLVDCRV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR---TQRSGVFPGNYVAPAKFRC 117
              P        LE  +    T++   +      + QR   T +   +  N  A    R 
Sbjct: 61  DELPPNVLLMRILEGMKSKNATISPPKKPSAVACSDQRPPKTSKQVPYQRNMFA----RA 116

Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +  Y      +L  + GD+I + +K D  WY+G  +  G  G+FP S+++
Sbjct: 117 LYDYSSKEPGDLSFKKGDMIILRQKVDSNWYQG--EANGVIGIFPLSYVQ 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405963292|gb|EKC28879.1| SH3 domain-containing RING finger protein 3 [Crassostrea gigas]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 5/167 (2%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE +LN+LLECSVCLDRLD +SKVLPCQHTFC++CL+EI  + +ELRCPEC T V   +
Sbjct: 1   MDEQSLNELLECSVCLDRLDHTSKVLPCQHTFCRRCLDEIYGTKRELRCPECRTLVEIPV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVP 120
              P        + L  G     +ER +     G     +       + + P   R +  
Sbjct: 61  EELPSNILL---IRLLEGLKTKNSERTRSPARHGEHGYNESLFSKQSSTLNPPSARALFN 117

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y  + + +L  + GDLI + ++ D+ WY+G L    R G FPAS+++
Sbjct: 118 YEASEQSDLTFKKGDLILLKRQVDENWYQGEL--NSRQGFFPASYVQ 162

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|357624146|gb|EHJ75026.1| hypothetical protein KGM_13238 [Danaus plexippus]

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE  LNDLLECSVCL+RLDTSS+VLPCQHTFC KCL+ IV SHKELRCPEC   V   +
Sbjct: 1   MDEGLLNDLLECSVCLERLDTSSRVLPCQHTFCLKCLKVIVESHKELRCPECRVLVEARV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVP 120
              P        LE  + +    +     G     +    +S     N   P   R +  
Sbjct: 61  EELPPNVLLMRILEGMKNAPRKTSSARNKGTHAQAASVVHQSA--RANRQPPPHGRALYD 118

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +      +L  + G+ I + KK D  WY G  + +GRTG+FP ++
Sbjct: 119 FVSKEPGDLSFKKGETILLQKKLDTFWYHG--ECSGRTGMFPITY 161

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167911|gb|EFN61288.1| SH3 domain-containing RING finger protein 3 [Camponotus floridanus]

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 96/203 (47%), Gaps = 40/203 (19%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE  LNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIVS+H+ELRCPEC   V   +
Sbjct: 1   MDECMLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVSTHRELRCPECRVLVDAKV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF----- 115
              P        LE  R +      +       G +   QR  +F G+ VAPA       
Sbjct: 61  DDLPPNVLLMRILEGMRNAAPKNQAKPALSRSSGGTAAPQR--LFGGHQVAPAPMVTANL 118

Query: 116 -------------------------------RCIVPYPPNSEYELELRVGDLIYVHKKRD 144
                                          R I  Y      +L  + GD++ + KK D
Sbjct: 119 VPAVAIASEPAIRHSNAAAKQVHLHNQQAYGRAIYDYVSKEAGDLSFKKGDIVILRKKID 178

Query: 145 DGWYKGTLQRTGRTGLFPASFMK 167
             WY G  +     G+FP S+++
Sbjct: 179 KNWYFG--ECGNNHGVFPLSYIQ 199

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851892|ref|XP_003701465.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 2 [Megachile rotundata]

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 97/200 (48%), Gaps = 42/200 (21%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE TLNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIV++H+ELRCPEC   V   +
Sbjct: 1   MDECTLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVNTHRELRCPECRVLVDAKV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV---------- 110
              P        LE  R +    T+          SQR     +F G+ +          
Sbjct: 61  DDLPPNVLLMRILEGMRNAAPKSTKSVAKS--NSGSQR-----LFGGHQITSTTSVTTNS 113

Query: 111 APAKF-----------------------RCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
            P  F                       R I  Y      +L  + GD++ + KK D+ W
Sbjct: 114 TPNAFTNEPIRHASATAKQVQLHSQTYGRAIYDYMSKVPGDLSFKKGDIVILRKKIDNNW 173

Query: 148 YKGTLQRTGRTGLFPASFMK 167
           Y G  +     G+FP S+++
Sbjct: 174 YFG--ESANSHGVFPLSYVQ 191

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195492|gb|EFN77378.1| SH3 domain-containing RING finger protein 3 [Harpegnathos saltator]

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/139 (44%), Positives = 83/139 (59%), Gaps = 9/139 (6%)

Query: 29  QHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ 88
           QH  C   ++   +S + L+C E P+     +++     +    +    G+ +  +    
Sbjct: 786 QHRLCPGSVQGHATSSQRLKCKERPSL---QLSVVQRSGESGAMVCPTVGNHHRKSNSLD 842

Query: 89  DGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWY 148
            G  K T Q+  R      +     +FRCIVPYPPNSE+ELELRVGD+IYVHKKRDDGWY
Sbjct: 843 AGMGKQTKQQPSR------DRDRVYRFRCIVPYPPNSEFELELRVGDIIYVHKKRDDGWY 896

Query: 149 KGTLQRTGRTGLFPASFMK 167
           KGT QRTGRTGLFPASF++
Sbjct: 897 KGTQQRTGRTGLFPASFVE 915

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851890|ref|XP_003701464.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 1 [Megachile rotundata]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 97/200 (48%), Gaps = 42/200 (21%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           MDE TLNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIV++H+ELRCPEC   V   +
Sbjct: 1   MDECTLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVNTHRELRCPECRVLVDAKV 60

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV---------- 110
              P        LE  R +    T+          SQR     +F G+ +          
Sbjct: 61  DDLPPNVLLMRILEGMRNAAPKSTKSVAKS--NSGSQR-----LFGGHQITSTTSVTTNS 113

Query: 111 APAKF-----------------------RCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
            P  F                       R I  Y      +L  + GD++ + KK D+ W
Sbjct: 114 TPNAFTNEPIRHASATAKQVQLHSQTYGRAIYDYMSKVPGDLSFKKGDIVILRKKIDNNW 173

Query: 148 YKGTLQRTGRTGLFPASFMK 167
           Y G  +     G+FP S+++
Sbjct: 174 YFG--ESANSHGVFPLSYVQ 191

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|F1PBV0	882	SH3RF3 "Uncharacterized protei	0.312	0.061	0.740	1.5e-59
UNIPROTKB|F1N2S5	844	SH3RF3 "Uncharacterized protei	0.323	0.066	0.75	1.9e-59
UNIPROTKB|F1NYR2	892	SH3RF1 "Uncharacterized protei	0.317	0.061	0.745	2.5e-59
UNIPROTKB|Q8TEJ3	882	SH3RF3 "SH3 domain-containing	0.323	0.063	0.732	2.8e-58
UNIPROTKB|A5D7F8	840	SH3RF1 "E3 ubiquitin-protein l	0.312	0.064	0.722	3.5e-58
UNIPROTKB|F1Q3X8	882	SH3RF1 "Uncharacterized protei	0.312	0.061	0.722	5.6e-58
UNIPROTKB|Q7Z6J0	888	SH3RF1 "E3 ubiquitin-protein l	0.312	0.060	0.722	5.8e-58
MGI|MGI:2444637	878	Sh3rf3 "SH3 domain containing	0.323	0.063	0.732	1.2e-57
MGI|MGI:1913066	892	Sh3rf1 "SH3 domain containing	0.312	0.060	0.703	1.2e-57
RGD|735154	894	Sh3rf1 "SH3 domain containing	0.312	0.060	0.703	1.3e-57

UNIPROTKB|F1PBV0 SH3RF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+A+Y YKPQK+DELELR+G +Y V E+CQDGWFKGTS RT  SGVFPGNYV P
Sbjct:   465 YLALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGTSLRTGLSGVFPGNYVTP 518

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N2S5 SH3RF3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 1.9e-59, Sum P(3) = 1.9e-59
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV 56
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IVSS +ELRCPEC   V
Sbjct:    30 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVSSRRELRCPECRILV 85

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NYR2 SH3RF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 2.5e-59, Sum P(3) = 2.5e-59
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
             YIAIYPY P+K+DELELR+G ++ V ERCQDGWFKGTS  T + GVFPGNYVAPA
Sbjct:   463 YIAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAPA 517

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q8TEJ3 SH3RF3 "SH3 domain-containing RING finger protein 3" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 2.8e-58, Sum P(3) = 2.8e-58
 Identities = 41/56 (73%), Positives = 47/56 (83%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV 56
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPEC   V
Sbjct:    46 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILV 101

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A5D7F8 SH3RF1 "E3 ubiquitin-protein ligase SH3RF1" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+AIYPY P+K+DELELR+G ++ V ERCQDGWFKGTS  T + GVFPGNYVAP
Sbjct:   444 YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 497

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1Q3X8 SH3RF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 5.6e-58, Sum P(3) = 5.6e-58
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+AIYPY P+K+DELELR+G ++ V ERCQDGWFKGTS  T + GVFPGNYVAP
Sbjct:   448 YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 501

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q7Z6J0 SH3RF1 "E3 ubiquitin-protein ligase SH3RF1" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 5.8e-58, Sum P(3) = 5.8e-58
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+AIYPY P+K+DELELR+G ++ V ERCQDGWFKGTS  T + GVFPGNYVAP
Sbjct:   450 YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 503

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2444637 Sh3rf3 "SH3 domain containing ring finger 3" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
 Identities = 41/56 (73%), Positives = 47/56 (83%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV 56
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPEC   V
Sbjct:    41 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILV 96

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1913066 Sh3rf1 "SH3 domain containing ring finger 1" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+AIYPY P+K+DELELR+G ++ V ERCQDGW+KGTS  T + GVFPGNYVAP
Sbjct:   457 YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWYKGTSMHTSKIGVFPGNYVAP 510

GO:0005078 "MAP-kinase scaffold activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

RGD|735154 Sh3rf1 "SH3 domain containing ring finger 1" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query:    59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+AIYPY P+K+DELELR+G ++ V ERCQDGW+KGTS  T + GVFPGNYVAP
Sbjct:   458 YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWYKGTSMHTSKIGVFPGNYVAP 511

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0046328 "regulation of JNK cascade" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	3e-33
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	2e-32
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	6e-27
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	2e-25
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	1e-24
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	2e-21
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	3e-20
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	3e-17
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	8e-17
smart00326	56	smart00326, SH3, Src homology 3 domains	9e-16
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	1e-15
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	2e-15
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	6e-15
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	9e-15
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-14
smart00326	56	smart00326, SH3, Src homology 3 domains	7e-14
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	6e-13
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-12
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	2e-12
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	4e-12
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	4e-12
cd11792	55	cd11792, SH3_Fut8, Src homology 3 domain of Alpha1	5e-12
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	2e-11
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-11
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	3e-11
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	4e-11
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	6e-11
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	6e-11
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	2e-10
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	2e-10
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-10
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	3e-10
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	5e-10
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	5e-10
pfam00018	47	pfam00018, SH3_1, SH3 domain	6e-10
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	7e-10
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	7e-10
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	9e-10
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	9e-10
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	2e-09
pfam00018	47	pfam00018, SH3_1, SH3 domain	2e-09
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	2e-09
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-09
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	3e-09
cd11792	55	cd11792, SH3_Fut8, Src homology 3 domain of Alpha1	3e-09
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-09
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	3e-09
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	4e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	4e-09
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	4e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	4e-09
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	4e-09
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	5e-09
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	5e-09
cd11936	62	cd11936, SH3_UBASH3B, Src homology 3 domain of Ubi	5e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-09
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	6e-09
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	6e-09
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	9e-09
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	1e-08
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	1e-08
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	1e-08
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	1e-08
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	1e-08
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-08
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-08
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-08
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	3e-08
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	4e-08
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	4e-08
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	4e-08
smart00184	40	smart00184, RING, Ring finger	4e-08
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	4e-08
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	4e-08
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	6e-08
cd11776	72	cd11776, SH3_PI3K_p85, Src Homology 3 domain of th	7e-08
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	8e-08
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	9e-08
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	9e-08
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	1e-07
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	1e-07
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	1e-07
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	1e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-07
cd11909	74	cd11909, SH3_PI3K_p85beta, Src Homology 3 domain o	1e-07
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-07
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-07
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-07
cd11942	55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	2e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	2e-07
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	3e-07
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	3e-07
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	3e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	3e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	4e-07
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	4e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	4e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	4e-07
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	4e-07
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	5e-07
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-07
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	5e-07
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	5e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	5e-07
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	8e-07
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	9e-07
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	9e-07
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	9e-07
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-06
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-06
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	1e-06
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	2e-06
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	2e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	2e-06
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	2e-06
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	2e-06
cd11910	75	cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain	2e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	3e-06
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	3e-06
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	3e-06
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	3e-06
cd11943	55	cd11943, SH3_JIP1, Src homology 3 domain of JNK-in	3e-06
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	4e-06
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	4e-06
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	4e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	4e-06
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	4e-06
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	4e-06
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	5e-06
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	5e-06
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	6e-06
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	6e-06
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	6e-06
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	6e-06
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	6e-06
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	6e-06
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	7e-06
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	8e-06
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	8e-06
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	8e-06
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	8e-06
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	8e-06
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	9e-06
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	9e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	9e-06
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	1e-05
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	1e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	1e-05
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	1e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	1e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	1e-05
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	1e-05
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	1e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-05
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	1e-05
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	1e-05
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	2e-05
cd11943	55	cd11943, SH3_JIP1, Src homology 3 domain of JNK-in	2e-05
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-05
cd11937	60	cd11937, SH3_UBASH3A, Src homology 3 domain of Ubi	2e-05
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	2e-05
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	2e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	2e-05
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	3e-05
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	3e-05
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	3e-05
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	3e-05
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	3e-05
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	3e-05
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	3e-05
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	3e-05
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	3e-05
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	4e-05
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	4e-05
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	4e-05
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	5e-05
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	5e-05
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	5e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	5e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	5e-05
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	5e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	7e-05
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	7e-05
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	7e-05
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	8e-05
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	9e-05
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	9e-05
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	9e-05
cd12050	56	cd12050, SH3_DOCK2_A, Src Homology 3 domain of Cla	9e-05
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	1e-04
cd11936	62	cd11936, SH3_UBASH3B, Src homology 3 domain of Ubi	1e-04
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-04
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	1e-04
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	1e-04
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	1e-04
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	1e-04
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	1e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-04
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-04
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	2e-04
cd11942	55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	2e-04
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	2e-04
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	2e-04
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	2e-04
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	2e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	2e-04
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	2e-04
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	2e-04
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	2e-04
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	2e-04
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	2e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-04
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-04
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	2e-04
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	3e-04
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	3e-04
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	3e-04
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	4e-04
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	4e-04
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	4e-04
cd11865	55	cd11865, SH3_Nbp2-like, Src Homology 3 domain of S	4e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	4e-04
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	5e-04
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	5e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	5e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	5e-04
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	6e-04
cd11865	55	cd11865, SH3_Nbp2-like, Src Homology 3 domain of S	6e-04
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	6e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	6e-04
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	6e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	7e-04
cd12014	62	cd12014, SH3_RIM-BP_1, First Src homology 3 domain	7e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	7e-04
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	7e-04
cd11854	56	cd11854, SH3_Fus1p, Src homology 3 domain of yeast	7e-04
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	8e-04
cd11937	60	cd11937, SH3_UBASH3A, Src homology 3 domain of Ubi	8e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	8e-04
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	8e-04
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	9e-04
cd11776	72	cd11776, SH3_PI3K_p85, Src Homology 3 domain of th	0.001
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.001
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	0.001
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	0.001
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	0.001
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	0.001
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	0.001
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	0.001
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	0.001
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	0.001
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	0.001
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	0.002
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.002
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	0.002
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	0.002
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.002
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	0.002
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	0.002
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	0.002
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	0.002
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	0.002
cd11896	55	cd11896, SH3_SNX33, Src Homology 3 domain of Sorti	0.002
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	0.002
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.002
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	0.002
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.003
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	0.003
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	0.003
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	0.003
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	0.003
cd12065	54	cd12065, SH3_GRAF2, Src Homology 3 domain of GTPas	0.003
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	0.003
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	0.004
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	0.004
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	0.004
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	0.004
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	0.004
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	0.004
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	0.004
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	0.004

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score =  111 bits (280), Expect = 3e-33
 Identities = 38/52 (73%), Positives = 47/52 (90%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           ++R IVPYPP SE ELEL+ GD+++VHKKR+DGW+KGTLQRTG+TGLFP SF
Sbjct: 1   RYRVIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSF 52

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score =  109 bits (275), Expect = 2e-32
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y+A+YPYKPQK DELELR+G +YTVTE+CQDGWFKGTS RT +SGVFPGNYV P
Sbjct: 2   YVALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYVQP 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 95.8 bits (238), Expect = 6e-27
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y+A+Y YKPQK+DELELR+G +Y V E+CQDGWFKGTS RT  SGVFPGNYV P
Sbjct: 3   YLALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYVTP 56

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 92.0 bits (228), Expect = 2e-25
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y+AIYPY P+K+DELELR+G ++ V ERCQDGWFKGTS  T + GVFPGNYVAP
Sbjct: 2   YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 90.1 bits (224), Expect = 1e-24
 Identities = 33/54 (61%), Positives = 38/54 (70%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y PQ +DELELR G +  V E+C DGWF GTS+RT   G FPGNYVA 
Sbjct: 2   YRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 81.9 bits (202), Expect = 2e-21
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y+PQ +DELELR G    V ++C DGWF G S+RTQ+ G FPGNYVAP
Sbjct: 4   YKAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 57

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 78.9 bits (194), Expect = 3e-20
 Identities = 33/54 (61%), Positives = 39/54 (72%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y PQ DDELELR G +  V E+C DGWF GTS+RT++ G FPGNYV  
Sbjct: 4   YQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKL 57

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 71.2 bits (174), Expect = 3e-17
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           + A+Y Y P+ +DELELR G V  V E+C DGWF GTS+RT+  G FPGNYV
Sbjct: 7   FQALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYV 58

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 70.0 bits (172), Expect = 8e-17
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +R +  Y P +E ELELR GD++YV +K DDGW+ GT +RTG  G FP +++ 
Sbjct: 2   YRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVA 54

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 67.2 bits (165), Expect = 9e-16
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
            P+  A+Y Y  Q  DEL  ++G + TV E+  DGW+KG   R +  G+FP NYV 
Sbjct: 2   GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKE-GLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 66.7 bits (163), Expect = 1e-15
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +A++ Y   + +ELEL++G    V  + Q+GW +G S  T R G+FP NYV+P
Sbjct: 2   CVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYVSP 55

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 66.3 bits (162), Expect = 2e-15
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y  I PY PQ + ELEL+ G +  V ++ +DGWFKGT QRT ++G+FPG++V  
Sbjct: 2   YRVIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 65.2 bits (160), Expect = 6e-15
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
             A+Y Y+ Q DDEL  ++G + TV E+  DGW++G      R G+FP NY
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNG-GREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 64.6 bits (158), Expect = 9e-15
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 59  YIAIYPYKPQKDDELELRRGS-VYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYV 110
              +YPY PQ++DELEL  G  +Y   E      DGW +GTS  T  SG+ P NY 
Sbjct: 2   LRVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYT 57

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 64.4 bits (158), Expect = 1e-14
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             R +  Y    + EL  + GD+I V +K DDGW++G L   GR GLFPA++
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNG-GREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 62.2 bits (152), Expect = 7e-14
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + R +  Y      EL  + GD+I V +K DDGW+KG L R G+ GLFP+++++
Sbjct: 4   QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 60.0 bits (146), Expect = 6e-13
 Identities = 24/54 (44%), Positives = 30/54 (55%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y    DDE+  + G V    E   DGW +GT QRT +SG+ P NYV  
Sbjct: 2   YRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y   KDDEL  + G +  VT++  DGW++G       +G+FPGNYV
Sbjct: 3   VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNG--VTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASF 165
           R + PY P  E ELEL  GD IYV  +      DGW +GT   TG +GL P ++
Sbjct: 3   RVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENY 56

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASFMK 167
           + I P+   +E +L L VG L+ V KK   GW++G LQ  G   + G FPA+++K
Sbjct: 3   QVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             +  + Y+ Q++DEL LR+G    V E+  DGW++G      + G FP NYV  
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECN--GQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212726 cd11792, SH3_Fut8, Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

 Score = 57.2 bits (139), Expect = 5e-12
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
           I P+ P +  E+ELRVGD+I V     DG+ KG  +RTG+TGL+P+
Sbjct: 5   IYPHKPRNHDEIELRVGDIIGVAGNHWDGYSKGRNRRTGKTGLYPS 50

Fut8 catalyzes the alpha1,6-linkage of a fucose residue from a donor substrate to N-linked oligosaccharides on glycoproteins in a process called core fucosylation, which is crucial for growth factor receptor-mediated biological functions. Fut8-deficient mice show severe growth retardation, early death, and a pulmonary emphysema-like phenotype. Fut8 is also implicated to play roles in aging and cancer metastasis. It contains an N-terminal coiled-coil domain, a catalytic domain, and a C-terminal SH3 domain. The SH3 domain of Fut8 is located in the lumen and its role in glycosyl transfer is unclear. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +Y  +Y Y  Q+DDEL + +G V  V E+ +DGW+  T +R  + G+ PG Y+
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWW--TVERNGQKGLVPGTYL 51

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +AIY Y   KDDEL    G++  V ++  DGW++G       +G+FPGNYV
Sbjct: 3   VAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGV--TGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 55.4 bits (133), Expect = 3e-11
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           +  I PY P  E ELELR G++  V ++  DGW+KGT   T + G+FP +++
Sbjct: 2   YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 55.0 bits (133), Expect = 4e-11
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 116 RC--IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           RC  +  Y  N E EL L+ GD+I VH+K+DDGW+ G L   G+ G+FPA++
Sbjct: 1   RCKALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELN--GKKGIFPATY 50

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 54.6 bits (132), Expect = 6e-11
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           K   +  Y  + + EL  + GD+IYV KK DDGWY+G L   G TGLFP ++
Sbjct: 1   KVVALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLN--GVTGLFPGNY 50

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 54.7 bits (132), Expect = 6e-11
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQ 168
           K R +  Y   +E EL LR GD++ +  K   D GW+KG L   G+ G+FP +F++ 
Sbjct: 1   KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELN--GKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 6/59 (10%)

Query: 109 YVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           YVA      + PY P    ELELR G++  V +K  DGW+KGT  RTG++G+FP ++++
Sbjct: 2   YVA------LYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYVQ 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP +++K
Sbjct: 4   YQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 56

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           RC V   Y P +E ELEL+VGD I V  + ++GW++G L   G+ G+FP++F+K
Sbjct: 1   RCKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLN--GKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           F+ +  Y P +E ELELR GD+I V +K DDGW+ GT +RT   G FP +++K+
Sbjct: 7   FQALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 60

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 52.7 bits (126), Expect = 5e-10
 Identities = 23/48 (47%), Positives = 39/48 (81%), Gaps = 2/48 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           Y P +E ELEL+VGD+I ++++ ++GW+ GTL   G++GLFP++F+K+
Sbjct: 9   YVPQNEDELELKVGDIIDINEEVEEGWWSGTL--NGKSGLFPSNFVKE 54

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           IA++PY  Q +DEL  ++G +  V  +    W++G  +   ++G+FP NYV P
Sbjct: 3   IALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRG--ELNGQTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 51.8 bits (125), Expect = 6e-10
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFP 106
           +A+Y Y  ++ DEL  ++G +  V E+  DGW+KG  +  +  G+ P
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKE-GLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            ++ Y PQ +DELEL+ G    V    ++GW++G      + GVFP N+V
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGK--LNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 52.3 bits (125), Expect = 7e-10
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           Y A+Y Y  Q +DE+  R G      +   +GW  GT QRT R+G+ P NY+
Sbjct: 3   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYI 54

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 51.6 bits (124), Expect = 9e-10
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYVAP 112
            ++ Y+ + +DEL LR G + T+  + C+D GW+KG      + GVFP N+V P
Sbjct: 4   VLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELN--GKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 51.5 bits (123), Expect = 9e-10
 Identities = 26/55 (47%), Positives = 40/55 (72%), Gaps = 4/55 (7%)

Query: 116 RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           RC V   Y P +E ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F+K+
Sbjct: 1   RCQVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIKE 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 62  IYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           ++ Y PQ +DELEL+ G +  + E  ++GW+ GT     +SG+FP N+V
Sbjct: 6   LFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTL--NGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 50.6 bits (122), Expect = 2e-09
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
            Y      EL  + GD+I V +K DDGW+KG L+  G+ GL P+
Sbjct: 5   DYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLK-GGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           ++ + +AIY Y   K+DEL  + G++  V ++  DGW++G       +G+FPGNYV
Sbjct: 1   YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV--TGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + A+Y Y+ Q  DEL    G +  ++++    W+K T     ++G+ P NYV  
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGG--KTGLIPSNYVEE 53

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
            C+    Y  +   ELEL+ G+ + V  K  +GW +G    TGR G+FP++++
Sbjct: 1   MCVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYV 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212726 cd11792, SH3_Fut8, Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFP 106
           +AIYP+KP+  DE+ELR G +  V     DG+ KG ++RT ++G++P
Sbjct: 3   VAIYPHKPRNHDEIELRVGDIIGVAGNHWDGYSKGRNRRTGKTGLYP 49

Fut8 catalyzes the alpha1,6-linkage of a fucose residue from a donor substrate to N-linked oligosaccharides on glycoproteins in a process called core fucosylation, which is crucial for growth factor receptor-mediated biological functions. Fut8-deficient mice show severe growth retardation, early death, and a pulmonary emphysema-like phenotype. Fut8 is also implicated to play roles in aging and cancer metastasis. It contains an N-terminal coiled-coil domain, a catalytic domain, and a C-terminal SH3 domain. The SH3 domain of Fut8 is located in the lumen and its role in glycosyl transfer is unclear. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y + PQ+  ELE RRG + TV +     W+KG  +   R G+FP NYV P
Sbjct: 4   ALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELR--GRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
             R I  Y      EL L+ GD++ V  K D+GW++G   R GR GL P+S+++
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGE--RGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 50.0 bits (119), Expect = 4e-09
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           ++ +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP +++
Sbjct: 4   YKAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y   ++DEL L+ G +  V E+  DGW+ G      + G+FP  YV
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELN--GKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 50.0 bits (119), Expect = 4e-09
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K   I  Y  + E EL  + G +IYV KK DDGWY+G +   G TGLFP ++++
Sbjct: 4   KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A + ++   +DEL   +G + TVT+  + GW++GT     ++G FP NYV
Sbjct: 4   AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLN--GKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            A+Y Y+  +D+E+    G + T  E+  +GW+ G + + Q+ G+FP NYV
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQK-GLFPANYV 52

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 50.0 bits (119), Expect = 5e-09
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +R +  Y    E E+  R GD I   +  D+GW  GT+QRTGRTG+ PA++++
Sbjct: 3   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIE 55

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             ++ Y  Q+ DEL L  G V  V  +  DGW++G   R    G FP +Y 
Sbjct: 3   QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYT 53

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212869 cd11936, SH3_UBASH3B, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein B

 Score = 50.0 bits (119), Expect = 5e-09
 Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 62  IYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPA 113
           IYPY PQ DDELEL  G    ++   Q    +GW  GTS  T  SG+ P NY+  A
Sbjct: 7   IYPYTPQNDDELELVPGDYIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 62

UBASH3B, also called Suppressor of T cell receptor Signaling (STS)-1 or T cell Ubiquitin LigAnd (TULA)-2 is an active phosphatase that is expressed ubiquitously. The phosphatase activity of UBASH3B is essential for its roles in the suppression of TCR signaling and the regulation of EGFR. It also interacts with Syk and functions as a negative regulator of platelet glycoprotein VI signaling. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E I  + Y  ++ DEL L+ G + T  ++ ++GW++GT     + G+FP N+V
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLN--GKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +      Y      EL L+VGD+I   KK ++GW++GTL   G+ G+FP +F+K
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLN--GKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 49.6 bits (118), Expect = 6e-09
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + A+Y Y+   +DEL LRRG V  V  +       DGW+ G  +   R G+FP NYV  
Sbjct: 2   WTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRH--RLGIFPANYVTR 58

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 49.6 bits (118), Expect = 6e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y+   DDE+  + G      +   +GW  GT QRT ++G+ P NYV
Sbjct: 6   AMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 48.8 bits (117), Expect = 9e-09
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           A++ + P+ +DE+EL  G    V +   D W +GT+ RT + G+FP  YV 
Sbjct: 4   ALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYVV 54

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           Y P    ELELR G++  V +K  DGW+KGT  RTG +G+FP +++
Sbjct: 9   YKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYV 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 48.9 bits (116), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           FR +  Y    + E+  + GD I   +  D+GW  GT+QRTG+TG+ PA++++
Sbjct: 4   FRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYVE 56

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           P  E E+EL +GD +YV ++ DD W +GT  RTG+ G+FPA++
Sbjct: 10  PRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAY 52

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++R +  Y    E E+  + GD I   ++ DDGW  GT++RTG TG+ PA++++
Sbjct: 4   RYRAVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 57

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R + P+   S  EL L+ GD+IY+ ++ D  WY+G  +  GR G+FPAS+
Sbjct: 3   RALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEG--EHNGRVGIFPASY 50

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          EC +CL+       +LPC H FC+ C+++ + S K   CP C
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK-NTCPLC 41

Length = 45

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           C+  Y      EL L  GD++ V +K  DGWY+G   R G  G FP+S+
Sbjct: 4   CVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSY 52

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y +  Q   EL LR G V T+T +   DGW +G + R +  G+FP +YV
Sbjct: 4   ALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEV-GLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  Y    + E+    GD+I   ++ D+GW+ G     G+ GLFPA++++
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVN-AKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 66  KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             Q D+EL+LR G V T+T     GWF+G      R G+FP  +V
Sbjct: 9   SAQLDEELDLREGDVVTITGILDKGWFRGELN--GRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P Y+  + Y  +++DEL L +G+   V E+C DGW++G+     + G FP NYV
Sbjct: 2   LPAYVK-FNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + A++ Y  + +DEL LRRG    V  +       +GW+ G      + G+FP NYVAP
Sbjct: 2   WTALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGD--KVGIFPSNYVAP 58

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          C +CL+       +LPC HTFC+ C+ + + S     CP C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGN-NTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P ++  + Y  +++DEL L +GS  TV E+C DGW++G+     + G FP NYV
Sbjct: 1   IPAFVK-FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYN--GQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           Y    E EL + VGD+I   KK D GW++G ++  GR GLFP +F+++
Sbjct: 8   YKAQHEDELTITVGDIITKIKKDDGGWWEGEIK--GRRGLFPDNFVRE 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 124 NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SF+K
Sbjct: 11  NSKLELNFKAGDVIFLLSRVNKDWLEGTVR--GATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212710 cd11776, SH3_PI3K_p85, Src Homology 3 domain of the p85 regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
           +Y A+Y Y+ ++D+++ L+ G V  V              E      GW +G ++RT   
Sbjct: 2   QYRALYDYEKERDEDIILKTGDVLVVENPELLALGVPDGKETVPKPEGWLEGKNERTGER 61

Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 62  GDFPGTYV 69

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 46.5 bits (111), Expect = 8e-08
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           ++R +  Y    + E+  + GD+I   +  DDGW +GT+QRTG++G+ PA++++ 
Sbjct: 1   RYRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 46.3 bits (110), Expect = 9e-08
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAP 112
           EYIA+YPY+  +  +L    G V  VT+  +DG W+ GT     R+G+FP NYV P
Sbjct: 1   EYIALYPYESNEPGDLTFNAGDVILVTK--KDGEWWTGTIG--DRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 46.3 bits (110), Expect = 9e-08
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           + +Y Y+  +D+E+EL  G + T  E   + W+ GT+ + + SG+FP NYV
Sbjct: 3   VVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGE-SGLFPSNYV 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           Y A+Y Y    +DE+  + G      ++  DGW  GT +RT  +G+ P NYV
Sbjct: 5   YRAVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 56

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           ++A+Y Y+ +  ++L  ++G  + +    +  W++  S  T ++G  P NYVAPA
Sbjct: 3   FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPA 57

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
             R +  Y P +  EL L+ GD+I V  K   D+GW++G L   GR G FP +F
Sbjct: 1   YCRVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELN--GRRGFFPDNF 52

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 125 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++++
Sbjct: 13  SPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + LEC +CLD L     + PC H FC++C+   +      +CP C
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKS--KCPIC 43

Length = 45

>gnl|CDD|212842 cd11909, SH3_PI3K_p85beta, Src Homology 3 domain of the p85beta regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 15/68 (22%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
           +Y A+YPY+ +++++++L  G V TV+             E+C    GW  G ++RT++ 
Sbjct: 2   QYRALYPYRKEREEDIDLLPGDVLTVSRAALQALGVKEGGEQCPQSIGWILGLNERTKQR 61

Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 62  GDFPGTYV 69

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. In addition to regulating the p110 subunit, p85beta binds CD28 and may be involved in the activation and differentiation of antigen-stimulated T cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 74

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K   I  Y  + + EL    G +IYV KK DDGWY+G       TGLFP ++++
Sbjct: 1   KVVAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGV--TGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           FR +  Y      EL    GDL+Y+  K D  W+K T    G+TGL P+++
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCG--GKTGLIPSNY 50

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            A+YP+K Q   EL L++G +  +  +    W++G      R G+FP +YV
Sbjct: 3   RALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNG--RVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
          EC +CLD  +   +V  LPC H F K+CL++ + S     CP C
Sbjct: 2  ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN--TCPLC 43

Length = 46

>gnl|CDD|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R +  + P  E ELEL V D + V  + DD WY+G   RTG  G+FPA +
Sbjct: 3   RAVFRFIPRHEDELELDVDDPLLVEAEEDDYWYRGYNMRTGERGIFPAFY 52

JNK-interacting protein 2 (JIP2) is also called Mitogen-activated protein kinase 8-interacting protein 2 (MAPK8IP2) or Islet-brain-2 (IB2). It is widely expressed in the brain, where it forms complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. JIP2 is enriched in postsynaptic densities and may play a role in motor and cognitive function. In addition to a JNK binding domain, JIP2 also contains SH3 and Phosphotyrosine-binding (PTB) domains. The SH3 domain of the related protein JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL---QRTGRTGLFPASF 165
             +  + P S+ +L  + GD+IYV  K   GW+ G +       + G FP+++
Sbjct: 3   VALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
            A  KF     Y    E EL LR GD + V +K  DGW++G     G+ G FP
Sbjct: 1   PAVVKFN----YEAQREDELSLRKGDRVLVLEKSSDGWWRGECN--GQVGWFP 47

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT---SQRTQRSGVFPGNYVAP 112
            A+YPY+   +D+L    G + TVTE     W+ G    S    + G+FP N+V  
Sbjct: 5   KALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           EY+A+Y Y+  +  +L  ++G V  VT++  D W   T     ++GVFP NYV P
Sbjct: 1   EYVAMYTYESNEQGDLTFQQGDVILVTKKDGDWW---TGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + A++ Y+   +DEL LRRG    V  +       +GW+ G  +   R G+FP NYV  
Sbjct: 2   WTAVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTG--KINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           EL+LR GD++ +    D GW++G L   GR G+FP  F
Sbjct: 15  ELDLREGDVVTITGILDKGWFRGELN--GRRGIFPEGF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           Y+A+Y +KPQ++++LE+R G   T+ +   + W+KG  +   R G FP N+V
Sbjct: 2   YVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIE--DRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)

Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           V  AKF     +   +E EL    GD+I+V +  + GW++GT    GRTG FP++++++
Sbjct: 1   VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 62  IYPYKPQKDDELELRRGSVYTV-TERCQD-GWFKGTSQRTQRSGVFPGNYV 110
           ++PY+ Q +DEL ++ G + T+ ++ C D GW++G  +   R GVFP N+V
Sbjct: 5   LFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEG--ELNGRRGVFPDNFV 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 112 PAKFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
             + R I+PY   P+++ EL  + GD+  VH + +DGW   T  RTG +GL     ++
Sbjct: 1   RRRVRAILPYNKVPDTD-ELSFQKGDIFVVHNELEDGWLWVTSLRTGESGLVFRDLVE 57

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASF 165
              I  +   SE EL L+ GD I +  + D    DGWY G   RTG TGLFP  F
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIEL-IEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y  Q  DEL    G +  + +    GW+ G  +   + G+FPGNYV
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRG--KEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P   A+Y ++P+ + EL  + G + T+T +  + W++G      +SG FP NYV
Sbjct: 1   PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVN--GQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 6/57 (10%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           A AK+     +  ++  EL  R GD+I + ++ D+ WY+G +   GR G+FP S+++
Sbjct: 2   ARAKYN----FNADTGVELSFRKGDVITLTRRVDENWYEGRI--GGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          C +CL+       +LPC H FC KC+   + S   + CP C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLES-GNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           Y+A+Y Y+ + DD+L  ++G    + +     W+      T + G  P NY
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E  A Y +      EL  R+G V T+T R  + W++G  +   R G+FP +YV
Sbjct: 1   EARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEG--RIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 43.7 bits (103), Expect = 9e-07
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y ++  +DDEL    G V  V +     W+KG  +   + G+FP NYVAP
Sbjct: 4   ALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKG--RLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y ++  +D+EL  + G + TV +     W+KG++ R +  G+FP N+V
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE--GLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           P    ELE R GD+I V    D  W+KG L+  GR G+FPA++
Sbjct: 10  PQEPGELEFRRGDIITVLDSSDPDWWKGELR--GRVGIFPANY 50

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 18/44 (40%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 125 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +E EL +  GD+IYV +  + GW++GTL   G+TG FP++++++
Sbjct: 14  NEDELSVCKGDIIYVTRVEEGGWWEGTLN--GKTGWFPSNYVRE 55

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y+ + DDE+        T  E   +GW+KGT       G+FP NYV
Sbjct: 4   VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCH--GHRGLFPANYV 52

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 10 LECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCP 50
            C +  + +        +LPC H + +K LE++  +  + +CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             A+YP++ +K++ L   +G + TV E+ Q+ W+ G        G FP +YV
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLEQ-QEMWWFGEL-EGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             + Y PQ +DELEL+ G +  V    ++GW++G      ++G+FP N++
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E I  + YK Q +DEL +  G + T  ++   GW++G  +   R G+FP N+V
Sbjct: 1   EAIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEG--EIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 62  IYPYKPQKDDELELRRGSVYTVT--ERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++ Y P   DEL L++G V  V   E   +GW++G      R G FP N+V P
Sbjct: 5   LFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELN--GRRGFFPDNFVMP 55

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-----HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K R    Y      EL    GD+I V      +++D+GW  G  + TG  G+FP +F +
Sbjct: 4   KVRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENFTE 62

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212843 cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain of the p85alpha regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
           +Y A+Y YK +++++++L  G + TV +                 + GW  G ++ T   
Sbjct: 3   QYRALYDYKKEREEDIDLHLGDILTVNKGSLLALGFSEGQEARPEEIGWLNGYNETTGER 62

Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 63  GDFPGTYV 70

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. In addition to regulating the p110 subunit, p85alpha interacts with activated FGFR3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 75

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R    +   +E EL    GD+I V +  + GW++GTL   G+TG FP++++K
Sbjct: 3   RAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLN--GKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           Y+A+Y + PQ++++L L+ G    V +   + W+KG S    R G FP N+V
Sbjct: 2   YVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSG--DRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           EYIA+YPY   +  +L    G    VT++  + W   T     R+G+FP NYV P
Sbjct: 1   EYIALYPYSSSEPGDLTFNEGEEILVTQKDGEWW---TGSIEDRTGIFPSNYVRP 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 126 EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           E EL  R G+ I + +K ++ WY+G +  TGR G+FPAS+++
Sbjct: 14  EVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212876 cd11943, SH3_JIP1, Src homology 3 domain of JNK-interacting protein 1

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R +  + P    ELEL V D + V  + +D WY+    RTG  G+FPA +
Sbjct: 3   RAVFRFVPRHPDELELEVDDPLLVEVQAEDYWYEAYNMRTGARGIFPAYY 52

JNK-interacting protein 1 (JIP1) is also called Islet-brain 1 (IB1) or Mitogen-activated protein kinase 8-interacting protein 1 (MAPK8IP1). It is highly expressed in neurons, where it functions as an adaptor linking motor to cargo during axonal transport. It also affects microtubule dynamics in neurons. JIP1 is also found in pancreatic beta-cells, where it is involved in regulating insulin secretion. In addition to a JNK binding domain, JIP1 also contains SH3 and Phosphotyrosine-binding (PTB) domains. Its SH3 domain homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNY 109
            I I+ +  + +DEL L+ G    + E  +   DGW+ G + RT  +G+FP  +
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           +A+Y Y+   DDE+      + T  E   +GW++G  +   + G+FP NYV 
Sbjct: 3   VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCR--GKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           EL L+ GD++Y++K+ D  WY+G  +  GR G+FP S+++
Sbjct: 16  ELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y   + DEL + RG +  V  +  D W+ G+    Q+ G FP NYV
Sbjct: 3   VALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQ-GYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFMK 167
           P   + I  Y      +L L  G LI + KK   GW++G LQ  G+    G FPA+++K
Sbjct: 3   PEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 121 YPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           Y    E EL +RVG++I  V K  ++GW +G L   GR G+FP +F+K+
Sbjct: 8   YDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELN--GRRGMFPDNFVKE 54

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 121 YPPNSEYELEL--RVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y   +E E EL    G +I  V    + GW +GTL   GRTGL P ++++
Sbjct: 6   YACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLN--GRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +  ++  EL LR GD + + K+ D  WY+G +  T R G+FP S+++
Sbjct: 9   FNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 61  AIYPYKPQKDDELELRRGSVYT-VTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y  K + + EL    G + T V    + GW +GT     R+G+ P NYV  
Sbjct: 4   ALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLN--GRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 41.4 bits (98), Expect = 6e-06
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASF 165
           +  + E++L L+VGD + + ++  +GWY+G   R     G+FP S+
Sbjct: 8   FQGDGEHQLSLQVGDTVQILEE-CEGWYRGFSLRNKSLKGIFPKSY 52

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           + I +Y Y  Q DDEL   +G +  V  +    W+KG  +   + G+FP NYV
Sbjct: 2   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--ELNGQVGLFPSNYV 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +YI    YK + +DE+    G V  V ++  DGW+K   Q   + G  P  Y+
Sbjct: 2   KYITTQAYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQ--GKEGWAPATYL 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  AIYPYKPQKDDELELRRGSVYT-VTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y+ Q+ DEL  + G + T + E  + GW KG  +   R G++P NYV
Sbjct: 4   ALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKG--RLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           +A+YPY    +D+L  ++G    V E   + W+K  S  T++ G  P NYVA  
Sbjct: 3   VALYPYDGIHEDDLSFKKGEKLKVIEEHGE-WWKARSLTTKKEGFIPSNYVAKV 55

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K R +  +    + EL  + G++I V    D  W+KG+  R    GLFPA+F+ 
Sbjct: 2   KVRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHR--GEGLFPANFVT 53

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ---RTQRSGVFPGNYV 110
            I P+    +++L L  G +  V ++   GW++G  Q   + ++ G FP NYV
Sbjct: 4   VIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYV 56

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 41.1 bits (97), Expect = 8e-06
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           P +E EL  + GD+I +  + D+ WY+G +   G++G FP ++
Sbjct: 11  PENEGELGFKEGDIITLTNQIDENWYEGMVN--GQSGFFPVNY 51

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
           Y A+Y ++ +  DE+  + G +  V E    + GW  G  +   ++G FP NYV
Sbjct: 2   YRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELK--GKTGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
            ++E EL  R GD+I V  + D DG+Y G L   G+ GL P++F++
Sbjct: 17  VDAEVELSFRAGDIITVFGEMDEDGFYYGELN--GQRGLVPSNFLE 60

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 41.0 bits (96), Expect = 8e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +P     +L L  G+++Y+ +K D  WY+G  +    TG+FPA+ +K
Sbjct: 8   FPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCK--NTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 41.3 bits (96), Expect = 9e-06
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 2   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 56

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 40.8 bits (96), Expect = 9e-06
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y+   D E+    G + T  E+  +GW++GT       G+FP NYV
Sbjct: 4   ALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGP-DGTYGLFPANYV 52

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 41.1 bits (97), Expect = 9e-06
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 116 RCIVPYPP-NSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
           R +  + P N E EL L+ GD++ V  K D       W+KG   R GR G FP+++
Sbjct: 3   RALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRT-RDGRIGWFPSNY 57

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +   + PY   +E EL  + GD+I V  K D  W++G L   G+TGLFP+++++
Sbjct: 1   QVIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELN--GQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 109 YVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           YVA  KF+      P    +LE+R GD I +    ++ W+KG ++   R G FPA+F+++
Sbjct: 2   YVALYKFK------PQENEDLEMRPGDKITLLDDSNEDWWKGKIED--RVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + +  Y      EL    GD+I + K+   GW+ G L+  G+ GLFP +++++
Sbjct: 3   KALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLR--GKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E +A Y +K   + EL  R+G    +  +  + W++G    T R G+FP +YV
Sbjct: 2   EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E +A Y +    + EL LR+G    + ++    W++G    T R G+FP +YV
Sbjct: 2   EAVAKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYV 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            Y+AI  Y+ Q DDE+ L+ G V  V E+   GW+    ++  + G  P +Y+ P
Sbjct: 1   SYVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWW--YVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           R I  + P+   EL L  GD+I V K  D+ W  GT  + G TG FP+SF+
Sbjct: 3   RAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGT--KEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
            + E EL    GD++ V+   D DG+Y G L+  GR GL P++F++
Sbjct: 17  DDPEEELSFHAGDVVRVYGPMDEDGFYYGELEG-GRKGLVPSNFVQ 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           R +  +   +  EL  + GD +Y+ +K D  WY+G  +  GR G+FP S++++
Sbjct: 4   RAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           +A+Y Y+P  D +L   +G    + E     W+K  S  T + G  P N+VA
Sbjct: 3   VALYSYEPSHDGDLGFEKGEKLRILE-QSGEWWKAQSLTTGQEGFIPFNFVA 53

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           VA  +F+ + P       EL+  VGD I +    +DGW +G L+  GR G+FP  F
Sbjct: 3   VALYRFQALEPN------ELDFEVGDRIRIIATLEDGWLEGELK--GRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
           + + PY   +E EL ++ GD++ +  K   D GW++G L   GR G+FP +F+K
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGEL--NGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212876 cd11943, SH3_JIP1, Src homology 3 domain of JNK-interacting protein 1

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           A++ + P+  DELEL       V  + +D W++  + RT   G+FP  Y
Sbjct: 4   AVFRFVPRHPDELELEVDDPLLVEVQAEDYWYEAYNMRTGARGIFPAYY 52

JNK-interacting protein 1 (JIP1) is also called Islet-brain 1 (IB1) or Mitogen-activated protein kinase 8-interacting protein 1 (MAPK8IP1). It is highly expressed in neurons, where it functions as an adaptor linking motor to cargo during axonal transport. It also affects microtubule dynamics in neurons. JIP1 is also found in pancreatic beta-cells, where it is involved in regulating insulin secretion. In addition to a JNK binding domain, JIP1 also contains SH3 and Phosphotyrosine-binding (PTB) domains. Its SH3 domain homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV P
Sbjct: 4   ALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACH--GQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212870 cd11937, SH3_UBASH3A, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein A

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQD----GWFKGTSQRTQRSGVFPGNY 109
           A++ YKPQ  DEL L  G    V    Q     GW  G S RT   G  P NY
Sbjct: 5   ALFQYKPQNIDELMLSPGDYIFVDPTQQSEASEGWVIGISHRTGCRGFLPENY 57

UBASH3A is also called Cbl-Interacting Protein 4 (CLIP4), T cell Ubiquitin LigAnd (TULA), or T cell receptor Signaling (STS)-2. It is only found in lymphoid cells and exhibits weak phosphatase activity. UBASH3A facilitates T cell-induced apoptosis through interaction with the apoptosis-inducing factor AIF. It is involved in regulating the level of phosphorylation of the zeta-associated protein (ZAP)-70 tyrosine kinase. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 62  IYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           I  YK Q++DEL L +  +  V ++  DGW +G        G FP ++V  
Sbjct: 5   IRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVEE 55

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP++++K
Sbjct: 9   YTANNEDELSFSKGQLINVLNKDDPDWWQGEIN--GVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y+ Q+ DEL   + ++ T  E+   GW++G     ++   FP NYV
Sbjct: 4   ALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRG-DYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E IA Y +K   DDEL  +RG +  V  E C   W+K  ++   + G  P NY+
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYK--AELNGKDGFIPKNYI 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 121 YPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFM 166
           Y  + E EL LR GD++ V  +      DDGW+ G ++   R G+FPA+++
Sbjct: 8   YEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRH--RLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 121 YPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASF 165
           Y  ++E EL LR GD + V  K      D+GW+ G +    R G+FP+++
Sbjct: 8   YEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKIN--DRVGIFPSNY 55

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 60  IAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            AI PY    D DEL  ++G ++ V    +DGW   TS RT  SG+   + V  
Sbjct: 5   RAILPYNKVPDTDELSFQKGDIFVVHNELEDGWLWVTSLRTGESGLVFRDLVEE 58

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVT-----ERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A + Y  +  DEL   +G V  V      E   +GW  G  + T   GVFP N+   
Sbjct: 7   ATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENFTER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK 114
           EYI  Y Y    +DEL +R G +    ++ + +GW +G  +   R G+FP N+V   K
Sbjct: 1   EYIVEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEG--ELNGRRGMFPDNFVKEIK 56

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + +  Y      +L  + GD+I + K+ D+ WY G     G+ G FPAS+
Sbjct: 3   KALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECN--GKQGFFPASY 50

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 61  AIYPYKPQKDDELELRRGSVYT-VTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+YP+    + +L    G V T +    +DGW  G ++R+ R G FP  Y  P
Sbjct: 5   ALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +   +E +L  + GD I V +  D  W +G L   GR G+FP +F
Sbjct: 8   FTGETEEDLSFQRGDRILVTEHLDAEWSRGRLN--GREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFM 166
           I  Y      EL L++GD +++ +  + GWY+G TL++  + G+FPAS++
Sbjct: 5   IYNYDARGPDELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + + + P+    E +L    GD+I  +  +  DGW+ G  +R+GR G FP ++ + 
Sbjct: 2   RVKALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +Y  IYPY  +  DE+ L +G+V  V ++  +GW+K   Q  +  G  P +Y+
Sbjct: 2   KYTVIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKE--GWAPASYL 52

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +A+Y ++P +  +L L +G  Y V +   + W++   +     G  P NYV  
Sbjct: 3   VALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGN-EGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           + IA+Y Y    +DEL   +G +  V  +    W++G  +    +G+FP NYV
Sbjct: 2   QVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQG--EINGVTGLFPSNYV 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           AIY ++  +D+EL  + G + T+ +     W+KG +   Q +G+FP N+V
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETP--QGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRT-QRSGVFPGNYV 110
           +A+Y +  ++  +L  ++G + T+ ++   Q+ W+ G   R   R G+FP NYV
Sbjct: 3   VALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTG---RIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASF 165
           EL    G++I V  + DD W++G ++    R G+FP SF
Sbjct: 15  ELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVA 111
           A+Y ++ Q+  +L  + G   TV  R   Q  W++G  +   R G+FP NYV+
Sbjct: 4   ALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLR--GRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +   I  Y      EL L+  D++ V +   DGWY G   R G  G FP+S  K+
Sbjct: 1   QVEIIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFPSSCAKE 55

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A + ++   +DEL   +G V  VT   + GW++GT     R+G FP NYV
Sbjct: 4   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG-TSQRTQRSGVFPGNYV 110
           +AIY Y  +  DEL L+ G    + E   +GW++G T ++  + G+FP +Y+
Sbjct: 3   VAIYNYDARGPDELSLQIGDTVHILE-TYEGWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           K + +  +   +E +L    GDLI V    D  W+ G L+R G  G+FP++F+
Sbjct: 1   KVKAVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           PY  N   +L    GD+I V KK  + W+ GT+    RTG+FP+++++
Sbjct: 7   PYESNEPGDLTFNAGDVILVTKKDGE-WWTGTIG--DRTGIFPSNYVR 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASF 165
           K+R +  +   +  E+  + GD+I V + +    GW  G L+  G+TG FPA++
Sbjct: 1   KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELK--GKTGWFPANY 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A Y +  +   +L  RRG +  V +     W++G    + R G FP NYV P
Sbjct: 4   AQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRI--SGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWF---KGTSQRTQRSGVFPGNYVA 111
           Y A++ +K + D+EL  + G  + + ER  D W       +      G  P NY+A
Sbjct: 2   YKALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYLA 57

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212983 cd12050, SH3_DOCK2_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis protein 2

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFM 166
           +L L++GD++++ +  +D WYKG L R     G+FP SF+
Sbjct: 15  QLSLQIGDVVHIQETCED-WYKGYLVRHKDLQGIFPKSFI 53

Dock2 is a hematopoietic cell-specific, class A DOCK and is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. It plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock2 binds to DHR-2 in an autoinhibitory manner; binding of the scaffold protein Elmo to the SH3 domain of Dock2 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K+  +  Y    + EL +  GD++ V +K +DGW+  T++R G+ GL P ++++
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWW--TVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212869 cd11936, SH3_UBASH3B, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein B

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
            + I PY P ++ ELEL  GD I++         +GW  GT   TG +GL P +++ ++
Sbjct: 4   LQVIYPYTPQNDDELELVPGDYIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 62

UBASH3B, also called Suppressor of T cell receptor Signaling (STS)-1 or T cell Ubiquitin LigAnd (TULA)-2 is an active phosphatase that is expressed ubiquitously. The phosphatase activity of UBASH3B is essential for its roles in the suppression of TCR signaling and the regulation of EGFR. It also interacts with Syk and functions as a negative regulator of platelet glycoprotein VI signaling. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  + P  + EL  R GD I V    D  W+KG     G+TG+FP +++ 
Sbjct: 3   QALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACH--GQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           CI  Y      EL L   D+I V ++  DGW +G     G  G FP S ++
Sbjct: 4   CIRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y P    +L+LR+G  Y + E     W++    +  R G  P NYV
Sbjct: 4   VALYDYTPMNAQDLQLRKGEEYVILEESNLPWWRA-RDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNY 109
           A+Y Y+ Q   EL   +G  + V     Q  W++ T+  T + G+ P +Y
Sbjct: 4   ALYDYRAQTPGELSFSKGDFFHVIGEEDQGEWYEATNPVTGKRGLVPKSY 53

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +R I  Y  +S+ E+ L+ GD++ V +K ++GW+    Q   + G  PAS+++
Sbjct: 2   YRAIADYEKSSKSEMALKTGDVVEVVEKSENGWW--FCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 61  AIYPYKPQKDDELELRRG-SVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y  Q+ DEL  + G  +  + E  + GW KG    + R G++P NYV
Sbjct: 6   ALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLL-SGRIGLYPANYV 55

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           A+Y ++  +D+EL  + G +  V +     W+KG + R    G+FP N+V 
Sbjct: 6   ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--VGLFPSNFVT 54

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQ 168
           + +  Y   +E EL+ + G++I +  K   + GW+KG L   G+ G+FP +F+ Q
Sbjct: 5   KALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELN--GKEGVFPDNFVSQ 57

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 116 RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R +V   Y  + + E+EL  G+++   +  D+ W+ GT  + G +GLFP+++++
Sbjct: 1   RAVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSK-GESGLFPSNYVE 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           A++ + P+ +DELEL       V     D W++G + RT   G+FP  Y
Sbjct: 4   AVFRFIPRHEDELELDVDDPLLVEAEEDDYWYRGYNMRTGERGIFPAFY 52

JNK-interacting protein 2 (JIP2) is also called Mitogen-activated protein kinase 8-interacting protein 2 (MAPK8IP2) or Islet-brain-2 (IB2). It is widely expressed in the brain, where it forms complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. JIP2 is enriched in postsynaptic densities and may play a role in motor and cognitive function. In addition to a JNK binding domain, JIP2 also contains SH3 and Phosphotyrosine-binding (PTB) domains. The SH3 domain of the related protein JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           R +  +    + EL    GD+I V    +  W+KG L   G+ GLFPA+++  
Sbjct: 3   RALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLH--GKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           A + +K   +DEL + +G +  VT   + GW++GT     ++G FP NYV   K
Sbjct: 6   ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT--LNGKTGWFPSNYVREIK 57

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS-GVFPGNYV 110
           +AIY ++   + +L L+ G    + E C +GW++G S R +   G+FP +YV
Sbjct: 3   VAIYNFQGDGEHQLSLQVGDTVQILEEC-EGWYRGFSLRNKSLKGIFPKSYV 53

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVT--ERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           A++ Y+   +DEL+ + G +  +   +  + GW+KG  +   + GVFP N+V+
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKG--ELNGKEGVFPDNFVS 56

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 62  IYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           ++PY  Q+ DEL L    V  + ++  DGW  G     Q  G FP + V
Sbjct: 5   VHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVV 53

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+YP++ +KD+ L   +  V TV E+ QD W+ G  Q  Q+ G FP +YV
Sbjct: 4   ALYPWRAKKDNHLNFNKNDVITVLEQ-QDMWWFGEVQ-GQK-GWFPKSYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFMK 167
           Y  +   +L L  G LI + KK   GW+ G LQ  G+    G FPAS +K
Sbjct: 8   YVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y ++P +  +L L  G  Y + E+    W+K   +  +  G  P NYV
Sbjct: 4   VAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWKARDKYGKE-GYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           TF     A++ YK Q++DEL   + ++    E+ + GW++G     ++   FP NYV
Sbjct: 1   TFKCAVKALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYG-GKKQLWFPSNYV 56

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           A AKF     +  +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP +++ 
Sbjct: 3   AIAKFN----FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            Y A+  ++ +++ +L  ++G V  +  +  DGW+   + +  R G+ P  Y+  
Sbjct: 1   LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNR-GLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 11  ECSVCLDRLDTSSK--VLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP 57
           EC++C+     + +  VLPC H F   C+++ +  +   +CP C T +P
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRTAIP 372

Length = 374

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAP 112
            IA Y + P  + +L+L++G    V     DG W+   S  T + G  P NYVA 
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVL--KSDGEWWLAKSLTTGKEGYIPSNYVAR 54

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
              I+ Y     +EL L++G V  V ++  +GW++G   R  R G+ P +YV  
Sbjct: 2   GRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGE--RGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +  I  Y    + E+ L+ G+++ V +K D GW+   +++  + G  PAS+++
Sbjct: 1   SYVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWW--YVRKGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 61  AIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNY 109
           A+Y Y+ Q DDE+ +R G    V       GW  G     +  G+FP +Y
Sbjct: 4   ALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVK--GLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 61  AIYPYKPQKDD-ELELRRGSVYTV-----TERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y + P+  + EL L++G +  V            W+KG + R  R G FP NYV
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRT-RDGRIGWFPSNYV 58

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 128 ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMK 167
           +L  + GD I V  + D    W++G L+  GR G+FPA+++ 
Sbjct: 15  DLSFQAGDRITVLTRTDSQFDWWEGRLR--GRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E IA + +      E+  R+G   T+  +  + W++G    T R G+FP  YV
Sbjct: 2   EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212799 cd11865, SH3_Nbp2-like, Src Homology 3 domain of Saccharomyces cerevisiae Nap1-binding protein 2 and similar fungal proteins

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y ++P+ D+EL    G +  +  +   GW     +   ++G+ P  +V
Sbjct: 3   VALYDFEPEHDNELGFAEGQILFILYKHGQGWLIAEDESGGKTGLVPEEFV 53

This subfamily includes Saccharomyces cerevisiae Nbp2 (Nucleosome assembly protein 1 (Nap1)-binding protein 2), Schizosaccharomyces pombe Skb5, and similar proteins. Nbp2 interacts with Nap1, which is essential for maintaining proper nucleosome structures in transcription and replication. It is also the binding partner of the yeast type II protein phosphatase Ptc1p and serves as a scaffolding protein that brings seven kinases in close contact to Ptc1p. Nbp2 plays a role many cell processes including organelle inheritance, mating hormone response, cell wall stress, mitotic cell growth at elevated temperatures, and high osmolarity. Skb5 interacts with the p21-activated kinase (PAK) homolog Shk1, which is critical for fission yeast cell viability. Skb5 activates Shk1 and plays a role in regulating cell morphology and growth under hypertonic conditions. Nbp2 and Skb5 contain an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPG 107
           A+Y Y+ Q D+EL    G++  +  +      DGW++G  +   R GVFP 
Sbjct: 4   ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEG--EFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y  N + +L  + GD+I V KK  D W+ GT+    +TG+FP+++++
Sbjct: 8   YESNEQGDLTFQQGDVILVTKKDGD-WWTGTV--GDKTGVFPSNYVR 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           Y  N   EL +  GD+I V  K +D W+ G+L   G+ G FPA+++
Sbjct: 8   YTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVN-GQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +C+ PY      EL L + D++ +  K DDGW  G        G FP+S +++
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVEE 55

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 128 ELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           EL L+ GD+I + +KK   GW++G +   GR G FPA+++++
Sbjct: 15  ELSLKEGDIIKILNKKGQQGWWRGEIY--GRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 109 YVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           YVA  KF       P    +L L+ GD + V    ++ W+KG      R G FPA+F+++
Sbjct: 2   YVALYKFL------PQENNDLPLQPGDRVMVVDDSNEDWWKGKSG--DRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212799 cd11865, SH3_Nbp2-like, Src Homology 3 domain of Saccharomyces cerevisiae Nap1-binding protein 2 and similar fungal proteins

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + P  + EL    G ++++  K   GW     +  G+TGL P  F+ 
Sbjct: 8   FEPEHDNELGFAEGQILFILYKHGQGWLIAEDESGGKTGLVPEEFVS 54

This subfamily includes Saccharomyces cerevisiae Nbp2 (Nucleosome assembly protein 1 (Nap1)-binding protein 2), Schizosaccharomyces pombe Skb5, and similar proteins. Nbp2 interacts with Nap1, which is essential for maintaining proper nucleosome structures in transcription and replication. It is also the binding partner of the yeast type II protein phosphatase Ptc1p and serves as a scaffolding protein that brings seven kinases in close contact to Ptc1p. Nbp2 plays a role many cell processes including organelle inheritance, mating hormone response, cell wall stress, mitotic cell growth at elevated temperatures, and high osmolarity. Skb5 interacts with the p21-activated kinase (PAK) homolog Shk1, which is critical for fission yeast cell viability. Skb5 activates Shk1 and plays a role in regulating cell morphology and growth under hypertonic conditions. Nbp2 and Skb5 contain an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  Y      +L+   GD+I + +K D+ WY G L   G  G  PAS+++
Sbjct: 4   KALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELN--GCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +IA+  Y PQ + E++L RG    V    + G+++GT +   R+G FP + V
Sbjct: 3   FIAVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVK--GRTGWFPADCV 52

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            A+Y + P++   L L+R   Y + E+    W+K    R    G+ P NYV
Sbjct: 4   KALYDFLPREPSNLALKRAEEYLILEQYDPHWWKA-RDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPA 163
           R +  Y   S+ EL    G +I + +K     DDGW++G     GR G+FP+
Sbjct: 3   RALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFN--GRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212947 cd12014, SH3_RIM-BP_1, First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 124 NSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFM 166
           N E EL L  GD +YV+   D DG+Y+G L   GR GL P++F+
Sbjct: 18  NPEAELPLNAGDYVYVYGDMDEDGFYEGELL-DGRRGLVPSNFV 60

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG-----TSQRTQRSGVFPGNY 109
           Y A+Y Y+PQ +DEL ++   +  + E+  D W+K      +S   +  G+ P  Y
Sbjct: 2   YKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 164
           +L+   GD+I + ++ D+ WY G +     +G+FPAS
Sbjct: 16  DLKFNKGDVILLRRQLDENWYLGEINGV--SGIFPAS 50

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212788 cd11854, SH3_Fus1p, Src homology 3 domain of yeast cell fusion protein Fus1p

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGW---FKGTSQRTQRSGVFPG 107
               I  ++P  DDEL ++ G    V     DGW    +       R G+ PG
Sbjct: 1   LMTVISTFEPSLDDELLIKVGETVRVLAEYDDGWCLVERADGLNGDR-GMVPG 52

Fus1p is required at the cell surface for cell fusion during the mating response in yeast. It requires Bch1p and Bud7p, which are Chs5p-Arf1p binding proteins, for localization to the plasma membrane. It acts as a scaffold protein to assemble a cell surface complex which is involved in septum degradation and inhibition of the NOG pathway to promote cell fusion. The SH3 domain of Fus1p interacts with Bin1p, a formin that controls the assembly of actin cables in response to Cdc42 signaling. It has been shown to bind the motif, R(S/T)(S/T)SL, instead of PxxP motifs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y   ++ EL    G +I V  K D  W+KG L   G+ GLFP++++K
Sbjct: 9   YTAQNDDELAFSKGQIINVLNKEDPDWWKGEL--NGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212870 cd11937, SH3_UBASH3A, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein A

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGTLQRTGRTGLFPASFMKQ 168
            R +  Y P +  EL L  GD I+V   +      GW  G   RTG  G  P ++ ++
Sbjct: 3   LRALFQYKPQNIDELMLSPGDYIFVDPTQQSEASEGWVIGISHRTGCRGFLPENYTER 60

UBASH3A is also called Cbl-Interacting Protein 4 (CLIP4), T cell Ubiquitin LigAnd (TULA), or T cell receptor Signaling (STS)-2. It is only found in lymphoid cells and exhibits weak phosphatase activity. UBASH3A facilitates T cell-induced apoptosis through interaction with the apoptosis-inducing factor AIF. It is involved in regulating the level of phosphorylation of the zeta-associated protein (ZAP)-70 tyrosine kinase. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
            F  +  Y P  E E++L  G+ + V    + G+++GT++  GRTG FPA
Sbjct: 2   TFIAVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVK--GRTGWFPA 49

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +Y+ +  YK Q+ +E+ LR G V  V E+ ++GW+  + +  Q  G  P  Y+ P
Sbjct: 1   QYVVVADYKKQQPNEISLRAGDVVDVIEKNENGWWFVSLEDEQ--GWVPATYLEP 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 35.7 bits (83), Expect = 9e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQ 168
           P P  +E EL  + G LI V+  +D DG+Y G  +  GR GL P + + +
Sbjct: 15  PNPDAAEEELPFKEGQLIKVYGDKDADGFYLG--EINGRRGLVPCNMVSE 62

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212710 cd11776, SH3_PI3K_p85, Src Homology 3 domain of the p85 regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 15/68 (22%)

Query: 113 AKFRCIVPYPPNSEYELELRVGDLIYVHK---------------KRDDGWYKGTLQRTGR 157
            ++R +  Y    + ++ L+ GD++ V                  + +GW +G  +RTG 
Sbjct: 1   VQYRALYDYEKERDEDIILKTGDVLVVENPELLALGVPDGKETVPKPEGWLEGKNERTGE 60

Query: 158 TGLFPASF 165
            G FP ++
Sbjct: 61  RGDFPGTY 68

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R +  Y    + E+    GD+I   ++ D+GW++GT    G  GLFPA++++
Sbjct: 3   RALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGP-DGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           K+  I PY    + E+ L  G ++ V +K  +GW+K  ++  G+ G  PAS++K+
Sbjct: 2   KYTVIYPYTARDQDEINLEKGAVVEVIQKNLEGWWK--IRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTG-RTGLFPASFMK 167
           +      +L  + GD+I + KK D  + W+ G   R G R G+FPA++++
Sbjct: 8   FAGEQPGDLAFQKGDIITILKKSDSQNDWWTG---RIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +      +L  R GD+I V    D  W++G +  +GR G FP +++  
Sbjct: 8   FSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRI--SGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
           K R +  +    + EL  + G++I V    D  W+KG   R    GLFP++F+   
Sbjct: 3   KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--VGLFPSNFVTTD 56

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           A+Y +  + +DEL  + G + T  E   + W  G  +   +SG+FP N+
Sbjct: 4   ALYDFTGENEDELSFKAGDIITELESIDEEWMSG--ELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y Y  Q+ DEL  + G   T  E   + GW KG     Q  G++P NYV P
Sbjct: 5   ALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQV-GLYPANYVEP 56

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGN 108
           A+Y    +  DEL  RRG + TV E+     +GW+        R G+ PGN
Sbjct: 4   ALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWL--CSLRGRQGIAPGN 52

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT-SQRTQRSGVFPGNYV 110
           A+Y Y+ ++ DEL   +G++     +   GW+KG    + Q    FP NYV
Sbjct: 4   ALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQH--YFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y  Q+ DEL  + G      E   + GW KG +      G++P NYV
Sbjct: 6   AVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGA-VGLYPANYV 55

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +A++ Y+ Q  ++L  R G    V     + W +G S    R G+FP  +V P
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSD--GRVGIFPKCFVVP 53

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
           K R +  +      EL LR G+++ + ++   DGW +G   R G  GLFP+S+
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSR-GEVGLFPSSY 52

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y    + E+     + I   +  D+GW+KGT    G  GLFPA++++
Sbjct: 9   YQGEGDDEISFDPQETITDIEMVDEGWWKGTCH--GHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y +K Q   EL  ++G    +  +    W++G  +   R G+FP +YV
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYV 52

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y+ ++  +L  ++G +  + +R  + W+ G     Q  G FP +YV
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQ--GFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           K R I  +    + EL  + GD+I +    D  W+KG   +   TGLFP++F+
Sbjct: 2   KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG--TGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y +  + + +L    G +  V       W+ G  +R    G+FP N+V
Sbjct: 4   AVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +L  + G+++ +  KR DGW+       G  GL P +++K
Sbjct: 15  DLSFKKGEVLRIISKRADGWWLAE-NSKGNRGLVPKTYLK 53

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
           Y    + E+ +RVGD I V +  D  GW  G +   G  GLFP S+
Sbjct: 8   YEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEIN--GVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y Y   +D+EL           E   D W+ G        G+FP NYV
Sbjct: 4   ALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECH--GSRGLFPSNYV 51

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
           E +A+Y ++  + DEL  ++G +  +     D  W+K   Q   R G  P NY+
Sbjct: 1   EAVALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQ--GREGYIPKNYI 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212829 cd11896, SH3_SNX33, Src Homology 3 domain of Sorting Nexin 33

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 61  AIYPYKPQKDDELELRRGS-VYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y ++ +  +E+ ++    +   +E   DGW +G + R +  G+FP +YV
Sbjct: 4   ALYSFQSENKEEINIQENEELVIFSENSLDGWLQGQNSRGET-GLFPASYV 53

SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX33 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGW 91
          Y A   Y+ QK+DEL +  G V  V ++  +GW
Sbjct: 2  YYATRAYEAQKEDELSVPAGVVVEVLQKSDNGW 34

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          L+  L C +C D  D    +  C HTFC  C+   +S+    +CP C
Sbjct: 23 LDTSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQP--KCPLC 66

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
             +Y Y+ Q+ DEL +  G    V E    DGW K  ++  +  G  P NY+
Sbjct: 5   KVLYSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGE-VGYVPENYL 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 115 FRCIVPYPPNSEYE--LELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASF 165
           F+    YP  S++E  L   VG LI V ++ D  WY G         + G+FP +F
Sbjct: 2   FKVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNF 57

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y    + E+     D+I   +  D+GW++G  +  G+ GLFPA++++
Sbjct: 8   YQAADDDEISFDPDDIITNIEMIDEGWWRGVCR--GKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           K R +  +   +E EL  + GD+I   +  D+ W  G L+  G++G+FP +F
Sbjct: 1   KARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELR--GKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           E  A + Y  + + EL  ++G   T+  +  D W++G  Q   + G+ P  Y+  
Sbjct: 1   EATAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRG--QLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           A A+F     Y   SE EL  + GD + ++++  D W++G L   G+ GL P  ++
Sbjct: 2   ATAQF----DYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLN--GQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212998 cd12065, SH3_GRAF2, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 2

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 121 YPPNSEY--ELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           YP  +E+  EL   VG +   V   R+ GW +GTL   G+ GL P ++++
Sbjct: 6   YPCEAEHSSELSFEVGAIFEDVTLSREPGWLEGTLN--GKRGLIPENYVE 53

GRAF2, also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA. It regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle, and is involved in alpha-catenin recruitment at cell-cell junctions. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +Y+ +  Y+ Q++ E+ L+ G V  V E+ + GW+  ++   +  G  P  Y+
Sbjct: 1   QYVVVSNYEKQENSEISLQAGEVVDVIEKNESGWWFVST--AEEQGWVPATYL 51

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT-QRSGVFPGNY 109
           A+Y  +   DDEL    G +  VT    D W++G  +    R GVFP ++
Sbjct: 4   ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + R +  Y      EL  + G+ L+ + ++ + GW KG L  +GR GL+PA++++
Sbjct: 3   RVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLL-SGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-----TGRTGLFPASF 165
           Y P +E EL ++  D++Y+ +K DD W+K  L+          GL PA++
Sbjct: 8   YEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +A++ Y+  + ++LE ++G V  V  +  + W +G  +   + G+FP  +V  
Sbjct: 3   VALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCK--GKIGIFPSAFVED 53

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +LE + GD+I V  K ++ W +G  Q  G+ G+FP++F++
Sbjct: 15  DLEFQKGDVILVLSKVNEDWLEG--QCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYV 110
           Y A+YP++ +  DE+    G +  V E+   + GW  G+ Q     G FP NYV
Sbjct: 4   YRALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNF--GWFPCNYV 55

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A + ++ +++DEL    G V T+ E   + W KG  +   + G+FP N+V
Sbjct: 3   VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKG--ELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           ++A+Y +K  + D+L+   G   TV +   + W++G  +  +++G FP N++
Sbjct: 2   FVALYRFKALEKDDLDFHPGERITVIDDSNEEWWRG--KIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG4226|consensus	379		99.89
KOG1029|consensus	1118		99.84
KOG4226|consensus	379		99.84
KOG4225|consensus	489		99.82
KOG4348|consensus	627		99.81
KOG4348|consensus	627		99.8
KOG2996|consensus	865		99.77
KOG1029|consensus	1118		99.7
KOG4792|consensus	293		99.67
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.59
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.58
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.49
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.46
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.44
KOG0823|consensus	230		99.39
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.38
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.38
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.37
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.35
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.34
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.3
PHA02929	238	N1R/p28-like protein; Provisional	99.29
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.28
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.26
KOG2070|consensus	661		99.26
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.25
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.25
KOG0317|consensus	293		99.24
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.22
PF14634	44	zf-RING_5: zinc-RING finger domain	99.21
KOG0320|consensus	187		99.21
KOG3601|consensus	222		99.2
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.19
KOG0287|consensus	442		99.18
PHA02926	242	zinc finger-like protein; Provisional	99.17
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.16
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.14
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.11
KOG2199|consensus	462		99.1
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	99.09
KOG3632|consensus	1335		99.09
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.08
KOG2546|consensus	483		99.06
KOG2070|consensus	661		99.05
KOG2164|consensus	513		99.02
KOG4628|consensus	348		98.98
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.98
KOG1118|consensus	366		98.98
KOG4225|consensus	489		98.98
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.97
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.96
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.95
KOG2199|consensus	462		98.94
KOG0162|consensus	1106		98.93
KOG2177|consensus	386		98.92
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.91
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.84
KOG1118|consensus	366		98.83
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.83
KOG0162|consensus	1106		98.78
KOG0311|consensus	381		98.73
KOG0978|consensus	698		98.71
KOG0824|consensus	324		98.71
KOG1264|consensus	1267		98.69
KOG2996|consensus	865		98.67
KOG0802|consensus	543		98.67
KOG1702|consensus	264		98.6
KOG4159|consensus	398		98.58
KOG2660|consensus	331		98.57
KOG2856|consensus	472		98.56
KOG2879|consensus	298		98.54
KOG1785|consensus	563		98.51
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.48
KOG1702|consensus	264		98.47
KOG4792|consensus	293		98.39
KOG0515|consensus	752		98.37
KOG2546|consensus	483		98.36
KOG3655|consensus	484		98.33
KOG3523|consensus	695		98.33
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.29
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.24
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.23
KOG2856|consensus	472		98.21
KOG1264|consensus	1267		98.2
KOG3875|consensus	362		98.17
KOG0297|consensus	391		98.17
KOG0804|consensus	493		98.16
KOG4172|consensus	62		98.16
KOG1734|consensus	328		98.14
KOG1843|consensus	473		98.11
COG5152	259	Uncharacterized conserved protein, contains RING a	98.08
KOG0515|consensus	752		98.07
KOG0828|consensus	636		98.06
KOG3523|consensus	695		98.03
KOG4278|consensus	1157		97.98
KOG4265|consensus	349		97.93
KOG3655|consensus	484		97.93
KOG3775|consensus	482		97.92
KOG1039|consensus	344		97.86
KOG3875|consensus	362		97.81
KOG4692|consensus	489		97.73
KOG1813|consensus	313		97.71
KOG1645|consensus	463		97.69
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.69
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.69
KOG4278|consensus	1157		97.68
KOG1002|consensus	791		97.68
KOG1493|consensus	84		97.66
KOG0827|consensus	465		97.64
KOG0825|consensus	1134		97.63
KOG4367|consensus	699		97.63
KOG4275|consensus	350		97.61
KOG3601|consensus	222		97.6
KOG1843|consensus	473		97.56
KOG1814|consensus	445		97.54
KOG4773|consensus	386		97.51
KOG3775|consensus	482		97.5
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	97.43
KOG1941|consensus	518		97.39
KOG2528|consensus	490		97.39
KOG2222|consensus	848		97.36
PHA02825	162	LAP/PHD finger-like protein; Provisional	97.32
KOG1001|consensus	674		97.28
KOG2817|consensus	394		97.26
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	97.26
KOG4185|consensus	296		97.18
KOG3632|consensus	1335		97.18
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	97.12
KOG2114|consensus	933		97.11
KOG2222|consensus	848		97.07
KOG0197|consensus	468		97.06
KOG0197|consensus	468		97.04
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	97.04
KOG4575|consensus	874		97.02
KOG3002|consensus	299		97.02
KOG3557|consensus	721		96.99
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.97
KOG2930|consensus	114		96.94
KOG3039|consensus	303		96.92
KOG1571|consensus	355		96.9
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.89
KOG1451|consensus	812		96.82
PHA02862	156	5L protein; Provisional	96.76
KOG4773|consensus	386		96.75
KOG3557|consensus	721		96.74
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.71
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	96.68
KOG2528|consensus	490		96.67
KOG3725|consensus	375		96.6
KOG3800|consensus	300		96.59
KOG4739|consensus	233		96.58
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.4
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	96.39
smart00287	63	SH3b Bacterial SH3 domain homologues.	96.36
KOG4575|consensus	874		96.27
PF04641	260	Rtf2: Rtf2 RING-finger	96.21
KOG0609|consensus	542		96.21
KOG0609|consensus	542		96.16
KOG1451|consensus	812		96.12
KOG3161|consensus	861		96.12
KOG1428|consensus	3738		96.09
KOG0199|consensus	1039		95.88
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	95.79
KOG1940|consensus	276		95.76
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.72
KOG4429|consensus	421		95.69
COG5109	396	Uncharacterized conserved protein, contains RING Z	95.66
KOG4362|consensus	684		95.58
KOG0826|consensus	357		95.49
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.42
KOG2932|consensus	389		95.35
PRK10884	206	SH3 domain-containing protein; Provisional	95.33
KOG1812|consensus	384		95.28
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.28
PHA03096	284	p28-like protein; Provisional	95.26
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.2
KOG3970|consensus	299		95.15
KOG1952|consensus	950		95.09
KOG4445|consensus	368		95.06
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	94.86
KOG3771|consensus	460		94.59
KOG0199|consensus	1039		94.55
KOG4429|consensus	421		94.54
KOG0298|consensus	1394		94.54
KOG3725|consensus	375		94.51
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	94.36
KOG3771|consensus	460		94.07
COG3103	205	SH3 domain protein [Signal transduction mechanisms	94.06
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.91
KOG3705|consensus	580		93.84
KOG2034|consensus	911		93.76
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.76
KOG0824|consensus	324		93.74
KOG1100|consensus	207		93.57
KOG3565|consensus	640		93.41
KOG3268|consensus	234		93.35
PRK13914	481	invasion associated secreted endopeptidase; Provis	93.17
KOG3705|consensus	580		93.07
COG3103	205	SH3 domain protein [Signal transduction mechanisms	92.7
KOG3039|consensus	303		92.62
KOG3565|consensus	640		92.39
KOG1815|consensus	444		92.3
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	91.58
smart00287	63	SH3b Bacterial SH3 domain homologues.	91.57
KOG3579|consensus	352		91.1
KOG4718|consensus	235		90.99
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	90.54
KOG3812|consensus	475		90.16
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	89.88
PRK10884	206	SH3 domain-containing protein; Provisional	89.27
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	88.13
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	87.53
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	87.35
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	87.23
KOG3812|consensus	475		86.45
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	86.34
KOG4185|consensus	296		86.28
KOG0040|consensus	2399		85.35
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	85.05
PF06844	68	DUF1244: Protein of unknown function (DUF1244); In	84.72
PF12913	54	SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.	84.6
PLN02189	1040	cellulose synthase	84.42
KOG2979|consensus	262		84.01
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	83.61
KOG2169|consensus	636		83.47
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	83.32
KOG0309|consensus	1081		83.11
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	83.04
KOG0825|consensus	1134		82.99
PLN02436	1094	cellulose synthase A	82.92
PF05502	483	Dynactin_p62: Dynactin p62 family; InterPro: IPR00	82.28
COG3807	171	Uncharacterized protein conserved in bacteria [Fun	81.04
smart00743	61	Agenet Tudor-like domain present in plant sequence	80.53
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	80.34
PF10497	105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	80.06

>KOG4226|consensus

Probab=99.89  E-value=1.3e-23  Score=143.05  Aligned_cols=108  Identities=28%  Similarity=0.622  Sum_probs=97.3

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc------------------------
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK------------------------  114 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~------------------------  114 (173)
                      +.+.|.|.++.++||++.+|+.+.|+++..+|||+|..  .|+.||||++|+++..                        
T Consensus       110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~  187 (379)
T KOG4226|consen  110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQG  187 (379)
T ss_pred             eEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceehhccccccCCccceecchhhcccCCCC
Confidence            56678899999999999999999999999999999995  4999999999998641                        


Q ss_pred             ------ceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 ------FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ------~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                            +.++|+|.+.+.+||+|++||.+.++.+.  ++.||.++.. .|++|+||.+||..+
T Consensus       188 s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl  249 (379)
T KOG4226|consen  188 SRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVL  249 (379)
T ss_pred             ceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEe
Confidence                  45789999999999999999999998865  6789999987 899999999999875

>KOG1029|consensus

Probab=99.84  E-value=6.6e-22  Score=150.89  Aligned_cols=109  Identities=27%  Similarity=0.610  Sum_probs=98.8

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCc---cCcCCCccccCC---------------cceeccc
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR---SGVFPGNYVAPA---------------KFRCIVP  120 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~---~G~~p~~~v~~~---------------~~~~~~~  120 (173)
                      +.++.+|.+..+..|++..|++|.|.++...|||.|+....|+   .||||.+||+.+               ++.++||
T Consensus       982 AqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYd 1061 (1118)
T KOG1029|consen  982 AQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYD 1061 (1118)
T ss_pred             hhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeec
Confidence            5567899999999999999999999999999999999877664   499999999865               2558999


Q ss_pred             CCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       121 ~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      |.+++++||+|++|++|.|+.+.++.||.|...  |++|+||+|||.+.
T Consensus      1062 Y~AqndDELsF~kgdiI~VlnkdepeWW~Ge~n--g~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1062 YEAQNDDELSFKKGDIINVLNKDEPEWWSGERN--GKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             cccCCcccccccCCCEEEecCCCChhhhccccc--CccccCcccccccc
Confidence            999999999999999999999999999999998  99999999999653

>KOG4226|consensus

Probab=99.84  E-value=7.2e-21  Score=129.77  Aligned_cols=108  Identities=27%  Similarity=0.598  Sum_probs=95.6

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-----------------------
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-----------------------  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-----------------------  114 (173)
                      ..+|.++|.++...+|.+++++.+.+++. ...||+.+ ++.++.||+|++||+...                       
T Consensus         6 ~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvr-ns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~   83 (379)
T KOG4226|consen    6 IVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVR-NSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKT   83 (379)
T ss_pred             EEEEEechhcccchhccccccceEEEEcC-Cccceeee-cccccCCcccchhhhcccchhhhHHHHhhhhccccccccCC
Confidence            35688999999999999999999987775 56799999 578999999999998531                       


Q ss_pred             --------------------------ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 --------------------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 --------------------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                                                +.+.+.|.++.++||+|.+|..|.|.++..+|||+|...  |+.||||++||.+
T Consensus        84 s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~n--g~VGWFPSNYv~E  161 (379)
T KOG4226|consen   84 SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYN--GQVGWFPSNYVTE  161 (379)
T ss_pred             CccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccC--Ceeccccccceeh
Confidence                                      455678999999999999999999999999999999997  9999999999987


Q ss_pred             e
Q psy9669         169 S  169 (173)
Q Consensus       169 ~  169 (173)
                      .
T Consensus       162 ~  162 (379)
T KOG4226|consen  162 E  162 (379)
T ss_pred             h
Confidence            4

>KOG4225|consensus

Probab=99.82  E-value=2.9e-20  Score=134.05  Aligned_cols=110  Identities=36%  Similarity=0.787  Sum_probs=102.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc----------------------
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK----------------------  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~----------------------  114 (173)
                      ..++++|+|.++...||.|.+||+|.|+.+.+..|+.|+.+  |+.|+||.+||+.+.                      
T Consensus       231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhh--Gr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~  308 (489)
T KOG4225|consen  231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHH--GRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAI  308 (489)
T ss_pred             chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeec--ceecceechheeecCcccccCcCCCCccccccccccc
Confidence            34789999999999999999999999999999999999966  999999999998541                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy9669         115 --------------------------------------------------------------------------------  114 (173)
Q Consensus       115 --------------------------------------------------------------------------------  114 (173)
                                                                                                      
T Consensus       309 A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~  388 (489)
T KOG4225|consen  309 AKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPL  388 (489)
T ss_pred             ccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhccc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------ceecccCCCCCCcceeecCCCEEEEEEcCCCCee
Q psy9669         115 ----------------------------------------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWY  148 (173)
Q Consensus       115 ----------------------------------------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~  148 (173)
                                                                    ++++|.|.+++++||.|.+||+|.|.++.++||+
T Consensus       389 ~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWf  468 (489)
T KOG4225|consen  389 SEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWF  468 (489)
T ss_pred             ccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccCcce
Confidence                                                          5788999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEecCCCeEE
Q psy9669         149 KGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       149 ~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .|+..++|+.|.||.+||+.
T Consensus       469 vGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  469 VGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             eccceecccccccCcccccc
Confidence            99888889999999999975

>KOG4348|consensus

Probab=99.81  E-value=5.8e-21  Score=137.75  Aligned_cols=110  Identities=35%  Similarity=0.789  Sum_probs=98.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc---------------------
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK---------------------  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~---------------------  114 (173)
                      -..+++.|.|.++..++|.|..||+|.++....+|||.|..+  |+.|+||+|+|..+.                     
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Ln--gk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlag  177 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLN--GKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAG  177 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceec--CcccccchhhceecCCCCcchhhhcCcccchhhhcC
Confidence            345788999999999999999999999999999999999977  999999999998641                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy9669         115 --------------------------------------------------------------------------------  114 (173)
Q Consensus       115 --------------------------------------------------------------------------------  114 (173)
                                                                                                      
T Consensus       178 st~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~  257 (627)
T KOG4348|consen  178 STARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAET  257 (627)
T ss_pred             cCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccc
Confidence                                                                                            


Q ss_pred             ------ceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 ------FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ------~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                            +++.+.|.+++++||.+++||++.++.+.  +.|||.|...  |+.|.||.|||+.+
T Consensus       258 tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELn--Gk~GvFPDNFv~lv  318 (627)
T KOG4348|consen  258 TKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELN--GKKGVFPDNFVELV  318 (627)
T ss_pred             hhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeec--CccccCCchhhhhc
Confidence                  56678899999999999999999988765  5699999998  99999999998754

>KOG4348|consensus

Probab=99.80  E-value=4.2e-21  Score=138.45  Aligned_cols=109  Identities=38%  Similarity=0.826  Sum_probs=99.1

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-----------------------
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-----------------------  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-----------------------  114 (173)
                      .+++.|+|.++..++|.+..|++|..+.+.++|||.|+.|  |++|.||.++|.+.+                       
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egeln--grrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~   80 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELN--GRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSR   80 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceec--cccccCCchhhhhhhhhcccccccccccccchhhcccC
Confidence            4678899999999999999999999888889999999976  999999999987531                       


Q ss_pred             ----------------------ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 ----------------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ----------------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                                            +.+.|.|.+++++||.|+.||+|.++.++..|||.|...  |+.|.||+|||.+..
T Consensus        81 n~l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Ln--gk~GmFPsNFVkel~  156 (627)
T KOG4348|consen   81 NPLTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLN--GKVGMFPSNFVKELP  156 (627)
T ss_pred             CCccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceec--CcccccchhhceecC
Confidence                                  556788999999999999999999999999999999998  999999999998753

>KOG2996|consensus

Probab=99.77  E-value=6.3e-19  Score=131.47  Aligned_cols=164  Identities=24%  Similarity=0.494  Sum_probs=120.1

Q ss_pred             cccCCccccccccc----cCCCeeecCCCCCChhhHHHHHhccc-------------------ccCCCCCCCCCceeecc
Q psy9669           6 LNDLLECSVCLDRL----DTSSKVLPCQHTFCKKCLEEIVSSHK-------------------ELRCPECPTFVPEYIAI   62 (173)
Q Consensus         6 ~~~~~~C~iC~~~~----~~~~~~~~Cgh~fc~~Cl~~~~~~~~-------------------~~~CP~Cr~~i~~~~~~   62 (173)
                      ++.-..|.+|++++    ++.+.+..||-..++.|+.+.-....                   .+.----+..++...++
T Consensus       531 F~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~cgr~~q~~~Gt~k~~~k~~~~~r~t~~rn~~GLpkm~~v  610 (865)
T KOG2996|consen  531 FKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPPCGRYLQFAKGTRKEVIKMTGHNRFTNKRNRPGLPKMDVV  610 (865)
T ss_pred             ccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCCcccccccCCcchhhhhhhcCccccccccCCCCCcchhhh
Confidence            45678999999875    47889999999999999965432100                   00000001122334444


Q ss_pred             CCCCC------CCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCCc---------------------
Q psy9669          63 YPYKP------QKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPAK---------------------  114 (173)
Q Consensus        63 ~~~~~------~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~~---------------------  114 (173)
                      ..|.+      .....+.+..|+++.++..+ ...||.|+.-.++..|+||++.|.+..                     
T Consensus       611 q~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG  690 (865)
T KOG2996|consen  611 QNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAG  690 (865)
T ss_pred             hccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcc
Confidence            44433      22244778899999877654 456999998778899999999887641                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy9669         115 --------------------------------------------------------------------------------  114 (173)
Q Consensus       115 --------------------------------------------------------------------------------  114 (173)
                                                                                                      
T Consensus       691 ~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyYq~~sLke~F  770 (865)
T KOG2996|consen  691 EMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYYQSHSLKEIF  770 (865)
T ss_pred             hHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHHHhccHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------ceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCC
Q psy9669         115 -------------------------------------FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRT  155 (173)
Q Consensus       115 -------------------------------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~  155 (173)
                                                           +++.|+|.+....+|+|++||+|.++.+.  +.|||+|...  
T Consensus       771 k~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevn--  848 (865)
T KOG2996|consen  771 KALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVN--  848 (865)
T ss_pred             HHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceec--
Confidence                                                 45668888888899999999999998876  5799999998  


Q ss_pred             CcEEEecCCCeEEecc
Q psy9669         156 GRTGLFPASFMKQSDF  171 (173)
Q Consensus       156 g~~G~~P~~~v~~~~~  171 (173)
                      |+.||||.+||++.+.
T Consensus       849 grvGwFPstYVee~~~  864 (865)
T KOG2996|consen  849 GRVGWFPSTYVEEDDP  864 (865)
T ss_pred             CcccccccccccccCC
Confidence            9999999999998765

>KOG1029|consensus

Probab=99.70  E-value=7.8e-18  Score=128.99  Aligned_cols=111  Identities=31%  Similarity=0.661  Sum_probs=94.8

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCCc-------------------
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPAK-------------------  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~~-------------------  114 (173)
                      +-.++|+|+|.+...++++|..||+|.|...  ..+||..|..  .|+.||||.+|++.+.                   
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel--~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~  770 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL--RGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMT  770 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCccccccee--ccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCC
Confidence            4468899999999999999999999987765  4678999995  4999999999998531                   


Q ss_pred             ---------------------------------------------ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeE
Q psy9669         115 ---------------------------------------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYK  149 (173)
Q Consensus       115 ---------------------------------------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~  149 (173)
                                                                   +.+.|.+.+...+.|+|.+||+|.|+++. .-||.
T Consensus       771 psas~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~Vlekq-emwW~  849 (1118)
T KOG1029|consen  771 PSASVNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWF  849 (1118)
T ss_pred             cccccccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehhc-cceec
Confidence                                                         34567888888999999999999999984 55889


Q ss_pred             EEeCCCCcEEEecCCCeEEecc
Q psy9669         150 GTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       150 ~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      |...  |..||||.+||++++.
T Consensus       850 G~v~--g~~GwFPksYVk~~~~  869 (1118)
T KOG1029|consen  850 GEVA--GEIGWFPKSYVKEVGA  869 (1118)
T ss_pred             cccc--CccCcCcHHhhhhccc
Confidence            9887  9999999999997654

>KOG4792|consensus

Probab=99.67  E-value=7.7e-17  Score=107.39  Aligned_cols=122  Identities=25%  Similarity=0.536  Sum_probs=99.2

Q ss_pred             cCCCCCCCCC----------ce-eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-
Q psy9669          47 LRCPECPTFV----------PE-YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-  114 (173)
Q Consensus        47 ~~CP~Cr~~i----------~~-~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-  114 (173)
                      +.=|.||...          .. ..++++|.+...++|.|++|+++.|+++.++.||..+ ++.|+.|++|..||+.+. 
T Consensus       104 Li~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Ar-ns~Gk~GmIPvpYVe~~~~  182 (293)
T KOG4792|consen  104 LIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNAR-NSEGKRGMIPVPYVEKYRP  182 (293)
T ss_pred             ccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhh-ccCCcccceechHHHhhhh
Confidence            3457777544          12 3468999999999999999999999999999999999 588999999999998541 


Q ss_pred             -----------------------------------------------ceecccCCCCCC--cceeecCCCEEEEEEcCCC
Q psy9669         115 -----------------------------------------------FRCIVPYPPNSE--YELELRVGDLIYVHKKRDD  145 (173)
Q Consensus       115 -----------------------------------------------~~~~~~~~~~~~--~el~~~~g~~v~v~~~~~~  145 (173)
                                                                     +++.++..+...  ..|.++.|++|.|.+...+
T Consensus       183 ~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~nin  262 (293)
T KOG4792|consen  183 ASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNIN  262 (293)
T ss_pred             hhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccC
Confidence                                                           233333333332  3689999999999999999


Q ss_pred             CeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         146 GWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       146 ~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      |.|.++..  |+.|.||.+||+..+.
T Consensus       263 GqwegEln--Gk~G~fPfThvrf~d~  286 (293)
T KOG4792|consen  263 GQWEGELN--GKIGHFPFTHVRFTDV  286 (293)
T ss_pred             ceeeeeec--CccccccceeEEeecc
Confidence            99999998  9999999999987654

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.59  E-value=2.9e-15  Score=78.69  Aligned_cols=49  Identities=43%  Similarity=0.847  Sum_probs=43.5

Q ss_pred             ecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       117 ~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ++++|.++.++||+|++||+|.++.+.+++||.++..  |+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNT--GRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEET--TEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEEC--CEEEEECHHhCC
Confidence            4689999999999999999999999989999999975  999999999985

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.58  E-value=7.5e-16  Score=77.92  Aligned_cols=40  Identities=43%  Similarity=1.152  Sum_probs=31.4

Q ss_pred             cccccccccCCCeeecCCCCCChhhHHHHHhcccc--cCCCCC
Q psy9669          12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE--LRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~--~~CP~C   52 (173)
                      ||||+++| .+|+.++|||+||+.||.++......  +.||.|
T Consensus         1 CpiC~~~~-~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLF-KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB--SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhh-CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999 89999999999999999999886433  579987

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.49  E-value=1.6e-14  Score=95.30  Aligned_cols=52  Identities=29%  Similarity=0.731  Sum_probs=43.9

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhc--------------ccccCCCCCCCCCce
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--------------HKELRCPECPTFVPE   58 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~--------------~~~~~CP~Cr~~i~~   58 (173)
                      ..++++|+||++.+ ..++++.|||.||..||..|+..              .+..+||+||..+..
T Consensus        15 ~~~~~~CpICld~~-~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         15 SGGDFDCNICLDQV-RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCCccCCccCCCcC-CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            45789999999999 89999999999999999999752              124689999988754

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.46  E-value=8.7e-14  Score=73.04  Aligned_cols=49  Identities=49%  Similarity=0.994  Sum_probs=43.5

Q ss_pred             ccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc
Q psy9669          61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        61 ~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      |+++|.++..++|+|.+||.+.++.+.+++||.++.  +|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence            578999999999999999999999999999999995  7999999999974

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.44  E-value=2.2e-13  Score=73.61  Aligned_cols=53  Identities=40%  Similarity=0.805  Sum_probs=45.7

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEE-EcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~-~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++.+|.+..+++|++.+||+|.++ +...++||.++..  |+.||||.++|+++
T Consensus         2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~--g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENN--GRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEET--TEEEEEEGGGEEEH
T ss_pred             EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEEC--CcEEEEcHHHEEEC
Confidence            46788999999999999999999999 7777899999995  99999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG0823|consensus

Probab=99.39  E-value=2.2e-13  Score=91.62  Aligned_cols=54  Identities=28%  Similarity=0.660  Sum_probs=46.2

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcc-cccCCCCCCCCCceeec
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVPEYIA   61 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~~i~~~~~   61 (173)
                      ...+.|-||++.- ++|+++.|||.||..||.+|++.+ +...||+|++.+....+
T Consensus        45 ~~~FdCNICLd~a-kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   45 GGFFDCNICLDLA-KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCceeeeeecccc-CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            5679999999999 899999999999999999999954 33568999988876443

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.38  E-value=9.6e-13  Score=69.02  Aligned_cols=48  Identities=35%  Similarity=0.693  Sum_probs=43.5

Q ss_pred             eecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecC
Q psy9669         116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA  163 (173)
Q Consensus       116 ~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~  163 (173)
                      +++++|.+...++|++++||.+.|++..+++||.++...+++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            478999999999999999999999999999999999996789999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.38  E-value=9.2e-14  Score=71.52  Aligned_cols=41  Identities=34%  Similarity=0.966  Sum_probs=35.1

Q ss_pred             cccccccccc--CCCeeecCCCCCChhhHHHHHhcccccCCCCCC
Q psy9669          11 ECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus        11 ~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      +|+||++.+.  ...+.++|||.||.+||.+|+..+  .+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence            6999999884  577889999999999999999875  4899996

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.37  E-value=1.6e-13  Score=68.64  Aligned_cols=38  Identities=45%  Similarity=1.226  Sum_probs=31.7

Q ss_pred             cccccccccCCC-eeecCCCCCChhhHHHHHhcccccCCCCC
Q psy9669          12 CSVCLDRLDTSS-KVLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~~~-~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~C   52 (173)
                      |+||++.+ ..+ +.++|||.||.+|+.+|+..+  .+||+|
T Consensus         1 C~iC~~~~-~~~~~~~~CGH~fC~~C~~~~~~~~--~~CP~C   39 (39)
T PF13923_consen    1 CPICLDEL-RDPVVVTPCGHSFCKECIEKYLEKN--PKCPVC   39 (39)
T ss_dssp             ETTTTSB--SSEEEECTTSEEEEHHHHHHHHHCT--SB-TTT
T ss_pred             CCCCCCcc-cCcCEECCCCCchhHHHHHHHHHCc--CCCcCC
Confidence            89999999 556 789999999999999999873  689987

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.35  E-value=2.8e-13  Score=68.70  Aligned_cols=40  Identities=35%  Similarity=1.131  Sum_probs=35.3

Q ss_pred             cccccccccCCCe-eecCCCCCChhhHHHHHhcccccCCCCC
Q psy9669          12 CSVCLDRLDTSSK-VLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~~~~-~~~Cgh~fc~~Cl~~~~~~~~~~~CP~C   52 (173)
                      |+||.+.+ ..+. +++|||.||..|+.+|+...+...||+|
T Consensus         1 C~iC~~~~-~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPF-EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBC-SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccc-cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999 5665 9999999999999999996566789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.34  E-value=4.8e-13  Score=70.74  Aligned_cols=47  Identities=30%  Similarity=0.866  Sum_probs=39.0

Q ss_pred             cCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++..|.||++.. ..+.+++|||. ||..|+.+++..  ...||+||.++.
T Consensus         1 ~~~~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENP-RDVVLLPCGHLCFCEECAERLLKR--KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSB-SSEEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-S
T ss_pred             CcCCCccCCccC-CceEEeCCCChHHHHHHhHHhccc--CCCCCcCChhhc
Confidence            357899999998 78999999999 999999999984  357999998764

...

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.30  E-value=5.7e-13  Score=67.25  Aligned_cols=38  Identities=37%  Similarity=1.125  Sum_probs=23.3

Q ss_pred             ccccccccc---CCCeeecCCCCCChhhHHHHHhcc--cccCCC
Q psy9669          12 CSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSH--KELRCP   50 (173)
Q Consensus        12 C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~~~--~~~~CP   50 (173)
                      ||||.+ +.   ++|+.++|||+||.+||+++...+  +.++||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 62   358999999999999999999854  467887

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.29  E-value=2.8e-12  Score=88.31  Aligned_cols=49  Identities=24%  Similarity=0.672  Sum_probs=39.5

Q ss_pred             ccCCccccccccccCC-------CeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~-------~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++.+|+||++.+..+       +++.+|+|.||..||.+|+...  .+||+||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~--~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK--NTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC--CCCCCCCCEee
Confidence            4578999999976433       2566899999999999999854  47999997664

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.28  E-value=4.2e-12  Score=66.55  Aligned_cols=48  Identities=31%  Similarity=0.720  Sum_probs=43.7

Q ss_pred             eccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCC
Q psy9669          60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG  107 (173)
Q Consensus        60 ~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~  107 (173)
                      +|+|+|.+...++|++.+||.+.|+++.+.+||.++...+++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            478999999999999999999999999999999999877789999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.26  E-value=3.2e-12  Score=94.06  Aligned_cols=51  Identities=29%  Similarity=0.760  Sum_probs=45.1

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+++.+.|+||.+.+ ..|++++|||.||..||.+++...  ..||.|+..+.
T Consensus        21 ~~Le~~l~C~IC~d~~-~~PvitpCgH~FCs~CI~~~l~~~--~~CP~Cr~~~~   71 (397)
T TIGR00599        21 YPLDTSLRCHICKDFF-DVPVLTSCSHTFCSLCIRRCLSNQ--PKCPLCRAEDQ   71 (397)
T ss_pred             cccccccCCCcCchhh-hCccCCCCCCchhHHHHHHHHhCC--CCCCCCCCccc
Confidence            6788999999999999 788899999999999999999764  37999997665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2070|consensus

Probab=99.26  E-value=1.8e-12  Score=95.70  Aligned_cols=57  Identities=33%  Similarity=0.734  Sum_probs=52.8

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++.+++.+.|...+.+||+|.+||+|.|....++|||.|+..  |++||||.+||.++.
T Consensus        17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTln--g~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLN--GRTGWFPSNYVREIK   73 (661)
T ss_pred             ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceecccc--CccCccchHHHHHHh
Confidence            456788999999999999999999999999999999999998  999999999998764

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.25  E-value=5.9e-12  Score=67.97  Aligned_cols=52  Identities=40%  Similarity=0.825  Sum_probs=45.2

Q ss_pred             eeccCCCCCCCccccceecCCEEEEE-EEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~-~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ++++.+|.+..+++|++.+||++.|+ +...++||.++.  .|+.||||.+++++
T Consensus         2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEE
Confidence            57889999999999999999999999 788889999996  69999999999864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>smart00504 Ubox Modified RING finger domain

Probab=99.25  E-value=7.4e-12  Score=69.63  Aligned_cols=46  Identities=17%  Similarity=0.333  Sum_probs=40.3

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++.||||.+.+ ..|+.++|||+||+.||.+|+..  ...||.|+..+.
T Consensus         1 ~~~Cpi~~~~~-~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~   46 (63)
T smart00504        1 EFLCPISLEVM-KDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT   46 (63)
T ss_pred             CcCCcCCCCcC-CCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence            47899999999 78899999999999999999986  357999997663

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0317|consensus

Probab=99.24  E-value=3e-12  Score=88.67  Aligned_cols=48  Identities=31%  Similarity=0.765  Sum_probs=42.3

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++...|.+|++.. ..|..++|||.||.+||.+|.....  .||+||..+.
T Consensus       237 ~a~~kC~LCLe~~-~~pSaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~  284 (293)
T KOG0317|consen  237 EATRKCSLCLENR-SNPSATPCGHIFCWSCILEWCSEKA--ECPLCREKFQ  284 (293)
T ss_pred             CCCCceEEEecCC-CCCCcCcCcchHHHHHHHHHHcccc--CCCcccccCC
Confidence            4668999999999 8999999999999999999998654  5999997653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.22  E-value=1e-11  Score=64.14  Aligned_cols=44  Identities=36%  Similarity=0.989  Sum_probs=34.9

Q ss_pred             ccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCC
Q psy9669          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTF   55 (173)
Q Consensus        11 ~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~   55 (173)
                      +|+||.+.+.....+.+|||.||..|+.+|+.. ...+||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            599999988434444459999999999999986 34579999864

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.21  E-value=9.3e-12  Score=63.85  Aligned_cols=42  Identities=31%  Similarity=1.050  Sum_probs=35.5

Q ss_pred             ccccccccc--cCCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669          11 ECSVCLDRL--DTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus        11 ~C~iC~~~~--~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      .|++|.+.+  ...+.+++|||+||..|+....  .....||+|+.
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            489999988  3578999999999999999988  34468999973

>KOG0320|consensus

Probab=99.21  E-value=6.3e-12  Score=81.14  Aligned_cols=49  Identities=24%  Similarity=0.826  Sum_probs=40.0

Q ss_pred             cccCCccccccccccCC-CeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           6 LNDLLECSVCLDRLDTS-SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~-~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      -++.+.||||++.+.+. ++-+.|||.||+.||++.+....  .||+|+..+
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~--~CP~C~kkI  177 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN--KCPTCRKKI  177 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC--CCCCccccc
Confidence            34668999999988544 46689999999999999998654  699999644

>KOG3601|consensus

Probab=99.20  E-value=7.4e-12  Score=83.06  Aligned_cols=109  Identities=25%  Similarity=0.474  Sum_probs=89.5

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCC-CEEEEEeCCCCccCcCCCccccCCc-----------------------
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPAK-----------------------  114 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~~~~G~~p~~~v~~~~-----------------------  114 (173)
                      +++++++.+...+||+|.+|+.+.+++..+. .|...+  ..|..|++|.+++....                       
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ae--l~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G   80 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAE--LDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDG   80 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHh--hcCccccCcccccccccccceecccccchhhhhhhccCcc
Confidence            4567888899999999999999988887544 577777  45889999999883200                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy9669         115 --------------------------------------------------------------------------------  114 (173)
Q Consensus       115 --------------------------------------------------------------------------------  114 (173)
                                                                                                      
T Consensus        81 ~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~  160 (222)
T KOG3601|consen   81 DFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPA  160 (222)
T ss_pred             hhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCC
Confidence                                                                                            


Q ss_pred             -----ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         115 -----FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       115 -----~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                           ..+.+++.+..+.++.+++|+.+.+....+.-||.|...  |+.|+||++|+...++
T Consensus       161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~l--g~agiFpagyv~p~d~  220 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKL--GRAGIFPAGYVAPSDL  220 (222)
T ss_pred             ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcccc--CceeeecCcccccccc
Confidence                 123466777778899999999999999999999999998  9999999999988765

>smart00326 SH3 Src homology 3 domains

Probab=99.19  E-value=6.9e-11  Score=64.36  Aligned_cols=53  Identities=40%  Similarity=0.866  Sum_probs=48.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++|.+....+|++++||.+.+.....++||.++.. +++.|+||.+|++.
T Consensus         5 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~~   57 (58)
T smart00326        5 VRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLG-RGKEGLFPSNYVEE   57 (58)
T ss_pred             EEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeC-CCCEEEEchHHEEE
Confidence            578889999999999999999999999888999999987 49999999999975

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG0287|consensus

Probab=99.18  E-value=4e-12  Score=89.80  Aligned_cols=50  Identities=38%  Similarity=0.962  Sum_probs=44.7

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .+++.+.|.||+++| +-|++++|+|+||.-||+.++..+  ..||.|+..+.
T Consensus        19 ~lD~lLRC~IC~eyf-~ip~itpCsHtfCSlCIR~~L~~~--p~CP~C~~~~~   68 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYF-NIPMITPCSHTFCSLCIRKFLSYK--PQCPTCCVTVT   68 (442)
T ss_pred             hhHHHHHHhHHHHHh-cCceeccccchHHHHHHHHHhccC--CCCCceecccc
Confidence            467889999999999 899999999999999999999854  57999997665

>PHA02926 zinc finger-like protein; Provisional

Probab=99.17  E-value=1.7e-11  Score=82.07  Aligned_cols=53  Identities=23%  Similarity=0.600  Sum_probs=41.0

Q ss_pred             hcccCCccccccccccCC--------CeeecCCCCCChhhHHHHHhccc----ccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTS--------SKVLPCQHTFCKKCLEEIVSSHK----ELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~--------~~~~~Cgh~fc~~Cl~~~~~~~~----~~~CP~Cr~~i~   57 (173)
                      ..+++.+|+||++....+        ..+.+|+|.||..||..|.....    ...||+||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            346789999999876332        46779999999999999997531    346999997664

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.16  E-value=1.1e-10  Score=62.59  Aligned_cols=52  Identities=38%  Similarity=0.836  Sum_probs=46.3

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ++++++|.+...++|++.+||.+.+++...++||.++.. .++.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence            467889999999999999999999999888899999987 3399999999986

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.14  E-value=1.4e-11  Score=66.34  Aligned_cols=47  Identities=38%  Similarity=0.906  Sum_probs=27.2

Q ss_pred             hhcccCCccccccccccCCC-eeecCCCCCChhhHHHHHhcccccCCCCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSS-KVLPCQHTFCKKCLEEIVSSHKELRCPECPTF   55 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~-~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~   55 (173)
                      +.+++.+.|++|.++| +.| .+..|.|.||..|+..-+..    .||+|..+
T Consensus         2 ~~le~lLrCs~C~~~l-~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~P   49 (65)
T PF14835_consen    2 ERLEELLRCSICFDIL-KEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTP   49 (65)
T ss_dssp             HHHHHTTS-SSS-S---SS-B---SSS--B-TTTGGGGTTT----B-SSS--B
T ss_pred             hHHHHhcCCcHHHHHh-cCCceeccCccHHHHHHhHHhcCC----CCCCcCCh
Confidence            5678899999999999 566 56789999999999886553    49999854

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.11  E-value=3.5e-11  Score=68.47  Aligned_cols=41  Identities=27%  Similarity=0.776  Sum_probs=32.2

Q ss_pred             cccccccccc------------CCCeeecCCCCCChhhHHHHHhcccccCCCCCC
Q psy9669          11 ECSVCLDRLD------------TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus        11 ~C~iC~~~~~------------~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      .|+||++.+.            .......|||.||..||.+|+..+.  +||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence            4999999882            1225568999999999999998654  799997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2199|consensus

Probab=99.10  E-value=2.5e-11  Score=87.56  Aligned_cols=56  Identities=30%  Similarity=0.644  Sum_probs=51.6

Q ss_pred             cCCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       111 ~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ...+++++|||++...+||+|++||||.|++..+..||+|+..  +..|+||.+||..
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~--~~~GlFPsnfVT~  269 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENH--RGIGLFPSNFVTA  269 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccC--Ccccccchhhhhh
Confidence            3446899999999999999999999999999999999999998  8899999999975

>smart00184 RING Ring finger

Probab=99.09  E-value=7.6e-11  Score=58.81  Aligned_cols=39  Identities=44%  Similarity=1.152  Sum_probs=33.9

Q ss_pred             cccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCC
Q psy9669          12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~C   52 (173)
                      |+||++.. ..+..++|||.||..|+.+|+.. ....||+|
T Consensus         1 C~iC~~~~-~~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL-KDPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC   39 (39)
T ss_pred             CCcCccCC-CCcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence            89999987 79999999999999999999883 33579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG3632|consensus

Probab=99.09  E-value=2e-10  Score=91.17  Aligned_cols=109  Identities=36%  Similarity=0.713  Sum_probs=87.0

Q ss_pred             ceeeccCCCCCC--------CccccceecCCEEEEEE-EcCCCEEEEEeCCCCccCcCCCccccCCc-------------
Q psy9669          57 PEYIAIYPYKPQ--------KDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAPAK-------------  114 (173)
Q Consensus        57 ~~~~~~~~~~~~--------~~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-------------  114 (173)
                      ..++|++||++.        ...||.|.+|++|.|.. ++.+|++.|+.+  ++.|+||.|+|.+..             
T Consensus      1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~n--gr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELN--GRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred             eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccc--cccccccccccccccCCcHHHHHHHHhc
Confidence            357889999863        45689999999998776 567789999965  899999999998751             


Q ss_pred             ------------------------------ceecccCCCCC-------CcceeecCCCEEEEEEcC-CCCeeEEEeCCCC
Q psy9669         115 ------------------------------FRCIVPYPPNS-------EYELELRVGDLIYVHKKR-DDGWYKGTLQRTG  156 (173)
Q Consensus       115 ------------------------------~~~~~~~~~~~-------~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g  156 (173)
                                                    .++.+||.++.       ..+|.|..|+||.|.++. ++|++.|.+.  |
T Consensus      1217 ~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGeln--g 1294 (1335)
T KOG3632|consen 1217 LLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELN--G 1294 (1335)
T ss_pred             cCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccC--C
Confidence                                          22345666543       248999999999998876 5689999998  9


Q ss_pred             cEEEecCCCeEEe
Q psy9669         157 RTGLFPASFMKQS  169 (173)
Q Consensus       157 ~~G~~P~~~v~~~  169 (173)
                      +.|+||.++++..
T Consensus      1295 qkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1295 QKGLVPSNFLEAP 1307 (1335)
T ss_pred             ccCccccccccCC
Confidence            9999999998764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.08  E-value=3.6e-11  Score=83.41  Aligned_cols=50  Identities=28%  Similarity=0.662  Sum_probs=43.9

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .|+..+.|.||.+.+ .-|..++|||+||.-||++++..+  .-||+||.+..
T Consensus        21 ~LDs~lrC~IC~~~i-~ip~~TtCgHtFCslCIR~hL~~q--p~CP~Cr~~~~   70 (391)
T COG5432          21 GLDSMLRCRICDCRI-SIPCETTCGHTFCSLCIRRHLGTQ--PFCPVCREDPC   70 (391)
T ss_pred             cchhHHHhhhhhhee-ecceecccccchhHHHHHHHhcCC--CCCccccccHH
Confidence            466788999999999 899999999999999999999865  46999997654

>KOG2546|consensus

Probab=99.06  E-value=7.5e-11  Score=85.74  Aligned_cols=67  Identities=36%  Similarity=0.733  Sum_probs=60.5

Q ss_pred             ccCcCCCccccCCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         101 RSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       101 ~~G~~p~~~v~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..||.|.+|++  +++++|||.+...+||+|.+|.++.++++.++|||.+...  |.+|+||.+||+++..
T Consensus       414 sp~w~p~syLE--kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~--~VTglFpgnyve~~~~  480 (483)
T KOG2546|consen  414 SPAWVPTSYLE--KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQD--GVTGLFPGNYVEPLKA  480 (483)
T ss_pred             CcccccHHHHH--HHHhhcccccccccccccccccEEEEEEecCCcchhheec--CcceeccCcccccccc
Confidence            35899999985  4588999999999999999999999999999999999987  9999999999998753

>KOG2070|consensus

Probab=99.05  E-value=1e-10  Score=86.68  Aligned_cols=55  Identities=38%  Similarity=0.696  Sum_probs=50.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|.|.|.....|||+|.+||+|.|....++|||.|+.+  |+.||||++||.+.+
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTln--g~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLN--GRTGWFPSNYVREIK   73 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEeccCcceecccc--CccCccchHHHHHHh
Confidence            4678899999999999999999999999999999999976  999999999998764

>KOG2164|consensus

Probab=99.02  E-value=1.2e-10  Score=86.79  Aligned_cols=49  Identities=22%  Similarity=0.615  Sum_probs=40.7

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcc---cccCCCCCCCCCce
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH---KELRCPECPTFVPE   58 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~---~~~~CP~Cr~~i~~   58 (173)
                      +..||||++.. .-+..+.|||.||..||..++...   .-..||+|+..+..
T Consensus       186 ~~~CPICL~~~-~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPP-SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCC-CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            88999999988 667777899999999999998854   23579999976654

>KOG4628|consensus

Probab=98.98  E-value=2.6e-10  Score=82.19  Aligned_cols=49  Identities=24%  Similarity=0.741  Sum_probs=41.4

Q ss_pred             Ccccccccccc--CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669          10 LECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus        10 ~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      .+|+||++.+.  ...+.|+|.|.||..||..|+...+ ..||+|+..++..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~di~~~  280 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRDIRTD  280 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-ccCCCCCCcCCCC
Confidence            49999999884  4679999999999999999999763 4699999877543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=4.9e-10  Score=80.37  Aligned_cols=48  Identities=31%  Similarity=0.741  Sum_probs=40.3

Q ss_pred             ccCCccccccccccCC------------CeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTS------------SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~------------~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +++-.|.||++.+..+            |..++|||.+|.+||+.|+..++  +||+||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--TCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--TCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--CCCcccCcc
Confidence            5788999999985333            48899999999999999998654  799999774

>KOG1118|consensus

Probab=98.98  E-value=2.6e-10  Score=79.81  Aligned_cols=55  Identities=31%  Similarity=0.725  Sum_probs=51.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|++++.+||.|.+|++|.+....+.+||.|...  |++|+||.+||+.+-
T Consensus       308 ~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~--g~sG~FPvnYv~vlv  362 (366)
T KOG1118|consen  308 CCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKH--GESGMFPVNYVEVLV  362 (366)
T ss_pred             hheeeeccCCCCCCccCcccCceeeehhhcCcchhhheec--CccCccccceeEEec
Confidence            4789999999999999999999999999999999999998  999999999998763

>KOG4225|consensus

Probab=98.98  E-value=6.4e-10  Score=81.30  Aligned_cols=55  Identities=33%  Similarity=0.742  Sum_probs=51.8

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ++++++|.++...||.|++||||.|+++.+..|+.|...  |+.|+||++||+.+..
T Consensus       233 aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhh--Gr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  233 ARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHH--GRVGIFPASYVEILTP  287 (489)
T ss_pred             hhheeccccCCccccccCCCCEEEEEeeccCceeeeeec--ceecceechheeecCc
Confidence            678999999999999999999999999999999999998  9999999999998753

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.97  E-value=2.6e-10  Score=65.04  Aligned_cols=50  Identities=18%  Similarity=0.295  Sum_probs=39.3

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      -+.+.|||+.++| ..|+++++||+|++.||+.|+.. +...||+++..+..
T Consensus         2 P~~f~CpIt~~lM-~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    2 PDEFLCPITGELM-RDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSE   51 (73)
T ss_dssp             SGGGB-TTTSSB--SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred             CcccCCcCcCcHh-hCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence            3678999999999 89999999999999999999997 23589999877654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00326 SH3 Src homology 3 domains

Probab=98.96  E-value=1e-09  Score=59.60  Aligned_cols=54  Identities=43%  Similarity=0.880  Sum_probs=47.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..+++++|.+...++|++.+||.+.++....++||.++... ++.|+||.+|++.
T Consensus         4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~   57 (58)
T smart00326        4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEE   57 (58)
T ss_pred             EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEE
Confidence            45788999999999999999999999999889999999643 8999999998764

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.95  E-value=1.4e-09  Score=58.19  Aligned_cols=52  Identities=37%  Similarity=0.828  Sum_probs=45.7

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      ++++++|.+...+++++.+||.+.++....++||.++.. .++.|+||.++++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence            467889999999999999999999999888899999964 3389999999875

>KOG2199|consensus

Probab=98.94  E-value=3.2e-10  Score=81.93  Aligned_cols=57  Identities=30%  Similarity=0.698  Sum_probs=51.7

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..+..+|+|||.+...+||+|+.||+|.|++..+..||.|..  .+..|+||++||...
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~--~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGEN--HRGIGLFPSNFVTAD  270 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhcccc--CCcccccchhhhhhh
Confidence            456688999999999999999999999999999999999994  578899999999864

>KOG0162|consensus

Probab=98.93  E-value=7.1e-10  Score=85.92  Aligned_cols=54  Identities=30%  Similarity=0.727  Sum_probs=50.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .+.++|+|.++..+||+|++||+|.+..++..|||.++..  |+.||||.+||.++
T Consensus      1053 ~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~--~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLN--GKEGLFPGNYVTEY 1106 (1106)
T ss_pred             ceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccC--CccccccccccccC
Confidence            3678999999999999999999999999999999999987  99999999999863

>KOG2177|consensus

Probab=98.92  E-value=3.1e-10  Score=83.09  Aligned_cols=48  Identities=35%  Similarity=0.877  Sum_probs=42.6

Q ss_pred             hhhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCC
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      ...+.+.+.|+||++.+ ..+.+++|||+||..|+..+..  ....||.||
T Consensus         7 ~~~~~~~~~C~iC~~~~-~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr   54 (386)
T KOG2177|consen    7 LEVLQEELTCPICLEYF-REPVLLPCGHNFCRACLTRSWE--GPLSCPVCR   54 (386)
T ss_pred             hhhccccccChhhHHHh-hcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence            35678999999999999 6779999999999999999988  447899999

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.91  E-value=8e-10  Score=63.41  Aligned_cols=51  Identities=22%  Similarity=0.460  Sum_probs=38.5

Q ss_pred             cccCCcccccccccc-----------C-CCeeecCCCCCChhhHHHHHhcc-cccCCCCCCCCC
Q psy9669           6 LNDLLECSVCLDRLD-----------T-SSKVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFV   56 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~-----------~-~~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~~i   56 (173)
                      +.++-.|.||+..|.           . +.+.-.|+|.||..||.+|+.++ ....||+||...
T Consensus        18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            345778888887773           1 23445799999999999999963 346899999754

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=7.4e-10  Score=76.10  Aligned_cols=48  Identities=29%  Similarity=0.598  Sum_probs=40.0

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHH-HHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEE-IVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~-~~~~~~~~~CP~Cr~~i   56 (173)
                      .+++.|+||.+.. ..+..++|||.||..||.. |.... .-.||+||+-.
T Consensus       213 ~~d~kC~lC~e~~-~~ps~t~CgHlFC~~Cl~~~~t~~k-~~~CplCRak~  261 (271)
T COG5574         213 LADYKCFLCLEEP-EVPSCTPCGHLFCLSCLLISWTKKK-YEFCPLCRAKV  261 (271)
T ss_pred             ccccceeeeeccc-CCcccccccchhhHHHHHHHHHhhc-cccCchhhhhc
Confidence            4688999999999 8999999999999999988 66543 23599999643

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.84  E-value=3e-09  Score=75.61  Aligned_cols=49  Identities=31%  Similarity=0.605  Sum_probs=36.6

Q ss_pred             cCCcccccccccc-CCC---eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLD-TSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~-~~~---~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++..||+|...-+ ++-   .+.+|||.||.+|+.+.+... ...||.|+..+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-~~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-SGSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-CCCCCCCCCccc
Confidence            4578999998533 222   233799999999999988653 358999997665

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1118|consensus

Probab=98.83  E-value=1.1e-09  Score=76.71  Aligned_cols=54  Identities=31%  Similarity=0.748  Sum_probs=49.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++++|+|.++..+||.|+.||+|.+.+..+++||.|..  -|.+|+||.+|++.+
T Consensus       308 ~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  308 CCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVL  361 (366)
T ss_pred             hheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEe
Confidence            467899999999999999999999999999999999995  488999999999765

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.8e-09  Score=75.57  Aligned_cols=49  Identities=31%  Similarity=0.808  Sum_probs=40.5

Q ss_pred             cCCcccccccccc--CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ...+|.||++.+.  +..+.++|.|.||..|+..|+...+ ..||+||.+++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-ccCCccCCCCC
Confidence            4478999999874  4578899999999999999998422 36999998875

>KOG0162|consensus

Probab=98.78  E-value=7.1e-09  Score=80.57  Aligned_cols=54  Identities=35%  Similarity=0.768  Sum_probs=50.1

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +.+.|+|+|.++..+||+|++|+++.++.++..|||.|..  .++.||||.+|+++
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~--~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKL--NGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhcc--CCcccccccccccc
Confidence            4578999999999999999999999999999999999994  59999999999975

>KOG0311|consensus

Probab=98.73  E-value=7e-10  Score=79.09  Aligned_cols=55  Identities=25%  Similarity=0.579  Sum_probs=44.6

Q ss_pred             ChhhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           2 DEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         2 ~~~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++..+...+.|+||++++........|+|.||.+||..-+..++ -.||.||..+.
T Consensus        36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-~ecptcRk~l~   90 (381)
T KOG0311|consen   36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-NECPTCRKKLV   90 (381)
T ss_pred             cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-CCCchHHhhcc
Confidence            45678889999999999954555557999999999998888755 48999996543

>KOG0978|consensus

Probab=98.71  E-value=2.5e-09  Score=83.41  Aligned_cols=52  Identities=29%  Similarity=0.774  Sum_probs=44.7

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..+.+.+.||+|.+-+ ...+++.|||.||..|++..+.... .+||.|...|+
T Consensus       638 k~yK~~LkCs~Cn~R~-Kd~vI~kC~H~FC~~Cvq~r~etRq-RKCP~Cn~aFg  689 (698)
T KOG0978|consen  638 KEYKELLKCSVCNTRW-KDAVITKCGHVFCEECVQTRYETRQ-RKCPKCNAAFG  689 (698)
T ss_pred             HHHHhceeCCCccCch-hhHHHHhcchHHHHHHHHHHHHHhc-CCCCCCCCCCC
Confidence            4577899999999888 7899999999999999998887533 58999987764

>KOG0824|consensus

Probab=98.71  E-value=6.3e-09  Score=72.80  Aligned_cols=47  Identities=26%  Similarity=0.579  Sum_probs=41.2

Q ss_pred             CccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      -+|+||+... +.|+.+.|+|.||+-||+......+ ..|++||.+++.
T Consensus         8 ~eC~IC~nt~-n~Pv~l~C~HkFCyiCiKGsy~ndk-~~CavCR~pids   54 (324)
T KOG0824|consen    8 KECLICYNTG-NCPVNLYCFHKFCYICIKGSYKNDK-KTCAVCRFPIDS   54 (324)
T ss_pred             CcceeeeccC-CcCccccccchhhhhhhcchhhcCC-CCCceecCCCCc
Confidence            3899999999 7889999999999999999888643 579999998875

>KOG1264|consensus

Probab=98.69  E-value=1.2e-08  Score=80.21  Aligned_cols=58  Identities=19%  Similarity=0.463  Sum_probs=52.5

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.+..++||+|.++.+|....+..+|||.|.++ +...+|||++||++++.
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYG-g~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYG-GRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeeccCCceeecccc-cceeeeccHHHhhhhcc
Confidence            35789999999999999999999999999988999999998 56789999999998754

>KOG2996|consensus

Probab=98.67  E-value=1.9e-08  Score=76.41  Aligned_cols=57  Identities=32%  Similarity=0.645  Sum_probs=48.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..+++-|++-+..-.+|++..||++.+..+.  +.|||.|+.+  |+.||||++||++.
T Consensus       804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevn--grvGwFPstYVee~  862 (865)
T KOG2996|consen  804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVN--GRVGWFPSTYVEED  862 (865)
T ss_pred             eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceec--Cccccccccccccc
Confidence            355677788888888899999999999998864  4699999976  99999999999875

>KOG0802|consensus

Probab=98.67  E-value=9.3e-09  Score=80.15  Aligned_cols=48  Identities=33%  Similarity=0.755  Sum_probs=40.7

Q ss_pred             ccCCccccccccccCC----CeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~----~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ..+..|+||.+.+...    +..++|+|.||..||++|+...  ..||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~--qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ--QTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh--CcCCcchhhh
Confidence            3477999999999433    8999999999999999999975  4799999744

>KOG1702|consensus

Probab=98.60  E-value=5.3e-08  Score=64.61  Aligned_cols=55  Identities=36%  Similarity=0.675  Sum_probs=50.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +++++||.++..++++|..||.|......++||..++..++|.+|..|+||++.+
T Consensus       210 yra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  210 YRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             chhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            6788999999999999999999988888889999999888999999999999753

>KOG4159|consensus

Probab=98.58  E-value=2.2e-08  Score=74.15  Aligned_cols=55  Identities=35%  Similarity=0.773  Sum_probs=45.3

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      .+..++.|.||...+ .+|+.++|||+||..||.+.+..  ...||.||..+....+.
T Consensus        80 ~~~sef~c~vc~~~l-~~pv~tpcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~  134 (398)
T KOG4159|consen   80 EIRSEFECCVCSRAL-YPPVVTPCGHSFCLECLDRSLDQ--ETECPLCRDELVELPAL  134 (398)
T ss_pred             cccchhhhhhhHhhc-CCCccccccccccHHHHHHHhcc--CCCCcccccccccchHH
Confidence            457899999999999 78888899999999999996653  35799999888764433

>KOG2660|consensus

Probab=98.57  E-value=1e-08  Score=72.74  Aligned_cols=54  Identities=28%  Similarity=0.672  Sum_probs=46.3

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      ..+.+..+|++|..+|.....+..|-|+||++||-+++...  ..||.|...+...
T Consensus        10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~--~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES--KYCPTCDIVIHKT   63 (331)
T ss_pred             hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh--ccCCccceeccCc
Confidence            46788999999999997777888999999999999999873  4799999766543

>KOG2856|consensus

Probab=98.56  E-value=1.2e-08  Score=73.39  Aligned_cols=56  Identities=30%  Similarity=0.684  Sum_probs=48.9

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ..++++|||.++..+||+|++||.+..+... ..||..|+.. .|+.|++|++||+-+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence            4578999999999999999999998776655 5699999987 799999999999754

>KOG2879|consensus

Probab=98.54  E-value=6.3e-08  Score=67.06  Aligned_cols=52  Identities=23%  Similarity=0.475  Sum_probs=42.6

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      -..+.+||+|.+....|.+..+|||+||.-|+..-.....-++||.|..+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3578899999998866777778999999999988776555579999987654

>KOG1785|consensus

Probab=98.51  E-value=3.6e-08  Score=71.70  Aligned_cols=59  Identities=27%  Similarity=0.676  Sum_probs=48.2

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce--eeccCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE--YIAIYPYKPQ   68 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~--~~~~~~~~~~   68 (173)
                      ...|.||-+.= ....+.+|||..|..||-.|..+.....||.||..+.-  .+.+..|.+.
T Consensus       369 FeLCKICaend-KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~pr  429 (563)
T KOG1785|consen  369 FELCKICAEND-KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFDPR  429 (563)
T ss_pred             HHHHHHhhccC-CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeeccCCC
Confidence            34799999876 78999999999999999999987666789999988763  4556666653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.48  E-value=3.8e-08  Score=52.95  Aligned_cols=46  Identities=26%  Similarity=0.505  Sum_probs=31.2

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCC
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPE   51 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~   51 (173)
                      -.-.+.|||....|.++.+...|||+|.++.|..+++..+...||+
T Consensus         8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3457899999999944445569999999999999997666778998

>KOG1702|consensus

Probab=98.47  E-value=2.3e-07  Score=61.60  Aligned_cols=56  Identities=34%  Similarity=0.659  Sum_probs=51.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..+.++|+|.++..++++|..||.|......++||..|+...+|..|..|++|++-
T Consensus       208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            56889999999999999999999999899999999999988899999999999863

>KOG4792|consensus

Probab=98.39  E-value=8.1e-08  Score=64.83  Aligned_cols=55  Identities=18%  Similarity=0.605  Sum_probs=50.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .+++++|.+...++|.|++||++.+..+....||..+.. .|+.|.+|..||+...
T Consensus       127 vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns-~Gk~GmIPvpYVe~~~  181 (293)
T KOG4792|consen  127 VRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS-EGKRGMIPVPYVEKYR  181 (293)
T ss_pred             eeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc-CCcccceechHHHhhh
Confidence            566899999999999999999999999988899999986 8999999999998753

>KOG0515|consensus

Probab=98.37  E-value=1.3e-07  Score=71.37  Aligned_cols=52  Identities=25%  Similarity=0.503  Sum_probs=45.2

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCC---CCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~---~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      +.+++||.++..+||+|.+||.+.|+++.+   ..||+++..  |+.|+||.+|+.-
T Consensus       686 vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~ln--g~eGyVPRnylgL  740 (752)
T KOG0515|consen  686 VYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLN--GEEGYVPRNYLGL  740 (752)
T ss_pred             eEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhc--Ccccccchhhhhc
Confidence            567899999999999999999999998753   368888877  9999999999753

>KOG2546|consensus

Probab=98.36  E-value=3.1e-07  Score=67.39  Aligned_cols=55  Identities=44%  Similarity=0.934  Sum_probs=50.2

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      +.+++|+|.+...++|+|..|-++.++++.+++||+|..+  +-.|+||.+|++++.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~--~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQD--GVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheec--CcceeccCccccccc
Confidence            4678999999999999999999999999999999999954  779999999998864

>KOG3655|consensus

Probab=98.33  E-value=2.3e-07  Score=68.99  Aligned_cols=57  Identities=28%  Similarity=0.613  Sum_probs=51.5

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +..++++|+|.+-...+++|..++.|.++...+.|||.|... +|..|+||+|||+-+
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~p-dG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGP-DGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCC-CCCcCcccccccccC
Confidence            345788999999999999999999999999999999999987 899999999999754

>KOG3523|consensus

Probab=98.33  E-value=5e-08  Score=74.39  Aligned_cols=58  Identities=31%  Similarity=0.681  Sum_probs=52.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ++.+...|.+..++++++..+|++.|+.+..+||+.|...++|..||||.+|++++..
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence            3556778999999999999999999999999999999999899999999999988743

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.29  E-value=5.6e-07  Score=46.91  Aligned_cols=43  Identities=28%  Similarity=0.658  Sum_probs=34.5

Q ss_pred             cccccccccc-CCCeeecCC-----CCCChhhHHHHHhcccccCCCCCC
Q psy9669          11 ECSVCLDRLD-TSSKVLPCQ-----HTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus        11 ~C~iC~~~~~-~~~~~~~Cg-----h~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      .|.||++... ..+.+.+|.     |.+|..||.+|+..++..+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899997221 567888986     779999999999876667899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.24  E-value=3.5e-07  Score=73.29  Aligned_cols=53  Identities=26%  Similarity=0.657  Sum_probs=43.8

Q ss_pred             hcccCCcccccccccc------CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLD------TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~------~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++..-+|+||...+.      ..-++..|.|-||..||-.|+.+++.-+||+||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4566779999998763      2346678999999999999999888889999997663

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.23  E-value=4.5e-07  Score=51.09  Aligned_cols=48  Identities=29%  Similarity=0.565  Sum_probs=22.6

Q ss_pred             CCccccccccccCC---C-eee---cCCCCCChhhHHHHHhcccc---------cCCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTS---S-KVL---PCQHTFCKKCLEEIVSSHKE---------LRCPECPTFV   56 (173)
Q Consensus         9 ~~~C~iC~~~~~~~---~-~~~---~Cgh~fc~~Cl~~~~~~~~~---------~~CP~Cr~~i   56 (173)
                      +..|+||+......   + ..-   .|++.||..||.+|+.....         -.||.|+.++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            56899999876311   2 111   69999999999999884211         2499998765

>KOG2856|consensus

Probab=98.21  E-value=3.1e-07  Score=66.25  Aligned_cols=54  Identities=35%  Similarity=0.655  Sum_probs=46.3

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      .++++|||.++..++|+|+.||.+..+.. +..||..|+. ..|+.|++|.+||+-
T Consensus       416 ~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl-~~G~vGLyPAnYVe~  470 (472)
T KOG2856|consen  416 RVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRL-DSGRVGLYPANYVEC  470 (472)
T ss_pred             eEEeeeccCcccccchhhccccHhhhcCCccccccccccc-cCCcccccchhhhhc
Confidence            46799999999999999999999976664 4558999995 469999999999874

>KOG1264|consensus

Probab=98.20  E-value=7.7e-07  Score=70.41  Aligned_cols=56  Identities=30%  Similarity=0.641  Sum_probs=49.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+++|.+...+||+|.++-+|..+.+..++||.|.. .+...+|||++||+.+.
T Consensus       776 t~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdY-Gg~iq~wfPsnyVeei~  831 (1267)
T KOG1264|consen  776 TVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDY-GGRIQQWFPSNYVEEIS  831 (1267)
T ss_pred             hhhhhhccccCCcccccccccceeEeeeccCCceeeccc-ccceeeeccHHHhhhhc
Confidence            367999999999999999999999999999999999995 44567999999999763

>KOG3875|consensus

Probab=98.17  E-value=4.4e-07  Score=64.05  Aligned_cols=57  Identities=25%  Similarity=0.384  Sum_probs=46.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCC-----CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-----~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .+++.|||.+.++.|++|++||++.|..+.+     ..||..+....+.+|+||.+||+-+.
T Consensus       270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~  331 (362)
T KOG3875|consen  270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIG  331 (362)
T ss_pred             HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhh
Confidence            3688999999999999999999998866542     34777766546889999999998653

>KOG0297|consensus

Probab=98.17  E-value=9.2e-07  Score=66.29  Aligned_cols=52  Identities=31%  Similarity=0.740  Sum_probs=43.7

Q ss_pred             hhcccCCccccccccccCCCee-ecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~-~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .++++++.|++|...+ ..|.. +.|||.||..|+..|...  ...||.|+..+..
T Consensus        16 ~~~~~~l~C~~C~~vl-~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   16 RPLDENLLCPICMSVL-RDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQ   68 (391)
T ss_pred             CCCcccccCccccccc-cCCCCCCCCCCcccccccchhhcc--CcCCcccccccch
Confidence            4578899999999999 67777 599999999999999987  3579999866543

>KOG0804|consensus

Probab=98.16  E-value=8.2e-07  Score=65.64  Aligned_cols=46  Identities=39%  Similarity=0.858  Sum_probs=38.0

Q ss_pred             hcccCCccccccccccCCC---eeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           5 TLNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~---~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      .+-+.-+||||++-|+...   +.+.|.|+|+..|+..|...    +||+||.
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~----scpvcR~  219 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS----SCPVCRY  219 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC----cChhhhh
Confidence            3557789999999996433   67789999999999999864    5999994

>KOG4172|consensus

Probab=98.16  E-value=1.2e-07  Score=49.06  Aligned_cols=48  Identities=23%  Similarity=0.588  Sum_probs=39.0

Q ss_pred             CccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      -+|-||.+.. .+.++..|||. .|..|-.+.....+ -.||+||+++...
T Consensus         8 dECTICye~p-vdsVlYtCGHMCmCy~Cg~rl~~~~~-g~CPiCRapi~dv   56 (62)
T KOG4172|consen    8 DECTICYEHP-VDSVLYTCGHMCMCYACGLRLKKALH-GCCPICRAPIKDV   56 (62)
T ss_pred             cceeeeccCc-chHHHHHcchHHhHHHHHHHHHHccC-CcCcchhhHHHHH
Confidence            5899999988 78889999995 79999888777533 4799999887543

>KOG1734|consensus

Probab=98.14  E-value=4.3e-07  Score=62.84  Aligned_cols=49  Identities=29%  Similarity=0.599  Sum_probs=41.3

Q ss_pred             cCCcccccccccc---------CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           8 DLLECSVCLDRLD---------TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         8 ~~~~C~iC~~~~~---------~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ++..|+||...+.         ++...+.|+|.||-.||++|.--+++.+||.|+..+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            5678999998764         245788999999999999999888888999998655

>KOG1843|consensus

Probab=98.11  E-value=1.6e-06  Score=63.53  Aligned_cols=56  Identities=27%  Similarity=0.615  Sum_probs=48.8

Q ss_pred             cCCcceecccCCCCCCcceeecCCCEEEEEEcCC--CCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       111 ~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++..+.++++|..+.+..++|++||++.++++.+  +.||.++..  +++|.||++||+.
T Consensus       415 ~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~--~~egifPanyv~~  472 (473)
T KOG1843|consen  415 EPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGN--GYEGIFPANYVSL  472 (473)
T ss_pred             CcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhcc--ccccccccceecc
Confidence            3445788899999999999999999999988764  579999987  9999999999974

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.08  E-value=8e-07  Score=58.80  Aligned_cols=44  Identities=25%  Similarity=0.563  Sum_probs=36.6

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTF   55 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~   55 (173)
                      .+.|-||...+ ..|+.+.|||.||..|..+-.+.+  ..|-+|...
T Consensus       196 PF~C~iCKkdy-~spvvt~CGH~FC~~Cai~~y~kg--~~C~~Cgk~  239 (259)
T COG5152         196 PFLCGICKKDY-ESPVVTECGHSFCSLCAIRKYQKG--DECGVCGKA  239 (259)
T ss_pred             ceeehhchhhc-cchhhhhcchhHHHHHHHHHhccC--Ccceecchh
Confidence            46899999999 899999999999999987666533  469999743

>KOG0515|consensus

Probab=98.07  E-value=1.7e-06  Score=65.48  Aligned_cols=54  Identities=28%  Similarity=0.501  Sum_probs=46.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCC---CEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQD---GWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~---~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +...|+++|.++..+||+|..||.+.|+.+.++   .||..+.+  |+.|++|.+|+-.
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~ln--g~eGyVPRnylgL  740 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLN--GEEGYVPRNYLGL  740 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhc--Ccccccchhhhhc
Confidence            456789999999999999999999999998543   68888854  8999999999754

>KOG0828|consensus

Probab=98.06  E-value=1.4e-06  Score=65.20  Aligned_cols=50  Identities=28%  Similarity=0.774  Sum_probs=39.6

Q ss_pred             ccCCcccccccccc----------------CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLD----------------TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~----------------~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +....|+||+....                ..+.+++|-|.|+..||++|...- +..||.||.+++
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-kl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-KLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence            45678999996531                236778999999999999999842 357999998875

>KOG3523|consensus

Probab=98.03  E-value=8.9e-07  Score=67.80  Aligned_cols=57  Identities=33%  Similarity=0.660  Sum_probs=52.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +....+..|.+..++++.+..+|++.|+.+..+||..|....+|..||||.+|++.+
T Consensus       609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI  665 (695)
T KOG3523|consen  609 PQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI  665 (695)
T ss_pred             ChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence            455677889999999999999999999999999999999888999999999999876

>KOG4278|consensus

Probab=97.98  E-value=6.3e-06  Score=64.36  Aligned_cols=57  Identities=16%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCC-eeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~-w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      -++++|||.+.+++.|++.+||-+.|++...+| |..++.. +|+ ||||.||+.++.+|
T Consensus        92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartK-NGq-GWVPSNyItPvNSL  149 (1157)
T KOG4278|consen   92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTK-NGQ-GWVPSNYITPVNSL  149 (1157)
T ss_pred             eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeeccc-CCC-ccccccccccccch
Confidence            478999999999999999999999999987554 7777764 454 99999999988664

>KOG4265|consensus

Probab=97.93  E-value=7.4e-06  Score=59.21  Aligned_cols=53  Identities=30%  Similarity=0.751  Sum_probs=41.9

Q ss_pred             ccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      ++.-+|-||++.. ....+++|.|. .|.+|.+...-+.+  .||+||.++.....+
T Consensus       288 ~~gkeCVIClse~-rdt~vLPCRHLCLCs~Ca~~Lr~q~n--~CPICRqpi~~ll~i  341 (349)
T KOG4265|consen  288 ESGKECVICLSES-RDTVVLPCRHLCLCSGCAKSLRYQTN--NCPICRQPIEELLEI  341 (349)
T ss_pred             cCCCeeEEEecCC-cceEEecchhhehhHhHHHHHHHhhc--CCCccccchHhhhee
Confidence            4467999999999 89999999997 69999876653333  599999988654433

>KOG3655|consensus

Probab=97.93  E-value=5.8e-06  Score=61.73  Aligned_cols=55  Identities=27%  Similarity=0.630  Sum_probs=49.6

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+.|+++|.+....+++|..++.|.+++..++|||.|.- .+|..|+||.|||+..
T Consensus       429 ~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~-pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  429 TARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQG-PDGEVGLFPANYVELI  483 (484)
T ss_pred             CccccccccccCCcccccCCccccccccccCCccccccC-CCCCcCcccccccccC
Confidence            467899999999999999999999999999999999996 5789999999998753

>KOG3775|consensus

Probab=97.92  E-value=8.4e-06  Score=59.22  Aligned_cols=56  Identities=38%  Similarity=0.735  Sum_probs=51.6

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++.|.+..++||.|..||.|.|..+.++-|..+.+.++|+.|.||+.|+-+++
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd  320 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD  320 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence            56788899999999999999999999998999999999999999999999998865

>KOG1039|consensus

Probab=97.86  E-value=8.6e-06  Score=59.52  Aligned_cols=50  Identities=22%  Similarity=0.699  Sum_probs=38.3

Q ss_pred             ccCCccccccccccCCC-------eeecCCCCCChhhHHHHHhccc-----ccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHK-----ELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~-----~~~CP~Cr~~i   56 (173)
                      ..+-+|.||++.....+       .+.+|.|.||..|+..|-+..+     ...||+||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            34789999999874333       2256999999999999986544     36899999654

>KOG3875|consensus

Probab=97.81  E-value=4.3e-06  Score=59.19  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcC-----CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-----DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-----~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+|+|.+..+.|++|++||.+.|..+.+     ..||.......+..|+||.+|++.+.
T Consensus       270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~  331 (362)
T KOG3875|consen  270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIG  331 (362)
T ss_pred             HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhh
Confidence            3678999999999999999999998887642     35888876556788999999998764

>KOG4692|consensus

Probab=97.73  E-value=1.8e-05  Score=57.12  Aligned_cols=47  Identities=26%  Similarity=0.572  Sum_probs=40.0

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .++-.||||.-.. ...++.+|+|.-|+.||.+++...  ++|-.|+..+
T Consensus       420 sEd~lCpICyA~p-i~Avf~PC~H~SC~~CI~qHlmN~--k~CFfCktTv  466 (489)
T KOG4692|consen  420 SEDNLCPICYAGP-INAVFAPCSHRSCYGCITQHLMNC--KRCFFCKTTV  466 (489)
T ss_pred             cccccCcceeccc-chhhccCCCCchHHHHHHHHHhcC--CeeeEeccee
Confidence            4677899999877 678999999999999999999854  4799998655

>KOG1813|consensus

Probab=97.71  E-value=1e-05  Score=56.96  Aligned_cols=44  Identities=23%  Similarity=0.571  Sum_probs=37.1

Q ss_pred             CccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +.|-||...+ ..|+.+.|+|.||..|-...++.+  ..|.+|..++
T Consensus       242 f~c~icr~~f-~~pVvt~c~h~fc~~ca~~~~qk~--~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYF-YRPVVTKCGHYFCEVCALKPYQKG--EKCYVCSQQT  285 (313)
T ss_pred             cccccccccc-ccchhhcCCceeehhhhccccccC--Ccceeccccc
Confidence            5699999999 799999999999999987766643  4799998654

>KOG1645|consensus

Probab=97.69  E-value=2e-05  Score=57.84  Aligned_cols=47  Identities=28%  Similarity=0.706  Sum_probs=38.4

Q ss_pred             cCCcccccccccc----CCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLD----TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~----~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      ...+||||++.+.    ...+.+.|||.|=.+||++|+......+||.|..
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~   53 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG   53 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence            4568999999874    2347778999999999999998555678999974

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.69  E-value=2.8e-05  Score=43.69  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=24.3

Q ss_pred             cCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          27 PCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        27 ~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .|-|.|+..||.+|+..++  .||+++...
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~--~CPld~q~w   80 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKG--VCPLDRQTW   80 (88)
T ss_pred             ecchHHHHHHHHHHHhhCC--CCCCCCcee
Confidence            5999999999999999754  699998654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.69  E-value=1.6e-05  Score=56.13  Aligned_cols=44  Identities=32%  Similarity=0.873  Sum_probs=35.4

Q ss_pred             CccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      +.|+.|..++.++...-.|+|.||..||..-+.. ..+.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence            8999999999444444479999999999987764 3478999963

>KOG4278|consensus

Probab=97.68  E-value=0.00022  Score=56.08  Aligned_cols=65  Identities=23%  Similarity=0.553  Sum_probs=50.7

Q ss_pred             cCCCCCCCCCceeeccCCCCCCCccccceecCCEEEEEEEcCCC-EEEEEeCCCCccCcCCCccccCCc
Q psy9669          47 LRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        47 ~~CP~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~-w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..|+.= .....++|+|||.+...+.|++.+|+.+.|+.-..++ |...+.  .+..||+|++|+.++.
T Consensus        82 la~~se-ndpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEart--KNGqGWVPSNyItPvN  147 (1157)
T KOG4278|consen   82 LACSSE-NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEART--KNGQGWVPSNYITPVN  147 (1157)
T ss_pred             hccccc-CCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecc--cCCCcccccccccccc
Confidence            446542 2334578999999999999999999999999976555 666663  4556999999999874

>KOG1002|consensus

Probab=97.68  E-value=1e-05  Score=61.35  Aligned_cols=50  Identities=30%  Similarity=0.752  Sum_probs=42.0

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhc---ccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS---HKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~---~~~~~CP~Cr~~i~   57 (173)
                      .....|.+|.+.- ..++...|-|.||+.|+.++...   +...+||.|-..+.
T Consensus       534 k~~~~C~lc~d~a-ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPA-EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChh-hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            4678999999998 89999999999999999988763   44589999975553

>KOG1493|consensus

Probab=97.66  E-value=7.1e-06  Score=45.68  Aligned_cols=47  Identities=21%  Similarity=0.511  Sum_probs=34.4

Q ss_pred             Ccccccccccc-----------CCC-eeecCCCCCChhhHHHHHhc-ccccCCCCCCCCC
Q psy9669          10 LECSVCLDRLD-----------TSS-KVLPCQHTFCKKCLEEIVSS-HKELRCPECPTFV   56 (173)
Q Consensus        10 ~~C~iC~~~~~-----------~~~-~~~~Cgh~fc~~Cl~~~~~~-~~~~~CP~Cr~~i   56 (173)
                      .+|.||...|+           +-| +.-.|.|.|+..||.+|+.. ++...||+||...
T Consensus        21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            38888888774           112 22259999999999999984 3445799999654

>KOG0827|consensus

Probab=97.64  E-value=2.1e-05  Score=57.39  Aligned_cols=49  Identities=27%  Similarity=0.623  Sum_probs=35.1

Q ss_pred             Ccccccccccc--CCC-eeecCCCCCChhhHHHHHhcccc-cCCCCCCCCCce
Q psy9669          10 LECSVCLDRLD--TSS-KVLPCQHTFCKKCLEEIVSSHKE-LRCPECPTFVPE   58 (173)
Q Consensus        10 ~~C~iC~~~~~--~~~-~~~~Cgh~fc~~Cl~~~~~~~~~-~~CP~Cr~~i~~   58 (173)
                      ..|.||.+.+.  .+. -+-.|||+|+..||..|+....- ..||+|+-.++.
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            47999977663  122 33359999999999999985332 579999944443

>KOG0825|consensus

Probab=97.63  E-value=1.3e-05  Score=63.45  Aligned_cols=56  Identities=18%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             CCccccccccccC--CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceeeccCCCC
Q psy9669           9 LLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYK   66 (173)
Q Consensus         9 ~~~C~iC~~~~~~--~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~   66 (173)
                      .-.||+|+..+..  ...-.+|+|.||..||..|...-  -+||+||..+...++...+.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V~eS~~  180 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVKVLESTG  180 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhheeeeecccc
Confidence            4478888876632  22344799999999999999854  37999998887766544443

>KOG4367|consensus

Probab=97.63  E-value=3e-05  Score=57.60  Aligned_cols=39  Identities=28%  Similarity=0.769  Sum_probs=34.1

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhccc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK   45 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~   45 (173)
                      +++++.|+||...+ .+|++++|+|..|+.|....+.+..
T Consensus         1 meeelkc~vc~~f~-~epiil~c~h~lc~~ca~~~~~~tp   39 (699)
T KOG4367|consen    1 MEEELKCPVCGSFY-REPIILPCSHNLCQACARNILVQTP   39 (699)
T ss_pred             CcccccCceehhhc-cCceEeecccHHHHHHHHhhcccCC
Confidence            36889999999988 9999999999999999987766544

>KOG4275|consensus

Probab=97.61  E-value=3e-06  Score=59.41  Aligned_cols=47  Identities=28%  Similarity=0.742  Sum_probs=37.3

Q ss_pred             CCccccccccccCCCeeecCCC-CCChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh-~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      +..|+||++.. .+-++++||| .-|..|=++..      .||+||..+..++-+
T Consensus       300 ~~LC~ICmDaP-~DCvfLeCGHmVtCt~CGkrm~------eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  300 RRLCAICMDAP-RDCVFLECGHMVTCTKCGKRMN------ECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHhcCC-cceEEeecCcEEeehhhccccc------cCchHHHHHHHHHhh
Confidence            67899999999 8999999999 56999976543      599999766544433

>KOG3601|consensus

Probab=97.60  E-value=4.1e-05  Score=51.54  Aligned_cols=53  Identities=36%  Similarity=0.747  Sum_probs=47.7

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..+.+++.++.+.++.+.+|+.+.++...+..||.|..  -|+.|+||++|+.+.
T Consensus       166 qQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  166 QQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAPS  218 (222)
T ss_pred             hhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCcccccc
Confidence            35788889999999999999999999999999999994  499999999998765

>KOG1843|consensus

Probab=97.56  E-value=4.4e-05  Score=56.19  Aligned_cols=56  Identities=23%  Similarity=0.603  Sum_probs=48.0

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ....+.+++++..+...++.|.+||++.++++.  .+.||.+..  .+++|+||.+|++.
T Consensus       415 ~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~  472 (473)
T KOG1843|consen  415 EPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL  472 (473)
T ss_pred             CcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence            334688999999999999999999999988874  447999994  59999999999864

>KOG1814|consensus

Probab=97.54  E-value=3.2e-05  Score=56.90  Aligned_cols=47  Identities=36%  Similarity=0.940  Sum_probs=36.7

Q ss_pred             ccCCcccccccccc--CCCeeecCCCCCChhhHHHHHhcc------cccCCCCCC
Q psy9669           7 NDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSH------KELRCPECP   53 (173)
Q Consensus         7 ~~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~------~~~~CP~Cr   53 (173)
                      ...+.|.||++...  ...+.++|+|.||++|++.++...      +..+||.+.
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            57789999998763  346888999999999999998731      235687765

>KOG4773|consensus

Probab=97.51  E-value=1.5e-05  Score=57.39  Aligned_cols=56  Identities=36%  Similarity=0.667  Sum_probs=50.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      ..+..+|......||.|..|+++.+..+.+.+||.|+..  +.+||+|.+|+...+.|
T Consensus       178 ~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R--~~~g~yp~sF~~~ld~f  233 (386)
T KOG4773|consen  178 AEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVR--GLTGYYPDSFVKQLDDF  233 (386)
T ss_pred             HHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeec--cccccccHHhhhhhccC
Confidence            466788988888999999999999999989999999998  99999999999887654

>KOG3775|consensus

Probab=97.50  E-value=7.8e-05  Score=54.36  Aligned_cols=55  Identities=35%  Similarity=0.641  Sum_probs=50.3

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      -++++.|.+..++||.+..||-+.|....++-|.+|...++|++|.||+.|+..+
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev  319 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV  319 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence            4678889999999999999999999999999999999999999999999988754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=97.43  E-value=0.0002  Score=46.09  Aligned_cols=34  Identities=18%  Similarity=0.704  Sum_probs=25.3

Q ss_pred             cCCccccccccccCCCeeec------------CCCCC-ChhhHHHHHh
Q psy9669           8 DLLECSVCLDRLDTSSKVLP------------CQHTF-CKKCLEEIVS   42 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~------------Cgh~f-c~~Cl~~~~~   42 (173)
                      ++.+||||++.. ...++|-            |+..| +..||.++-.
T Consensus         1 ed~~CpICme~P-HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHP-HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCC-CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            467999999998 6777775            44443 6789987765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1941|consensus

Probab=97.39  E-value=3.2e-05  Score=56.59  Aligned_cols=47  Identities=32%  Similarity=0.815  Sum_probs=39.5

Q ss_pred             cCCcccccccccc---CCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      -.+-|..|-+.+.   ....-++|.|+||..|+.+++..+....||.||.
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3577999998764   3457789999999999999998877789999993

>KOG2528|consensus

Probab=97.39  E-value=7.7e-05  Score=55.53  Aligned_cols=55  Identities=27%  Similarity=0.639  Sum_probs=48.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +.+++|+|...+..+++...+|++.+..+. ..|||.+... .|.+|+||+.||+..
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~   59 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVT   59 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeee
Confidence            468899999999999999999999887754 6789999987 799999999999864

>KOG2222|consensus

Probab=97.36  E-value=3.1e-05  Score=58.33  Aligned_cols=54  Identities=26%  Similarity=0.545  Sum_probs=48.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +++++.||.....++|.|++.+++.++.+-+...|.|...  |-.||||+.+|+-+
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgeln--glrgwfpakfvell  603 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELN--GLRGWFPAKFVELL  603 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccc--cccccchHHHHHHH
Confidence            4678889999999999999999999999888889999997  99999999988754

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=97.32  E-value=0.00035  Score=45.05  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=38.1

Q ss_pred             ccCCccccccccccCCCeeecCCCCC-----ChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTF-----CKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~f-----c~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..+-.|-||++.- . ....+|...-     |.+||++|+..++...|++|+.+..
T Consensus         6 ~~~~~CRIC~~~~-~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEY-D-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCC-C-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            4566999999876 2 2335777654     9999999999888889999987653

>KOG1001|consensus

Probab=97.28  E-value=9.9e-05  Score=58.98  Aligned_cols=48  Identities=31%  Similarity=0.750  Sum_probs=41.6

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ...|++|.+ . ..+.++.|||.||.+|+...+.......||.||..+.+
T Consensus       454 ~~~c~ic~~-~-~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  454 SHWCHICCD-L-DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             ccccccccc-c-ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            389999999 6 89999999999999999999887666689999976643

>KOG2817|consensus

Probab=97.26  E-value=0.00025  Score=52.19  Aligned_cols=50  Identities=22%  Similarity=0.586  Sum_probs=41.7

Q ss_pred             cccCCcccccccccc--CCCeeecCCCCCChhhHHHHHhccc-ccCCCCCCCC
Q psy9669           6 LNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECPTF   55 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~~-~~~CP~Cr~~   55 (173)
                      +...+.|||=.+.-.  ++|+.+.|||.-+++-|.+....+. .+.||.|+..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            567889999888664  7999999999999999999887532 4889999753

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=97.26  E-value=0.00023  Score=36.71  Aligned_cols=41  Identities=24%  Similarity=0.710  Sum_probs=27.9

Q ss_pred             cccccccccC-CCeeecCCCCC-----ChhhHHHHHhcccccCCCCC
Q psy9669          12 CSVCLDRLDT-SSKVLPCQHTF-----CKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~-~~~~~~Cgh~f-----c~~Cl~~~~~~~~~~~CP~C   52 (173)
                      |.||++.-.. .+.+.+|.-.-     |.+||.+|+...+..+|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            7799986543 35788887754     99999999997666789887

>KOG4185|consensus

Probab=97.18  E-value=0.00029  Score=51.26  Aligned_cols=48  Identities=27%  Similarity=0.804  Sum_probs=39.1

Q ss_pred             cCCcccccccccc-----CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           8 DLLECSVCLDRLD-----TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         8 ~~~~C~iC~~~~~-----~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ..+.|-||.+.+.     ..|+.+.|||++|..|+...+.... ..||.||...
T Consensus         2 ~~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~-i~cpfcR~~~   54 (296)
T KOG4185|consen    2 SFPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSR-ILCPFCRETT   54 (296)
T ss_pred             CCCceeecCccccccCcccCCcccccCceehHhHHHHHhcCce-eeccCCCCcc
Confidence            3568999998774     4689999999999999998887644 5689999763

>KOG3632|consensus

Probab=97.18  E-value=0.00035  Score=56.99  Aligned_cols=54  Identities=37%  Similarity=0.717  Sum_probs=44.8

Q ss_pred             ceecccCCCCC--------CcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNS--------EYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~--------~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++||.+..        ..||.|++|+||.|++.. .+|++.++..  |+.|+||.|+|.++.
T Consensus      1141 fVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~n--gr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1141 FVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELN--GRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             eEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccc--ccccccccccccccc
Confidence            56778887533        358999999999998854 5799999998  999999999998863

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=97.12  E-value=0.00027  Score=35.67  Aligned_cols=41  Identities=17%  Similarity=0.682  Sum_probs=24.5

Q ss_pred             cccccccccCCCeee--cCCCCCChhhHHHHHhcccccCCCCC
Q psy9669          12 CSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus        12 C~iC~~~~~~~~~~~--~Cgh~fc~~Cl~~~~~~~~~~~CP~C   52 (173)
                      |.+|.++.....+..  .|+-.+|..|+..+++.....+||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678999875555555  49999999999999997665579987

; PDB: 3NW0_A 2CT0_A.

>KOG2114|consensus

Probab=97.11  E-value=0.0002  Score=57.45  Aligned_cols=43  Identities=35%  Similarity=0.780  Sum_probs=36.7

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ...|..|...+..|.+...|||.||+.|+.     .+...||.|+...
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccchhh
Confidence            468999999997788999999999999998     2556899998644

>KOG2222|consensus

Probab=97.07  E-value=0.0002  Score=54.21  Aligned_cols=54  Identities=22%  Similarity=0.407  Sum_probs=48.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++++.+|.....+++.|.++|++.++..-++.-|.|+.+  |-+||||..+|+.+
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgeln--glrgwfpakfvell  603 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELN--GLRGWFPAKFVELL  603 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccc--cccccchHHHHHHH
Confidence            4678889999999999999999999999888889999966  89999999999865

>KOG0197|consensus

Probab=97.06  E-value=0.00021  Score=54.30  Aligned_cols=60  Identities=27%  Similarity=0.590  Sum_probs=51.6

Q ss_pred             CCCceeeccCCCCCCCccccceecCCE-EEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSV-YTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~-v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ......++.++|.+....+|+|..|+. ..+++..+..||..+....+..|++|+||+...
T Consensus         9 ~~~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen    9 SHETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cccceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            344567899999999999999999999 777777778999988766889999999999864

>KOG0197|consensus

Probab=97.04  E-value=0.00017  Score=54.85  Aligned_cols=56  Identities=16%  Similarity=0.517  Sum_probs=47.7

Q ss_pred             cceecccCCCCCCcceeecCCCE-EEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDL-IYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~-v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .+.+.+++.+....+|+|..|+. ..++...+..||..+....+..|++|.|||...
T Consensus        13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   13 IVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             eEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            36788999999999999999999 666777678899988766789999999999864

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=97.04  E-value=0.0011  Score=38.28  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         125 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       125 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +...|.+.+||++.|+...+..-|.++.. .|+.|+||.+++-+.+
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~-~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS-EGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEET-TTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCC-CCceeEEEHHHccCCC
Confidence            34689999999999999888888899987 8999999999886654

>KOG4575|consensus

Probab=97.02  E-value=0.00092  Score=52.20  Aligned_cols=57  Identities=26%  Similarity=0.510  Sum_probs=46.5

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ...++.|.+.++..+++.|-+||++.+..-.++.||-+....+...|+||.|+|.-.
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            346788899999999999999999999888767677666654667899999999543

>KOG3002|consensus

Probab=97.02  E-value=0.00046  Score=49.85  Aligned_cols=48  Identities=27%  Similarity=0.591  Sum_probs=38.1

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .-+.+.||||.+.+..+..+-.=||..|.+|-.+..     -+||.||.+++.
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIGN   92 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhhhc-----ccCCcccccccc
Confidence            457899999999995566666779999999986533     369999988763

>KOG3557|consensus

Probab=96.99  E-value=0.00011  Score=57.14  Aligned_cols=53  Identities=19%  Similarity=0.441  Sum_probs=45.8

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +.+.|||.+.+..||++.+||++.++.. ...||+++.. .|+.||||.+.+..+
T Consensus       503 ~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~-~G~~GyvP~nIL~~~  555 (721)
T KOG3557|consen  503 VLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNG-HGRAGYVPSNILAPL  555 (721)
T ss_pred             eeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCc-cCCCCCcchhhhccC
Confidence            5678999999999999999999988776 4679999987 799999999887654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.97  E-value=0.00044  Score=36.35  Aligned_cols=45  Identities=31%  Similarity=0.581  Sum_probs=32.6

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .....|-.|...- ....+++|||..|..|....--+    .||+|..++
T Consensus         5 ~~~~~~~~~~~~~-~~~~~~pCgH~I~~~~f~~~rYn----gCPfC~~~~   49 (55)
T PF14447_consen    5 QPEQPCVFCGFVG-TKGTVLPCGHLICDNCFPGERYN----GCPFCGTPF   49 (55)
T ss_pred             ccceeEEEccccc-cccccccccceeeccccChhhcc----CCCCCCCcc
Confidence            3455666676655 57788999999999997653322    499998766

>KOG2930|consensus

Probab=96.94  E-value=0.00034  Score=41.49  Aligned_cols=26  Identities=23%  Similarity=0.618  Sum_probs=22.8

Q ss_pred             cCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669          27 PCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus        27 ~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      .|-|.||..||.+|+.+.+  .||+|..
T Consensus        80 ~CNHaFH~hCisrWlktr~--vCPLdn~  105 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRN--VCPLDNK  105 (114)
T ss_pred             ecchHHHHHHHHHHHhhcC--cCCCcCc
Confidence            5999999999999999764  6999964

>KOG3039|consensus

Probab=96.92  E-value=0.00069  Score=46.78  Aligned_cols=47  Identities=21%  Similarity=0.409  Sum_probs=38.0

Q ss_pred             cCCccccccccccC---CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           8 DLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         8 ~~~~C~iC~~~~~~---~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ..+.||+|.+.+.+   -.++-+|||.||..|++.++...  ..||+|..++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~pl  269 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPL  269 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcC
Confidence            67899999998853   24666899999999999999854  4699986544

>KOG1571|consensus

Probab=96.90  E-value=0.00025  Score=51.57  Aligned_cols=49  Identities=31%  Similarity=0.571  Sum_probs=37.2

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      +.....|-||.+.. .....++|||.-|  |..-..+.   ..||+||..+....
T Consensus       302 ~~~p~lcVVcl~e~-~~~~fvpcGh~cc--ct~cs~~l---~~CPvCR~rI~~~~  350 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEP-KSAVFVPCGHVCC--CTLCSKHL---PQCPVCRQRIRLVR  350 (355)
T ss_pred             cCCCCceEEecCCc-cceeeecCCcEEE--chHHHhhC---CCCchhHHHHHHHH
Confidence            34566899999998 5699999999977  77655543   35999998775443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.89  E-value=0.00035  Score=42.86  Aligned_cols=34  Identities=32%  Similarity=0.707  Sum_probs=27.6

Q ss_pred             cccCCccccccccccCC-CeeecCCCCCChhhHHH
Q psy9669           6 LNDLLECSVCLDRLDTS-SKVLPCQHTFCKKCLEE   39 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~-~~~~~Cgh~fc~~Cl~~   39 (173)
                      +.++..|++|...+... -...||||.||..|+.+
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence            46788999999988543 46679999999999864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1451|consensus

Probab=96.82  E-value=0.0011  Score=51.46  Aligned_cols=50  Identities=28%  Similarity=0.647  Sum_probs=39.8

Q ss_pred             ecccCCCCCCcceeecCCCEEEE-EEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         117 CIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       117 ~~~~~~~~~~~el~~~~g~~v~v-~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++.-.+....++++..|.++.- .....+||..|+..  |++|++|.|||++
T Consensus       761 ~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLn--Gktglip~nyve~  811 (812)
T KOG1451|consen  761 TLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLN--GKTGLIPSNYVEP  811 (812)
T ss_pred             ceeccCCCCcccccccCcceeeeecccCCCCceeeecC--CCcccCcccccCc
Confidence            34444555566899999998864 44567899999998  9999999999986

>PHA02862 5L protein; Provisional

Probab=96.76  E-value=0.0013  Score=41.64  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=35.1

Q ss_pred             CccccccccccCCCeeecCCCC-----CChhhHHHHHhcccccCCCCCCCCC
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHT-----FCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~-----fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      -.|-||++.- .+. ..+|..+     .|++||.+|+..+++..|++|+.+.
T Consensus         3 diCWIC~~~~-~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          3 DICWICNDVC-DER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CEEEEecCcC-CCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            4799999865 222 4677664     5999999999987888999999655

>KOG4773|consensus

Probab=96.75  E-value=0.00028  Score=51.06  Aligned_cols=55  Identities=22%  Similarity=0.364  Sum_probs=48.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+.++++|.+....+|.+..|+++.++.+.+.+||.|+  .++..||+|..|+..++
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk--~R~~~g~yp~sF~~~ld  231 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGK--VRGLTGYYPDSFVKQLD  231 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeee--eccccccccHHhhhhhc
Confidence            35678889999999999999999999999999999999  45999999999988763

>KOG3557|consensus

Probab=96.74  E-value=0.00047  Score=53.79  Aligned_cols=55  Identities=25%  Similarity=0.580  Sum_probs=47.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+...|++.++...++++.+||++.|+.. ...||..+ +..|+.||+|.+.+.++.
T Consensus       502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~k-n~~G~~GyvP~nIL~~~~  556 (721)
T KOG3557|consen  502 WVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVK-NGHGRAGYVPSNILAPLQ  556 (721)
T ss_pred             eeeeehhhhcccchhhhhhhhhhhhhhhc-cccceecc-CccCCCCCcchhhhccCC
Confidence            35678899999999999999999988886 56799999 478999999999988764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.71  E-value=0.0014  Score=33.64  Aligned_cols=43  Identities=30%  Similarity=0.819  Sum_probs=21.2

Q ss_pred             ccccccccc-CCCeee--cCCCCCChhhHHHHHhcccccCCCCCCCC
Q psy9669          12 CSVCLDRLD-TSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECPTF   55 (173)
Q Consensus        12 C~iC~~~~~-~~~~~~--~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~   55 (173)
                      ||+|.+.+. ....+.  +||+..|..|..+.... ..-+||-||.+
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCC
Confidence            789998874 223333  58888999999888863 23479999964

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.68  E-value=0.0049  Score=32.72  Aligned_cols=39  Identities=31%  Similarity=0.560  Sum_probs=30.1

Q ss_pred             ceeecCCCEEEEEEcCCCC-eeEEEeCCCCcEEEecCCCeE
Q psy9669         128 ELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~-w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      --.+..|+.+.++....++ |++.+.. ++..||++..|++
T Consensus        16 i~~l~~g~~v~v~~~~~~~~W~~V~~~-~g~~GwV~~~~l~   55 (55)
T PF08239_consen   16 IGQLPKGEKVTVLGESGDGNWYKVRTY-DGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEEETTSEEEEEEEETT--EEEEEEE-TTEEEEEEGGCEE
T ss_pred             hEEEeCCCEEEEEEEcCCcEEEEEECc-CCcEEEEEccccC
Confidence            3457889999998876555 9999444 5889999999875

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG2528|consensus

Probab=96.67  E-value=0.0012  Score=49.36  Aligned_cols=56  Identities=27%  Similarity=0.659  Sum_probs=48.0

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..+++|++......+++...++.+.+.... .++||.|. |.+|..|.||..|++...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~-Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGS-NSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCC-CccCccCCCcccceeeec
Confidence            457889999999999999999999887764 66898888 689999999999998764

>KOG3725|consensus

Probab=96.60  E-value=0.00039  Score=48.35  Aligned_cols=53  Identities=25%  Similarity=0.447  Sum_probs=46.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      +++++|||++-...|+++-..+++.|+.-.  +..|..+..+  ++.|.||-+|++-
T Consensus       319 kArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErG--nkkGKvPvtYlEL  373 (375)
T KOG3725|consen  319 KARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERG--NKKGKVPVTYLEL  373 (375)
T ss_pred             ceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhc--CCCCCcchhHHHh
Confidence            578999999999999999999999988755  6789999987  9999999999863

>KOG3800|consensus

Probab=96.59  E-value=0.0015  Score=46.31  Aligned_cols=46  Identities=26%  Similarity=0.688  Sum_probs=34.5

Q ss_pred             cccccccccc-CC---CeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669          11 ECSVCLDRLD-TS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus        11 ~C~iC~~~~~-~~---~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .||+|...-+ ++   ..+-+|+|.-|-+|+.+.+..+. ..||.|...+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~-~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP-AQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC-CCCCcccchhh
Confidence            5999997543 22   23448999999999999998643 57999986554

>KOG4739|consensus

Probab=96.58  E-value=0.001  Score=45.99  Aligned_cols=44  Identities=25%  Similarity=0.677  Sum_probs=31.9

Q ss_pred             Ccccccccccc-CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669          10 LECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus        10 ~~C~iC~~~~~-~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..|-.|..... .+-.++.|+|+||..|..--..    ..||+|+..+.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir   48 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR   48 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee
Confidence            46777776553 3447778999999999975332    26999997764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.40  E-value=0.0029  Score=46.03  Aligned_cols=51  Identities=25%  Similarity=0.587  Sum_probs=40.0

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      -+++..|-||-..+ .-...+||+|..|.-|--+.-.--+...||+||..-.
T Consensus        58 DEen~~C~ICA~~~-TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          58 DEENMNCQICAGST-TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccceeEEecCCc-eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            35778999999988 6778889999999999766544334467999996543

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.39  E-value=0.0018  Score=33.78  Aligned_cols=45  Identities=22%  Similarity=0.591  Sum_probs=24.4

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHh---cccccCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS---SHKELRCPECPT   54 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~---~~~~~~CP~Cr~   54 (173)
                      .+.||+....+..+.+...|.|..|.+= ..++.   ..+...||+|..
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence            4789999999877888889999988753 33433   234478999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=96.36  E-value=0.014  Score=31.86  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      -..+..|+.+.++....++|.+.+.. +|..||++..++.
T Consensus        24 ~~~l~~g~~v~i~~~~~~~W~~v~~~-~g~~Gwi~~~~~~   62 (63)
T smart00287       24 IGTLKKGDKVKVLGVDGQDWAKITYG-SGQRGYVPGYVVN   62 (63)
T ss_pred             eEEecCCCEEEEEEccCCceEEEEcC-CCCEEEEEeeeec
Confidence            35578999999988755589999875 6899999877653

>KOG4575|consensus

Probab=96.27  E-value=0.0082  Score=47.17  Aligned_cols=56  Identities=20%  Similarity=0.448  Sum_probs=45.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..+|.|...++..+++.|-.||++.+..-.+..||-+....+...|+||+++|.-+
T Consensus        10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen   10 MVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             eEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            35788889999999999999999998887666666666544678899999999544

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.21  E-value=0.0033  Score=44.90  Aligned_cols=50  Identities=26%  Similarity=0.494  Sum_probs=38.4

Q ss_pred             cccCCccccccccccC---CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           6 LNDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~---~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      -...+.|||....|+.   -..+-+|||.|+..+|++.-   ....||+|..++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCcccc
Confidence            4678899999998842   23455899999999999884   22469999977754

>KOG0609|consensus

Probab=96.21  E-value=0.0023  Score=49.19  Aligned_cols=56  Identities=20%  Similarity=0.496  Sum_probs=44.2

Q ss_pred             eeeccCCCCCCCcc-------ccceecCCEEEEEEEcCCCEEEEEeCC---CCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDD-------ELELRRGSVYTVTERCQDGWFKGTSQR---TQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~-------el~~~~g~~v~v~~~~~~~w~~~~~~~---~~~~G~~p~~~v~~~  113 (173)
                      ..+|.++|.+...+       .+.|.+||++.|+++.+..||.+....   .+..|.+|+......
T Consensus       216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             eehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence            45788899886654       367999999999999999999998643   256799998776543

>KOG0609|consensus

Probab=96.16  E-value=0.0018  Score=49.73  Aligned_cols=55  Identities=22%  Similarity=0.539  Sum_probs=43.6

Q ss_pred             cceecccCCCCCCc-------ceeecCCCEEEEEEcCCCCeeEEEeCCC---CcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEY-------ELELRVGDLIYVHKKRDDGWYKGTLQRT---GRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~-------el~~~~g~~v~v~~~~~~~w~~~~~~~~---g~~G~~P~~~v~~  168 (173)
                      .++++++|.+..+.       .+.|.+|||+.+..+.+.-||.++...+   +..|++|+...++
T Consensus       216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            36778888876643       6999999999999999999999987732   4578999876543

>KOG1451|consensus

Probab=96.12  E-value=0.0084  Score=46.79  Aligned_cols=53  Identities=30%  Similarity=0.686  Sum_probs=42.1

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEE-EcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++.-.+....++++..|.++.-.. ...+||..|+.+  |+.|++|++||+++
T Consensus       759 ~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLn--Gktglip~nyve~l  812 (812)
T KOG1451|consen  759 VKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLN--GKTGLIPSNYVEPL  812 (812)
T ss_pred             ccceeccCCCCcccccccCcceeeeecccCCCCceeeecC--CCcccCcccccCcC
Confidence            345566667777889999998886444 667899999976  99999999999864

>KOG3161|consensus

Probab=96.12  E-value=0.0013  Score=51.43  Aligned_cols=42  Identities=31%  Similarity=0.748  Sum_probs=33.8

Q ss_pred             hcccCCcccccccccc---CCCeeecCCCCCChhhHHHHHhcccccCCC
Q psy9669           5 TLNDLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCP   50 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP   50 (173)
                      .+.+.+.|+||...|.   ..|+.+-|||+.|+.|++.....    .||
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp   51 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP   51 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC
Confidence            3557789999976653   57899999999999999887764    477

>KOG1428|consensus

Probab=96.09  E-value=0.0041  Score=53.41  Aligned_cols=53  Identities=21%  Similarity=0.557  Sum_probs=39.7

Q ss_pred             cccCCcccccccc-cc-CCCeeecCCCCCChhhHHHHHhcc---c-----ccCCCCCCCCCce
Q psy9669           6 LNDLLECSVCLDR-LD-TSSKVLPCQHTFCKKCLEEIVSSH---K-----ELRCPECPTFVPE   58 (173)
Q Consensus         6 ~~~~~~C~iC~~~-~~-~~~~~~~Cgh~fc~~Cl~~~~~~~---~-----~~~CP~Cr~~i~~   58 (173)
                      -+.+-.|-||+.. +. .+.+.+.|+|.|+..|.++.+...   .     -..||+|+..+.+
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            3566789999964 32 577899999999999998877632   1     1469999987753

>KOG0199|consensus

Probab=95.88  E-value=0.012  Score=47.37  Aligned_cols=51  Identities=25%  Similarity=0.281  Sum_probs=41.7

Q ss_pred             ecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeE
Q psy9669         117 CIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       117 ~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      +...++...++.|.+..||.|.|++... +-||.+...++++.|.||.+.|.
T Consensus       379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            3455666778899999999998888654 45999988778999999999876

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.79  E-value=0.0032  Score=43.39  Aligned_cols=49  Identities=29%  Similarity=0.692  Sum_probs=34.7

Q ss_pred             hcccCCccccccccccCCC--e--eec-CCCCCChhhHHHHHhcccccCCC--CCCC
Q psy9669           5 TLNDLLECSVCLDRLDTSS--K--VLP-CQHTFCKKCLEEIVSSHKELRCP--ECPT   54 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~--~--~~~-Cgh~fc~~Cl~~~~~~~~~~~CP--~Cr~   54 (173)
                      .-..+-.||+|...-+..|  .  +.| |-|..|-+|+.+.+..+. ..||  -|..
T Consensus         6 ~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp-AqCP~~gC~k   61 (314)
T COG5220           6 EEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP-AQCPYKGCGK   61 (314)
T ss_pred             hhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC-CCCCCccHHH
Confidence            3345669999997644222  2  224 999999999999998643 5799  4543

>KOG1940|consensus

Probab=95.76  E-value=0.0051  Score=43.81  Aligned_cols=44  Identities=30%  Similarity=0.782  Sum_probs=36.9

Q ss_pred             CCcccccccccc---CCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           9 LLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         9 ~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      ...||||.+.+.   ..+..++|||.-+..|++.....+  .+||+|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~--y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG--YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC--CCCCcccc
Confidence            345999998764   567888999999999999988765  78999987

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.72  E-value=0.011  Score=34.33  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          69 KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        69 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...+|.+.+|+++.|++..+..-|.++ |..|+-|+++.+++-+.
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCR-N~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCR-NSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEE-ETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEe-CCCCceeEEEHHHccCC
Confidence            456799999999999999999999999 47899999999887543

>KOG4429|consensus

Probab=95.69  E-value=0.0037  Score=44.46  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=46.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ..+.|.|.+...++|....|+++.+-+.-..|||.++..  |..|-||+.+|++.
T Consensus       366 cdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~--gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  366 CDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLL--GDFEHFHAAEIEEA  418 (421)
T ss_pred             hhhhhccccccccccCCcccceeeecCcccCCCceeeec--cccCCCcHHHHHHh
Confidence            456788999999999999999998877778899999998  99999999988653

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.66  E-value=0.0088  Score=43.01  Aligned_cols=50  Identities=24%  Similarity=0.578  Sum_probs=41.1

Q ss_pred             hcccCCcccccccccc--CCCeeecCCCCCChhhHHHHHhcc-cccCCCCCCC
Q psy9669           5 TLNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECPT   54 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~   54 (173)
                      .+...+.||+=.+.-+  ++|+++.|||..=+.-+.+..+.+ ..+.||.|+.
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            4678899999888765  789999999999999998887743 3478999973

>KOG4362|consensus

Probab=95.58  E-value=0.002  Score=51.11  Aligned_cols=52  Identities=31%  Similarity=0.800  Sum_probs=42.2

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhccc-ccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~-~~~CP~Cr~~i~   57 (173)
                      .+...++|+||.... ..+..+.|-|.||..|+...+...+ ...||+|+..+.
T Consensus        17 ~~~k~lEc~ic~~~~-~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   17 AMQKILECPICLEHV-KEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             HHhhhccCCceeEEe-eccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            355778999999988 6779999999999999987776544 468999986553

>KOG0826|consensus

Probab=95.49  E-value=0.0095  Score=43.07  Aligned_cols=45  Identities=24%  Similarity=0.488  Sum_probs=35.4

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      .+.-.||+|...-.++.++..=|-.||..|+-.+....+  +||+=.
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~--~CPVT~  342 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG--HCPVTG  342 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC--CCCccC
Confidence            466789999988745666666799999999999998543  698743

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.42  E-value=0.0062  Score=44.22  Aligned_cols=45  Identities=29%  Similarity=0.729  Sum_probs=30.2

Q ss_pred             cccccccccc-CCC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          11 ECSVCLDRLD-TSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        11 ~C~iC~~~~~-~~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .||.|.+.++ .+-  .-.+||-..|+-|....-+.-+ -+||.||...
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~ln-grcpacrr~y   63 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLN-GRCPACRRKY   63 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhcc-CCChHhhhhc
Confidence            4999999875 122  3335777779988765554323 4799999543

>KOG2932|consensus

Probab=95.35  E-value=0.0078  Score=43.18  Aligned_cols=41  Identities=29%  Similarity=0.775  Sum_probs=28.1

Q ss_pred             cccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        12 C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      |--|---+..-.++++|.|.||.+|-...-    .+.||.|-..+
T Consensus        93 Cd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~----dK~Cp~C~d~V  133 (389)
T KOG2932|consen   93 CDRCDFPIAIYGRMIPCKHVFCLECARSDS----DKICPLCDDRV  133 (389)
T ss_pred             ecccCCcceeeecccccchhhhhhhhhcCc----cccCcCcccHH
Confidence            556655443456888999999999985422    35699996433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.33  E-value=0.03  Score=38.52  Aligned_cols=40  Identities=15%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             eeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         129 LELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       129 l~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      -++..|+.+.++...+ .+|.+.+.. +|++|||+..|+...
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhcCC
Confidence            4688999999988764 689999875 699999999988753

>KOG1812|consensus

Probab=95.28  E-value=0.0075  Score=45.49  Aligned_cols=43  Identities=33%  Similarity=0.867  Sum_probs=30.1

Q ss_pred             CCcccccc-ccccC--CCeeecCCCCCChhhHHHHHhc----ccccCCCC
Q psy9669           9 LLECSVCL-DRLDT--SSKVLPCQHTFCKKCLEEIVSS----HKELRCPE   51 (173)
Q Consensus         9 ~~~C~iC~-~~~~~--~~~~~~Cgh~fc~~Cl~~~~~~----~~~~~CP~   51 (173)
                      ..+|.||. +....  .-....|+|.||.+|+++++..    ....+||.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~  195 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH  195 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence            56899999 44321  1225679999999999998873    23456765

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.28  E-value=0.0091  Score=37.67  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=31.1

Q ss_pred             CCccccccccccC--CCeeecCC------CCCChhhHHHHHhcccccCCCCCC
Q psy9669           9 LLECSVCLDRLDT--SSKVLPCQ------HTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus         9 ~~~C~iC~~~~~~--~~~~~~Cg------h~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      ..+|.||.+.+..  ..+.++||      |.||.+|+++|.+..  .+-|.=|
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~--~rDPfnR   76 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER--NRDPFNR   76 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc--cCCCccc
Confidence            7899999998854  45666776      459999999996432  3455544

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA03096 p28-like protein; Provisional

Probab=95.26  E-value=0.0082  Score=43.24  Aligned_cols=44  Identities=18%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CccccccccccCC-------CeeecCCCCCChhhHHHHHhcc-cccCCCCCC
Q psy9669          10 LECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSH-KELRCPECP   53 (173)
Q Consensus        10 ~~C~iC~~~~~~~-------~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr   53 (173)
                      -.|.||++.....       ..+..|-|.||..|+..|-... ....||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            5799999865432       2444799999999999997742 234566665

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.20  E-value=0.013  Score=36.72  Aligned_cols=49  Identities=24%  Similarity=0.630  Sum_probs=36.2

Q ss_pred             cCCccccccccccCCCeeec----CCCCCChhhHHHHH-hcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTSSKVLP----CQHTFCKKCLEEIV-SSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~----Cgh~fc~~Cl~~~~-~~~~~~~CP~Cr~~i~   57 (173)
                      ...+|-||++.- .+..++.    ||=..|..|--..+ ...--+.||.|+..+.
T Consensus        79 ~lYeCnIC~etS-~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   79 KLYECNICKETS-AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             CceeccCccccc-chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            568999999987 4554443    99999999964444 4444568999997764

>KOG3970|consensus

Probab=95.15  E-value=0.018  Score=39.47  Aligned_cols=47  Identities=30%  Similarity=0.634  Sum_probs=36.7

Q ss_pred             Ccccccccccc-CCCeeecCCCCCChhhHHHHHhcc------cccCCCCCCCCC
Q psy9669          10 LECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVSSH------KELRCPECPTFV   56 (173)
Q Consensus        10 ~~C~iC~~~~~-~~~~~~~Cgh~fc~~Cl~~~~~~~------~~~~CP~Cr~~i   56 (173)
                      -.|..|...+- .+.+-+.|-|.|+..|+.++...-      ...+||.|..+|
T Consensus        51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            47999998773 356788999999999999997732      235799998655

>KOG1952|consensus

Probab=95.09  E-value=0.013  Score=47.57  Aligned_cols=48  Identities=29%  Similarity=0.751  Sum_probs=37.3

Q ss_pred             ccCCccccccccccCC---CeeecCCCCCChhhHHHHHhcc-----cccCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSH-----KELRCPECPT   54 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~---~~~~~Cgh~fc~~Cl~~~~~~~-----~~~~CP~Cr~   54 (173)
                      ...++|-||.+.+...   .....|-|+|+..||++|..+.     ...+||.|..
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            5788999999988522   2344699999999999998852     3468999983

>KOG4445|consensus

Probab=95.06  E-value=0.0031  Score=44.92  Aligned_cols=50  Identities=26%  Similarity=0.533  Sum_probs=36.9

Q ss_pred             cCCccccccccccCC--CeeecCCCCCChhhHHHHHhccc---------------------ccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSSHK---------------------ELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~--~~~~~Cgh~fc~~Cl~~~~~~~~---------------------~~~CP~Cr~~i~   57 (173)
                      ..-.|.||+--|-..  -..+.|-|-||..||.+++..-.                     ...||+||..+.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            456899999766333  36778999999999988876210                     135999997665

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=94.86  E-value=0.0018  Score=35.97  Aligned_cols=44  Identities=20%  Similarity=0.495  Sum_probs=24.7

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      ++.||.|...|. ..   . +|.+|..|-..+...   ..||-|..++....
T Consensus         1 e~~CP~C~~~L~-~~---~-~~~~C~~C~~~~~~~---a~CPdC~~~Le~Lk   44 (70)
T PF07191_consen    1 ENTCPKCQQELE-WQ---G-GHYHCEACQKDYKKE---AFCPDCGQPLEVLK   44 (70)
T ss_dssp             --B-SSS-SBEE-EE---T-TEEEETTT--EEEEE---EE-TTT-SB-EEEE
T ss_pred             CCcCCCCCCccE-Ee---C-CEEECccccccceec---ccCCCcccHHHHHH
Confidence            468999998873 11   1 888999999876643   46999987775544

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG3771|consensus

Probab=94.59  E-value=0.018  Score=43.66  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=39.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ...++++|.+...++|+|..|++|.++... .+.||.|++.  |..+-+|.+|+.
T Consensus       402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~m--g~ke~~~~~~~~  454 (460)
T KOG3771|consen  402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLM--GVKESDWNGLFP  454 (460)
T ss_pred             ceeccccccccccccccccCCCEEEEecCCCccchhhHHHh--hhccccccccee
Confidence            457789999999999999999999887754 3567777776  655555555553

>KOG0199|consensus

Probab=94.55  E-value=0.046  Score=44.23  Aligned_cols=51  Identities=27%  Similarity=0.384  Sum_probs=41.5

Q ss_pred             ccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCcccc
Q psy9669          61 AIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        61 ~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      +...++....+.|.+.+||.|.|++... ..||.|.....++.|.||.+.+.
T Consensus       379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            3445667788899999999999888654 46999987778899999998776

>KOG4429|consensus

Probab=94.54  E-value=0.022  Score=40.74  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..+.|.+.+...+++....|+++.+-++..++||.++.+  |..|-||+.+++..
T Consensus       366 cdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~--gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  366 CDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLL--GDFEHFHAAEIEEA  418 (421)
T ss_pred             hhhhhccccccccccCCcccceeeecCcccCCCceeeec--cccCCCcHHHHHHh
Confidence            456788999999999999999998888888999999976  78888998887653

>KOG0298|consensus

Probab=94.54  E-value=0.009  Score=50.57  Aligned_cols=51  Identities=29%  Similarity=0.658  Sum_probs=41.8

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++.....|+||.+.+.+--.+..|||.+|..|..-|+..+  ..||+|+....
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~--s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS--SRCPICKSIKG 1199 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh--ccCcchhhhhh
Confidence            3556678999999995577888999999999999999865  47999985443

>KOG3725|consensus

Probab=94.51  E-value=0.014  Score=40.94  Aligned_cols=54  Identities=24%  Similarity=0.446  Sum_probs=45.2

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+++++||++....++++-.++++.|..-  -+.+|..|+  ..++.|-+|..|++.+
T Consensus       319 kArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgE--rGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  319 KARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGE--RGNKKGKVPVTYLELL  374 (375)
T ss_pred             ceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhh--hcCCCCCcchhHHHhc
Confidence            57789999999999999999999987764  356799998  5789999999998643

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.36  E-value=0.35  Score=25.52  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=29.0

Q ss_pred             ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCe
Q psy9669         128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM  166 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v  166 (173)
                      -..+..|..+.+... .++|.+.+.  +|.+||++.+.+
T Consensus        18 v~~l~~g~~v~v~~~-~~~W~~V~~--~g~~GWv~~~~l   53 (55)
T PF06347_consen   18 VARLEPGVPVRVIEC-RGGWCKVRA--DGRTGWVHKSLL   53 (55)
T ss_pred             EEEECCCCEEEEEEc-cCCeEEEEE--CCeEEeEEeeec
Confidence            467788988888755 678999994  599999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG3771|consensus

Probab=94.07  E-value=0.037  Score=42.08  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=40.2

Q ss_pred             CCCceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccc
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV  110 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v  110 (173)
                      ..+....++++|.+...++|+|..|+.|.|+... .+.||.|..+  |..+-++.+|+
T Consensus       398 ~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~m--g~ke~~~~~~~  453 (460)
T KOG3771|consen  398 GFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLM--GVKESDWNGLF  453 (460)
T ss_pred             CCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHh--hhcccccccce
Confidence            3444577899999999999999999999888753 4468888754  44444444444

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=94.06  E-value=0.12  Score=35.51  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             ceecCCEEEEEEEcCC-CEEEEEeCCCCccCcCCCccccCCcceecccCCC----------CCCcceeecCCCEEEEEEc
Q psy9669          74 ELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPP----------NSEYELELRVGDLIYVHKK  142 (173)
Q Consensus        74 ~~~~g~~v~v~~~~~~-~w~~~~~~~~~~~G~~p~~~v~~~~~~~~~~~~~----------~~~~el~~~~g~~v~v~~~  142 (173)
                      ++..|+.+.|+..... +|...+. ..|+.|||++.++........+-...          ...-.-.++.|..+.+...
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~-~~g~t~wi~~~~lt~e~s~~~~~p~~~~nVr~~t~t~~~v~g~~~~~t~~~~~sk  127 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRD-SSGRTGWILSKNLTSEPSSNERVPDLELNVRELTKTLSNVDGTWKQGTAVMQISK  127 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEe-cCCceEEEechhhccccccceecCchhhhhhhcccchhhhhhhhhcCcEEEEEee
Confidence            5788999999998655 6888885 57999999998876542211111000          0011223566777777777


Q ss_pred             CCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         143 RDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       143 ~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ..++|....+.  ++.|++-..|+..
T Consensus       128 ~~~~w~~~~~~--~k~~~vs~q~~~~  151 (205)
T COG3103         128 TQNNWYIITLK--GKNGYVSGQLVTA  151 (205)
T ss_pred             ccccchhhhhh--cccchhhhhheec
Confidence            77899988887  8999887776654

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.91  E-value=0.077  Score=27.98  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=29.0

Q ss_pred             cceecCCEEEEEEEcCCC-EEEEEeCCCCccCcCCCcccc
Q psy9669          73 LELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        73 l~~~~g~~v~v~~~~~~~-w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      -.+..|+.+.++.....+ |.+... ..+..||++..|++
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~-~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRT-YDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEE-ETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEEC-cCCcEEEEEccccC
Confidence            357889999999987665 988843 45779999998863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3705|consensus

Probab=93.84  E-value=0.05  Score=40.77  Aligned_cols=54  Identities=33%  Similarity=0.511  Sum_probs=45.2

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ..+.++..++..+++.++.||.|.+.+..=+|.-+|+...+++.|+||+--|++
T Consensus       512 ~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  512 VIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             eEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            456777888888999999999999888766777788877789999999977765

>KOG2034|consensus

Probab=93.76  E-value=0.029  Score=45.89  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=29.4

Q ss_pred             cccCCcccccccccc-CCCeeecCCCCCChhhHHHHHh
Q psy9669           6 LNDLLECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVS   42 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~-~~~~~~~Cgh~fc~~Cl~~~~~   42 (173)
                      ++..-.|.+|...+- .+-.+.+|||.||.+||.+...
T Consensus       814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            456678999998653 4557789999999999977654

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.76  E-value=0.036  Score=24.60  Aligned_cols=9  Identities=22%  Similarity=0.700  Sum_probs=4.6

Q ss_pred             ccccccccc
Q psy9669          11 ECSVCLDRL   19 (173)
Q Consensus        11 ~C~iC~~~~   19 (173)
                      +||-|....
T Consensus         2 ~CP~C~~~V   10 (26)
T PF10571_consen    2 TCPECGAEV   10 (26)
T ss_pred             cCCCCcCCc
Confidence            355555544

Several members are annotated as putative helicases.

>KOG0824|consensus

Probab=93.74  E-value=0.12  Score=37.17  Aligned_cols=52  Identities=23%  Similarity=0.649  Sum_probs=39.1

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      .++-.|-+|...+..+...-.|+|.||..|.+.|....+  .||.|+.......
T Consensus       103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~--~~~d~~~~~~pv~  154 (324)
T KOG0824|consen  103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN--DCPDCRGKISPVL  154 (324)
T ss_pred             CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhh--ccchhhcCcCcee
Confidence            456678889988865666667999999999999988543  5888875554433

>KOG1100|consensus

Probab=93.57  E-value=0.046  Score=37.66  Aligned_cols=42  Identities=31%  Similarity=0.717  Sum_probs=31.4

Q ss_pred             CCccccccccccCCCeeecCCC-CCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh-~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .-.|..|...- ....++||.| ..|..|=..      ...||+|+....
T Consensus       158 ~~~Cr~C~~~~-~~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~  200 (207)
T KOG1100|consen  158 MRSCRKCGERE-ATVLLLPCRHLCLCGICDES------LRICPICRSPKT  200 (207)
T ss_pred             cccceecCcCC-ceEEeecccceEeccccccc------CccCCCCcChhh
Confidence            34488888766 5688899999 689999754      235999986553

>KOG3565|consensus

Probab=93.41  E-value=0.016  Score=46.37  Aligned_cols=56  Identities=23%  Similarity=0.604  Sum_probs=45.9

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..+.+.|.+.+++++++.+|+++.+++.. .+||=+++....+..|+||++|++...
T Consensus       581 ~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  581 SKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             eecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            45678899999999999999999887765 568888883336899999999998654

>KOG3268|consensus

Probab=93.35  E-value=0.057  Score=35.68  Aligned_cols=30  Identities=23%  Similarity=0.639  Sum_probs=22.7

Q ss_pred             cCCCCCChhhHHHHHhcc----cc-----cCCCCCCCCC
Q psy9669          27 PCQHTFCKKCLEEIVSSH----KE-----LRCPECPTFV   56 (173)
Q Consensus        27 ~Cgh~fc~~Cl~~~~~~~----~~-----~~CP~Cr~~i   56 (173)
                      .||..||+-||..|++.-    +.     -.||.|..++
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi  227 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI  227 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence            599999999999999831    11     2499997654

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=93.17  E-value=0.22  Score=38.65  Aligned_cols=41  Identities=22%  Similarity=0.496  Sum_probs=34.0

Q ss_pred             ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      --++..|+.|.++....+||++.+.. +|+.|||-..|+...
T Consensus       102 Igsl~~G~~V~Vl~~~~ngW~kI~~~-~GktGwV~~~YLs~~  142 (481)
T PRK13914        102 ITSIKGGTKVTVETTESNGWHKITYN-DGKTGFVNGKYLTDK  142 (481)
T ss_pred             eeeecCCCEEEEeecccCCeEEEEcC-CCCEEEEecccccCC
Confidence            35688999999976557899999986 689999999998764

>KOG3705|consensus

Probab=93.07  E-value=0.073  Score=39.94  Aligned_cols=55  Identities=31%  Similarity=0.512  Sum_probs=44.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +.+++++..++..+++.++.||.+.|-...-+|.-.|+...+++.|.||+--+.+
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            4567888899999999999999998877666666677766678999999865544

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=92.70  E-value=0.3  Score=33.54  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=34.5

Q ss_pred             ceeecCCCEEEEEEcCCC-CeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         128 ELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~-~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      --+++.||.+.++..... +|...+.. .|+.||||..++....
T Consensus        47 ~~~i~~Ge~vtvl~~~~~~~~~qI~~~-~g~t~wi~~~~lt~e~   89 (205)
T COG3103          47 VGSIKAGEKVTVLGTDGNTGYYQIRDS-SGRTGWILSKNLTSEP   89 (205)
T ss_pred             eeEecCCcEEEEEEEcCcccEEEEEec-CCceEEEechhhcccc
Confidence            346889999999988655 79999987 8999999998876654

>KOG3039|consensus

Probab=92.62  E-value=0.06  Score=37.54  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS   43 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~   43 (173)
                      +.+.+.--|..|+..+ ..|++.+=||.||..||.+++..
T Consensus        38 DsiK~FdcCsLtLqPc-~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   38 DSIKPFDCCSLTLQPC-RDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cccCCcceeeeecccc-cCCccCCCCeeeeHHHHHHHHHH
Confidence            4566777899999999 89999999999999999887653

>KOG3565|consensus

Probab=92.39  E-value=0.047  Score=43.87  Aligned_cols=64  Identities=22%  Similarity=0.467  Sum_probs=52.3

Q ss_pred             CCCCCCCceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        50 P~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      |.-..+++...+++.|.++.++++++..|+++.++... .++|-+++.+..+..|++|.+|++..
T Consensus       572 ~~~~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  572 PIPSPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             CCCCCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            55566777888999999999999999999999877764 55787777555688999999998643

>KOG1815|consensus

Probab=92.30  E-value=0.06  Score=41.62  Aligned_cols=37  Identities=24%  Similarity=0.694  Sum_probs=30.5

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS   43 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~   43 (173)
                      ....+|.||.+........+.|||.||..|...++..
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~  104 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT  104 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence            3457999999988335788899999999999998873

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=91.58  E-value=0.2  Score=41.01  Aligned_cols=50  Identities=20%  Similarity=0.517  Sum_probs=40.7

Q ss_pred             ccCCcccccccc-ccCCCeeecCCCC-----CChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDR-LDTSSKVLPCQHT-----FCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~-~~~~~~~~~Cgh~-----fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +++-.|.||... ....|..-||..+     .|.+||-+|...++...|-+|..++
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            456799999964 3267888899887     4999999999988888999998655

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=91.57  E-value=0.32  Score=26.32  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             cceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccc
Q psy9669          73 LELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV  110 (173)
Q Consensus        73 l~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v  110 (173)
                      ..+..|+.+.++....++|..... ..|..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~-~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITY-GSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEc-CCCCEEEEEeeee
Confidence            357789999998875558998884 4588999977654

>KOG3579|consensus

Probab=91.10  E-value=0.19  Score=35.95  Aligned_cols=37  Identities=30%  Similarity=0.792  Sum_probs=30.2

Q ss_pred             ccCCccccccccccCCCeeecC----CCCCChhhHHHHHhcc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPC----QHTFCKKCLEEIVSSH   44 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~C----gh~fc~~Cl~~~~~~~   44 (173)
                      .+.+.|-+|++-+ ++.-+..|    .|-||+.|-++.+..+
T Consensus       266 ~apLcCTLC~ERL-EDTHFVQCPSVp~HKFCFPCSResIK~Q  306 (352)
T KOG3579|consen  266 SAPLCCTLCHERL-EDTHFVQCPSVPSHKFCFPCSRESIKQQ  306 (352)
T ss_pred             CCceeehhhhhhh-ccCceeecCCCcccceecccCHHHHHhh
Confidence            4568999999998 77777777    6999999998887754

>KOG4718|consensus

Probab=90.99  E-value=0.11  Score=35.34  Aligned_cols=45  Identities=18%  Similarity=0.552  Sum_probs=38.0

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      +.-.|-+|..+.....++-.|+-.++..|+..+++.  ...||.|.-
T Consensus       180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d  224 (235)
T KOG4718|consen  180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGD  224 (235)
T ss_pred             HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhc
Confidence            445799999987678888899999999999999986  457999953

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=90.54  E-value=0.084  Score=27.93  Aligned_cols=39  Identities=28%  Similarity=0.674  Sum_probs=23.3

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      +.+.||.|...+. ..       .+...|........+...||+|..
T Consensus         1 ~~f~CP~C~~~~~-~~-------~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    1 DSFTCPYCGKGFS-ES-------SLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             CCcCCCCCCCccC-HH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence            4678999998552 21       123344444444444578999975

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3812|consensus

Probab=90.16  E-value=0.1  Score=38.29  Aligned_cols=38  Identities=13%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             cccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCc
Q psy9669          71 DELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGN  108 (173)
Q Consensus        71 ~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~  108 (173)
                      ..++|...|.+.|-++.+++||.|+.-. ....||+|+.
T Consensus        80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp  118 (475)
T KOG3812|consen   80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP  118 (475)
T ss_pred             ceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence            3478999999999999999999998533 3456999974

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.88  E-value=0.058  Score=27.40  Aligned_cols=43  Identities=30%  Similarity=0.872  Sum_probs=22.2

Q ss_pred             ccccccccccCCCeeecCC-CCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669          11 ECSVCLDRLDTSSKVLPCQ-HTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus        11 ~C~iC~~~~~~~~~~~~Cg-h~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      -|.-|.  | ..--+..|. |-.|..||...+..+.  .||+|..++|.
T Consensus         4 nCKsCW--f-~~k~Li~C~dHYLCl~CLt~ml~~s~--~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCW--F-ANKGLIKCSDHYLCLNCLTLMLSRSD--RCPICGKPLPT   47 (50)
T ss_dssp             ---SS---S---SSEEE-SS-EEEHHHHHHT-SSSS--EETTTTEE---
T ss_pred             cChhhh--h-cCCCeeeecchhHHHHHHHHHhcccc--CCCcccCcCcc
Confidence            344454  2 333445665 5569999998887553  69999877653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.27  E-value=0.55  Score=32.41  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             ceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          74 ELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        74 ~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..|+.+.++.... .+|...+. ..|..||++..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~-~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRD-SKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEe-CCCCEEeEEHHHhcCC
Confidence            477899999998765 57888885 5689999999998753

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=88.13  E-value=0.36  Score=25.63  Aligned_cols=32  Identities=22%  Similarity=0.563  Sum_probs=23.5

Q ss_pred             Ccccccccccc---CCCeeecCCCCCChhhHHHHH
Q psy9669          10 LECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIV   41 (173)
Q Consensus        10 ~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~   41 (173)
                      ..|.+|...|.   .....-.||+.||..|.....
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~   37 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI   37 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence            46889987663   344556799999999986543

>smart00249 PHD PHD zinc finger

Probab=87.53  E-value=0.37  Score=24.02  Aligned_cols=30  Identities=27%  Similarity=0.486  Sum_probs=18.8

Q ss_pred             ccccccccccCCC--eeecCCCCCChhhHHHH
Q psy9669          11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEI   40 (173)
Q Consensus        11 ~C~iC~~~~~~~~--~~~~Cgh~fc~~Cl~~~   40 (173)
                      .|.+|........  ....|...||..|+..-
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~   32 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPP   32 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCc
Confidence            4778877541122  22368889999998543

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=87.35  E-value=0.49  Score=26.17  Aligned_cols=35  Identities=20%  Similarity=0.579  Sum_probs=25.6

Q ss_pred             cCCcccccccccc---CCCeeecCCCCCChhhHHHHHh
Q psy9669           8 DLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVS   42 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~   42 (173)
                      +...|..|...|.   ...-.-.||.+||..|......
T Consensus         9 ~~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~   46 (68)
T smart00064        9 EVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAP   46 (68)
T ss_pred             CCCcCcccCccccCcccccccccCCCCcChHHcCCeee
Confidence            3468999987663   3445668999999999875543

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=87.23  E-value=0.39  Score=35.91  Aligned_cols=25  Identities=24%  Similarity=0.778  Sum_probs=19.3

Q ss_pred             CChhhHHHHHhccc-----------ccCCCCCCCCC
Q psy9669          32 FCKKCLEEIVSSHK-----------ELRCPECPTFV   56 (173)
Q Consensus        32 fc~~Cl~~~~~~~~-----------~~~CP~Cr~~i   56 (173)
                      -|.+|+.+|+.+++           +..||+||+.+
T Consensus       315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            48899999988533           25699999865

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3812|consensus

Probab=86.45  E-value=0.3  Score=35.98  Aligned_cols=38  Identities=18%  Similarity=0.566  Sum_probs=30.1

Q ss_pred             cceeecCCCEEEEEEcCCCCeeEEEeCCC-CcEEEecCC
Q psy9669         127 YELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPAS  164 (173)
Q Consensus       127 ~el~~~~g~~v~v~~~~~~~w~~~~~~~~-g~~G~~P~~  164 (173)
                      ..++|+..|.+-+-.+-.+.||-|+.-.. ...||+|+.
T Consensus        80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp  118 (475)
T KOG3812|consen   80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP  118 (475)
T ss_pred             ceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence            36889999998888888899999986543 467999963

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=86.34  E-value=1.8  Score=22.91  Aligned_cols=43  Identities=26%  Similarity=0.678  Sum_probs=29.6

Q ss_pred             CccccccccccC---CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          10 LECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        10 ~~C~iC~~~~~~---~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      -.|-.|...+-.   ...+-.=-.+||..|....+..    .||.|...+
T Consensus         6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~----~CPNCgGel   51 (57)
T PF06906_consen    6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG----VCPNCGGEL   51 (57)
T ss_pred             CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC----cCcCCCCcc
Confidence            357777776631   2444445569999999998853    599998654

This family contains a number of conserved cysteine residues and its function is unknown.

>KOG4185|consensus

Probab=86.28  E-value=0.093  Score=38.26  Aligned_cols=44  Identities=30%  Similarity=0.700  Sum_probs=34.6

Q ss_pred             Ccccccccccc-----CCCeeec--------CCCCCChhhHHHHHhcccccCCCCCCC
Q psy9669          10 LECSVCLDRLD-----TSSKVLP--------CQHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus        10 ~~C~iC~~~~~-----~~~~~~~--------Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      ..|.||...+.     ..|.++.        |||..|..|+...+.... ..||.|+.
T Consensus       208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~  264 (296)
T KOG4185|consen  208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTW  264 (296)
T ss_pred             HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccc
Confidence            45888886653     3466666        999999999999887655 78999984

>KOG0040|consensus

Probab=85.35  E-value=0.017  Score=49.89  Aligned_cols=54  Identities=24%  Similarity=0.561  Sum_probs=47.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++|+|....+.+.+.+.||+..++....-.||.++..  .+.|+||..||+.++
T Consensus       971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~--d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen  971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVN--DRQGFVPAAYVKRLD 1024 (2399)
T ss_pred             HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhh--hhcCcchHHHHHHhc
Confidence            456789999999999999999998888777889999988  889999999987654

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=85.05  E-value=1  Score=25.59  Aligned_cols=49  Identities=22%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             cCCcccccccccc---C-CC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLD---T-SS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~-~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ....|-||-+...   + .+  ....|+-..|+.|.+=-... ....||.|+....
T Consensus         8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-g~q~CpqCkt~yk   62 (80)
T PF14569_consen    8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-GNQVCPQCKTRYK   62 (80)
T ss_dssp             SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-S-SB-TTT--B--
T ss_pred             CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-CcccccccCCCcc
Confidence            3468999998653   1 12  23368889999998643333 4468999986543

>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length

Probab=84.72  E-value=0.56  Score=25.70  Aligned_cols=13  Identities=31%  Similarity=0.894  Sum_probs=9.6

Q ss_pred             CCChhhHHHHHhc
Q psy9669          31 TFCKKCLEEIVSS   43 (173)
Q Consensus        31 ~fc~~Cl~~~~~~   43 (173)
                      .||..||.+|...
T Consensus        11 gFCRNCLskWy~~   23 (68)
T PF06844_consen   11 GFCRNCLSKWYRE   23 (68)
T ss_dssp             S--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5999999999874

The function of this family is unknown.; PDB: 2O35_A 3FYB_B.

>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B

Probab=84.60  E-value=4.4  Score=21.48  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             cceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecC
Q psy9669         127 YELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPA  163 (173)
Q Consensus       127 ~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~  163 (173)
                      .+-.+..|+-|.|++.. +..|..+...  ...|||++
T Consensus        19 Q~s~l~~gtPv~i~H~S~D~~W~fV~t~--~~~GWV~s   54 (54)
T PF12913_consen   19 QNSALHPGTPVYILHTSRDGAWAFVQTP--FYSGWVKS   54 (54)
T ss_dssp             EEEEE-TT-EEEEEEE-TTSSEEEEE-S--S-EEEEEG
T ss_pred             hhcccCCCCCEEEEEECCCCCEEEEecC--CeeEeeeC
Confidence            35678899999888866 5568888876  78999874

>PLN02189 cellulose synthase

Probab=84.42  E-value=1.6  Score=37.28  Aligned_cols=47  Identities=23%  Similarity=0.591  Sum_probs=33.6

Q ss_pred             Ccccccccccc----CCC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669          10 LECSVCLDRLD----TSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus        10 ~~C~iC~~~~~----~~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..|.||-+...    -.+  .+-.|+-..|..|. ++-+......||.|+....
T Consensus        35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK   87 (1040)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence            48999999753    122  22358888999999 4655555568999997665

>KOG2979|consensus

Probab=84.01  E-value=0.56  Score=33.13  Aligned_cols=47  Identities=13%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTF   55 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~   55 (173)
                      ++.||+=...+.++.+...|||.|=.+=+..++......+||+-.+.
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            45788876666577788899999999999999886556789986544

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=83.61  E-value=1.2  Score=23.52  Aligned_cols=32  Identities=19%  Similarity=0.558  Sum_probs=23.8

Q ss_pred             cCCcccccccccc--CC-CeeecCCCCCChhhHHH
Q psy9669           8 DLLECSVCLDRLD--TS-SKVLPCQHTFCKKCLEE   39 (173)
Q Consensus         8 ~~~~C~iC~~~~~--~~-~~~~~Cgh~fc~~Cl~~   39 (173)
                      ....|++|.+.|.  .+ .+.-.||-.+|..|...
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            3468999999883  22 34446999999999865

>KOG2169|consensus

Probab=83.47  E-value=0.85  Score=37.10  Aligned_cols=53  Identities=23%  Similarity=0.464  Sum_probs=39.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc--ccccCCCCCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--HKELRCPECPTFV   56 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~--~~~~~CP~Cr~~i   56 (173)
                      ..+.-.+.||++..-+..+.+-..|.|.-|++=+.-....  .....||+|....
T Consensus       301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~  355 (636)
T KOG2169|consen  301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAA  355 (636)
T ss_pred             ccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccc
Confidence            3466788999999988678888999999998877543332  2346799997544

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=83.32  E-value=1.8  Score=37.13  Aligned_cols=48  Identities=23%  Similarity=0.551  Sum_probs=35.0

Q ss_pred             CCcccccccccc----CCC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           9 LLECSVCLDRLD----TSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         9 ~~~C~iC~~~~~----~~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ...|.||-+...    -.+  .+-.|+-..|..|. ++-+......||.|+....
T Consensus        17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence            348999998753    122  34469999999999 5666555578999997665

>KOG0309|consensus

Probab=83.11  E-value=0.74  Score=37.66  Aligned_cols=42  Identities=21%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             cCCcccccccccc-CCCeeecCCCCCChhhHHHHHhcccccCCCC
Q psy9669           8 DLLECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVSSHKELRCPE   51 (173)
Q Consensus         8 ~~~~C~iC~~~~~-~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~   51 (173)
                      ..+.|.+|.-... ..-++..|||..|.+|-.+|+..+.  .||.
T Consensus      1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred             ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC--cCCC
Confidence            3456777775542 3456778999999999999999754  5775

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=83.04  E-value=0.41  Score=29.86  Aligned_cols=45  Identities=22%  Similarity=0.499  Sum_probs=28.7

Q ss_pred             cCCcccccccccc----CCCeeecCCCCCChhhHHHHHhcccccCCCCCC
Q psy9669           8 DLLECSVCLDRLD----TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP   53 (173)
Q Consensus         8 ~~~~C~iC~~~~~----~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr   53 (173)
                      ..-.|.+|...|.    .......|+|.+|..|-.. ........|-+|.
T Consensus        53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~  101 (118)
T PF02318_consen   53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQ  101 (118)
T ss_dssp             CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHH
T ss_pred             CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhH
Confidence            4568999987542    3557778999999999754 2122334577764

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>KOG0825|consensus

Probab=82.99  E-value=0.77  Score=37.73  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             cCCccccccccccC---CCeee---cCCCCCChhhHHHHHhc----ccccCCCCCCCCC
Q psy9669           8 DLLECSVCLDRLDT---SSKVL---PCQHTFCKKCLEEIVSS----HKELRCPECPTFV   56 (173)
Q Consensus         8 ~~~~C~iC~~~~~~---~~~~~---~Cgh~fc~~Cl~~~~~~----~~~~~CP~Cr~~i   56 (173)
                      +.-+|++|..-+..   .--+.   .|+|.||..||..|..+    .....|++|..-+
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            33456666654421   12233   49999999999999874    2234578886544

>PLN02436 cellulose synthase A

Probab=82.92  E-value=2  Score=36.84  Aligned_cols=48  Identities=23%  Similarity=0.600  Sum_probs=34.0

Q ss_pred             CCcccccccccc----CCC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           9 LLECSVCLDRLD----TSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         9 ~~~C~iC~~~~~----~~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ...|.||-+...    -++  .+-.|+-..|..|. ++-+......||.|+....
T Consensus        36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~   89 (1094)
T PLN02436         36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK   89 (1094)
T ss_pred             CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence            348999998753    122  23358889999999 4555545568999997665

>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein

Probab=82.28  E-value=0.54  Score=36.84  Aligned_cols=54  Identities=24%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc---------c-cccCCCCCCCCCce
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS---------H-KELRCPECPTFVPE   58 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~---------~-~~~~CP~Cr~~i~~   58 (173)
                      +|...+-|..|+.+--..-+...=--.||..||..+-.+         . +-+.||.|...+..
T Consensus         1 pl~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~   64 (483)
T PF05502_consen    1 PLEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV   64 (483)
T ss_pred             CcccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence            356778899998765222222234457999999766432         1 23679999876654

p62 binds directly to the Arp1 subunit of dynactin [, ].

>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.04  E-value=4.4  Score=26.37  Aligned_cols=84  Identities=18%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             eecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCcceecccCCCCC------------Cc--ceeecCCCEEEEE
Q psy9669          75 LRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNS------------EY--ELELRVGDLIYVH  140 (173)
Q Consensus        75 ~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~~~~~~~~~~~~------------~~--el~~~~g~~v~v~  140 (173)
                      +++|.-+.|..+. +.|-+.+ ...|..||+..+.+.-.+-....++....            ..  ...+.+| ++.-+
T Consensus        61 ~k~GlPVEIvqEy-~~WRrir-DadG~egWv~qsllsG~Rtai~apw~~~kg~~i~l~k~~~~~a~V~A~lepg-v~~sl  137 (171)
T COG3807          61 LKKGLPVEIVQEY-DNWRRIR-DADGTEGWVHQSLLSGKRTAIIAPWMRDKGVEINLRKSADDGARVVAKLEPG-VVGSL  137 (171)
T ss_pred             eccCCceehhhhh-hhhhhee-CCCCCceeeeeecccCcceEEecccccCcceeEEEeeCCCCCCeEEEEecCc-eEEEe
Confidence            5667667666653 3454444 57888999887766543311111111111            10  1222232 33345


Q ss_pred             EcCCCCeeEEEeCCCCcEEEecC
Q psy9669         141 KKRDDGWYKGTLQRTGRTGLFPA  163 (173)
Q Consensus       141 ~~~~~~w~~~~~~~~g~~G~~P~  163 (173)
                      ++..++|.+.+..  |.+||+-.
T Consensus       138 ~~C~g~wC~~~~~--g~~GWi~q  158 (171)
T COG3807         138 KKCKGQWCRLTAK--GYSGWISQ  158 (171)
T ss_pred             cccccceEEEEcc--Cccceeec
Confidence            6667889888876  99999753

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=80.53  E-value=3.3  Score=22.20  Aligned_cols=24  Identities=25%  Similarity=0.720  Sum_probs=19.9

Q ss_pred             eecCCCEEEEEEcCCCCeeEEEeC
Q psy9669         130 ELRVGDLIYVHKKRDDGWYKGTLQ  153 (173)
Q Consensus       130 ~~~~g~~v~v~~~~~~~w~~~~~~  153 (173)
                      .++.|+.|.+....+++||.+...
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~V~   25 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAVVT   25 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEEEE
Confidence            468899999888778899998765

Domain in plant sequences with possible chromatin-associated functions.

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.34  E-value=0.32  Score=27.05  Aligned_cols=34  Identities=15%  Similarity=0.549  Sum_probs=16.8

Q ss_pred             ccCCcccccccccc---CCCeeecCCCCCChhhHHHH
Q psy9669           7 NDLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEI   40 (173)
Q Consensus         7 ~~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~   40 (173)
                      ++...|.+|...|.   ..--.-.||+.||..|....
T Consensus         7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~   43 (69)
T PF01363_consen    7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR   43 (69)
T ss_dssp             GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred             CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence            45578999998873   12233369999999998543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression

Probab=80.06  E-value=2.4  Score=25.90  Aligned_cols=47  Identities=21%  Similarity=0.605  Sum_probs=28.5

Q ss_pred             cCCccccccccccC-CCee------ecC---CCCCChhhHHHHHhc-------ccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLDT-SSKV------LPC---QHTFCKKCLEEIVSS-------HKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~~-~~~~------~~C---gh~fc~~Cl~~~~~~-------~~~~~CP~Cr~   54 (173)
                      ....|..|...-.. ....      ..|   .-.||..||......       .....||.||.
T Consensus         6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg   69 (105)
T PF10497_consen    6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG   69 (105)
T ss_pred             CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence            34567777764311 1122      345   667999999665542       23467999984

This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		3e-15
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		7e-08
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		3e-15
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		8e-08
2ct3_A	70	Solution Structure Of The Sh3 Domain Of The Vinexin		2e-14
2ct3_A	70	Solution Structure Of The Sh3 Domain Of The Vinexin		1e-06
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		4e-08
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		2e-04
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		7e-08
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		8e-08
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		1e-07
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		1e-07
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		1e-07
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		4e-07
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		5e-07
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		1e-06
3i35_A	60	Human Sh3 Domain Of Protein Lasp1 Length = 60		6e-07
1ark_A	60	Sh3 Domain From Human Nebulin, Nmr, 15 Structures L		1e-06
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		1e-06
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		2e-06
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		3e-04
1gri_A	217	Grb2 Length = 217		2e-06
1gri_A	217	Grb2 Length = 217		6e-04
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		3e-06
2e5k_A	94	Solution Structure Of Sh3 Domain In Suppressor Of T		4e-06
2e5k_A	94	Solution Structure Of Sh3 Domain In Suppressor Of T		9e-05
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		7e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		7e-06
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		1e-05
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		1e-05
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		2e-05
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		2e-05
2rf0_A	89	Crystal Structure Of Human Mixed Lineage Kinase Map		2e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		2e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		9e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		3e-05
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		3e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		3e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		6e-04
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		3e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		3e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		3e-05
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		3e-05
1fyn_A	62	Phosphotransferase Length = 62		3e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		3e-05
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		3e-05
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		3e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		4e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		4e-05
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		4e-05
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		4e-05
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		4e-05
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		5e-05
2hda_A	64	Yes Sh3 Domain Length = 64		5e-05
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		6e-05
4d8d_A	58	Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant		6e-05
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		6e-05
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		6e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		6e-05
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		6e-05
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		6e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		6e-05
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		7e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		7e-05
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		7e-05
3o5z_A	90	Crystal Structure Of The Sh3 Domain From P85beta Su		8e-05
1efn_A	59	Hiv-1 Nef Protein In Complex With R96i Mutant Fyn S		8e-05
2kt1_A	88	Solution Nmr Structure Of The Sh3 Domain From The P		8e-05
2yup_A	90	Solution Structure Of The Second Sh3 Domain Of Huma		9e-05
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		9e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		9e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		4e-04
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		1e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		1e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		4e-04
2fpf_A	71	Crystal Structure Of The Ib1 Sh3 Dimer At Low Resol		1e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		1e-04
2fpd_A	62	Sad Structure Determination: Crystal Structure Of T		1e-04
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		1e-04
1uhf_A	69	Solution Structure Of The Third Sh3 Domain Of Human		1e-04
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		1e-04
2vwf_A	58	Grb2 Sh3c (2) Length = 58		2e-04
2vwf_A	58	Grb2 Sh3c (2) Length = 58		5e-04
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		2e-04
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		4e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		2e-04
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		2e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		2e-04
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		2e-04
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		3e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		3e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-04
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		3e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		3e-04
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		3e-04
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		4e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-04
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		4e-04
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		4e-04
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		4e-04
2j6f_A	62	N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)		4e-04
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		4e-04
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		5e-04
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		5e-04
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		6e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-04
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		5e-04
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		6e-04
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		6e-04
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		6e-04
2krm_A	57	Rdc Refined Solution Structure Of The First Sh3 Dom		6e-04
1qly_A	58	Nmr Study Of The Sh3 Domain From Bruton's Tyrosine		6e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		6e-04
2de0_X	526	Crystal Structure Of Human Alpha 1,6-fucosyltransfe		6e-04
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		7e-04
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		8e-04
2lcs_A	73	Yeast Nbp2p Sh3 Domain In Complex With A Peptide Fr		8e-04
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		8e-04
1ywo_A	64	Phospholipase Cgamma1 Sh3 In Complex With A Slp-76		9e-04

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y PQ DDELELR G +  V E+C DGWF GTS+RT++ G FPGNYV P
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP +++K
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y PQ DDELELR G +  V E+C DGWF GTS+RT++ G FPGNYV P
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP +++K
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin Protein Length = 70

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+Y Y+PQ +DELELR G    V ++C DGWF G S+RTQ+ G FPGNYVAP
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin Protein Length = 70

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           +R +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP +++
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A++ Y   + +EL+L++G    V  + QDGW KG S  T R+G+FP +YV P
Sbjct: 10  FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           F  +  Y  +   EL+L+ G+ I V  K  DGW KG    TGRTG+FP+ ++
Sbjct: 10  FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++F+K+
Sbjct: 11  KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 61

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +R +  Y    E E+  R GD I   +  DDGW  GT+QRTGRTG+ PA++++
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++F+K
Sbjct: 5   KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVK 54

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 4/55 (7%)
Query: 116 RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           RC V   Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F+K+
Sbjct: 9   RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKE 61

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +    Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F+K+
Sbjct: 22  QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKE 72

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + +  Y P +E ELEL VGD+I V ++ ++GW+ GTL    + GLFP++F+K+
Sbjct: 8   KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNN--KLGLFPSNFVKE 58

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 42  SSHKELRCPECP-TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ 100
           SS      P  P +++ + +AIY Y   K+DEL  + G++  V ++  DGW++G      
Sbjct: 2   SSGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV- 60
Query: 101 RSGVFPGNYV 110
            +G+FPGNYV
Sbjct: 61  -TGLFPGNYV 69

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           K   I  Y  + E EL  + G +IYV KK DDGWY+G +   G TGLFP ++++ 
Sbjct: 19  KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVES 71

>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1 Length = 60

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++R +  Y    E E+  + GD I   ++ DDGW  GT++RTG TG+ PA++++
Sbjct: 5   RYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58

>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           FR +  Y      E+  + GD I   +  D+GW  GT+QRTGRTG+ PA++++
Sbjct: 6   FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A++ + PQ+  EL  +RG V T+  +    W++G  Q   R G+FP NYVAP
Sbjct: 9   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVAP 58

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           Y+A+Y + PQ++++LE+R G + T+ E   + W+KG  Q   R G FP N+V
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFV 59

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 161
           SG     YVA  KF       P    +LE+R GD+I + +  ++ W+KG +Q   R G F
Sbjct: 3   SGSSGNTYVALYKFV------PQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFF 54
Query: 162 PASFMKQ 168
           PA+F+++
Sbjct: 55  PANFVQR 61

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 48  RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
           + P+ PT+V    A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP 
Sbjct: 153 QVPQQPTYVQ---ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPR 207
Query: 108 NYVAPAK 114
           NYV P  
Sbjct: 208 NYVTPVN 214

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
           P   + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP +++
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 210

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P ++  + Y  +++DEL L +GS  TV E+C DGW++G+     + G FP NYV
Sbjct: 1   IPAFVK-FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYN--GQIGWFPSNYV 52

>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell Receptor Signaling 1 Length = 94

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPA 113
            IYPY PQ DDELEL  G    ++   Q    +GW  GTS  T  SG+ P NY+  A
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77

>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell Receptor Signaling 1 Length = 94

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
            + I PY P ++ ELEL  GD I++         +GW  GT   TG +GL P +++ ++D
Sbjct: 19  LQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD 78

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 58  EYI-AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           EY+ A+Y + PQ+D +L L+ G    + E+    W+KG+     R+G+FP NYV PA
Sbjct: 3   EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA 57

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
           V  + A+Y ++P+  DEL +  G +  +T+     W+KGTS+   R+G+ P NYVA    
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYVAEQAE 71
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF 172
               P    +      + G+L ++ +  D+      L + G T L+ A      D  
Sbjct: 72  SIDNPLHEAA------KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A++ + PQ+  EL  +RG V T+  +    W++G  Q   R G+FP NYV P
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVCP 56

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A++ + PQ+  EL  +RG V T+  +    W++G  Q   R G+FP NYV P
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVCP 56

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P ++  + Y  +++DEL L  GS  TV E C DGW++G+     + G FP NYV
Sbjct: 2   IPAFVX-FAYVAEREDELSLVXGSRVTVXEXCSDGWWRGS--YNGQIGWFPSNYV 53

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P Y+  + Y  +++DEL L +G+   V E+C DGW++G+     + G FP NYV
Sbjct: 5   MPAYVK-FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 56

>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10 Sh3 Domain Length = 89

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 57  PEYIAIYPYKPQKDDELELRRGS-VYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVA 111
           P + A++ Y+   D+EL LRRG  V  +++ C     +GW+ G    + R GVFP NYVA
Sbjct: 30  PVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTG-QLPSGRVGVFPSNYVA 88
Query: 112 P 112
           P
Sbjct: 89  P 89

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
            I+PY+ Q DDEL ++ G + T+  + C D GW++G  +   R GVFP N+V
Sbjct: 7   VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 56

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
           + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +F+K
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 1   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 59

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
            I+PY+ Q DDEL ++ G + T+  + C D GW++G  +   R GVFP N+V
Sbjct: 14  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 63

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
           + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +F+K
Sbjct: 13  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 64

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P++++ +
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           V  AKF     +   +E EL    GD+I+V +  + GW++GTL   GRTG FP++++++
Sbjct: 10  VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTGWFPSNYVRE 62

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
            I+PY+ Q DDEL ++ G + T+  + C D GW++G  +   R GVFP N+V
Sbjct: 8   VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 57

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 2   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 2   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P++++ +
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 61

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 1   VTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV P
Sbjct: 5   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTP 54

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
            I+PY+ Q DDEL ++ G + T+  + C D GW++G  +   R GVFP N+V
Sbjct: 12  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 61

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 1   VTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 1   TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 59

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +P Y+  + Y  +++DEL L +G+   V E+C DGW++G+     + G FP NYV
Sbjct: 18  MPAYVK-FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 69

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>pdb|2HDA|A Chain A, Yes Sh3 Domain Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           V  ++A+Y Y+ +  ++L  ++G  + +    +  W++  S  T ++G  P NYVAPA
Sbjct: 5   VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPA 62

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + +  +    + EL L  GD++ +H+K+++GW+ G+L   G+ G FPA+++++
Sbjct: 11  KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEE 61

>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant Length = 58

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           V  ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 1   VTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +A  +   +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SF+K
Sbjct: 16  MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV P  
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPVN 58

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R    +   S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++++
Sbjct: 5   RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 54

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV P  
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPVN 58

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 107 GNYV---APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
           GN V   A  +   +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP 
Sbjct: 166 GNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPL 223
Query: 164 SFMK 167
           SF+K
Sbjct: 224 SFVK 227

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +  A+F     +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP++++++
Sbjct: 12  IVKARFN----FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVRE 64

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 13  TGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
           + I +Y Y  Q DDEL   +G +  V  +    W+KG  + + + G+FP NYV     + 
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYV-----KL 56
Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
                P+ ++  +L + D++   +++  G+
Sbjct: 57  TTDMDPSQQWCSDLHLLDMLTPTERKRQGY 86

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SF+K
Sbjct: 9   ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57

>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit Of Phosphoinositide 3-Kinase (Pi3k) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
           +Y A+YP++ ++ ++LEL  G V  V+             ERC    GW  G ++RT++ 
Sbjct: 13  QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 73  GDFPGTYV 80

>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3 Domain Length = 59

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens, Northeast Structural Genomics Consortium Target Hr5531e Length = 88

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
           +Y A+YP++ ++ ++LEL  G V  V+             ERC    GW  G ++RT++ 
Sbjct: 8   QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 67
Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 68  GDFPGTYV 75

>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Vinexin Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 126 EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
           E EL  R G+ I + +K ++ WY+G +  TGR G+FPAS+++ S
Sbjct: 31  EVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS 74

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T V  ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 13  TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           EY A+Y Y  Q  DEL+L  G +  V    +DGW+  T +R  + G  PG+Y+
Sbjct: 10  EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYL 60

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           ++R +  Y   +  EL+L  GD++ V  + +DGW+  T++R G+ G  P S++++
Sbjct: 10  EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLEK 62

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R    +   S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++++
Sbjct: 11  RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVP 120
           A+Y ++P+ D EL  R G + T+T +  + W++G      +SG FP +YV     + +VP
Sbjct: 18  ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHG--QSGFFPLSYV-----QVLVP 70
Query: 121 YP 122
            P
Sbjct: 71  LP 72

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  + P ++ EL  R GDLI +  + D+ WY+G L   G++G FP S+++
Sbjct: 17  KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66

>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +
Sbjct: 10  RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYY 59

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           IA+Y Y+   DDE+      + T  E   DGW++G  +   R G+FP NYV
Sbjct: 13  IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 61

>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold Protein Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +
Sbjct: 7   RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYY 56

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           ++A+Y Y+ + + +L  ++G    +    +  W+   S  T R+G  P NYVAP+
Sbjct: 3   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVAPS 57

>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Intersectin 2(Kiaa1256) Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           EYIA+YPY   +  +L    G    VT++  + W   T     RSG+FP NYV P
Sbjct: 10  EYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWW---TGSIGDRSGIFPSNYVKP 61

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           ++A+Y Y+ +  ++L  ++G  + +    +  W++  S  T +SG  P NYV PA
Sbjct: 30  FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA 84

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 57  PEYI-AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P Y+ A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
            P   + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP +++
Sbjct: 1   GPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 42  SSHKELRCPEC----PTFVP--EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT 95
           +SH +L  P      P F P  + IA+Y Y    +DEL   +G +  V  +    W++G 
Sbjct: 14  ASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG- 72
Query: 96  SQRTQRSGVFPGNYV 110
            +    +G+FP NYV
Sbjct: 73  -EINGVTGLFPSNYV 86

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP++++K +
Sbjct: 43  YAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLFPSNYVKMT 89

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           V  AKF     +   +E EL    GD+I+V +  + GW++GT    GRTG FP++++++
Sbjct: 8   VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYVRE 60

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y+   DDE+      + T  E   DGW++G  +   R G+FP NYV
Sbjct: 14  VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 62

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           V  AKF     +   +E EL    GD+I+V +  + GW++GT    GRTG FP++++++
Sbjct: 8   VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYVRE 60

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 106 PGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           P   V  AKF     +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++
Sbjct: 2   PLGSVVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNY 55
Query: 166 MKQ 168
           +++
Sbjct: 56  VRE 58

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP++++K +
Sbjct: 27  YAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT 73

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYV 110
           E IA Y +K   DDEL  +RG +  V  E C   W+K  ++   + G  P NY+
Sbjct: 11  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYK--AELNGKDGFIPKNYI 62

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 1   MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           E I  + Y+ Q DDEL +  G + T   +   GW++G  Q   R G+FP N+V   K
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFVREIK 57

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           Y    + EL + VG++I   +K D GW++G  Q  GR GLFP +F+++
Sbjct: 10  YQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFVRE 55

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 1   MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 1   MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           +A+Y Y+   DDE+      + T  E   DGW++G  +   R G+FP NYV
Sbjct: 21  VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 69

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
            P  +A+Y Y   + DEL + RG +  V  +  + W+ G+  + Q  G FP N+VA
Sbjct: 6   APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQE-GYFPANHVA 60

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R +  + P +E EL  + GD+I +  + D+ WY+G L   G++G FP ++++
Sbjct: 15  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQSGFFPINYVE 64

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 3   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 60

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y ++  ++DEL  R G V  V +     W+ G  +   + G+FP NYVAP
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 55

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           AIY ++  +D+EL  + G + TV +     W+KG +   Q  G+FP N+V
Sbjct: 22  AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGIGLFPSNFV 69

>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound To Cbl-B Peptide Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK 114
           +YI  Y Y    DDEL +R G +    ++ Q +GW +G  +   R G+FP N+V   K
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVKEIK 58

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y ++  ++DEL  R G V  V +     W+ G  +   + G+FP NYVAP
Sbjct: 10  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 59

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y ++  ++DEL  R G V  V +     W+ G  +   + G+FP NYVAP
Sbjct: 7   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 56

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y ++P+ + EL  + G + T+T +  + W++G       SG FP NYV
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHG--HSGFFPINYV 59

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R +  + P +E EL  + GD+I +  + D+ WY+G L   G +G FP ++++
Sbjct: 11  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 85  VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 142

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y ++  ++DEL  R G V  V +     W+ G  +   + G+FP NYVAP
Sbjct: 8   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 57

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           EL+  VGD I +    +DGW +G+L+  GRTG+FP  F+K
Sbjct: 29  ELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVK 66

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           EL L+ GD++Y++K+ D  WY+G  +  GR G+FP ++++
Sbjct: 23  ELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIE 60

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59

>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of Cd2ap Length = 57

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK 114
           +YI  Y Y    DDEL +R G +    ++ Q +GW +G  +   R G+FP N+V   K
Sbjct: 2   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVKEIK 57

>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase, 20 Structures Length = 58

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           +A+Y Y P   ++L+LR+G  Y + E     W++   +  Q  G  P NYV  A+
Sbjct: 5   VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQ-EGYIPSNYVTEAE 58

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           +A+Y Y P   ++L+LR+G  Y + E     W++   +  Q  G  P NYV  A+
Sbjct: 12  VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQE-GYIPSNYVTEAE 65

>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase, Fut8 Length = 526

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIV 119
           IAIY ++P+  DE+ +  G +  V     DG+ KG +++  R+G++P +Y    K    V
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYP-SYKVREKIET-V 503
Query: 120 PYPPNSEYE 128
            YP   E E
Sbjct: 504 KYPTYPEAE 512

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYV 110
           P+ +A+Y +  ++  +L  R+G V T+ ++   Q+ W+  T +   R G+FP NYV
Sbjct: 4   PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWW--TGRVNGREGIFPANYV 57

>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From Ste20p Length = 73

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           +A+Y ++P+ D+EL L  G +  ++ +   GW    ++   ++G+ P  +V+
Sbjct: 9   VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           A+Y ++  +D+EL  + G + TV +     W++G + R   +G+FP N+V
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG--TGLFPSNFV 57

>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif Length = 64

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 52  CPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            PTF     A++ YK Q++DEL   + ++    E+   GW++G     ++   FP NYV
Sbjct: 2   SPTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRG-DYGGKKQLWFPSNYV 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	4e-27
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-16
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	1e-26
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	9e-20
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-26
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-13
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	3e-26
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-21
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	4e-26
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	9e-22
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-24
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	7e-19
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	7e-24
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	9e-20
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	2e-23
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-12
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-10
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-23
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-21
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	9e-23
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-21
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-22
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	6e-18
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	9e-22
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-20
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-12
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-20
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	2e-11
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-20
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-15
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	1e-19
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-11
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-19
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	4e-16
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-19
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	9e-16
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-19
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-08
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	6e-19
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	3e-18
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	6e-19
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	6e-15
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	2e-18
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	1e-13
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-18
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-09
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	3e-18
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	5e-17
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	3e-18
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-10
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	8e-18
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	2e-14
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-17
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	9e-13
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-17
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	1e-10
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	4e-17
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-12
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	5e-17
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	5e-14
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	6e-17
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	6e-17
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	3e-11
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	6e-17
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-09
3u23_A	65	CD2-associated protein; structural genomics, struc	1e-16
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-15
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-16
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	4e-14
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-13
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	3e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	5e-13
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	2e-14
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	3e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	4e-11
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-16
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	2e-13
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	5e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-12
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-16
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-15
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	5e-16
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-13
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	5e-16
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-11
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	6e-16
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-12
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	6e-16
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-08
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	7e-16
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-11
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	8e-16
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	1e-13
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	8e-16
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-08
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	8e-16
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-09
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-15
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-11
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	1e-15
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	1e-08
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-15
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-13
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-15
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	5e-13
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-15
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-15
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-08
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-15
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	6e-13
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-15
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-14
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-15
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-12
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-15
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	5e-12
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	6e-14
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	3e-15
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-08
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-15
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-10
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	3e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	9e-11
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-15
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	2e-11
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	4e-15
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	3e-14
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	4e-15
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-12
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-15
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-14
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-15
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	6e-11
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	5e-15
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	8e-14
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	6e-15
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-10
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	6e-15
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-13
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	7e-15
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	9e-15
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	7e-12
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-14
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	4e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	6e-12
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	1e-14
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	3e-08
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	1e-14
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-13
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	1e-14
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	5e-11
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-14
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	5e-12
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-14
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-11
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	5e-08
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	2e-14
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	4e-14
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-14
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	5e-13
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	3e-14
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	4e-12
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	3e-14
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-11
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	3e-14
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	3e-12
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	7e-13
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	3e-14
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	3e-11
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-14
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-11
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	4e-14
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	5e-10
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	4e-14
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	5e-14
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	3e-11
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	5e-14
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-10
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	5e-14
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-12
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	6e-14
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	6e-14
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-10
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	6e-14
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	9e-11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	7e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	9e-12
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	7e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	5e-12
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-14
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-12
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	8e-14
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	8e-10
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-14
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-09
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	9e-14
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	5e-11
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-14
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-11
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	9e-14
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-13
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-13
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-11
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-13
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	6e-12
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-13
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-09
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	2e-13
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-10
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-13
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-07
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	2e-13
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	2e-12
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-10
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	2e-13
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	5e-11
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-13
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-12
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-13
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-11
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-13
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	3e-12
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-13
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-07
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	3e-13
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	3e-11
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	3e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	8e-12
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	3e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-09
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	3e-13
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-08
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-13
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-11
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	4e-13
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	5e-10
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-13
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-10
1wxb_A	68	Epidermal growth factor receptor pathway substrate	5e-13
1wxb_A	68	Epidermal growth factor receptor pathway substrate	8e-09
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	6e-13
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-10
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	7e-13
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	2e-12
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	1e-12
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	1e-12
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	1e-12
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	9e-12
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-12
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-07
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-12
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	4e-11
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	8e-10
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-12
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-10
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-12
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	5e-10
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-11
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-12
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	4e-11
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	3e-12
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	3e-07
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-12
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-10
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	3e-12
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	3e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	4e-12
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-10
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	6e-12
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	7e-10
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	6e-12
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-07
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	6e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	9e-10
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	9e-12
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-09
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	9e-12
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	4e-10
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	1e-11
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-09
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	1e-11
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	6e-06
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	1e-11
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	4e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-10
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-09
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	2e-11
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-08
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	2e-11
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	1e-05
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-11
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-10
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	3e-11
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	3e-11
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-07
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	4e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	4e-08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-11
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	6e-11
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	3e-10
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	9e-11
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-10
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	1e-10
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	1e-09
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-10
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	5e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-10
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	3e-10
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-10
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	7e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-10
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-10
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-05
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-10
1i07_A	60	Epidermal growth factor receptor kinase substrate	5e-05
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-10
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-10
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	4e-10
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	3e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-10
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-07
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	8e-10
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	8e-08
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-09
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-09
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	8e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-09
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	3e-09
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	1e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-09
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-09
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	4e-09
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	4e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	8e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-08
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-08
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	5e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	3e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-08
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-08
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-08
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-07
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-07
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	3e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	8e-07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	1e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	1e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-06
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-06
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	4e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	4e-06
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	8e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	6e-05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-04
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	4e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	9e-04

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 96.1 bits (240), Expect = 4e-27
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
              ++A++ Y   + +EL+L++G    V  + QDGW KG S  T R+G+FP +YV P
Sbjct: 7   GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 69.5 bits (171), Expect = 1e-16
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            F  +  Y  +   EL+L+ G+ I V  K  DGW KG    TGRTG+FP+ ++ 
Sbjct: 9   MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 95.0 bits (237), Expect = 1e-26
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y A+Y Y+PQ +DELELR G    V ++C DGWF G S+RTQ+ G FPGNYVAP
Sbjct: 8   TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 77.3 bits (191), Expect = 9e-20
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            +R +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP ++
Sbjct: 9   PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNY 60

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 98.5 bits (245), Expect = 1e-26
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
              +  Y AI  Y+     E+ L  G V  V E+ + GW+    +   + G  P +++ P
Sbjct: 8   FIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIPASFLEP 65

Query: 113 A----------------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG 156
                             +  I  Y      E+ L  G+ + V  K  DGW+        
Sbjct: 66  LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--D 123

Query: 157 RTGLFPASFMKQSD 170
            TG FP+ ++++S 
Sbjct: 124 VTGYFPSMYLQKSG 137

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 39  EIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR 98
           E + S  E   PE       Y+AI  Y   + DE+ L  G    V  +  DGW+      
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD- 122

Query: 99  TQRSGVFPGNYVAPAK 114
              +G FP  Y+  + 
Sbjct: 123 -DVTGYFPSMYLQKSG 137

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 94.3 bits (235), Expect = 3e-26
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             + AI+ + P+ +DELEL       V  + +D W++  + RT   GVFP  Y   
Sbjct: 7   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 81.9 bits (203), Expect = 2e-21
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
               R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +  
Sbjct: 6   EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 93.4 bits (233), Expect = 4e-26
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + AI+ + P+ +DELEL       V  + +D W++  + RT   GVFP  Y   
Sbjct: 6   HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 82.2 bits (204), Expect = 9e-22
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
              R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +  
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 89.9 bits (223), Expect = 2e-24
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQ 97
           S  +++R     T       IYPY PQ DDELEL  G    ++   Q    +GW  GTS 
Sbjct: 6   SGSRDIRFANHET----LQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSL 61

Query: 98  RTQRSGVFPGNYVAPAK 114
            T  SG+ P NY+  A 
Sbjct: 62  TTGCSGLLPENYITKAD 78

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 76.0 bits (187), Expect = 7e-19
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFMKQS 169
             + I PY P ++ ELEL  GD I++         +GW  GT   TG +GL P +++ ++
Sbjct: 18  TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77

Query: 170 D 170
           D
Sbjct: 78  D 78

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 88.0 bits (219), Expect = 7e-24
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +  Y A+Y Y  Q +DE+  R G      +   DGW  GT QRT R+G+ P NY+  
Sbjct: 6   LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 77.3 bits (191), Expect = 9e-20
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            +R +  Y    E E+  R GD I   +  DDGW  GT+QRTGRTG+ PA++
Sbjct: 8   TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANY 59

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 93.4 bits (231), Expect = 2e-23
 Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 50/172 (29%)

Query: 43  SHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS 102
           +   L        +   +  + +  +++ +L   +G    +  +    W++  +      
Sbjct: 134 TEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTT- 192

Query: 103 GVFPGNYVA---------------------------------------------PAKFRC 117
           G+ P NYV                                              PAK + 
Sbjct: 193 GLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252

Query: 118 IVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
                PN     +L ++ G  + V +K  +G YK  L   G+ G  P ++++
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 21/125 (16%)

Query: 63  YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS-------------------- 102
           Y    ++ DE       +    E  +DG      +   +S                    
Sbjct: 78  YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137

Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
            +                +    E +L    G+ + +  K +  W++      G TGL P
Sbjct: 138 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVP 196

Query: 163 ASFMK 167
           A++++
Sbjct: 197 ANYVQ 201

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 11  ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKD 70
           E          S   +       ++      SS      P  P    +            
Sbjct: 205 EFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKA-KVTFDRVPNAYDP 263

Query: 71  DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            +L +++G    VT++  +G +K       + G  P  Y+
Sbjct: 264 TQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYL 301

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 86.5 bits (215), Expect = 2e-23
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
              +A+Y ++P+ D+EL L  G +  ++ +   GW    ++   ++G+ P  +V
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 80.7 bits (200), Expect = 3e-21
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +   +  + P ++ EL L  GD++++  K   GW     +   +TGL P  F
Sbjct: 3   RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEF 54

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 85.0 bits (211), Expect = 9e-23
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y ++P+ D+EL L  G +  ++ +   GW    ++   ++G+ P  +V+  +
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 80.4 bits (199), Expect = 7e-21
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +   +  + P ++ EL L  GD++++  K   GW     +   +TGL P  F
Sbjct: 7   RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEF 58

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 83.9 bits (208), Expect = 3e-22
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
           S     +       +P+      +  ++ DE+ L++  V  V ++ +DGW  G   R   
Sbjct: 3   SGSSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGE 61

Query: 102 SGVFPGNYVAP 112
           +G FP ++   
Sbjct: 62  TGWFPEDFARF 72

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 73.2 bits (180), Expect = 6e-18
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +      +      E+ L+  D++ V ++ +DGW  G   R G TG FP  F +
Sbjct: 19  QVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFAR 71

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 82.7 bits (205), Expect = 9e-22
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            T V  ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 12  GTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71

Query: 113 A 113
            
Sbjct: 72  V 72

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           G+   T R+    G       F  +  Y   +E +L    G+   +    +  W++    
Sbjct: 1   GSMTGTLRTRGGTG----VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSL 56

Query: 154 RTGRTGLFPASFMKQSD 170
            TG TG  P++++   D
Sbjct: 57  TTGETGYIPSNYVAPVD 73

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 80.1 bits (198), Expect = 1e-20
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           + A+Y Y+ + +D+L   +G  + +    +  W++  S  T  +G  P  Y+AP  
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
              F  +  Y   +E +L    G+   +    +  W++     TG TG  P+ +
Sbjct: 5   STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIY 58

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 79.7 bits (197), Expect = 1e-20
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           V  ++A+Y Y   +  +L   +G  + + E     W++  S  T  +G  P NYVAP  
Sbjct: 6   VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           F  +  Y      +L    G+   + +     W++     TG TG  P+++
Sbjct: 9   FVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNY 59

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 79.3 bits (196), Expect = 2e-20
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 59  YIAIYPY-KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             AI PY K    DE+   +G ++ V    +DGW   T+ RT   G+   + V  
Sbjct: 10  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 114 KFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           + R I+PY       E+    GD+  VH + +DGW   T  RT   GL     +++
Sbjct: 9   RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 78.3 bits (193), Expect = 1e-19
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
              V  ++A+Y Y+ +  ++L  ++G  + +    +  W++  S  T +SG  P NYV P
Sbjct: 24  TGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVP 83

Query: 113 AK 114
           A 
Sbjct: 84  AD 85

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 13/76 (17%), Positives = 30/76 (39%)

Query: 95  TSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 154
           +S     S    G       F  +  Y   +  +L  + G+   +    +  W++     
Sbjct: 10  SSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIA 69

Query: 155 TGRTGLFPASFMKQSD 170
           TG++G  P++++  +D
Sbjct: 70  TGKSGYIPSNYVVPAD 85

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
                     + Y  +++DEL L +G+   V E+C DGW++G+     + G FP NYV  
Sbjct: 14  YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYVTE 71

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 68.6 bits (168), Expect = 4e-16
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 106 PGNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
           PG  +        V   Y    E EL L  G  + V +K  DGW++G+    G+ G FP+
Sbjct: 9   PGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPS 66

Query: 164 SFMK 167
           +++ 
Sbjct: 67  NYVT 70

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 76.5 bits (189), Expect = 2e-19
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             +  ++ + P+  +EL++  G++  V ++  D W         + G+ P NY+ P
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATV--MFNGQKGLVPCNYLEP 61

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 67.2 bits (165), Expect = 9e-16
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             R +  + P ++ EL++  G++++V KK +D W        G+ GL P ++
Sbjct: 9   AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNY 58

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 81.9 bits (201), Expect = 3e-19
 Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 53/169 (31%)

Query: 49  CPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGN 108
                       A++ +    +++L  ++G +  + ++ ++ W+        + G+ P  
Sbjct: 127 VILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVP 185

Query: 109 YV------------------------------------------------APAKFRCIVP 120
           YV                                                 P   R I  
Sbjct: 186 YVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQK 245

Query: 121 YPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
             PN+  +  L L VG+L+ V K    G ++G     G+ G FP + ++
Sbjct: 246 RVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
            +        I            L L  G +  VT+    G ++G      + G FP  +
Sbjct: 233 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTH 290

Query: 110 VAP 112
           V  
Sbjct: 291 VRL 293

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 3/130 (2%)

Query: 40  IVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT 99
           I SS      P  P   P  ++    +   D E +     +        D          
Sbjct: 62  INSSGPRPPVPPSPAQPPPGVSPSRLRI-GDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120

Query: 100 QRSGVFPGNYV-APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 158
            R G             R +  +  N E +L  + GD++ +  K ++ W+       G+ 
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKR 179

Query: 159 GLFPASFMKQ 168
           G+ P  ++++
Sbjct: 180 GMIPVPYVEK 189

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 75.1 bits (185), Expect = 6e-19
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 59  YIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             AI PY    D DE+   +G ++ V    +DGW   T+ RT   G+   + V  
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 73.2 bits (180), Expect = 3e-18
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 112 PAKFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
             + R I+PY    +  E+    GD+  VH + +DGW   T  RT   GL     ++
Sbjct: 5   RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 75.8 bits (186), Expect = 6e-19
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 15/67 (22%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRSG 103
           Y A+YP++ ++ ++LEL  G V  V+             ERC    GW  G ++RT++ G
Sbjct: 14  YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73

Query: 104 VFPGNYV 110
            FPG YV
Sbjct: 74  DFPGTYV 80

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 65.4 bits (159), Expect = 6e-15
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 15/70 (21%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGWYKGTLQRT 155
              ++R + P+      +LEL  GD++ V +                   GW  G  +RT
Sbjct: 10  EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERT 69

Query: 156 GRTGLFPASF 165
            + G FP ++
Sbjct: 70  RQRGDFPGTY 79

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 74.7 bits (183), Expect = 2e-18
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 15/70 (21%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
           +Y A+Y YK +++++++L  G + TV              E   +  GW  G ++ T   
Sbjct: 7   QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66

Query: 103 GVFPGNYVAP 112
           G FPG YV  
Sbjct: 67  GDFPGTYVEY 76

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 62.4 bits (151), Expect = 1e-13
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTG 156
             ++R +  Y    E +++L +GD++ V+K                 + GW  G  + TG
Sbjct: 5   GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64

Query: 157 RTGLFPASFMK 167
             G FP ++++
Sbjct: 65  ERGDFPGTYVE 75

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 73.5 bits (181), Expect = 3e-18
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P      IA++ Y+P  D +L   +G    + E+  + W+K  S  T + G  P N+VA 
Sbjct: 3   PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61

Query: 113 A 113
           A
Sbjct: 62  A 62

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
            Y P+ + +L    G+ + + ++  + W+K     TG+ G  P +F+ ++
Sbjct: 14  SYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 79.9 bits (196), Expect = 3e-18
 Identities = 19/87 (21%), Positives = 36/87 (41%)

Query: 82  TVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHK 141
              E  Q      ++       ++            I  + P +  E+ +  GD+I V  
Sbjct: 412 VAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAG 471

Query: 142 KRDDGWYKGTLQRTGRTGLFPASFMKQ 168
              DG+ KG  ++ GRTGL+P+  +++
Sbjct: 472 NHWDGYSKGVNRKLGRTGLYPSYKVRE 498

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 76.4 bits (187), Expect = 5e-17
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 46  ELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVF 105
           +             IAIY ++P+  DE+ +  G +  V     DG+ KG +++  R+G++
Sbjct: 432 DDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLY 491

Query: 106 PGNYVAPAKFRCIVPYPPNSE 126
           P   V        V YP   E
Sbjct: 492 PSYKVREKIE--TVKYPTYPE 510

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 73.4 bits (181), Expect = 3e-18
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
               + + + +A+Y Y P   ++L+LR+G  Y + E     W++    +  + G  P NY
Sbjct: 2   SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNY 60

Query: 110 VAPAK 114
           V  A+
Sbjct: 61  VTEAE 65

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           K   +  Y P +  +L+LR GD  ++ ++ +  W++    + G+ G  P++++ +++
Sbjct: 10  KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 72.3 bits (178), Expect = 8e-18
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +   EY A+Y Y  Q  DEL+L  G +  V    +DGW+    +R  + G  PG+Y+  
Sbjct: 5   SSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTV--ERNGQRGFVPGSYLEK 62

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           ++R +  Y   +  EL+L  GD++ V  + +DGW+       G+ G  P S+++
Sbjct: 10  EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLE 61

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 72.3 bits (178), Expect = 1e-17
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +Y+ + PY  Q  DE+   +G    V  +  +GW+        + G  P +Y+  AK
Sbjct: 9   EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLG--KEGWAPASYLKKAK 64

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 59.2 bits (144), Expect = 9e-13
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 107 GNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 164
           G+  +  + + +   PY   S+ E+    G  + V +K  +GW+       G+ G  PAS
Sbjct: 1   GSSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPAS 58

Query: 165 FMKQSD 170
           ++K++ 
Sbjct: 59  YLKKAK 64

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
            E  +     +A+Y Y+    ++L  ++G    V E   + W+K  S  T++ G  P NY
Sbjct: 19  REAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNY 77

Query: 110 VAPAK 114
           VA   
Sbjct: 78  VARVD 82

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           G +     +               +  Y      +L  + GD + V ++    W+K    
Sbjct: 7   GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSL 65

Query: 154 RTGRTGLFPASF 165
            T + G  P+++
Sbjct: 66  ATRKEGYIPSNY 77

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.8 bits (174), Expect = 4e-17
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            + + +Y+ +  YK Q++ EL L+ G V  V E+ + GW+      ++  G  P  Y+  
Sbjct: 5   SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV--STSEEQGWVPATYLEA 62

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 57.7 bits (140), Expect = 3e-12
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           ++  +  Y      EL L+ G+++ V +K + GW+  +       G  PA++++  +
Sbjct: 10  QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLEAQN 64

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 70.3 bits (173), Expect = 5e-17
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            E IA + +      E+  R+G   T+  +  + W++G    T R G+FP  YV
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 62.6 bits (153), Expect = 5e-14
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +  +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP ++
Sbjct: 16  FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY 60

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 70.5 bits (173), Expect = 6e-17
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT---SQRTQRSGVFPGNYVAPAKF 115
                 Y     ++L L  G +  + ++   GW++G      + ++ G FP ++V     
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69

Query: 116 RCIVPYPPNS 125
                  P+S
Sbjct: 70  SSERASGPSS 79

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 67.5 bits (165), Expect = 8e-16
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFMK 167
           +    Y  +   +L L  G LI + KK   GW++G LQ   +  + G FPAS +K
Sbjct: 11  QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 70.0 bits (172), Expect = 6e-17
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
             EYIA+  +  Q+  +L  ++G +  V E+  DGW+     +    G+ P  Y+ P  
Sbjct: 10  GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNE-GLVPRTYLEPYS 67

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           ++  +  +      +L  + G+++ V +K+ DGW+     + G  GL P ++++   
Sbjct: 12  EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTYLEPYS 67

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 69.2 bits (170), Expect = 1e-16
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +   +   ++ Y PQ +DELEL+ G +  + E  ++GW+ GT     + G+FP N+V  
Sbjct: 4   GSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 61

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 64.6 bits (158), Expect = 8e-15
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 4/60 (6%)

Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +   K +C V   Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++F+K
Sbjct: 3   LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 60

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 69.3 bits (170), Expect = 1e-16
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +++ + +AIY Y   K+DEL  + G++  V ++  DGW++G       +G+FPGNYV  
Sbjct: 14  RSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNG--VTGLFPGNYVES 71

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 63.1 bits (154), Expect = 4e-14
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           G+S  +      P +Y+   K   I  Y  + E EL  + G +IYV KK DDGWY+G + 
Sbjct: 1   GSSGSSGDPPWAPRSYLE--KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN 58

Query: 154 RTGRTGLFPASF 165
             G TGLFP ++
Sbjct: 59  --GVTGLFPGNY 68

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 68.4 bits (168), Expect = 2e-16
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 57  PEYIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P + A Y +       EL L++G V  +T     GW  G      + G  P  Y+ P
Sbjct: 1   PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 114 KFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            F     +P   S  EL L+ GD+IY+ ++   GW  G L    + G  P ++
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAY 54

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 3e-16
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
              + A+Y ++P+  DEL    G +  +T+     W+KGTS+   R+G+ P NYVA 
Sbjct: 7   GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAE 61

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 59.9 bits (146), Expect = 5e-13
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P+++
Sbjct: 9   VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNY 58

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 17/89 (19%)

Query: 94  GTSQRTQRSGVFPGNYV-------------APAKFRCIV--PYPPNSEYELELRVGDLIY 138
           G+S  + + G FP ++V                  + I    Y  N+E EL    G LI 
Sbjct: 1   GSSGSSGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLIN 60

Query: 139 VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           V  K D  W++G +   G TGLFP++++K
Sbjct: 61  VMNKDDPDWWQGEIN--GVTGLFPSNYVK 87

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 39  EIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR 98
           +++    E   P     V + IA+Y Y    +DEL   +G +  V  +    W++G    
Sbjct: 18  KLLGPSSERATPAFHP-VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEING 76

Query: 99  TQRSGVFPGNYV 110
              +G+FP NYV
Sbjct: 77  --VTGLFPSNYV 86

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 3e-16
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             E++AI  Y    + +L   RG    +  +    W+ G  +R    G  P N+V  
Sbjct: 7   GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHVGK 61

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 55.0 bits (133), Expect = 4e-11
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +F  I  Y    E +L    G+ I + ++    W+ G     G  G  PA+ 
Sbjct: 9   EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANH 58

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 68.0 bits (167), Expect = 4e-16
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P   A Y Y   +D+EL           E   D W+ G  ++    G+FP NYV
Sbjct: 1   PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           Y    + EL     D I   +  DD W+ G L++ G  GLFP+++
Sbjct: 9   YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNY 53

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 67.6 bits (166), Expect = 5e-16
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
           +    A+Y + PQ+D +L L+ G    + E+    W+KG+     R+G+FP NYV PA
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNG--RTGIFPANYVKPA 57

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            + P  + +L L+ GD + + +K    WYKG+    GRTG+FPA+++K
Sbjct: 10  QFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 67.7 bits (166), Expect = 5e-16
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 112 PAKFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASF 165
             + + I  +   ++   L  + GDLI +   +  DGW+ G  ++T   G FP S+
Sbjct: 7   RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSY 62

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 66.6 bits (163), Expect = 1e-15
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 57  PEYIAIYPYKP-QKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
               AI+ +        L  + G + T+     +DGW  G S++T+  G FP +Y   
Sbjct: 8   MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 67.6 bits (166), Expect = 5e-16
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             ++ Y PQ +DELEL+ G +  + E  ++GW+ GT     + G+FP N+V  
Sbjct: 5   KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 55

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +C V   Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++F+K
Sbjct: 3   QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 67.7 bits (166), Expect = 5e-16
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT---SQRTQRSGVFP 106
           PE P  V   +A +PYK   +D+L   +     VT      W+ G    S      G+FP
Sbjct: 4   PEVPFKV---VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFP 60

Query: 107 GNYV 110
            ++V
Sbjct: 61  KSFV 64

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASF 165
           P K     PY  + E +L       I V    D  WY G  Q        G+FP SF
Sbjct: 7   PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSF 63

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 67.3 bits (165), Expect = 6e-16
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 57  PEYIAIYPYKPQK-DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           P++ A Y +       EL L++G +  ++     GW         + G  P  Y+ P K
Sbjct: 3   PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 114 KFRCIVPYPPN-SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           KF     +P + S  EL L+ GD++++ +    GW    L    + G  P ++
Sbjct: 4   KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAY 56

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 67.4 bits (165), Expect = 6e-16
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG---TSQRTQRSGVFPGNYVAPA 113
           P+Y+ ++ +K + D+EL  R G V+ V  + +  W+      +      G  P NY+A  
Sbjct: 11  PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER 70

Query: 114 K 114
           +
Sbjct: 71  E 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASF 165
           K+  +  +   ++ EL  R GD+ +V +K +  W+   L   G     G  P ++
Sbjct: 12  KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNY 66

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 69.0 bits (168), Expect = 7e-16
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTV-----TERCQDGWFKGTSQR--------T 99
           P F+ +  A + Y     DEL+L+ G V  V      E   +GW  G  +          
Sbjct: 41  PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 100

Query: 100 QRSGVFPGNYVAP 112
           +  GVFP N+   
Sbjct: 101 KCRGVFPENFTER 113

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-----HKKRDDGWYKGTLQR--------TGRTGL 160
           K +    Y      EL+L+ GD++ V      +++D+GW  G  +             G+
Sbjct: 46  KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105

Query: 161 FPASF 165
           FP +F
Sbjct: 106 FPENF 110

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 67.3 bits (165), Expect = 8e-16
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           F  E IA + +      E+  R+G   T+  +  + W++G    T R G+FP  YV   K
Sbjct: 5   FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + P     I    +  +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP ++
Sbjct: 2   IDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY 59

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 67.2 bits (164), Expect = 8e-16
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                + Y  +++DEL L  GS  TV E C DGW++G      + G FP NYV
Sbjct: 3   PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRG--SYNGQIGWFPSNYV 53

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
            Y    E EL L  G  + V +   DGW++G+    G+ G FP++++ +
Sbjct: 9   AYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--GQIGWFPSNYVLE 55

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 67.5 bits (165), Expect = 8e-16
 Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
              +  Y          RRG    V       W+K  S  T R    PG  VA   
Sbjct: 20  LAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESYIPGICVARVS 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           YP         R G+ + V    + GW+K     TGR    P   
Sbjct: 26  YPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGIC 69

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 67.0 bits (164), Expect = 1e-15
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 42  SSHKELRCPECP-TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRT 99
           SS    R P        + I    +   K  EL  R+G V T+ E C++  W++     +
Sbjct: 2   SSGSSGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61

Query: 100 QRSGVFPGNYVAPAK 114
            + G+     +    
Sbjct: 62  GQEGLLAAGALRERS 76

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTL 152
           G+S R       PG      K      +      EL  R GD++ +     +  WY+   
Sbjct: 4   GSSGRMPTRRWAPGTQCI-TKC----EHTRPKPGELAFRKGDVVTILEACENKSWYRVKH 58

Query: 153 QRTGRTGLFPASFMKQSD 170
             +G+ GL  A  +++  
Sbjct: 59  HTSGQEGLLAAGALRERS 76

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y Y     D+L  ++G    V E   + W+K  S  T++ G  P NYVA   
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            Y   S  +L  + GD + V ++    W+K     T + G  P+++
Sbjct: 11  DYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNY 55

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +        + Y PQ DDELEL+ G +  V    ++GW++G      ++G+FP N++  
Sbjct: 4   GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFIKE 61

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             +  RC V   Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F
Sbjct: 4   GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNF 58

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P   P+  A+Y Y  Q  DEL      +  + +    GW+ G  +   + G+FP NYV  
Sbjct: 2   PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 59.9 bits (146), Expect = 5e-13
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
               +C     Y      EL     D+I + K+   GW+ G L+  G+ GLFP ++
Sbjct: 3   LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNY 56

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 67.0 bits (164), Expect = 1e-15
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 6  LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVP 57
          L ++LEC +C++         K+L C HT C++CLE++++S    +RCP C     
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 66.7 bits (163), Expect = 2e-15
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ-------RSGVFPGN 108
              ++A++ Y+ +  ++L  R G    V +   +GW+       +         G  P N
Sbjct: 7   GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66

Query: 109 YVAPAK 114
           YVA   
Sbjct: 67  YVAEDS 72

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-------GRTGLFPASF 165
            F  +  Y   +  +L  R GD + V     +GW+                 G  P+++
Sbjct: 9   YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 66.0 bits (162), Expect = 2e-15
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           V  + A+Y ++P+  DEL    G +  +T+     W+KGTS+   R+G+ P NYV
Sbjct: 3   VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYV 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 59.5 bits (145), Expect = 6e-13
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
            FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P++++ +
Sbjct: 5   VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                  + Y PQ DDELEL+ G +  V    ++GW++G      ++G+FP N++
Sbjct: 18  RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFI 70

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
              + RC V   Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F
Sbjct: 15  ERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNF 69

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 66.2 bits (162), Expect = 2e-15
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 107 GNYVAPAKFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPAS 164
           G+++   K + I P+   +++  L    GD+I +   +  DGW  G    +   G FP+S
Sbjct: 1   GSHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSS 60

Query: 165 FMK 167
           + K
Sbjct: 61  YTK 63

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 57.7 bits (140), Expect = 3e-12
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 61  AIYPYKP-QKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP 112
            I+P+        L   +G V T+     +DGW  G    ++  G FP +Y   
Sbjct: 11  TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 66.7 bits (163), Expect = 2e-15
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 99  TQRSGVFPGNYVAPAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTG 156
           +  SG  P     P   + I    P +  +  L L VGD++ V +   +G ++G +   G
Sbjct: 3   SGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--G 60

Query: 157 RTGLFPASFMK 167
           R GLFP + +K
Sbjct: 61  RKGLFPFTHVK 71

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
            S   L   +      + I            L L  G +  VT    +G ++G      R
Sbjct: 4   GSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--R 61

Query: 102 SGVFPGNYV 110
            G+FP  +V
Sbjct: 62  KGLFPFTHV 70

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 65.7 bits (161), Expect = 2e-15
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 57  PEY-IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P Y  A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV  
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG--QTGMFPRNYVTA 56

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 57.2 bits (139), Expect = 5e-12
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            P   + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++
Sbjct: 1   GPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNY 53

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 65.7 bits (161), Expect = 3e-15
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             Y+A+Y + PQ++++LE+R G + T+ E   + W+KG  Q   R G FP N+V  
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFFPANFVQR 61

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 58.0 bits (141), Expect = 3e-12
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + P    +LE+R GD+I + +  ++ W+KG +Q   R G FPA+F++
Sbjct: 16  FVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQ 60

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 65.7 bits (161), Expect = 3e-15
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
           +      + ++ Q   EL L++G +  + +     W +G      R G+FP NYV     
Sbjct: 1   MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHG--RLGIFPANYVE---- 54

Query: 116 RCIVPYPPNSE 126
             ++P   +  
Sbjct: 55  --VLPLEHHHH 63

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 62.2 bits (152), Expect = 6e-14
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             R    +   S  EL L+ GD++Y+HK+ D  W +G     GR G+FPA++
Sbjct: 3   AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANY 52

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 65.7 bits (161), Expect = 3e-15
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPAK 114
             E IA Y +    + +L   +G V T+    +D  W+K    +  R G+ P NYV   +
Sbjct: 11  GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKA-KNKVGREGIIPANYVQKRE 69

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMK 167
            P+   CI    +   +E +L    GD++ +     D  WYK    + GR G+ PA++++
Sbjct: 8   WPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQ 66

Query: 168 QSD 170
           + +
Sbjct: 67  KRE 69

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 66.4 bits (162), Expect = 3e-15
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYV 110
            P + A++ Y+   D+EL LRRG    V  +       +GW+ G      R GVFP NYV
Sbjct: 29  GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS-GRVGVFPSNYV 87

Query: 111 AP 112
           AP
Sbjct: 88  AP 89

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPA 163
            PA         Y    + EL LR GD + V  +      D+GW+ G L   GR G+FP+
Sbjct: 26  TPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS-GRVGVFPS 84

Query: 164 SF 165
           ++
Sbjct: 85  NY 86

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 65.3 bits (160), Expect = 3e-15
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             I  Y +  +  DEL ++ G    +  ++    W+      + +SG+ P  ++ P
Sbjct: 4   RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 53.7 bits (130), Expect = 9e-11
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
           +      +   S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F
Sbjct: 4   RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 56

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 65.8 bits (161), Expect = 3e-15
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             A+Y YK ++ DEL   RG++     +   GW+KG    T+    FP NYV  
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVED 62

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            Y      EL    G LI+   K   GW+KG    T     FP+++
Sbjct: 15  DYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNY 59

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 66.3 bits (162), Expect = 4e-15
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                E +A Y +K   + EL  R+G    +  +  + W++G    T R G+FP +YV
Sbjct: 14  VLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 71

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 64.0 bits (156), Expect = 3e-14
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +  + E EL  R G+ I + +K ++ WY+G +  TGR G+FPAS+
Sbjct: 26  FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 64.9 bits (159), Expect = 4e-15
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           I  + Y+ Q DDEL +  G + T   +   GW++G      R G+FP N+V
Sbjct: 5   IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFV 53

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             IV   Y    + EL + VG++I   +K D GW++G +   GR GLFP +F
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNF 52

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            +      A + +K   +DEL + +G +  VT   + GW++GT     R+G FP NYV
Sbjct: 7   GSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYV 62

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 62.3 bits (152), Expect = 8e-14
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
              +        +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP+++
Sbjct: 7   GSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNY 61

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 70.4 bits (171), Expect = 5e-15
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 9   LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQ 68
           L E      +    +  LP   T   K    +     E+R P    ++   +++  +   
Sbjct: 71  LEERFGPDSKSSALAXTLP---TLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLM 127

Query: 69  KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP---AKFRCIVPYPPNS 125
            +D       S Y   +  Q         R  +S    GN V      +   +  +  NS
Sbjct: 128 DEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNS 187

Query: 126 EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           + EL  + GD+I++  + +  W +GT++  G TG+FP SF+K   
Sbjct: 188 KLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILK 230

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 58.9 bits (141), Expect = 6e-11
 Identities = 27/181 (14%), Positives = 44/181 (24%), Gaps = 47/181 (25%)

Query: 27  PCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER 86
             Q     +     V S             P   A++ +      EL  + G V  +  R
Sbjct: 145 VPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSR 204

Query: 87  CQDGWFKGTSQRTQRSGVFPGNYVAPAK-------------------------------- 114
               W +GT +    +G+FP ++V   K                                
Sbjct: 205 INKDWLEGTVRG--ATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEED 262

Query: 115 ----------FRCIVPYPPNSEYELELR--VGDLIYVHKKRDDGWYKGTLQRT-GRTGLF 161
                                +  L  R   GDL+ +    D        +    +  LF
Sbjct: 263 LSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLF 322

Query: 162 P 162
           P
Sbjct: 323 P 323

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 64.9 bits (159), Expect = 5e-15
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
               A + ++   +DEL   +G V  VT   + GW++GT     R+G FP NYV  
Sbjct: 5   SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 61.9 bits (151), Expect = 8e-14
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            P          +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++
Sbjct: 1   GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNY 55

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 65.0 bits (159), Expect = 6e-15
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
             EYIA+YPY   +  +L    G    VT++    W+ G+     RSG+FP NYV P  
Sbjct: 8   GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGD--RSGIFPSNYVKPKD 63

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
              ++  + PY      +L    G+ I V +K D  W+ G++    R+G+FP++++K  D
Sbjct: 7   GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPKD 63

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.1 bits (159), Expect = 6e-15
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            +      A+Y ++ ++DDEL L +G +  + E+ ++GW+ G+     + G FP  YV
Sbjct: 4   GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYV 59

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.8 bits (148), Expect = 3e-13
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             +   C     +    + EL L  GD++ +H+K+++GW+ G+L   G+ G FPA++
Sbjct: 4   GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAY 58

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 64.6 bits (158), Expect = 7e-15
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            T     + +Y Y+ +   EL +++G + T+       W+K       R G  P  Y+  
Sbjct: 3   ETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNG--RQGFVPAAYLKK 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
             K   +V   Y   S  EL ++ GD++ +    +  W+K  +   GR G  PA+++K+ 
Sbjct: 4   TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKL 61

Query: 170 D 170
           D
Sbjct: 62  D 62

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 64.7 bits (158), Expect = 9e-15
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
              +A+Y Y+   DDE+      + T  E   DGW++G  +   R G+FP NYV
Sbjct: 18  ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANYV 69

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 57.4 bits (139), Expect = 7e-12
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 106 PGNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
              Y        +    Y    + E+     D+I   +  DDGW++G  +  GR GLFPA
Sbjct: 9   YDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPA 66

Query: 164 SF 165
           ++
Sbjct: 67  NY 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 111 APAKFRCIVPYPP-NSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +  K + I P+   N++  L    GD++ +   +  DGW  G    T   G FP+S+ K
Sbjct: 6   SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 62.8 bits (153), Expect = 4e-14
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 61  AIYPYKPQKD-DELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            I+P+    +   L   +G V T+     +DGW  G    T+  G FP +Y   
Sbjct: 12  TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYVAPAKFRCI 118
             IY  +   DDEL    G V  VT      W+ G  + + +R GVFP ++V       +
Sbjct: 14  KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI-----L 68

Query: 119 VPYPPNS 125
               P+S
Sbjct: 69  SDSGPSS 75

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 57.3 bits (139), Expect = 6e-12
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASF 165
                R         +++ EL    G++I V  + D  W+ G ++ +  R G+FP SF
Sbjct: 7   GNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 64.2 bits (157), Expect = 1e-14
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y ++  +  +L L RG  Y + E+    W++    +    G  P NYV   K
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            +     ++L L  G    + +K D  W++    + G  G  P+++
Sbjct: 10  DFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNY 54

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 63.8 bits (156), Expect = 1e-14
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            +  A++ Y+  + ++LE + G +  V  +  + W +G S+   + G+FP  +V  +
Sbjct: 6   SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFVEDS 60

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
            Y      +LE + GD+I V  K ++ W +G  +  G+ G+FP  F++ S 
Sbjct: 13  SYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 63.9 bits (156), Expect = 1e-14
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            P  +A+Y Y   + DEL + RG +  V  +  + W+ G+  + Q  G FP N+VA 
Sbjct: 6   APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQE-GYFPANHVAS 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 54.7 bits (132), Expect = 5e-11
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
               +  Y  N   EL +  GD+I V  K ++ W+ G++ + G+ G FPA+ 
Sbjct: 8   TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANH 58

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
            SH         T     +A+Y Y+ +   E+ +++G + T+       W+K       R
Sbjct: 3   GSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVND--R 60

Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYE 128
            G  P  YV       +     + ++E
Sbjct: 61  QGFVPAAYVKK-----LAAAWSHPQFE 82

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 57.8 bits (140), Expect = 5e-12
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 93  KGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 152
           +G+           G  +  A +     Y   S  E+ ++ GD++ +    +  W+K  +
Sbjct: 2   RGSHHHHHHGSDETGKELVLALY----DYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 57

Query: 153 QRTGRTGLFPASF 165
               R G  PA++
Sbjct: 58  --NDRQGFVPAAY 68

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
                     IA+Y Y+   DDE+      + T  E   DGW++G  +   R G+FP NY
Sbjct: 3   LGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANY 60

Query: 110 V 110
           V
Sbjct: 61  V 61

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           Y    + E+     D+I   +  DDGW++G  +  GR GLFPA++
Sbjct: 18  YQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANY 60

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
           SS ++ R P         IA+Y Y+     EL LRR   Y + +  +  W++    R   
Sbjct: 5   SSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-RNGH 63

Query: 102 SGVFPGNYVAPAK 114
            G  P +Y+    
Sbjct: 64  EGYVPSSYLVEKS 76

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           G+S  +      P           +  Y  N   EL LR  +   +    +  W++    
Sbjct: 1   GSSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD- 59

Query: 154 RTGRTGLFPASF 165
           R G  G  P+S+
Sbjct: 60  RNGHEGYVPSSY 71

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
                   A + ++   +DEL   +G V  VT   + GW++GT     R+G FP NYV  
Sbjct: 3   ANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVRE 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           A ++        +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++
Sbjct: 3   ANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNY 57

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
               A + +K Q   EL L++G +  + ++    W++G      R G+FP  Y+
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHG--RVGIFPRTYI 59

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 59.9 bits (146), Expect = 5e-13
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +   +  EL L+ GD++Y++K+ D  WY+G     GR G+FP ++
Sbjct: 16  FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTY 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 62.9 bits (154), Expect = 3e-14
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            A++ + PQ+  EL  +RG V T+  +    W++G      R G+FP NYV P
Sbjct: 6   QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNN--RRGIFPSNYVCP 56

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 57.2 bits (139), Expect = 4e-12
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
            + P    EL  + GD+I +  K D  W++G L    R G+FP++++   +
Sbjct: 10  DFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVCPYN 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 63.0 bits (154), Expect = 3e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                A+Y ++  +D+EL  + G + TV +     W++G + R   +G+FP N+V
Sbjct: 5   ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHR--GTGLFPSNFV 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +    + EL  + G+LI V    D  W++G       TGLFP++F
Sbjct: 14  FEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNF 56

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 63.6 bits (155), Expect = 3e-14
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
                +  A+Y ++  +D+EL  + G +  V +     W+KG + R    G+FP N+V  
Sbjct: 14  NKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHR--GIGLFPSNFVTT 71

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           G+S  +                R +  +    + EL  + G++I V    D  W+KG   
Sbjct: 1   GSSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH 58

Query: 154 RTGRTGLFPASF 165
                GLFP++F
Sbjct: 59  --RGIGLFPSNF 68

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 63.4 bits (155), Expect = 3e-14
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P   P   A+Y ++P+ D EL  R G + T+T +  + W++G      +SG FP +YV  
Sbjct: 10  PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSYV-- 65

Query: 113 AKFRCIVPYP 122
              + +VP P
Sbjct: 66  ---QVLVPLP 72

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 59.6 bits (145), Expect = 7e-13
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + P ++ EL  R GDLI +  + D+ WY+G L   G++G FP S+
Sbjct: 22  FEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSY 64

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 63.3 bits (154), Expect = 3e-14
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            Y+    Y+  +D E+    G    V E+ + GW+          G  P +Y+   +
Sbjct: 10  SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGE--LEGWAPSHYLVLDE 64

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 55.6 bits (134), Expect = 3e-11
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
               +     Y    + E+    G  + V +K++ GW+          G  P+ ++   +
Sbjct: 7   GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLVLDE 64

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           V    A+Y ++  ++DEL  R G V  V +     W+ G      + G+FP NYVAP
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHN--KLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 55.2 bits (134), Expect = 3e-11
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           R +  +    E EL  R G+++ V    +  W+ G L    + GLFPA++
Sbjct: 5   RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANY 52

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 63.1 bits (154), Expect = 4e-14
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           PTF     A++ YK Q++DEL   + ++    E+ + GW++G     ++   FP NYV  
Sbjct: 3   PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEE 61

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASF 165
             K        Y    E EL      +I   +K++ GW++G     G+  L FP+++
Sbjct: 4   TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GKKQLWFPSNY 58

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            A++ +    +++L  ++G +  + ++ ++ W+       +R G+ P  YV  
Sbjct: 7   RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 58

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             R +  +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +
Sbjct: 5   YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPY 55

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 62.7 bits (153), Expect = 5e-14
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA 113
               +A Y +  +   EL LR G V  +  R     GW+KG +    R G FP  YV   
Sbjct: 7   GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTYVEEE 64

Query: 114 KFRCIVPYPPNS 125
                +   P+S
Sbjct: 65  G----IQSGPSS 72

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
             +    +    +      EL LR GD++ ++ +   D GW+KG     GR G FP+++
Sbjct: 4   GSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTY 60

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 62.7 bits (153), Expect = 5e-14
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
              I  Y +  +  DEL ++ G    +  ++    W+      + +SG+ P  ++ P +
Sbjct: 7   KRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
           +      +   S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F
Sbjct: 8   RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 60

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 62.8 bits (153), Expect = 5e-14
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 106 PGNYVAPAKFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
            G+     + R    + P+      L+L+ GD+I +  K   G + G L    + G F  
Sbjct: 3   SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKF 60

Query: 164 SF 165
            +
Sbjct: 61  IY 62

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 58.2 bits (141), Expect = 2e-12
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
              +   P   D L+L++G +  +  +   G + G      + G F   YV
Sbjct: 15  HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKFIYV 63

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 62.7 bits (153), Expect = 6e-14
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             E IA + Y  +   EL  ++G+   + +R  D W++G        G+ P  Y+
Sbjct: 9   PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNG--IDGLIPHQYI 61

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 58.1 bits (141), Expect = 3e-12
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 161
           SG       A AKF     Y   +  EL  + G  + ++++  D W++G     G  GL 
Sbjct: 3   SGSSGEPIEAIAKF----DYVGRTARELSFKKGASLLLYQRASDDWWEGRHN--GIDGLI 56

Query: 162 PASF 165
           P  +
Sbjct: 57  PHQY 60

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 64.3 bits (156), Expect = 6e-14
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVA 111
           P       A Y +  +   EL L+ G +  +  +  Q GW++G      R G FP NYV 
Sbjct: 2   PGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYG--RIGWFPSNYVE 59

Query: 112 P 112
            
Sbjct: 60  E 60

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 111 APAKF-RCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFM 166
            P  F        +      EL L+ GD+I + +KK   GW++G +   GR G FP++++
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPSNYV 58

Query: 167 KQ 168
           ++
Sbjct: 59  EE 60

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 62.2 bits (152), Expect = 6e-14
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
           +YI  Y Y    DDEL +R G +    ++ Q +GW +G      R G+FP N+V
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFV 54

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 53.7 bits (130), Expect = 9e-11
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +     Y    + EL +RVG++I  V K +++GW +G L   GR G+FP +F+K
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 62.3 bits (152), Expect = 7e-14
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             +  AIY ++  +D+EL  + G + TV +     W+KG + +    G+FP N+V
Sbjct: 17  ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQ--GIGLFPSNFV 69

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 56.9 bits (138), Expect = 9e-12
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           K R I  +    + EL  + G++I V    D  W+KG        GLFP++F
Sbjct: 19  KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGIGLFPSNF 68

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 62.3 bits (152), Expect = 7e-14
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                A+  ++   DDEL  R+  + T+  +  +  + G        G FP  +V
Sbjct: 7   GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNG--LRGWFPAKFV 59

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 57.7 bits (140), Expect = 5e-12
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            +  + + EL  R  D+I +  ++D+  + G L   G  G FPA F
Sbjct: 15  DFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKF 58

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 62.3 bits (152), Expect = 7e-14
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
               +A+Y Y+ +   E+ +++G + T+       W+K       R G  P  YV     
Sbjct: 5   KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKK--- 59

Query: 116 RCIVPYPPNSEYEL 129
             + P    S   L
Sbjct: 60  --LDPAQSASRENL 71

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 57.3 bits (139), Expect = 6e-12
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +   K   +    Y   S  E+ ++ GD++ +    +  W+K  +    R G  PA++
Sbjct: 1   MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAY 56

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 62.0 bits (151), Expect = 8e-14
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 112 PAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           P   + I    P +  +  L L VGD++ V +   +G ++G +   GR GLFP + +K
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 51.6 bits (124), Expect = 8e-10
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           I            L L  G +  VT    +G ++G      R G+FP  +V
Sbjct: 7   IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHV 55

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 62.0 bits (151), Expect = 8e-14
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ------RSGVFPGNYVAP 112
            +A+Y Y+ +   E+ +++G + T+       W+K   + T       R G  P  YV  
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63

Query: 113 A 113
            
Sbjct: 64  L 64

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASFMKQSD 170
           Y   S  E+ ++ GD++ +    +  W+K  ++ T       R G  PA+++K+ D
Sbjct: 10  YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            A++ +    +++L  ++G +  + ++ ++ W+       +R G+ P  YV  
Sbjct: 5   RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 54.5 bits (132), Expect = 5e-11
 Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           +  N E +L  + GD++ +  K ++ W+       G+ G+ P  ++++
Sbjct: 10  FNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 56

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 61.9 bits (151), Expect = 9e-14
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            P   A+  Y+ +   +L+  +G V  +  +  + W++G       SG+FP + V
Sbjct: 7   GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEING--VSGIFPASSV 59

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 59.5 bits (145), Expect = 7e-13
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            Y   +  +L+   GD+I + ++ D+ WY+G +   G +G+FPAS 
Sbjct: 15  NYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPASS 58

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           +    A++ +    + EL  + G V  V +     W+ G        G FP ++V  
Sbjct: 10  IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDD--EEGWFPASFVRL 64

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +   +  EL  + GD+I V    +  W+ G +      G FPASF++
Sbjct: 18  DHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFVR 63

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +  A+Y Y  Q  DEL  + G    V ++   GW++G      + G  P NYV  
Sbjct: 4   IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNG--KRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 56.8 bits (138), Expect = 6e-12
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 106 PGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           PG  V     + +  Y   +  EL  + GD I VH+K   GW++G L   G+ G  PA++
Sbjct: 2   PGIQV-----KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN--GKRGWVPANY 54

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 61.1 bits (149), Expect = 1e-13
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           TF     A++ YK Q++DEL   + ++    E+   GW++G     ++   FP NYV  
Sbjct: 1   TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVEE 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 50.7 bits (122), Expect = 1e-09
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASF 165
            Y    E EL      +I   +K+D GW++G     G+  L FP+++
Sbjct: 11  DYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GKKQLWFPSNY 55

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV 110
           + +Y +K ++DDEL++  G   ++       WF      R    G+ P +YV
Sbjct: 7   VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFMKQSD 170
           +    + EL++  G+ + +    D  W+    + R G  GL P S+++  D
Sbjct: 12  FKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAPAK 114
           ++A+Y +    D+ L + +G    V     +G W +  +      G  P  Y+ P  
Sbjct: 8   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPVN 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASF 165
           P  F  +  +  + +  L +  G+ + V     +G W +         G  P+++
Sbjct: 5   PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAY 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR 116
           P    +Y ++P+   EL  + G + T+T +  + W++G       SG FP NYV      
Sbjct: 4   PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHG--ESGFFPINYV-----E 56

Query: 117 CIVPYPPNSEY 127
            IVP   +  +
Sbjct: 57  VIVPLEHHHHH 67

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            + P ++ EL  + GD+I +  + D+ WY+G +   G +G FP ++
Sbjct: 11  DFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINY 54

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 109 YVAPAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
              P   R I    PN+  +  L L VG+L+ V K    G ++G     G+ G FP + 
Sbjct: 3   QNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTH 59

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 61  AIYPYKPQK--DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            I    P       L L  G +  VT+    G ++G      + G FP  +V
Sbjct: 11  VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNG--KRGHFPFTHV 60

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
            +       I+PY+ Q DDEL ++ G + T+  +     GW++G      R GVFP N+V
Sbjct: 4   GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 61

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 54.6 bits (132), Expect = 5e-11
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
             +   C V  PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +F
Sbjct: 4   GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNF 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR 116
           P   A+Y ++P+ + EL  + G + T+T +  + W++G       SG FP NYV      
Sbjct: 8   PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHG--HSGFFPINYV-----E 60

Query: 117 CIVPYPP 123
            +V  P 
Sbjct: 61  ILVALPH 67

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + P +E EL  + GD+I +  + D+ WY+G L   G +G FP ++
Sbjct: 16  FEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINY 58

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 53  PTFVPEY-IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P   PE+ IA + Y  +   EL  ++G+   +  R  + W++G        G+ P  Y+
Sbjct: 2   PLGSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYI 58

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 56.4 bits (137), Expect = 1e-11
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           Y   S  EL  + G  + ++ +  + W++G     G  GL P  ++ 
Sbjct: 15  YVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYIV 59

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 60.8 bits (148), Expect = 2e-13
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           V E +A + Y  +   EL  RRG V  + ER    W++G        G+ P  Y+  
Sbjct: 10  VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNG--MRGLIPHKYITL 64

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 58.1 bits (141), Expect = 3e-12
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
            Y   +  EL  R GD++ +H++    W++G     G  GL P  +
Sbjct: 18  AYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKY 61

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRT 99
           S    L   +    +     +YP+    ++EL   +G    V E+      W+K  + R 
Sbjct: 3   SGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARG 62

Query: 100 QRSGVFPGNYVAPAK 114
           Q  G+ P NYV    
Sbjct: 63  Q-VGLVPKNYVVVLS 76

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGT 151
           G+S  +  S       +     + + P+   +E EL    G+ + V +K   D  W+K  
Sbjct: 1   GSSGSSGLSNGQGSRVLH--VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK 58

Query: 152 LQRTGRTGLFPASF 165
             R G+ GL P ++
Sbjct: 59  NAR-GQVGLVPKNY 71

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 61.7 bits (150), Expect = 3e-13
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV 110
           I +Y +K +K DEL    G    +       WF      R    G+ P  +V
Sbjct: 9   IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASF 165
           +      EL   VG+ +++    +  W+      R G  GL P  F
Sbjct: 14  FKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGF 59

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAP 112
                 ++PY    +DEL  R G +  +  +   + GW+KG      + GVFP N+   
Sbjct: 6   KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFAVQ 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 56.9 bits (138), Expect = 8e-12
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFM 166
             AK  C    PY   +E EL  R G++I++  K   + GW+KG L   G+ G+FP +F 
Sbjct: 3   MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFA 60

Query: 167 KQ 168
            Q
Sbjct: 61  VQ 62

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
           P+ +A+Y +  ++  +L  R+G V T+ ++   Q+ W+ G      R G+FP NYV
Sbjct: 4   PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYV 57

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 50.2 bits (121), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASF 165
            +      +L  R GD+I + KK D  + W+ G +   GR G+FPA++
Sbjct: 11  SFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANY 56

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +   +   +Y ++ +   EL + +G    V +  +  W         RSG  P N + P
Sbjct: 4   GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNE--AGRSGYIPSNILEP 61

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           K + +  +   +  EL +  G+ + V       W        GR+G  P++ 
Sbjct: 9   KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKN--EAGRSGYIPSNI 58

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYV 110
           V    A+Y Y+ Q DDEL    G++  +  +     DG+++G      R GVFP   V
Sbjct: 8   VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNG--RIGVFPSVLV 63

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 55.0 bits (133), Expect = 4e-11
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASF 165
           +           Y   ++ EL    G +I +  K    DDG+++G     GR G+FP+  
Sbjct: 5   SSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIGVFPSVL 62

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 60.5 bits (147), Expect = 4e-13
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP 112
             E  A+Y ++ Q+  +L  + G   TV  +      W++G  +   ++G+FP NYV  
Sbjct: 17  PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRG--QTGIFPANYVTM 73

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGT 151
           G+S   +   +     V       +  +      +L  + GD I V  K D    W++G 
Sbjct: 4   GSSGHERVGNLNQPIEV-----TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK 58

Query: 152 LQRTGRTGLFPASF 165
           L+  G+TG+FPA++
Sbjct: 59  LR--GQTGIFPANY 70

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 60.4 bits (147), Expect = 4e-13
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
                +  A+  +  +KD+ L   +  + TV E+ Q+ W+ G        G FP +YV
Sbjct: 7   GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHG--GRGWFPKSYV 61

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  +    +  L     D+I V ++  + W+ G +   G  G FP S++K
Sbjct: 14  QALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVK 62

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 60.0 bits (146), Expect = 5e-13
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
              +Y +  +  +EL + +  V  V E  +  W   +  R+ ++G  P N +  A 
Sbjct: 10  VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILGEAS 63

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.8 bits (117), Expect = 8e-09
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             + +  +   +  EL +   +++ V +     W   +  R+G+ G  P + 
Sbjct: 9   YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNI 58

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 60.0 bits (146), Expect = 6e-13
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
            T   +  A+Y  K + D EL    G+V+      Q+ GW +GT     ++G+ P NYV
Sbjct: 7   GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNG--KTGLIPENYV 63

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 53.8 bits (130), Expect = 1e-10
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + +       + EL    G +   VH  ++ GW +GTL   G+TGL P ++
Sbjct: 14  KALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENY 62

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 59.4 bits (145), Expect = 7e-13
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SF
Sbjct: 13  FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSF 55

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 58.3 bits (142), Expect = 2e-12
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
               A++ +      EL  + G V  +  R    W +GT +    +G+FP ++V
Sbjct: 5   MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFV 56

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
            P   A++ +      EL  + G V  +  R    W +GT +    +G+FP ++V     
Sbjct: 18  APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFV----- 70

Query: 116 RCIVPYPP 123
           + +  +P 
Sbjct: 71  KILKDFPE 78

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SF+K
Sbjct: 26  DFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 60.1 bits (145), Expect = 1e-12
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYV 110
           +AIY ++     +L L+ G V  + E C   W++G   +     G+FP +++
Sbjct: 63  VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFI 113

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 58.2 bits (140), Expect = 9e-12
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMK 167
             I  +  +   +L L++GD++ + +     WY+G L +     G+FP SF+ 
Sbjct: 63  VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 114

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 58.9 bits (143), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
               IA+Y Y+     EL LR    Y + +  +  W++   +     G  P +Y+ 
Sbjct: 20  ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHE-GYAPSSYLV 74

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
               +  Y  N   EL LR  +  Y+    +  W++    + G  G  P+S+
Sbjct: 22  LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSY 72

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 57  PEY-IAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
            +Y   I+PY+ Q DDEL ++ G + T+  +     GW++G      R GVFP N+V
Sbjct: 2   SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 56

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 55.0 bits (133), Expect = 4e-11
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
           A    + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +F
Sbjct: 1   ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNF 55

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYVAP 112
           A+Y   P   DEL   RG + T+ E+     +GW+K       R G+ P N +  
Sbjct: 12  ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQI 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.5 bits (124), Expect = 8e-10
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFMK 167
              P+   EL    GD++ + ++     +GW+K  L   GR GL PA+ ++
Sbjct: 15  DNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQ 63

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
               A+Y Y  Q+ DEL  + G   T      + GW +G     Q  G++P NYV
Sbjct: 4   VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQ-LGLYPANYV 57

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 52.6 bits (127), Expect = 2e-10
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
           Y    + EL  + GD +    + D  GW +G L   G+ GL+PA++
Sbjct: 12  YDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANY 56

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
            E   +Y Y  + DDE+ +  G   ++  R    GW K  +  T  +G+ P  Y+
Sbjct: 2   MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 51.8 bits (125), Expect = 5e-10
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
           + + +  Y    + E+ +  GD I +  +    GW K     TG TGL P ++
Sbjct: 3   ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTY 55

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 57.5 bits (140), Expect = 2e-12
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
           AIY Y+ Q DDE+ +  G + TV       GW  G        G+FP +Y 
Sbjct: 5   AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYC 53

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 54.8 bits (133), Expect = 3e-11
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
               I  Y    + E+ +  GD+I V +  D  GW  G     G  GLFP S+ K
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 58.1 bits (141), Expect = 3e-12
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
                 I+PY+ Q DDEL ++ G + T+  +     GW++G      R GVFP N+V
Sbjct: 9   KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNG--RRGVFPDNFV 63

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFM 166
             +K  C V  PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +F+
Sbjct: 6   TKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 63

Query: 167 K 167
           K
Sbjct: 64  K 64

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 58.1 bits (141), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP 112
           +     +YP+    ++EL   +G    V E+      W+K  + R Q  G+ P NYV  
Sbjct: 6   LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVVV 63

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 120 PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
           P+   +E EL    G+ + V +K   D  W+K    R G+ GL P ++
Sbjct: 14  PFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNY 60

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            IA+  Y       L   RG +  +      + GW  G++    RSG+FP + V PA
Sbjct: 11  VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGG--RSGLFPADIVQPA 65

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 53.2 bits (128), Expect = 3e-10
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTG 159
           SG     YV       +  Y  ++   L    GDLI +      + GW  G+    GR+G
Sbjct: 3   SGSSGSGYV-----IALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSG 55

Query: 160 LFPASF 165
           LFPA  
Sbjct: 56  LFPADI 61

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
              Y A+YP++ +  DE+    G +  V E+   + GW  G+ Q     G FP NYV
Sbjct: 5   SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQG--NFGWFPCNYV 59

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
           +          P+   +  E+    GD+I V +K   + GW  G+ Q  G  G FP ++
Sbjct: 2   SSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNY 58

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 57.9 bits (140), Expect = 4e-12
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 53  PTFVPEYIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKG----TSQRTQRSGVFPG 107
           P    +  A+  +    D   L +R G V TV E+  DG +KG    + + T R G FP 
Sbjct: 15  PRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPP 74

Query: 108 NYV 110
             V
Sbjct: 75  GIV 77

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 96  SQRTQRSGVFPGNYVAPAKFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ- 153
                 SG+ P   +   K R +  +   +    L +R GD+I V ++  DG +KG +  
Sbjct: 5   HHHHHSSGLVPRGSL---KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHE 61

Query: 154 ---RTGRTGLFPASF 165
               T R G FP   
Sbjct: 62  SQRGTDRIGYFPPGI 76

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 57.4 bits (139), Expect = 6e-12
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
              +  L LR GD++ V+   D  G+Y G L   G  GL PA  
Sbjct: 25  GQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHL 66

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 10/62 (16%)

Query: 59  YIAIYPYKPQK-------DDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYV 110
            IA   Y P            L LR G V  V       G++ G        G+ P + +
Sbjct: 10  MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHLL 67

Query: 111 AP 112
             
Sbjct: 68  DH 69

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 57.4 bits (139), Expect = 6e-12
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC----QDGWFKGTSQRTQRSGVFPGN 108
                 Y A+Y +K +  +EL +       + E         W+        + G  P N
Sbjct: 10  AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNG--KKGYVPSN 67

Query: 109 YVAPAK 114
           Y+   +
Sbjct: 68  YIRKTE 73

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 7/55 (12%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMKQSD 170
            +   +  EL +     + + + +D      W+   +   G+ G  P++++++++
Sbjct: 21  TFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKTE 73

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 57.4 bits (139), Expect = 6e-12
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYV 110
            +   +   +Y Y      EL L    V TV         W  G  +R  + G  P  Y+
Sbjct: 14  SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQKGKVPITYL 71

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 51.6 bits (124), Expect = 9e-10
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASF 165
           +    +  V   Y   +  EL L   ++I V      D  W  G      + G  P ++
Sbjct: 14  SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG--NQKGKVPITY 70

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 56.9 bits (138), Expect = 9e-12
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
             E IA Y +K   DDEL  +RG +  V     D  W+K       + G  P NY+
Sbjct: 9   SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNG--KDGFIPKNYI 62

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
           +      I    +   ++ EL  + GD++ V +++ D  WYK  L   G+ G  P ++
Sbjct: 6   SVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNY 61

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 57.0 bits (138), Expect = 9e-12
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVA 111
           P F     A+  Y       L  +R  + T+T +  ++ WF G      + G FP ++V 
Sbjct: 7   PEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64

Query: 112 PAKFRCIVPYP 122
                   P P
Sbjct: 65  ILLSDVPPPQP 75

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
           R +  Y  +    L  +  D+I +  K   + W+ G L   G+ G FP   ++
Sbjct: 14  RALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQRTQRSGVFPGNYV 110
            A+Y    +  DEL  R+G + TV E+     DGW+  +     R G+ PGN +
Sbjct: 7   KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRL 58

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFMK 167
                S  EL  R GD++ V ++     DGW+  +L   GR G+ P + +K
Sbjct: 11  DNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCI 118
            IA + Y  Q+D EL++++     + +  +  W++  +   + +G  P NYV        
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANR-TGYVPSNYVERKL---- 60

Query: 119 VPYPPNSEY 127
                +  +
Sbjct: 61  ---EHHHHH 66

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
                 Y    + EL+++  + +++       W++       RTG  P++++++
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-NAANRTGYVPSNYVER 58

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A + Y  Q++ EL++++     + +     W++  +   + +G  P NYV    
Sbjct: 10  VVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNK-TGFVPSNYVERKN 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
                  Y    E EL+++  + +++       W++       +TG  P++++++ +
Sbjct: 9   VVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVR-NSMNKTGFVPSNYVERKN 63

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 56  VPEYIAIYPYKPQK------DDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGN 108
           V   +A Y Y P        + EL L  G    V  +  +DG+++G     QR G+ P N
Sbjct: 17  VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQR-GLVPSN 75

Query: 109 YVAPAK 114
           +V   +
Sbjct: 76  FVDFVQ 81

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 114 KFRCIVPYPP------NSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFM 166
                  Y P      N E EL L  G  +YV+   D DG+Y+G L   G+ GL P++F+
Sbjct: 19  LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFV 77

Query: 167 KQ 168
             
Sbjct: 78  DF 79

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 49  CPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGN 108
             + P       A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP N
Sbjct: 151 IEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG--QTGMFPRN 208

Query: 109 YVAP 112
           YV P
Sbjct: 209 YVTP 212

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
           E IA Y +K   DDEL  +RG +  V     D  +   ++   + G  P NY+       
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYIEMKPHPW 60

Query: 118 IVPYPPNSEYELELR 132
                P ++ E  L 
Sbjct: 61  FFGKIPRAKAEEMLS 75

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 62  IYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFP---GNYVAPAKFRCI 118
           +  +K  +D   +     V   +      + + TS    +             P   + +
Sbjct: 105 VQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAL 164

Query: 119 VPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNY 209

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQSD 170
            +   ++ EL  + GD++ V  +  D  WYK  L   G+ G  P ++++   
Sbjct: 8   DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMKP 57

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQD----GWFKGTSQRTQRSGVFPGNYV 110
              A Y +    D+E+  R G +  +  + Q     GW   +    Q +G+ P NYV
Sbjct: 19  VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIPANYV 74

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 107 GNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGTLQRTGRTGLFP 162
            + VA A++     +   S+ E+  R GD++ +  K       GW   +L     TGL P
Sbjct: 16  DHVVARAEY----DFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIP 70

Query: 163 ASFMK 167
           A+++K
Sbjct: 71  ANYVK 75

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           P     +   +  Y ++ +   EL +++  V  V +  +  W+K      Q  G  P N 
Sbjct: 2   PLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQ-EGYVPYNI 59

Query: 110 VAPAK 114
           + P  
Sbjct: 60  LTPYP 64

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
              C   +   +  EL ++  D++ V       W+K      G+ G  P + 
Sbjct: 10  WVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRD-PAGQEGYVPYNI 59

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
            + E EL    GD+I V  + D DG+Y G L   G+ GL P++F
Sbjct: 25  VDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNF 66

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 56  VPEYIAIYPYKPQ-------KDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPG 107
               +A+Y Y P+        + EL    G + TV     +DG++ G      + G+ P 
Sbjct: 7   GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE--LNGQKGLVPS 64

Query: 108 NYVAP 112
           N++  
Sbjct: 65  NFLEE 69

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 53  PTFVPEYIAIYPYKPQKDD--ELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
             F+ +  A+YPY    DD  E+   +  +  V++  +  W+K      +  G+ P NYV
Sbjct: 2   DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGET-GIIPSNYV 59

Query: 111 AP 112
             
Sbjct: 60  QL 61

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 112 PAKFRCIVPYPPNSE--YELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
             K + + PY  + +  YE+     +++ V    +  W+K      G TG+ P+++
Sbjct: 5   IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNY 58

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
              +AIY ++   +  + +  G   ++ E  + DGW +   +     G  P +Y+
Sbjct: 8   GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGG-EGYVPTSYL 61

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
            C+    +  +SE  + +  G+ + + ++   DGW +   +  G  G  P S+
Sbjct: 9   HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSY 60

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.2 bits (133), Expect = 4e-11
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGW--FKGTSQRTQRSGVFPG 107
                    Y++I  Y+   ++    + G    V ER  +GW   +         G  P 
Sbjct: 4   GSSGNLKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPS 62

Query: 108 NYVAPAK 114
           NY+    
Sbjct: 63  NYLEKKN 69

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFMKQSD 170
           +  I  Y  + E     + G  + V ++  +GW+   +        G  P++++++ +
Sbjct: 13  YVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 54.7 bits (132), Expect = 4e-11
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP 57
            L C  C        K+LPC HT C  CLE        ++CP C    P
Sbjct: 5  QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLE-----ASGMQCPICQAPWP 48

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 57.1 bits (137), Expect = 6e-11
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 48  RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
                   +   +  + +  +++ +L   +G    +  +    W++  +     +G+ P 
Sbjct: 110 LAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPA 168

Query: 108 NYVA 111
           NYV 
Sbjct: 169 NYVQ 172

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 21/125 (16%)

Query: 63  YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS-------------------- 102
           Y    ++ DE       +    E  +DG      +   +S                    
Sbjct: 49  YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108

Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
            +                +    E +L    G+ + +  K +  W++      G TGL P
Sbjct: 109 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVP 167

Query: 163 ASFMK 167
           A++++
Sbjct: 168 ANYVQ 172

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 54.8 bits (132), Expect = 9e-11
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 50  PECPTFVPEYIAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSG 103
           P  P+ +    A+Y + P+  + E+ L++G +  +  +         W+K  + +    G
Sbjct: 8   PIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIG 66

Query: 104 VFPGNYVAPAK 114
             P NY+   K
Sbjct: 67  YIPYNYIEIIK 77

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
           P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P ++
Sbjct: 25  PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 72

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 55  FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+ 
Sbjct: 1   MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ-RSGVFPGNYV--APAKFR 116
           +AIY ++     +L L+ G V  + E C   W++G   + +   G+FP +++        
Sbjct: 21  VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKEVTVE 79

Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 154
                      E+ L   ++     +    W +  +  
Sbjct: 80  KRRNTENIIPAEIPL-AQEVTTTLWEWGSIWKQLYVAS 116

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFMK 167
             I  +  +   +L L++GD++ + +     WY+G L +     G+FP SF+ 
Sbjct: 21  VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 72

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 59  YIAIYPYKPQK--------DDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNY 109
           ++A++ Y P          ++EL  + G +  V      DG+++G +    R G+ P N 
Sbjct: 20  FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCA--RLGLIPCNM 77

Query: 110 VAPAK 114
           V+  +
Sbjct: 78  VSEIQ 82

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
           P P  +E EL  + G +I V+  +D DG+Y+G      R GL P + 
Sbjct: 33  PNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNM 77

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           E+ ++ GD++ +    +  W+K  +    R G  PA+++K
Sbjct: 7   EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 44

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 47.1 bits (112), Expect = 5e-08
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 68  QKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
               E+ +++G + T+       W+K       R G  P  YV  
Sbjct: 3   MGPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 45

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             + PY      E+ +++G + T+       W+K   +   R G  P  YV  
Sbjct: 4   PPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 53

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           AP       PY      E+ ++ GD++ +    +  W+K  +    R G  PA+++K
Sbjct: 3   APPLP----PYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 52

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           E+ ++ GD++ +    +  W+K  +    R G  PA+++K+
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 43

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 43.5 bits (103), Expect = 7e-07
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 70  DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             E+ +++G + T+       W+K       R G  P  YV  
Sbjct: 3   PREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKK 43

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
           +S + L           ++A+Y +    D+ L + +G    V     +G +   +Q    
Sbjct: 29  NSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWC-EAQTKNG 87

Query: 102 SGVFPGNYVAPAK 114
            G  P NY+ P  
Sbjct: 88  QGWVPSNYITPVN 100

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
            IA + Y  Q+D EL++++     + +  +  W++  +   + +G  P NYV 
Sbjct: 34  VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANR-TGYVPSNYVE 84

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
             +   + S V   +            Y    + EL+++  + +++       W++    
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-N 70

Query: 154 RTGRTGLFPASFMKQ 168
              RTG  P++++++
Sbjct: 71  AANRTGYVPSNYVER 85

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            + Y +  +   EL + +  V  + +  +  W+K  +     SG  P N +   +
Sbjct: 5   KSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGD-SGFVPNNILDIMR 57

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +    +   +  EL +   D++ +   R   W+K     +G +G  P + 
Sbjct: 5   KSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR-NASGDSGFVPNNI 52

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
             +      +Y YK  + DEL +    V  V E    + W K  ++  Q  G  P  Y+
Sbjct: 10  RNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQV-GYVPEKYL 67

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGL 160
           SG        P   + +  Y  +   EL +   +++ V +  D + W K   +  G+ G 
Sbjct: 3   SGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGY 61

Query: 161 FPASF 165
            P  +
Sbjct: 62  VPEKY 66

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 15/65 (23%), Positives = 25/65 (38%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
                   E IA Y +    + +L   +G V T+    +D  +     +  R G+ P NY
Sbjct: 5   QASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANY 64

Query: 110 VAPAK 114
           V   +
Sbjct: 65  VQKRE 69

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 50  PECPTFVPEYIAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSG 103
           P  P+ +    A+Y + P+  + E+ L++G +  +  +         W+K  + +    G
Sbjct: 8   PIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIG 66

Query: 104 VFPGNYV 110
             P NY+
Sbjct: 67  YIPYNYI 73

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
           P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P ++
Sbjct: 25  PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 72

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 54.7 bits (130), Expect = 7e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVT-----ERCQDGWFKGTSQR--------T 99
           P F+ +  A + Y     DEL+L+ G V  V      E   +GW  G  +          
Sbjct: 139 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLE 198

Query: 100 QRSGVFPGNYVAP 112
           +  GVFP N+   
Sbjct: 199 KCRGVFPENFTER 211

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGRTGL 160
           K +    Y      EL+L+ GD++ V       ++D+GW  G  +             G+
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203

Query: 161 FPASFMKQ 168
           FP +F ++
Sbjct: 204 FPENFTER 211

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 51.9 bits (124), Expect = 8e-10
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 50  PECPTFVP--EYIAIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFP 106
              P      EY  I P        L L  G +  +T+   +  W++G +  T   G FP
Sbjct: 10  LGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFP 69

Query: 107 GNYVAP 112
            N V P
Sbjct: 70  CNRVHP 75

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 46.5 bits (110), Expect = 8e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK 167
           P P      L L  GD++ + K   +  W++G    T   G FP + + 
Sbjct: 26  PPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             + I            L L  G +  VT    +G ++G      R G+FP  +V  
Sbjct: 239 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKI 293

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 25/211 (11%), Positives = 53/211 (25%), Gaps = 60/211 (28%)

Query: 15  CLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELE 74
            L+                 +     + S      P     +     +Y +     ++L 
Sbjct: 84  LLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLP 143

Query: 75  LRRGSVYTVTERCQD------------GWF-----------------KGTSQRTQRSGVF 105
            ++G +  + E+ ++            G                      +  +      
Sbjct: 144 FKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEP 203

Query: 106 PGNYVAPAKFRCIVP-----------------------------YPPNSEYELELRVGDL 136
              Y  P     +                                    +  L L VGD+
Sbjct: 204 AHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDI 263

Query: 137 IYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + V +   +G ++G +   GR GLFP + +K
Sbjct: 264 VKVTRMNINGQWEGEV--NGRKGLFPFTHVK 292

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          ++ ++  C +C+++L  +     C    C  C+   ++  +  +CP C
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHC 64

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 60  IAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYV 110
            A+Y + P+  + E+ L++G +  +  +         W+K  + +    G  P NY+
Sbjct: 11  RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYI 66

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 48.9 bits (117), Expect = 8e-09
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
           P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P ++
Sbjct: 18  PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 65

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L   + CS+C   L  ++ +  C HTFCK C+          RCP+C
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN--RCPKC 56

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 48  RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
           R       V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P 
Sbjct: 77  RAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 136

Query: 108 NYVAPAK 114
           NYVAP+ 
Sbjct: 137 NYVAPSD 143

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 2/140 (1%)

Query: 27  PCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER 86
              +            S       E  T                   + +        + 
Sbjct: 343 STLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDE 402

Query: 87  CQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD- 145
             + +    +                 + R +  Y      EL  + GD +   +  D+ 
Sbjct: 403 SNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQ 462

Query: 146 GWYKGTLQRTGRTGLFPASF 165
           GW KG L   G+ GL+PA++
Sbjct: 463 GWCKGRLDN-GQVGLYPANY 481

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQ 100
                              A+Y Y+ Q+ DEL  + G   T  E   + GW KG      
Sbjct: 414 GDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDN-G 472

Query: 101 RSGVFPGNYV 110
           + G++P NYV
Sbjct: 473 QVGLYPANYV 482

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          LN  L C +C      ++ ++ C H+FCK C+   + + K   CP C
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPIC 56

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           +C +C++ L      LPC HT CK C +  V     L CP C
Sbjct: 16 CQCGICMEIL-VEPVTLPCNHTLCKPCFQSTV-EKASLCCPFC 56

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 61  AIYPYKPQK-DDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYV 110
            +Y +  +  ++EL +  G + TVT      GW +G + + ++ G+ P +YV
Sbjct: 14  VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQ-GLVPTDYV 64

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 128 ELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASF 165
           EL +  G++I V       GW +G   + G  GL P  +
Sbjct: 26  ELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDY 63

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y Y+    ++L  ++G    V E     W+K  S  T++ G  P NYVA   
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 49.2 bits (118), Expect = 8e-09
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 1  MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPEC 52
          M    L ++   + C +CL+ L T    L C H+FC+ CL    ++ +    E  CP C
Sbjct: 8  MASGILVNVKEEVTCPICLELL-TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
           +      + EC++CL         LPC+H FC  C++      K  RC  C   +PE
Sbjct: 7  GNTAPSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGK--RCALCRQEIPE 61

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP 112
             EY  I P        L L  G +  +T+   +  W++G +  T   G FP N V P
Sbjct: 10  FQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK 167
           P P      L L  GD++ + K   +  W++G    T   G FP + + 
Sbjct: 18  PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + +  +C  C + +        CQH  CK CL+      +   CP C
Sbjct: 49 VEETFQCICCQELV-FRPITTVCQHNVCKDCLDR-SFRAQVFSCPAC 93

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 101 RSGVFPGNYVAPA-------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 152
           R G  P  YV              +  Y   S  E+ ++ GD++ +    +  W+K  +
Sbjct: 3   RQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG 94
           T     +A+Y Y+ +   E+ +++G + T+       W+K 
Sbjct: 18 GTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP--E 58
           +     +    C +C +  D   K+ PC H  C  CL     S  +  CP C   +   E
Sbjct: 324 LYCEMGSTFQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIKGTE 381

Query: 59  YIAIYPY 65
            I + P+
Sbjct: 382 PIVVDPF 388

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + D L C +C D +  +  +  C +++C +C+   +    E  CP C
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 44  HKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSG 103
            +               A++ +    +++L  ++G +  + ++ ++ W+        + G
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRG 182

Query: 104 VFPGNYVAP 112
           + P  YV  
Sbjct: 183 MIPVPYVEK 191

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +
Sbjct: 145 FNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPY 188

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          T++DLL C +C +  + +  +  C H +C  C+ + +S   +  CP C
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTC 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           C +CL+     S  LPC H FC  C+   +  +    CP C
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLC 46

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 1  MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPEC 52
          M    L  +   + C +CL+ L        C H+FC+ C+    E   ++  +  CP C
Sbjct: 8  MASSVLEMIKEEVTCPICLELL-KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L D  EC +C+D    +  +LPC H+FC+KC+++    H+   CP C
Sbjct: 11 QLTDEEECCICMD--GRADLILPCAHSFCQKCIDKWSDRHRN--CPIC 54

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
          + C +CLD L      + C H FC KC+ +I  +S    +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          L  LL CS C + L     +  C+H FC  C+ + + +     CP C
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVC 61

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCL-----EEIVSSHKELRCPEC 52
          + C +CL+ L T    L C H+ C+ C+     E + S   +  CP C
Sbjct: 13 VTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L + L+C +C +     +  L C H+FC  C+ E     +++ CP C
Sbjct: 61  LENELQCIICSEYF-IEAVTLNCAHSFCSYCINE--WMKRKIECPIC 104

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
          + C +CLD L      + C H FC KC+ +I  +S    +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.2 bits (109), Expect = 5e-07
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L     C  C + +        C H  CK CL+      +   CP C
Sbjct: 75  LEQSFMCVCCQELV-YQPVTTECFHNVCKDCLQRSF-KAQVFSCPAC 119

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 11 ECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           C +CL+ + TS     VLPC H   + C EE++      RCP C
Sbjct: 7  GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLC 49

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + D L C +C D +  +  +  C +++C +C+   +    E  CP C
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + C +C+D      +         C H FC +CL + + +     CP C
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 62

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIV 119
           I +Y Y  Q DDEL   +G +  V  +    W+KG  + + + G+FP NYV         
Sbjct: 6   IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYVKLTTDMDPS 63

Query: 120 PYPPNSEYELE 130
               +  + L+
Sbjct: 64  QQWCSDLHLLD 74

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
             +   +  Y   ++ EL    G +I V  K D  W+KG +  +G+ GLFP++++K + 
Sbjct: 2   SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKLTT 58

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPEC 52
            CSVCL+ L     ++ C H FCK C+       + +  CP C
Sbjct: 16 ASCSVCLEYL-KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 7  NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
          + +  C++C   L        C       C+ +   S+ E RCP C  + P  I
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          + C +C+D      +         C H FC +CL + + +     CP C
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTC 57

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          T+ D  +C  C   L  S K   C H FC+ C+  ++SS    +C  C
Sbjct: 11 TVEDKYKCEKCHLVL-CSPKQTECGHRFCESCMAALLSSSSP-KCTAC 56

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 9  LLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          ++ C +C+D      +         C H FC +CL + + +     CP C
Sbjct: 3  MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 50

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
            C +C      +  V  C+H FC+ C  E   +    RC  C
Sbjct: 16 FRCFICRQAF-QNPVVTKCRHYFCESCALEHFRATP--RCYIC 55

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
            A++ +    D EL  + G V  V +     W+ G        G FP ++V     + 
Sbjct: 34  EALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFVRLRVNQD 89

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 96  SQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
               Q +     +  +      +  +    + EL  + GD+I V    +  W+ G +   
Sbjct: 14  GGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--A 71

Query: 156 GRTGLFPASFMKQ 168
              G FPASF++ 
Sbjct: 72  DGEGWFPASFVRL 84

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 2  DEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           E  +   LEC VC +   L  S + LPC H F   C+   +  H    CP C
Sbjct: 8  TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVC 58

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          L+  L C +CLD L  +     C H FC  C+   + S     CP C
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTC 96

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCI 118
            IA++ Y+P  D +L   +G    + E+    W+K  S  T + G  P N+VA A     
Sbjct: 15  VIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73

Query: 119 VPY 121
            P+
Sbjct: 74  EPW 76

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)

Query: 11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPEC 52
           C +CL          +  CQ  FC  CL++ V           + CP+ 
Sbjct: 7  GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKEL-RCPEC 52
          +  +LEC +CL+ +        C H FCK C+ ++++  K   +CP C
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 7  NDLLECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
           D +EC +C++ L+          C +  C+ C   I  + +   CP C    PE  A+ 
Sbjct: 9  EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPEDPAV- 66

Query: 64 PYKPQKDDEL 73
           YKP   +EL
Sbjct: 67 -YKPLSQEEL 75

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 5  TLNDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
           LN    C+VCL+      ++   PC+H F +KCL + +   K   CP C
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLC 58

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L    EC +CL  L   +   PC H FCK C+ + +      +CP  
Sbjct: 14 PLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRD-AGHKCPVD 59

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 7  NDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
             + C +C         +  LPC H F K C+   +       CP C
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVC 83

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 10  LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCP 50
           L C +     +       C H F +  ++  +  +    CP
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCP 222

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           + E   + +  C++C   L        C       C+ +   S+ E RCP C
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC 223

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP 53
          L     CS C + L        C H +C  CL  I+SS  +  C  C 
Sbjct: 28 LEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQ-NCAACV 73

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRG---SVYTVTERCQDGWFKGT------SQRTQ 100
            EC   +   +A+  Y       L + RG    V++  +     ++ G+           
Sbjct: 16  QECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAA 75

Query: 101 RSGVFPGNYV 110
           R G FP + V
Sbjct: 76  RLGYFPSSIV 85

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 8/74 (10%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
          + C +C+D      +         C H FC +CL +  S      CP C   +       
Sbjct: 8  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCRKKINHKRYHP 65

Query: 64 PYKPQKDDELELRR 77
           Y         +  
Sbjct: 66 IYIGSGTVSCPICM 79

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 2  DEWTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYI 60
           E +  +  +C VC +    +  +LPC+HT  C  C++         +CP C  FV E  
Sbjct: 8  VEPSEENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQ------QCPMCRQFVQESF 60

Query: 61 AIY 63
          A+ 
Sbjct: 61 ALS 63

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 17/61 (27%)

Query: 11 ECSVCLDRLDTSS-----------------KVLPCQHTFCKKCLEEIVSSHKELRCPECP 53
          +C +C+++L  +S                 ++  C H F   CL  +  +  +    +CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 54 T 54
          +
Sbjct: 87 S 87

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
              + C +C   L        C+H FC+ C+   +       CP C
Sbjct: 20 FVKSISCQICEHILADP-VETSCKHLFCRICILRCLKVMGS-YCPSC 64

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
           L    EC +CL  L  +    PC H FCK C+ + +      +CP  
Sbjct: 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGH-KCPVD 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.93
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.89
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.88
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.88
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.77
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.72
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.72
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.71
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.68
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.68
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.65
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.63
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.62
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.62
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.61
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.61
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.61
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.6
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.6
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.59
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.59
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.59
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.58
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.58
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.58
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.58
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.58
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.58
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.58
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.57
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.57
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.56
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.56
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.56
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.56
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.56
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.56
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.56
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.55
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.55
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.55
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.55
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.55
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.55
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.55
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.55
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.55
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.55
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.55
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.55
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.55
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.55
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.55
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.55
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.55
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.55
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.55
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.54
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.54
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.54
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.54
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.54
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.54
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.54
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.54
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.54
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.54
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.54
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.54
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.54
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.54
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.53
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.53
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.53
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.53
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.53
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.53
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.53
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.53
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.53
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.53
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.53
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.52
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.52
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.52
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.52
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.52
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.52
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.52
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.52
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.52
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.52
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.52
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.52
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.52
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.52
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.52
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.51
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.51
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.51
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.51
3u23_A	65	CD2-associated protein; structural genomics, struc	99.51
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.51
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.51
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.51
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.51
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.51
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.51
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.51
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.51
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.51
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.51
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.51
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.51
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.51
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.51
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.5
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.5
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.5
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.5
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.5
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.5
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.5
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.5
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.5
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.5
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.5
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.5
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.5
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.5
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.5
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.5
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.5
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.5
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.49
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.49
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.49
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.49
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.49
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.49
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.49
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.49
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.49
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.49
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.49
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.49
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.49
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.49
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.49
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.49
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.49
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.49
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.49
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.48
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.48
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.48
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.48
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.48
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.48
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.48
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.48
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.48
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.48
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.48
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.48
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.48
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.48
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.47
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.47
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.47
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.47
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.47
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.47
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.47
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.47
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.47
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.47
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.47
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.47
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.46
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.46
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.46
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.46
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.46
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.46
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.46
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.46
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.46
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.46
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.46
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.46
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.46
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.45
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.45
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.45
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.45
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.45
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.44
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.44
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.44
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.44
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.44
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.44
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.44
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.44
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.44
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.44
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.44
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.43
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.43
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.43
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.43
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.43
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.43
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.43
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.43
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.43
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.43
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.42
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.42
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.42
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.42
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.42
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.41
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.41
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.41
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.41
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.41
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.41
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.4
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.4
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.4
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.4
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.4
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.4
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.4
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.4
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.4
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.39
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.39
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.39
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.39
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.39
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.39
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.39
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.39
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.39
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.39
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.39
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.38
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.38
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.38
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.38
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.38
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.38
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.38
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.38
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.38
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.38
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.38
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.38
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.38
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.37
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.37
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.37
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.37
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.37
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.37
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.37
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.37
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.37
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.37
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.37
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.37
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.36
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.36
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.36
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.36
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.36
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.36
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.36
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.36
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.36
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.36
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.35
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.35
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.35
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.35
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.35
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.35
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.35
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.35
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.35
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.35
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.35
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.35
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.35
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.34
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.34
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.34
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.34
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.34
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.34
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.34
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.34
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.34
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.34
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.34
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.34
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.34
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.34
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.33
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.33
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.33
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.33
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.33
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.33
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.33
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.33
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.33
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.33
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.33
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.33
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.32
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.32
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.32
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.32
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.32
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.32
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.31
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.31
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.31
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.31
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.31
3u23_A	65	CD2-associated protein; structural genomics, struc	99.31
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.31
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.31
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.31
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.31
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.3
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.3
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.3
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.3
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.3
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.3
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.3
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.3
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.3
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.29
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.29
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.29
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.29
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.29
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.29
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.29
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.29
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.29
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.28
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.28
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.28
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.28
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.28
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.28
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.28
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.28
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.27
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.27
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.27
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.27
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.27
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.26
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.26
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.26
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.26
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.26
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.26
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.26
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.26
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.26
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.25
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.25
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.25
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.25
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.25
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.24
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.24
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.24
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.24
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.24
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.24
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.23
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.23
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.23
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.23
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.22
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.21
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.21
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.21
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.21
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.21
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.21
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.2
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.2
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.2
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.2
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.19
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.19
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.18
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.18
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.18
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.18
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.17
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.16
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.15
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.15
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.14
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.14
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.13
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.13
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.13
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.1
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.07
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	99.04
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.03
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.02
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.01
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.01
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.0
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.99
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.99
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.98
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.95
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.93
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.46
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.92
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.88
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.84
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.84
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.84
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.82
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.82
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.77
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.77
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.76
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.74
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.73
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.69
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.67
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.66
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.62
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.59
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.58
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.58
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.57
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.56
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.5
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.33
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.32
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.31
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.31
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.3
3nw0_A	238	Non-structural maintenance of chromosomes element	98.06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.06
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.98
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	97.92
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.92
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.88
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.85
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.83
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.82
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.75
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.73
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.7
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	97.63
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.62
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.52
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.44
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.39
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	97.14
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.08
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	96.82
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	96.69
2kt8_A	76	Probable surface protein; SH3 family, structural g	96.67
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	96.58
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	96.39
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.2
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.08
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	94.86
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.26
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	93.8

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.93  E-value=3.2e-25  Score=149.44  Aligned_cols=111  Identities=27%  Similarity=0.532  Sum_probs=101.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc----------------ceecc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK----------------FRCIV  119 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~----------------~~~~~  119 (173)
                      ...++++++|.+...++|+|.+||+|.|+.+.+++||.++.  .|+.||||.+|++.+.                +++++
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~~~~~~~p~~~~~~~~al~   88 (193)
T 1ng2_A           11 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIK   88 (193)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCCSSCSSCSCCCCCCTTCEEEEESS
T ss_pred             CcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEE--CCeeeEechheEEeeccccccchhhccccceeeeecc
Confidence            45678999999999999999999999999998899999994  5899999999998642                47889


Q ss_pred             cCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       120 ~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +|.+...++|+|.+||+|.|+...++|||.++..  |+.||||.+||+.++
T Consensus        89 dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~  137 (193)
T 1ng2_A           89 AYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--DVTGYFPSMYLQKSG  137 (193)
T ss_dssp             CBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET--TEEEEEEGGGEEETT
T ss_pred             ccCCCCCCcccccCCCEEEEEEecCCCeEEEEEC--CCEEEEehHHeEECC
Confidence            9999999999999999999999988999999976  999999999998864

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.89  E-value=3.9e-23  Score=148.33  Aligned_cols=110  Identities=22%  Similarity=0.490  Sum_probs=98.0

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC------------------------
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA------------------------  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~------------------------  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|++..                        
T Consensus       136 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~~  214 (304)
T 2eyz_A          136 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLG  214 (304)
T ss_dssp             EEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEEC-TTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSCS
T ss_pred             eEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEe-CCCceeccchhccccccCCCcccccccCCCcCCCCCCCCC
Confidence            578999999999999999999999999998899999993 5689999999998642                        


Q ss_pred             ------------------------cceecccCC--CCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         114 ------------------------KFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       114 ------------------------~~~~~~~~~--~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                                              .++++++|.  +...++|+|++||+|.|+++.++|||.|+..  |+.||||.+||+
T Consensus       215 ~~~p~~~~~p~~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~--g~~G~fP~~yv~  292 (304)
T 2eyz_A          215 GPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR  292 (304)
T ss_dssp             CCCSBTTBCSSSSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEET--TEEEECCCTTSC
T ss_pred             CCCcccccccccccccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEEC--CceEEechHHEE
Confidence                                    145678888  5688899999999999999989999999987  999999999999


Q ss_pred             Eec
Q psy9669         168 QSD  170 (173)
Q Consensus       168 ~~~  170 (173)
                      .++
T Consensus       293 ~~~  295 (304)
T 2eyz_A          293 LLD  295 (304)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            865

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.88  E-value=9.8e-24  Score=151.78  Aligned_cols=114  Identities=20%  Similarity=0.522  Sum_probs=51.1

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc---C-------------------
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA---P-------------------  112 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~---~-------------------  112 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|++   .                   
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~  224 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSG  224 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEC-TTSCEEEEEGGGEEEC---------------------
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEe-CCCCeeEecccccccccccccCccccccccCCCCCcc
Confidence            445689999999999999999999999999998999999995 46899999999998   1                   


Q ss_pred             -----------------------CcceecccCCCC--CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         113 -----------------------AKFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       113 -----------------------~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                                             ..++++++|.+.  .++||+|++||+|.|++...+|||.++..  |+.|+||.+||+
T Consensus       225 s~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~--g~~G~fP~~yv~  302 (308)
T 3qwy_A          225 GGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR  302 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEEC--CeeEEechHHeE
Confidence                                   123567888544  44899999999999999988999999987  999999999999


Q ss_pred             Eecc
Q psy9669         168 QSDF  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      .++.
T Consensus       303 ~~~~  306 (308)
T 3qwy_A          303 FTAV  306 (308)
T ss_dssp             ----
T ss_pred             EecC
Confidence            8764

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.88  E-value=2.9e-22  Score=137.62  Aligned_cols=110  Identities=32%  Similarity=0.685  Sum_probs=92.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC-----------------------
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA-----------------------  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~-----------------------  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+. +++||.++.  .|+.|+||.+|++..                       
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~   79 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRH   79 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES--SSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSS
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeecc--CCccceECCcccccccchhhcccCCHHHHHHHHhccCC
Confidence            367899999999999999999999998876 678999994  689999999987421                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy9669         114 --------------------------------------------------------------------------------  113 (173)
Q Consensus       114 --------------------------------------------------------------------------------  113 (173)
                                                                                                      
T Consensus        80 ~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~  159 (217)
T 1gri_A           80 DGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPT  159 (217)
T ss_dssp             TTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCC
T ss_pred             CceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCce
Confidence                                                                                            


Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|.+||+|.++...+++||.++..  |+.|+||.+||+.++.
T Consensus       160 ~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          160 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECS--SCEEEEEGGGEEEECC
T ss_pred             EEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEEC--CeEEEEeHHHeEECCC
Confidence            1345688999999999999999999999988999999986  9999999999998763

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.77  E-value=1.8e-23  Score=149.92  Aligned_cols=112  Identities=25%  Similarity=0.547  Sum_probs=97.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc---------------------
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK---------------------  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~---------------------  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.||||++|++.+.                     
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~  203 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEP  203 (303)
Confidence            34578999999999999999999999999998899999994 36899999999987531                     


Q ss_pred             ------------------------------------ceecccCCCCC--CcceeecCCCEEEEEEcCCCCeeEEEeCCCC
Q psy9669         115 ------------------------------------FRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTG  156 (173)
Q Consensus       115 ------------------------------------~~~~~~~~~~~--~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g  156 (173)
                                                          ++++++|.++.  .++|+|++||+|.|+++.++|||.|+..  |
T Consensus       204 s~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g  281 (303)
T 2lqn_A          204 AHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--G  281 (303)
Confidence                                                45677887555  6699999999999999989999999986  9


Q ss_pred             cEEEecCCCeEEec
Q psy9669         157 RTGLFPASFMKQSD  170 (173)
Q Consensus       157 ~~G~~P~~~v~~~~  170 (173)
                      +.||||.+||+.++
T Consensus       282 ~~G~fP~~yv~~~~  295 (303)
T 2lqn_A          282 RKGLFPFTHVKIFD  295 (303)
Confidence            99999999999875

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.72  E-value=4.1e-18  Score=102.47  Aligned_cols=72  Identities=33%  Similarity=0.631  Sum_probs=64.2

Q ss_pred             CCCCccCcCCCccccCCc---------------ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEe
Q psy9669          97 QRTQRSGVFPGNYVAPAK---------------FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF  161 (173)
Q Consensus        97 ~~~~~~G~~p~~~v~~~~---------------~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~  161 (173)
                      ...|+.||||.+|++.+.               ++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+|
T Consensus         4 ~~~g~~G~fP~~~v~~~~~~~~~~~p~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~   81 (98)
T 1udl_A            4 GSSGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLF   81 (98)
T ss_dssp             CCSSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSS--SCBCCE
T ss_pred             CCCCCEeEEEhhhEEEcCCcccccCCCCCCceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEEC--CcEEEE
Confidence            346889999999999653               678999999999999999999999999888899999965  999999


Q ss_pred             cCCCeEEec
Q psy9669         162 PASFMKQSD  170 (173)
Q Consensus       162 P~~~v~~~~  170 (173)
                      |.+||+.++
T Consensus        82 P~~yv~~~~   90 (98)
T 1udl_A           82 PSNYVKMTT   90 (98)
T ss_dssp             ETTSEEECC
T ss_pred             ehHHeEEcC
Confidence            999998764

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.72  E-value=1.8e-19  Score=131.26  Aligned_cols=114  Identities=22%  Similarity=0.378  Sum_probs=88.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCcce-------------------
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR-------------------  116 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~~~-------------------  116 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.|+.  .|+.|+||++|++.....                   
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  251 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTI  251 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEEECCCCTTCCCEEEEEEEECSSC
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEcCCCCccccccccccccccCCCC
Confidence            45689999999999999999999999999999999999995  589999999999854210                   


Q ss_pred             -------------------ecccCCC----CCCcceee--cCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCC-CeEEe
Q psy9669         117 -------------------CIVPYPP----NSEYELEL--RVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPAS-FMKQS  169 (173)
Q Consensus       117 -------------------~~~~~~~----~~~~el~~--~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~-~v~~~  169 (173)
                                         +.+++.+    ....+|++  .+||+|.|++..++|||.|+... .|+.|+||.+ ||+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~  331 (341)
T 2dyb_A          252 STIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQK  331 (341)
T ss_dssp             EEEEEEEECSCTTCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEEC
T ss_pred             ccccccccccccCCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEec
Confidence                               1111222    22334444  89999999999899999998651 4566799998 88776


Q ss_pred             cc
Q psy9669         170 DF  171 (173)
Q Consensus       170 ~~  171 (173)
                      +-
T Consensus       332 ~~  333 (341)
T 2dyb_A          332 DN  333 (341)
T ss_dssp             C-
T ss_pred             CC
Confidence            53

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.71  E-value=3.8e-17  Score=90.22  Aligned_cols=58  Identities=40%  Similarity=0.751  Sum_probs=53.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .+++++++|.++.+++|+|++||+|.|++..+++||.++...+|+.|+||++||+++.
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            3578999999999999999999999999998999999998767999999999999874

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.68  E-value=4.7e-17  Score=88.21  Aligned_cols=56  Identities=30%  Similarity=0.663  Sum_probs=50.1

Q ss_pred             CcceecccCCCCCCcc-eeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         113 AKFRCIVPYPPNSEYE-LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~e-l~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .+++++++|.++.+++ |+|++||+|.|+++.+++||.++.. +|+.|+||++||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~-~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKE-DGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECT-TSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeC-CCCEEEEcHHHEEEC
Confidence            3578999999998876 9999999999999988999999975 689999999999864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-17  Score=93.37  Aligned_cols=53  Identities=28%  Similarity=0.731  Sum_probs=46.4

Q ss_pred             hhhcccCCccccccccccCCCeeec-CCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~~-Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .+++.+++.|+||++.+ ..++.++ |||+||..||.+|+.......||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A            9 DDPIPDELLCLICKDIM-TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             CCCSCGGGSCSSSCCCC-TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             cccCCCCCCCcCCChHH-hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            46678999999999999 7888899 99999999999999865556899999754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.65  E-value=5.2e-17  Score=96.68  Aligned_cols=53  Identities=28%  Similarity=0.731  Sum_probs=46.7

Q ss_pred             hhhcccCCccccccccccCCCeeec-CCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~~-Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      .+++.+++.|+||++.+ ..|++++ |||+||..||..|+...+...||+||..+
T Consensus         7 ~~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIM-TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEEC-SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhh-cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            35678999999999999 7899999 99999999999999765557899999765

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.63  E-value=4.4e-16  Score=85.95  Aligned_cols=59  Identities=58%  Similarity=1.068  Sum_probs=54.1

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..++|+++|.++..++|+|.+||++.|+++.+++||.|+....|+.|+||++|++++
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            35578999999999999999999999999999999999999777799999999999875

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.62  E-value=1.5e-15  Score=82.46  Aligned_cols=56  Identities=27%  Similarity=0.522  Sum_probs=51.7

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++..++|+|++||+|.++.+.+++||.++...+|+.|+||++||+.++
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   58 (58)
T 1jo8_A            3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEECC
Confidence            57899999999999999999999999998899999999767999999999998764

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.2e-16  Score=88.41  Aligned_cols=53  Identities=32%  Similarity=0.708  Sum_probs=44.9

Q ss_pred             hhhcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+++++++.|+||++.+ ..++.+ +|||.||..||.+|+...  ..||+||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~   62 (72)
T 2djb_A            9 LSELTPYILCSICKGYL-IDATTITECLHTFCKSCIVRHFYYS--NRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCCCGGGSCTTTSSCC-SSCEECSSSCCEECHHHHHHHHHHC--SSCTTTCCCCCS
T ss_pred             HhhcCCCCCCCCCChHH-HCcCEECCCCCHHHHHHHHHHHHcC--CcCCCcCcccCc
Confidence            35678899999999999 667765 999999999999999753  579999987753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.4e-16  Score=87.30  Aligned_cols=52  Identities=31%  Similarity=0.683  Sum_probs=44.4

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..++.++|||.||..||.+|+.. ....||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVL-CSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIV   61 (66)
T ss_dssp             CSCCCCEECTTTCCEE-SSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCC
T ss_pred             hcCCcCCCCCCCChHh-cCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCC
Confidence            4577899999999999 77888999999999999999963 3357999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.61  E-value=3.3e-16  Score=90.53  Aligned_cols=54  Identities=24%  Similarity=0.602  Sum_probs=46.3

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcc-----cccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-----KELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~-----~~~~CP~Cr~~i~~   58 (173)
                      +++++++.|+||++.+ ..++.++|||+||..||.+|+...     ....||+||..+..
T Consensus         7 ~~~~~~~~C~IC~~~~-~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEEC-SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCccc-CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            5678999999999999 778889999999999999998852     25689999987753

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.2e-15  Score=85.49  Aligned_cols=68  Identities=38%  Similarity=0.753  Sum_probs=59.5

Q ss_pred             CCccCcCCCccccCCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669          99 TQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus        99 ~~~~G~~p~~~v~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++.++.|.+++.  .++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++
T Consensus         6 ~~~~~~~p~~~~~--~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   73 (78)
T 2ed0_A            6 SGDPPWAPRSYLE--KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVESIS   73 (78)
T ss_dssp             CCCCTTSCSSCSE--EEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEET--TEEEEEETTSEEECS
T ss_pred             CCCCCCCCCCcCE--EEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEEC--CcEEEeChHHEEEcC
Confidence            3556788877653  5789999999999999999999999999988999999975  999999999999864

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=81.46  Aligned_cols=55  Identities=33%  Similarity=0.732  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++.+++|+|++||++.++...+++||.++..  |+.|+||++||+.++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEEC--CeEEEEehHHeEEcC
Confidence            4688999999999999999999999999988999999986  999999999999864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.60  E-value=3.9e-16  Score=90.00  Aligned_cols=52  Identities=10%  Similarity=0.365  Sum_probs=45.7

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++.+++.|+||++.+ ..|+.++|||+||..||.+|+..+ ...||+||..+.
T Consensus         3 ~~~~~~~~C~IC~~~~-~~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~~~~   54 (78)
T 1t1h_A            3 PEFPEYFRCPISLELM-KDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQETLL   54 (78)
T ss_dssp             CCCSSSSSCTTTSCCC-SSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCCBCS
T ss_pred             cCCcccCCCCCccccc-cCCEEcCCCCeecHHHHHHHHHHC-cCCCCCCcCCCC
Confidence            4578899999999999 789999999999999999999752 468999998764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.9e-16  Score=85.24  Aligned_cols=48  Identities=33%  Similarity=0.826  Sum_probs=41.7

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc-ccccCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPEC   52 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~-~~~~~CP~C   52 (173)
                      +.+++++.|+||++.+ ..++.++|||+||..||.+|+.. .....||+|
T Consensus        15 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBC-SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchh-CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4578899999999999 78899999999999999999984 234689998

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.7e-16  Score=88.51  Aligned_cols=53  Identities=34%  Similarity=0.758  Sum_probs=45.3

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc-ccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~-~~~~~CP~Cr~~i~   57 (173)
                      +.+++.+.|+||++.+ ..++.++|||.||..||..|+.. .....||+||..+.
T Consensus        15 ~~~~~~~~C~IC~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           15 NKLQEEVICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCCBCTTTCSBC-SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             HhCccCCEeccCCccc-CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            4577899999999999 78888999999999999999973 34468999998764

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.59  E-value=4.2e-15  Score=81.19  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=51.3

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ...++++++|.++.+++|+|++||++.++...+++||.++..  |+.|+||++||+.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~l   59 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKIL   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEEC--CCEEEechHHEEEC
Confidence            345789999999999999999999999999888999999986  99999999999875

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.58  E-value=4e-15  Score=84.49  Aligned_cols=57  Identities=32%  Similarity=0.707  Sum_probs=52.2

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.++..++|+|++||++.++++.+++||.++..  |+.|+||++||+.+..
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           14 PSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEET--TEEEEEEGGGEEEEEC
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEEC--CCEEEeChHHEEECCC
Confidence            34789999999999999999999999999988999999986  9999999999998754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=2.2e-15  Score=88.26  Aligned_cols=53  Identities=26%  Similarity=0.689  Sum_probs=46.0

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcc----cccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH----KELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~----~~~~CP~Cr~~i~   57 (173)
                      +++++.+.|+||++.+ ..++.++|||.||..|+..|+...    ....||+||..+.
T Consensus        14 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           14 EMIKEEVTCPICLELL-KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCCCTTTSCTTTCSCC-SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             HhCccCCCCcCCChhh-CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            5577899999999999 788899999999999999999863    2578999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.58  E-value=3.7e-16  Score=94.21  Aligned_cols=53  Identities=17%  Similarity=0.691  Sum_probs=46.0

Q ss_pred             hhcccCCccccccccccCCCee-ecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~-~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ..+++++.|+||++.+ ..|+. ++|||.||..||.+|+...+ ..||+||..+..
T Consensus        17 ~~l~~~~~C~IC~~~~-~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~   70 (100)
T 3lrq_A           17 ESIAEVFRCFICMEKL-RDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQL   70 (100)
T ss_dssp             HHHHHHTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred             ccCCCCCCCccCCccc-cCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence            5678899999999999 67877 99999999999999998643 579999987743

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.58  E-value=4.8e-15  Score=80.41  Aligned_cols=54  Identities=28%  Similarity=0.597  Sum_probs=50.3

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|++||++.++...+++||.++..  |+.|+||++||++++
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEEC--CeEEEeeHHHeEEcc
Confidence            578999999999999999999999999988999999986  999999999999875

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.58  E-value=5.9e-15  Score=80.07  Aligned_cols=55  Identities=27%  Similarity=0.660  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.+++|+|++||++.++...+++||.++..  |+.|+||++||+.++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   58 (58)
T 1sem_A            4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVCPYN   58 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEEC--CcEEEechHHeEECC
Confidence            4688999999999999999999999999988999999996  999999999998764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=90.13  Aligned_cols=54  Identities=37%  Similarity=0.933  Sum_probs=46.0

Q ss_pred             hhhcccCCccccccccccCC----CeeecCCCCCChhhHHHHHhcc-cccCCCCCCCCCc
Q psy9669           3 EWTLNDLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVP   57 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~----~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~~i~   57 (173)
                      .+.+++.+.|+||++.+ ..    ++.++|||.||..|+.+|+... ....||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~-~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A            9 LDALREVLECPICMESF-TEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCCCSCCBCTTTCCBC-CTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hhhccCCCCCccCCccc-cccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            46678999999999999 55    8899999999999999999854 3468999997664

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.58  E-value=6.1e-15  Score=81.85  Aligned_cols=57  Identities=30%  Similarity=0.564  Sum_probs=51.8

Q ss_pred             cceecccCCC-CCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~-~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+ +..++|+|++||++.++...+++||.++...+|+.|+||++||++++
T Consensus         7 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            7 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             EEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            4789999999 99999999999999999988899999996557999999999999865

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.57  E-value=6.3e-15  Score=81.04  Aligned_cols=57  Identities=37%  Similarity=0.631  Sum_probs=51.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.+++|+|++||+|.++...+++||.++...+|+.|+||++||+++.
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            368899999999999999999999999988899999996447999999999999864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2e-15  Score=81.98  Aligned_cols=48  Identities=33%  Similarity=0.839  Sum_probs=41.2

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc-ccccCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPEC   52 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~-~~~~~CP~C   52 (173)
                      +.+++.+.|+||++.+ ..++.++|||+||..||.+|+.. .....||+|
T Consensus        10 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYL-KEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBC-SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCccc-CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            5677899999999999 77888999999999999999764 344689987

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.9e-15  Score=87.20  Aligned_cols=53  Identities=30%  Similarity=0.709  Sum_probs=45.7

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc----ccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS----HKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~----~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..++.++|||.||..|+..|+..    .....||+||..+.
T Consensus        14 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           14 VNVKEEVTCPICLELL-TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCCCTTTCSCC-SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             HHccCCCCCCCCCccc-CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            4577899999999999 78888999999999999999875    23578999998775

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.56  E-value=7.3e-16  Score=96.64  Aligned_cols=52  Identities=23%  Similarity=0.628  Sum_probs=44.9

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..|+.++|||+||..||..|+.. +...||+||..+.
T Consensus        47 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~   98 (124)
T 3fl2_A           47 SKVEETFQCICCQELV-FRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLG   98 (124)
T ss_dssp             HHHHHHTBCTTTSSBC-SSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred             HhCccCCCCCcCChHH-cCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCC
Confidence            4567889999999999 78999999999999999999984 3358999998774

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.56  E-value=8.4e-15  Score=80.51  Aligned_cols=55  Identities=36%  Similarity=0.767  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++..++|+|++||++.++.. .+++||.++..  |+.|+||.+||+.++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   58 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVKEIK   58 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEEC--CcEEEechHHEEECC
Confidence            46889999999999999999999999998 78899999976  999999999999875

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.56  E-value=1e-14  Score=81.44  Aligned_cols=55  Identities=16%  Similarity=0.396  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+...++|+|++|++|.++...+++||.++.. +|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESS
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEEC-CCCEEEEEhHhEEEc
Confidence            3688999999999999999999999999988999999964 599999999999987

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=9.5e-15  Score=82.81  Aligned_cols=57  Identities=25%  Similarity=0.584  Sum_probs=52.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.|+.+.++|||.++...+|+.|+||.+||+.++
T Consensus         7 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~   63 (73)
T 2lcs_A            7 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   63 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECC
T ss_pred             EEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            468899999999999999999999999998899999998756899999999999865

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.56  E-value=7.5e-15  Score=81.32  Aligned_cols=54  Identities=35%  Similarity=0.736  Sum_probs=50.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+.+.
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~fP~~yv~~~~   57 (65)
T 2nwm_A            4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVEVLP   57 (65)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEET--TEEEEECGGGEEECC
T ss_pred             EEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEEC--CcEEEEehhhEEEcC
Confidence            578999999999999999999999999988999999976  999999999998864

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.56  E-value=8.7e-15  Score=79.40  Aligned_cols=55  Identities=31%  Similarity=0.722  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.+++|+|++||++.++.+.+++||.++..  |+.|+||++||++++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   58 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTAVN   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEEC--CcEEEEchHHeEECC
Confidence            3578999999999999999999999999988999999995  999999999998864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.55  E-value=9.5e-15  Score=81.65  Aligned_cols=56  Identities=27%  Similarity=0.653  Sum_probs=51.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+....
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVEVIVP   60 (68)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEET--TEEEEEEGGGEEESCC
T ss_pred             EEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEEC--CcEEEeeHHHEEEcCc
Confidence            4688999999999999999999999999988999999986  9999999999998754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.6e-15  Score=88.01  Aligned_cols=51  Identities=24%  Similarity=0.488  Sum_probs=44.4

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++.++.+.|+||++.+ ..+++++|||.||..||.+|+...  ..||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~   60 (81)
T 2csy_A           10 EEEEIPFRCFICRQAF-QNPVVTKCRHYFCESCALEHFRAT--PRCYICDQPTG   60 (81)
T ss_dssp             SCCCCCSBCSSSCSBC-CSEEECTTSCEEEHHHHHHHHHHC--SBCSSSCCBCC
T ss_pred             ccCCCCCCCcCCCchh-cCeeEccCCCHhHHHHHHHHHHCC--CcCCCcCcccc
Confidence            4567889999999999 788899999999999999999753  57999998764

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.55  E-value=9.9e-15  Score=79.42  Aligned_cols=54  Identities=33%  Similarity=0.724  Sum_probs=49.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||++.++.+.+++||.++..  |+.|+||.+||+++
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVREI   59 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEeHHHEEEC
Confidence            3688999999999999999999999999888999999985  99999999999864

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=1.3e-14  Score=82.03  Aligned_cols=58  Identities=22%  Similarity=0.520  Sum_probs=49.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEE-cCCCCeeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      .++++++|.+...++|+|++||+|.++. ..+++||.++.. +|+.|+||.+||++.+.+
T Consensus        13 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~l   71 (71)
T 1csk_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREGV   71 (71)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECT-TSCEEEEETTSEEC----
T ss_pred             EEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeC-CCCEEEEehHHeEEccCC
Confidence            4789999999999999999999999998 678899999954 699999999999987653

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.55  E-value=1e-14  Score=79.11  Aligned_cols=53  Identities=34%  Similarity=0.761  Sum_probs=49.2

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|++||++.++++.+++||.++..  |+.|+||++||+++
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVKPA   57 (58)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEEC--CcEEEeeHHHEEEc
Confidence            578999999999999999999999999888999999985  99999999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.55  E-value=1.2e-14  Score=82.61  Aligned_cols=57  Identities=21%  Similarity=0.501  Sum_probs=52.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|.+||+|.++...+++||.++...+|+.|+||.+||++++
T Consensus        17 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            468999999999999999999999999998899999998546999999999999874

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.55  E-value=5.4e-15  Score=81.87  Aligned_cols=55  Identities=40%  Similarity=0.906  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+||++||+...
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~   57 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVKELE   57 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESS--SCEEEEETTTSCBCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEEC--CcEEEecHHHEEEcC
Confidence            3678999999999999999999999999888999999975  999999999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.55  E-value=9.7e-16  Score=97.75  Aligned_cols=51  Identities=27%  Similarity=0.785  Sum_probs=44.1

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+++++.|+||++.+ ..|++++|||.||..||..|+...  ..||+||..+..
T Consensus        49 ~~~~~~~C~iC~~~~-~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   99 (138)
T 4ayc_A           49 VLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMKRK--IECPICRKDIKS   99 (138)
T ss_dssp             HHHHHSBCTTTCSBC-SSEEEETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred             hccccCCCcccCccc-CCceECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence            356778999999999 789999999999999999999754  479999987753

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=80.60  Aligned_cols=56  Identities=30%  Similarity=0.730  Sum_probs=51.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A            9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQRLSG   64 (68)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECS--SCEEEEETTTEEECCC
T ss_pred             EEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC--CcEEEEehHHeEECCC
Confidence            4689999999999999999999999999988999999965  9999999999998753

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.55  E-value=1.2e-14  Score=83.62  Aligned_cols=58  Identities=21%  Similarity=0.497  Sum_probs=51.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||++.++...+++||.++...+|+.|+||.+||+.++.
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   64 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR   64 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC--
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCc
Confidence            3688999999999999999999999999888999999994469999999999998764

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.55  E-value=1.2e-14  Score=80.50  Aligned_cols=57  Identities=40%  Similarity=0.770  Sum_probs=51.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||++.++...+++||.++...+|+.|+||.+||++++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~   64 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN   64 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC-
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEECc
Confidence            468899999999999999999999999988899999999556999999999999864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.55  E-value=1.4e-14  Score=79.14  Aligned_cols=54  Identities=28%  Similarity=0.705  Sum_probs=50.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||++.++++.+++||.++..  |+.|+||++||+.+
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVTKI   60 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CEEEEEcHHHEEEC
Confidence            4689999999999999999999999999988999999986  99999999999864

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.55  E-value=1e-14  Score=78.82  Aligned_cols=54  Identities=20%  Similarity=0.625  Sum_probs=48.7

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.+..+++|+|++||++.++.+.+++||.++.. +|+.|+||++||+++
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC-
T ss_pred             EEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeC-CCCEEEEeHHHEEEC
Confidence            578899999999999999999999999988999999955 599999999999863

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=2.6e-14  Score=82.41  Aligned_cols=57  Identities=12%  Similarity=0.468  Sum_probs=51.1

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCC----CCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.+...++|+|++||+|.|+.+.+    ++||.++..  |+.|+||.+||++++.
T Consensus        14 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--GKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESS--SCEEEEEGGGEEECCS
T ss_pred             eEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeC--CCEEEEchHHeEECCC
Confidence            35789999999999999999999999999876    899999865  9999999999998753

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.55  E-value=1.1e-14  Score=81.50  Aligned_cols=57  Identities=30%  Similarity=0.535  Sum_probs=51.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCC---cEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g---~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++...++   +.|+||.+||+.++
T Consensus         9 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~~   68 (68)
T 1tg0_A            9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG   68 (68)
T ss_dssp             EEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEECC
T ss_pred             EEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEECC
Confidence            5789999999999999999999999999888999999987445   99999999998753

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.55  E-value=1.3e-14  Score=79.78  Aligned_cols=55  Identities=27%  Similarity=0.600  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++|+++.+++..+++||.++..  |+.|+||++||++++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~--g~~G~~P~~yv~~~d   62 (62)
T 3ngp_A            8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN--GRQGFVPAAYLKKLD   62 (62)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEEC--CEEEEEEHHHEEECC
Confidence            4688999999999999999999999999988999999976  999999999999875

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.4e-15  Score=86.05  Aligned_cols=52  Identities=31%  Similarity=0.673  Sum_probs=44.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      +...+.+.|+||++.+ ..++.++|||.||..||.+|+...  ..||+||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~   61 (71)
T 2d8t_A           10 APSLTVPECAICLQTC-VHPVSLPCKHVFCYLCVKGASWLG--KRCALCRQEIPE   61 (71)
T ss_dssp             CSSSSCCBCSSSSSBC-SSEEEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred             ccCCCCCCCccCCccc-CCCEEccCCCHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence            3456788999999999 788999999999999999999854  579999987754

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.55  E-value=4.6e-15  Score=83.19  Aligned_cols=52  Identities=29%  Similarity=0.708  Sum_probs=43.0

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      ++...|+||++.+..+++.++|||.||..|+.+|+..+  ..||+||..+....
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~   54 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCCCEE
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc--CcCcCCChhhHhhh
Confidence            45679999999994445889999999999999999754  57999998876543

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.55  E-value=1.3e-14  Score=78.64  Aligned_cols=54  Identities=31%  Similarity=0.670  Sum_probs=49.7

Q ss_pred             ceecccC-CCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~-~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++| .+...++|+|++||+|.++...+++||.++...+|+.|+||.+||++
T Consensus         3 ~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            5788999 79899999999999999999988999999998679999999999975

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.54  E-value=1.5e-14  Score=80.37  Aligned_cols=55  Identities=29%  Similarity=0.622  Sum_probs=50.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||++.+++..+++||.++..  |+.|+||++||+.++
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B           11 TAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVELRQ   65 (65)
T ss_dssp             CEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEEC--CcEEEEehHHeEECC
Confidence            4789999999999999999999999999988999999975  999999999998764

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.54  E-value=1.5e-14  Score=81.06  Aligned_cols=54  Identities=37%  Similarity=0.824  Sum_probs=49.8

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|++||+|.|+.+.  +++||.++..  |+.|+||.+||+.++
T Consensus         5 ~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~--g~~G~~P~~yV~~~~   60 (69)
T 2ydl_A            5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVKLLP   60 (69)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEEC--CcEEEecHHHEEECC
Confidence            67899999999999999999999999985  7899999986  999999999999865

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.8e-14  Score=80.66  Aligned_cols=56  Identities=25%  Similarity=0.601  Sum_probs=51.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            9 AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFN--GQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             EEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEET--TEEEEECSTTEEECCC
T ss_pred             EEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeC--CCEEEeehHHeEECCC
Confidence            4689999999999999999999999999888999999876  9999999999998753

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.54  E-value=1.4e-14  Score=80.83  Aligned_cols=57  Identities=23%  Similarity=0.583  Sum_probs=52.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||++.++++.+++||.++...+|+.|+||++||+.+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            478999999999999999999999999988899999999845699999999999875

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.3e-14  Score=83.10  Aligned_cols=55  Identities=20%  Similarity=0.407  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+...++|+|++||+|.|+...+++||.++.. +|+.|+||.+||++.
T Consensus        21 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           21 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVEK   75 (85)
T ss_dssp             EEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECS-SSCEEEEETTTCEEC
T ss_pred             EEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCEEEEehHHeEEc
Confidence            3789999999999999999999999999988899999864 699999999999985

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.54  E-value=1.6e-14  Score=81.52  Aligned_cols=57  Identities=37%  Similarity=0.631  Sum_probs=51.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++...+|+.|+||++||++++
T Consensus         8 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~   64 (71)
T 2fpf_A            8 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   64 (71)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             EEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECC
Confidence            468899999999999999999999999988899999996447999999999998875

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.54  E-value=3e-15  Score=81.11  Aligned_cols=55  Identities=24%  Similarity=0.597  Sum_probs=49.2

Q ss_pred             ceeeccCCCCCCCccc-cceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDE-LELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~e-l~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++|+++|.++..++ |+|.+||++.|+++.+++||.++. ..|+.|+||++||+.
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~-~~G~~G~fP~nyVe~   59 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEK-EDGLRGWFPASYVQL   59 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEEC-TTSCEEEECGGGEEE
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEe-CCCCEEEEcHHHEEE
Confidence            4578999999998887 999999999999998999999994 468999999999874

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.54  E-value=1.1e-14  Score=81.31  Aligned_cols=55  Identities=33%  Similarity=0.547  Sum_probs=50.2

Q ss_pred             cceecccCCCC--CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++  ..++|+|++||+|.++...+++||.++..  |+.|+||++||+.++
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~fP~~yv~~~~   59 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVKIFD   59 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeC--CcEEEEehHHeEECC
Confidence            36789999998  88999999999999999988999999876  999999999999864

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.54  E-value=1.6e-14  Score=80.00  Aligned_cols=55  Identities=20%  Similarity=0.601  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++.. +|+.|+||++||+.+
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   59 (65)
T 1b07_A            5 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY   59 (65)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             EEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEEC-CCCEEEEChHHEeec
Confidence            3688999999999999999999999999988999999954 599999999999875

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.1e-14  Score=79.24  Aligned_cols=55  Identities=25%  Similarity=0.583  Sum_probs=50.5

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|++||++.++.+.+++||.++...+|+.|+||++||+.+
T Consensus         4 ~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            6789999999999999999999999998889999999875589999999999875

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.54  E-value=1.7e-14  Score=78.23  Aligned_cols=55  Identities=27%  Similarity=0.562  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++..++|+|++|+++.++++.+++||.+...  |+.|+||++||+++.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--GQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEEC--CcEEEEehHHEEECC
Confidence            4678999999999999999999999999988999999765  999999999999764

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.54  E-value=2.1e-14  Score=81.41  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=50.6

Q ss_pred             cceecccCCCC--CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+.  ..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++.
T Consensus        11 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~~   68 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKFIYVDVLSS   68 (73)
T ss_dssp             EEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECS--SCEEEECSTTEEECCC
T ss_pred             EEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEEC--CCEEEEeHHHEEECCC
Confidence            47899999975  88999999999999999988999999886  9999999999998753

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.54  E-value=1.9e-14  Score=78.08  Aligned_cols=54  Identities=31%  Similarity=0.733  Sum_probs=49.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||++.++.+.+++||.++..  |+.|+||.+||+.+
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~l   58 (58)
T 2drm_A            5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN--GKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEeHHHEEEC
Confidence            3688999999999999999999999999988999999985  99999999999864

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.54  E-value=2.2e-14  Score=80.56  Aligned_cols=58  Identities=26%  Similarity=0.594  Sum_probs=52.3

Q ss_pred             cceecccCC-CCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~-~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|. +...++|+|++||++.++...+++||.++...+|+.|+||++||++++.
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            368899995 9999999999999999999988999999998669999999999998754

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.53  E-value=9e-15  Score=82.18  Aligned_cols=57  Identities=28%  Similarity=0.610  Sum_probs=51.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+...++|+|++||++.++.+.+++||.++.. +|+.|+||++||++++.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG-KGQEGYFPANHVASETL   64 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEE-TTEEEEEEGGGEEEHHH
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeC-CCCEEEEchHHeEECcc
Confidence            4688999999999999999999999999888999999984 59999999999998754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.53  E-value=2e-14  Score=79.57  Aligned_cols=56  Identities=32%  Similarity=0.694  Sum_probs=51.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||++.++...+++||.++..  |+.|+||.+||+.++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVREIK   62 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEEC--CCEEEEehHHeEEcC
Confidence            34789999999999999999999999999888999999985  999999999999875

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.53  E-value=2.5e-14  Score=78.09  Aligned_cols=56  Identities=25%  Similarity=0.562  Sum_probs=49.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+..+++|+|++||++.++.. .+++||.++..++|+.|+||++||+.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            36789999999999999999999999998 488999999944699999999999863

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=80.96  Aligned_cols=57  Identities=39%  Similarity=0.768  Sum_probs=52.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+...+++||.++...+++.|+||.+||++++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct3_A            9 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS   65 (70)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETT
T ss_pred             EEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECC
Confidence            468899999999999999999999999998899999998767999999999999875

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-14  Score=81.15  Aligned_cols=56  Identities=32%  Similarity=0.506  Sum_probs=50.7

Q ss_pred             CcceecccCCCC--CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++  ..++|+|++||+|.|+.+.+++||.++..  |+.|+||++||+.++
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVRLLD   64 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEET--TEEEEEEGGGBCCBC
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEEC--CCEEEEehHhEEEcC
Confidence            357899999998  88899999999999999988999999886  999999999998764

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.53  E-value=2e-14  Score=79.92  Aligned_cols=56  Identities=14%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||++.|+.+ +++||.++.. +|+.|+||++||+.++-
T Consensus         6 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~-~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            6 IVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-ANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             EEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECT-TSCEEECCCCSEEEC--
T ss_pred             EEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeC-CCCEEEeChHHEeEcCC
Confidence            36889999999999999999999999998 4799999965 69999999999998753

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=9.9e-15  Score=80.24  Aligned_cols=55  Identities=29%  Similarity=0.689  Sum_probs=50.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++...+++||.++..  |+.|+||.+||+.+.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECS--SCEEEECGGGCCCSC
T ss_pred             EEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEEC--CcEEEEeHHHEEECC
Confidence            4688999999999999999999999999988999999965  999999999998764

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.53  E-value=2.1e-14  Score=77.86  Aligned_cols=52  Identities=38%  Similarity=0.870  Sum_probs=48.6

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++|.+..+++|+|++||++.++...+++||.++..  |+.|+||++||++
T Consensus         6 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~   57 (58)
T 1zlm_A            6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE   57 (58)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEE
T ss_pred             EEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEEC--CCEEEEehHHEEe
Confidence            578999999999999999999999999988999999985  9999999999986

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.53  E-value=1.3e-14  Score=82.99  Aligned_cols=56  Identities=27%  Similarity=0.666  Sum_probs=44.2

Q ss_pred             hhhcccCCcccccccccc-CCCeeec--CCCCCChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669           3 EWTLNDLLECSVCLDRLD-TSSKVLP--CQHTFCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~-~~~~~~~--Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      .+.++++++||||++.+. .++.+++  |||.||..|+.+++.. ....||.||..+...
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED   63 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence            356789999999999874 2455555  9999999999998764 346899999877643

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=79.37  Aligned_cols=55  Identities=36%  Similarity=0.817  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+.+.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAEQS   63 (68)
T ss_dssp             EEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESS--SCEEEEETTTEEECC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEEC--CcEEEEehHHeEEcC
Confidence            3688999999999999999999999999988999999975  999999999999864

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=5.2e-14  Score=81.50  Aligned_cols=69  Identities=22%  Similarity=0.338  Sum_probs=56.6

Q ss_pred             CccCcCCCccc-cCCcceecccCCCCCCcceeecCCCEEEEEEc--CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         100 QRSGVFPGNYV-APAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       100 ~~~G~~p~~~v-~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +..|+.|..-. ....++++++|.++..++|+|++||+|.|+..  .+++||.++..  |+.|+||.+||+.++
T Consensus         4 ~s~~~~p~~~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   75 (81)
T 1x43_A            4 GSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG--NQKGKVPITYLELLN   75 (81)
T ss_dssp             CCCCCCCCCCCCCCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEET--TEEEEEEGGGEEECC
T ss_pred             CcCCCCCCCCCCCCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEEC--CCEEEEehHHEEECC
Confidence            45566664321 22357899999999999999999999999998  46899999975  999999999999875

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.52  E-value=3.2e-14  Score=79.66  Aligned_cols=56  Identities=27%  Similarity=0.631  Sum_probs=51.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+...++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPASSVEVISG   64 (68)
T ss_dssp             EEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEET--TEEEEEESSSEETTCS
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEEC--CcEEEeehHHEEEcCC
Confidence            4689999999999999999999999999988999999975  9999999999987653

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.52  E-value=4.5e-15  Score=90.77  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=45.4

Q ss_pred             hhhcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .+++.+++.|+||.+.+ ..++.+ +|||+||..||..|+..+  ..||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~   61 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYF-IDATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVH   61 (108)
T ss_dssp             HHHHGGGTBCTTTSSBC-SSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSC
T ss_pred             hhccCCcCCCccCChHH-hCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCcccc
Confidence            36788999999999999 677777 999999999999999864  57999998764

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=80.39  Aligned_cols=56  Identities=29%  Similarity=0.458  Sum_probs=50.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC---CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++...   +++||.++..  |+.|+||.+||+.+..
T Consensus         5 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEET--TEEEEEEGGGEEEEEE
T ss_pred             EEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEEC--CcEEEechhhEEECCC
Confidence            367899999999999999999999999987   7899999975  9999999999998753

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=81.09  Aligned_cols=56  Identities=21%  Similarity=0.483  Sum_probs=51.5

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   65 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHN--GIDGLIPHQYIVVQD   65 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEET--TEEEEECSSSEEECC
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEEC--CEEEEEchHHeEEcC
Confidence            45789999999999999999999999999888899999996  999999999999864

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.52  E-value=3e-14  Score=77.78  Aligned_cols=54  Identities=30%  Similarity=0.684  Sum_probs=49.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||++.++...  +++||.++..  |+.|+||++||+.+
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~l   60 (60)
T 1oot_A            5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVELV   60 (60)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEEC--CEEEEEeHHHEEEC
Confidence            468899999999999999999999999986  6899999986  99999999999864

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.52  E-value=4.3e-14  Score=79.13  Aligned_cols=55  Identities=31%  Similarity=0.713  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~   63 (68)
T 2dl3_A            9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIELLS   63 (68)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECS--SCEEEEETTTEEECC
T ss_pred             EEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEEC--CCEEEEchHHEEECC
Confidence            4789999999999999999999999999888999999965  999999999999864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.52  E-value=5.5e-15  Score=86.27  Aligned_cols=52  Identities=10%  Similarity=-0.007  Sum_probs=45.9

Q ss_pred             hhhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           3 EWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ...+.+.+.||||+++| ..|++++|||+||+.||.+|+...  ..||+|+..+.
T Consensus         8 ~~~~p~~~~CpI~~~~m-~dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~   59 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLM-TDPVRLPSGTVMDRSIILRHLLNS--PTDPFNRQMLT   59 (85)
T ss_dssp             CTTCCTTTBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred             hhcCchheECcccCchh-cCCeECCCCCEECHHHHHHHHhcC--CCCCCCcCCCC
Confidence            35677899999999999 899999999999999999999853  58999997764

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.52  E-value=2.9e-14  Score=83.04  Aligned_cols=58  Identities=19%  Similarity=0.402  Sum_probs=52.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++...+|+.|+||.+||++++.
T Consensus         8 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (84)
T 4ag1_C            8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDS   65 (84)
T ss_dssp             EEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             EEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCC
Confidence            3688999999999999999999999999988999999994469999999999998765

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.2e-14  Score=79.64  Aligned_cols=56  Identities=23%  Similarity=0.504  Sum_probs=51.2

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+.+.
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   63 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERA--GCCGYIPANHVGKHS   63 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECT--TCCEEEESSSEECCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEEC--CeEEEEehHHeEECC
Confidence            34789999999999999999999999999988999999976  999999999998764

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.52  E-value=7.7e-15  Score=84.17  Aligned_cols=56  Identities=32%  Similarity=0.702  Sum_probs=51.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|.+||+|.++...+++||.++..  |+.|+||++||+.++.
T Consensus        20 ~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~--g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILKD   75 (79)
T ss_dssp             CEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEET--TEEEEEEGGGEEESSC
T ss_pred             EEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEEC--CeEEEecHHHEEECCC
Confidence            4789999999999999999999999999888999999986  9999999999998764

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=80.80  Aligned_cols=53  Identities=32%  Similarity=0.698  Sum_probs=49.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.++..++|+|++||+|.|+...+++||.++..  ++.|+||.+||++
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~--g~~G~fP~~yV~~   71 (72)
T 2l0a_A           19 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECS--SCEEECTTCCEEE
T ss_pred             EEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEEC--CCEEEechhhCcc
Confidence            4789999999999999999999999999888999999987  8899999999975

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.52  E-value=4.4e-14  Score=79.79  Aligned_cols=56  Identities=25%  Similarity=0.512  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc--CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++.+  .+++||.++.. +|+.|+||.+||+.++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   65 (71)
T 1u5s_A            8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEECC
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeC-CCCEEEEeHHHEEECC
Confidence            46889999999999999999999999998  67899999854 5999999999999875

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.52  E-value=1.4e-14  Score=78.56  Aligned_cols=56  Identities=29%  Similarity=0.515  Sum_probs=51.1

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+++||.++...+|+.|+||++|++.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            56889999999999999999999999999899999999766799999999998754

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=7.8e-14  Score=82.00  Aligned_cols=57  Identities=33%  Similarity=0.573  Sum_probs=50.8

Q ss_pred             CCcceecccCCCC--CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         112 PAKFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       112 ~~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ...++++|+|.+.  ..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~fP~~yv~~~~   74 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVKIFD   74 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECS--SCEEEECTTTEEECC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeC--CCEEEEehHHeEECC
Confidence            3457899999955  88999999999999999988999999876  999999999999874

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.51  E-value=2.3e-14  Score=79.97  Aligned_cols=55  Identities=25%  Similarity=0.562  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCc-ceeecCCCEEEEEEcCC-----CCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEY-ELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~-----~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++.++ +|+|++||++.|+.+.+     ++||.++.. +|+.|+||++||+.+
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~-~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEET-TTEEEEECGGGEEEC
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeC-CCCEEEecHHHEEEC
Confidence            57889999999999 99999999999999875     499999985 599999999999863

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.51  E-value=1.5e-14  Score=80.29  Aligned_cols=56  Identities=25%  Similarity=0.560  Sum_probs=50.3

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC------CcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~------g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++..++|+|++||++.++...+++||.++...+      |+.|+||++||+.++
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l~   65 (65)
T 2oaw_A            4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD   65 (65)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEECC
T ss_pred             EEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEcC
Confidence            57899999999999999999999999998899999987632      789999999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=81.87  Aligned_cols=55  Identities=16%  Similarity=0.394  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.|+.+.+++||.++..  ++.||||.+||++++
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   64 (80)
T 2ekh_A           10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLVLDE   64 (80)
T ss_dssp             EEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEET--TEEEEEETTTEECCC
T ss_pred             EEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEEC--CCEEEEEhHHeEECC
Confidence            3688999999999999999999999999988999999986  999999999999865

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=81.91  Aligned_cols=57  Identities=30%  Similarity=0.567  Sum_probs=51.7

Q ss_pred             cceecccCCC-CCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~-~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+ +..++|+|++||+|.|+...+++||.++...+|+.|+||.+||++++
T Consensus         9 ~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~   66 (71)
T 2gqi_A            9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS   66 (71)
T ss_dssp             CEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECC
T ss_pred             EEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            4789999999 99999999999999999988899999996557999999999999875

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.51  E-value=2e-14  Score=79.78  Aligned_cols=56  Identities=39%  Similarity=0.891  Sum_probs=51.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+...++|+|.+||+|.++.+.+++||.++..  |+.|+||.+||++++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~   64 (65)
T 3u23_A            9 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVKELEV   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEET--TEEEEEEGGGEEECC-
T ss_pred             EEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CCEEEeehHHEEECcC
Confidence            4788999999999999999999999999888999999975  9999999999998764

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=4e-14  Score=79.95  Aligned_cols=58  Identities=24%  Similarity=0.515  Sum_probs=51.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+...++|+|++||+|.|+... +++||.++...+|+.|+||.+||+.++.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (71)
T 2jt4_A            8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD   66 (71)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCC
Confidence            468899999999999999999999999987 8899999994459999999999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.51  E-value=1e-14  Score=78.28  Aligned_cols=49  Identities=39%  Similarity=0.909  Sum_probs=40.9

Q ss_pred             cccCCccccccccccC--CCeeec-CCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           6 LNDLLECSVCLDRLDT--SSKVLP-CQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~--~~~~~~-Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ++++..|+||++.+..  .+..++ |||.||..||.+|+..+  ..||+||..+
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--CSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC--CcCcCCCCEe
Confidence            5788899999998832  267776 99999999999999764  5799999765

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.51  E-value=3.7e-14  Score=78.45  Aligned_cols=54  Identities=39%  Similarity=0.801  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++..++|+|++||+|.++.+.  +++||.++..  |+.|+||.+||+.+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~l   63 (64)
T 2jte_A            8 YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEEC--CeEEEEeHHHEEEC
Confidence            468899999999999999999999999875  6899999975  99999999999875

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=3.4e-14  Score=80.04  Aligned_cols=57  Identities=23%  Similarity=0.583  Sum_probs=51.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++.+.+++||.++...+++.|+||.+||+.+.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ecz_A            9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS   65 (70)
T ss_dssp             CEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECC
Confidence            478999999999999999999999999988889999999845699999999999864

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.51  E-value=4.7e-14  Score=77.50  Aligned_cols=55  Identities=20%  Similarity=0.517  Sum_probs=49.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+...++|+|++||++.++... ++||.++...+|+.|+||++||+++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            8 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            478999999999999999999999999984 5999999744699999999999864

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.51  E-value=3.5e-14  Score=82.29  Aligned_cols=55  Identities=22%  Similarity=0.527  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|.+||+|.|+...+++||.++..  |+.|+||++||+.++
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   73 (83)
T 1neg_A           19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLA   73 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEEC--CeEEEEEHHHEEECC
Confidence            4789999999999999999999999999988999999765  999999999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.6e-15  Score=84.44  Aligned_cols=51  Identities=24%  Similarity=0.704  Sum_probs=42.9

Q ss_pred             hhcccCCccccccccccCCC-------eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+...|+||++.+ ..+       +.++|||.||..||.+|+...  ..||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   67 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN   67 (69)
T ss_dssp             CCTTCCCCCTTTCCCH-HHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred             cCCCCCCCCcccCccc-cccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence            4567889999999988 333       889999999999999999863  47999998764

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=79.65  Aligned_cols=58  Identities=28%  Similarity=0.506  Sum_probs=51.5

Q ss_pred             CcceecccCCC-CCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPP-NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+ +..++|+|++||+|.|+.+ .+++||.++...+|+.|+||++||+.++
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            35789999995 8999999999999999985 7889999998767999999999998764

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.51  E-value=7.9e-15  Score=90.33  Aligned_cols=53  Identities=26%  Similarity=0.759  Sum_probs=44.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcc-cccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..++.++|||+||..||.+|+... ....||+||..+.
T Consensus        16 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           16 NAMQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHHHHHTSCSSSCCCC-SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HhccCCCCCcccChhh-cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            3456788999999999 788889999999999999999853 3358999998765

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.51  E-value=4.6e-14  Score=77.84  Aligned_cols=56  Identities=13%  Similarity=0.364  Sum_probs=49.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++|+++.++.+ .+++||.++..  |+.|+||.+||+++++
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~~P~~yv~~~~s   63 (63)
T 3eg3_A            7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSAYITPVNS   63 (63)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEET--TEEEEEEGGGEEESCC
T ss_pred             EEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEEC--CCeEEEehHHeEECCC
Confidence            46889999999999999999999999984 45679999986  9999999999998763

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.51  E-value=4e-15  Score=95.93  Aligned_cols=52  Identities=23%  Similarity=0.593  Sum_probs=44.8

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..|+.++|||+||..||.+|+.. ....||+||..+.
T Consensus        73 ~~l~~~~~C~IC~~~~-~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~  124 (150)
T 1z6u_A           73 KKLEQSFMCVCCQELV-YQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLG  124 (150)
T ss_dssp             HHHHHHTBCTTTSSBC-SSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred             HhCccCCEeecCChhh-cCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCC
Confidence            3466789999999999 78889999999999999999985 3357999998764

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.51  E-value=3.3e-14  Score=78.11  Aligned_cols=53  Identities=30%  Similarity=0.672  Sum_probs=49.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.++..++|+|++||++.++...+++||.++..  ++.|+||.+||+.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~   59 (62)
T 1uj0_A            7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC--CCEEEechhHEEE
Confidence            4688999999999999999999999999988999999987  8999999999975

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.51  E-value=3.5e-14  Score=76.97  Aligned_cols=54  Identities=26%  Similarity=0.550  Sum_probs=48.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      +++++++|.++.+++|+|++||++.++...+ ++||.++...+|+.|+||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            3688999999999999999999999999876 79999999445999999999986

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.51  E-value=3.7e-15  Score=84.30  Aligned_cols=51  Identities=24%  Similarity=0.704  Sum_probs=42.6

Q ss_pred             hhcccCCccccccccccCCC-------eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ...++++.|+||++.+ ..+       +.++|||.||..||.+|+...  ..||+||..+.
T Consensus         5 ~~~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   62 (71)
T 3ng2_A            5 LRPSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN   62 (71)
T ss_dssp             -CCTTCCBCTTTCCBH-HHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred             CCCCCCCCCcccChhh-hccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence            3456789999999988 444       889999999999999999864  47999998774

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.50  E-value=4.9e-14  Score=79.96  Aligned_cols=55  Identities=24%  Similarity=0.555  Sum_probs=49.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      +++++++|.+ ..++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECCS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEEC--CCEEEEehHHeEEcCC
Confidence            3678899998 88999999999999999988999999975  9999999999998753

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=3.2e-14  Score=81.40  Aligned_cols=56  Identities=34%  Similarity=0.763  Sum_probs=51.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A           11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEET--TEEEEECTTTSEECC
T ss_pred             EEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEEC--CCEEEechHHEEECC
Confidence            35789999999999999999999999999888999999986  999999999999874

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=3.5e-14  Score=79.24  Aligned_cols=58  Identities=28%  Similarity=0.503  Sum_probs=49.4

Q ss_pred             CcceecccCCCCCCcc-eeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYE-LELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~e-l~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++ |+|++||+|.++.. .+++||.++...+|+.|+||.+||+.++
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l~   67 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLD   67 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEECc
Confidence            3578999999887666 99999999999854 5789999996556999999999998864

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.1e-14  Score=83.56  Aligned_cols=59  Identities=32%  Similarity=0.635  Sum_probs=53.4

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ...++++++|.+...++|+|++||+|.|+...+++||.++...+|+.|+||.+||+.++
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   75 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR   75 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEE
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcC
Confidence            34578999999999999999999999999988899999998757999999999999864

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.50  E-value=2.5e-14  Score=78.05  Aligned_cols=53  Identities=21%  Similarity=0.446  Sum_probs=48.9

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ..++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEET--TEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CeEEEEeHhhEE
Confidence            35789999999999999999999999999888899999996  999999999986

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.50  E-value=3.6e-14  Score=79.47  Aligned_cols=56  Identities=20%  Similarity=0.558  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++...+++||.++.. +|+.|+||.+||+.++
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDA-KGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECS-SSCEEEEESTTEEECC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEehHHeEECc
Confidence            4679999999999999999999999999988899999954 5999999999999875

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=6.2e-14  Score=79.55  Aligned_cols=56  Identities=27%  Similarity=0.608  Sum_probs=50.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc---CCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+   .+++||.++..  |+.|+||.+||+.++.
T Consensus        10 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   68 (73)
T 2dl7_A           10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIGVFPSVLVEELSS   68 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEET--TEEEEECSSSEEECCS
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEEC--CCEEEEChHHEEECCC
Confidence            46899999999999999999999999987   47899999965  9999999999998753

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.8e-14  Score=75.68  Aligned_cols=51  Identities=35%  Similarity=0.707  Sum_probs=46.7

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ++++++|.++.+++|+|++||+|.++.+.+ ++||.++..  |+.|+||.+||+
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~--g~~G~~P~~yv~   54 (54)
T 2a28_A            3 MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK   54 (54)
T ss_dssp             EEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEET--TEEEEEEGGGBC
T ss_pred             EEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEEC--CeEEEeeHHHcC
Confidence            578899999999999999999999999875 799999995  999999999984

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=2e-14  Score=82.71  Aligned_cols=54  Identities=31%  Similarity=0.666  Sum_probs=43.7

Q ss_pred             hhhcccCCccccccccccC--CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           3 EWTLNDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         3 ~~~~~~~~~C~iC~~~~~~--~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+...+...|+||++.+..  ....++|||.||..||.+|+...  ..||+||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   64 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence            3567788999999998842  23567999999999999999754  579999987754

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.8e-14  Score=81.25  Aligned_cols=58  Identities=26%  Similarity=0.516  Sum_probs=52.4

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ...++++++|.+..+++|+|++||+|.|+++ +++||.++...+|+.|+||.+||+.+.
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~   74 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFIS   74 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEE
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECC
Confidence            3457899999999999999999999999999 899999999545999999999999875

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.50  E-value=6.5e-14  Score=79.24  Aligned_cols=56  Identities=14%  Similarity=0.444  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..+++|+|++||+|.++.. +++||.++.. +|+.|+||.+||+.++.
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            9 VVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNS-MNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             EEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECT-TSCEEEECTTSCEECCC
T ss_pred             EEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEEC-CCCEEEEEhhHEEEcCC
Confidence            47889999999999999999999999997 6799999975 59999999999998764

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.50  E-value=4.4e-14  Score=80.20  Aligned_cols=57  Identities=30%  Similarity=0.682  Sum_probs=51.8

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.+...++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++.
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            8 PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVEILVA   64 (73)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEET--TEEEEEESSSEEESSC
T ss_pred             CEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEEC--CCEEEechHHEEEccC
Confidence            34789999999999999999999999999888999999985  9999999999998753

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=5.9e-14  Score=80.53  Aligned_cols=59  Identities=20%  Similarity=0.477  Sum_probs=53.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC-CcE------EEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRT------GLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~-g~~------G~~P~~~v~~~~~~  172 (173)
                      .++++++|.+...++|+|++||+|.|+++.+++||.++...+ |+.      |+||.+||++++.+
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~   74 (77)
T 2d8j_A            9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGP   74 (77)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCC
T ss_pred             EEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCc
Confidence            368999999999999999999999999998899999999854 788      99999999987653

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=8.7e-14  Score=80.15  Aligned_cols=56  Identities=29%  Similarity=0.596  Sum_probs=51.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+...++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++.
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   74 (79)
T 1x69_A           19 TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVELRQS   74 (79)
T ss_dssp             CEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEET--TEEEEEETTSEEECCC
T ss_pred             EEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEEC--CcEEEechHHEEECCC
Confidence            5789999999999999999999999999888999999976  9999999999998754

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.50  E-value=5.7e-15  Score=88.95  Aligned_cols=51  Identities=29%  Similarity=0.875  Sum_probs=43.6

Q ss_pred             hhcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..++.+ +|||+||..||.+|+...  ..||+||..+.
T Consensus        17 ~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~   68 (99)
T 2y43_A           17 KTIDDLLRCGICFEYF-NIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVT   68 (99)
T ss_dssp             HHHHHHTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCC
T ss_pred             HhCCCCCCcccCChhh-CCcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCC
Confidence            4567789999999999 677777 899999999999999853  57999998764

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.50  E-value=3.7e-14  Score=79.87  Aligned_cols=57  Identities=37%  Similarity=0.638  Sum_probs=51.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++.+.+++||.++...+|+.|+||.+||++++
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2cuc_A            9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS   65 (70)
T ss_dssp             CEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECC
T ss_pred             EEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECc
Confidence            368899999999999999999999999988889999995446999999999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.50  E-value=1.1e-14  Score=78.11  Aligned_cols=49  Identities=33%  Similarity=0.805  Sum_probs=41.0

Q ss_pred             ccCCccccccccccC---CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~---~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++..|+||++.+..   .++.++|||.||..||.+|+...  ..||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence            356789999998832   37889999999999999999865  58999997763

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.49  E-value=5.6e-14  Score=79.54  Aligned_cols=58  Identities=29%  Similarity=0.519  Sum_probs=51.7

Q ss_pred             CcceecccCCC-CCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPP-NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+ +..++|+|++||+|.|+.. .+++||.++...+|+.|+||.+||+.+.
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   67 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS   67 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECS
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            35788999995 8999999999999999987 7889999998767999999999999864

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.49  E-value=6e-14  Score=80.24  Aligned_cols=58  Identities=26%  Similarity=0.543  Sum_probs=51.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++... +++.|+||.+||+.++.
T Consensus        12 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~   70 (76)
T 2ed1_A           12 RVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD   70 (76)
T ss_dssp             EEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCC
T ss_pred             EEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCC
Confidence            57899999999999999999999999998889999999862 35999999999998753

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.49  E-value=4.2e-14  Score=81.67  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=51.1

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCC-eeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~-w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.++..++|+|++||+|.|+.+.+++ ||.++..  |+.|+||.+||+.++.
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~~   68 (80)
T 2i0n_A           11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVEILLS   68 (80)
T ss_dssp             CEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEET--TEEEEEEGGGEEEESS
T ss_pred             eEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEEC--CcEEEechHHEEECCC
Confidence            3478999999999999999999999999987776 9999976  9999999999998753

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=7.8e-14  Score=80.68  Aligned_cols=58  Identities=19%  Similarity=0.373  Sum_probs=51.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCC-CeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..+++|+|++||+|.|+...++ +||.++...+|+.|+||.+||++.+.
T Consensus        19 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   77 (81)
T 1x6g_A           19 QCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG   77 (81)
T ss_dssp             EEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             EEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccc
Confidence            47899999999999999999999999998766 99999975469999999999998754

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=5.9e-14  Score=80.69  Aligned_cols=55  Identities=27%  Similarity=0.585  Sum_probs=51.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+...+++||.++..  |+.|+||.+||+.++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   63 (78)
T 2yuo_A            9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKFVEVLD   63 (78)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEEC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEEC--CCEEEEehHHEEECC
Confidence            4789999999999999999999999999888999999976  999999999999874

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.49  E-value=3.6e-14  Score=77.43  Aligned_cols=54  Identities=15%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.+..+++|+|++||++.++.. +++||.++.. +|+.|+||++||+.++
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~g~~G~~P~~yv~~~~   57 (60)
T 1i07_A            4 AKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNA-SGDSGFVPNNILDIMR   57 (60)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECT-TSCEEEEEGGGEEEEC
T ss_pred             EEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEEHHHeEEcc
Confidence            5789999999999999999999999998 8899999865 5999999999999875

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.49  E-value=6.2e-14  Score=79.60  Aligned_cols=55  Identities=24%  Similarity=0.557  Sum_probs=50.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|.+||+|.++...+++||.++..  |+.|+||.+||+.++
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   61 (73)
T 3thk_A            7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLD   61 (73)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEEC--CcEEEEehHHeEECC
Confidence            4688999999999999999999999999988999999976  999999999999875

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.49  E-value=6.3e-14  Score=79.37  Aligned_cols=56  Identities=34%  Similarity=0.622  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||++.+++..+++||.++..  |+.|+||.+||+.++.
T Consensus        15 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           15 YGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEET--TEEEEEEGGGEEEEC-
T ss_pred             EEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEEC--CcEEEEChHHeEECCC
Confidence            4688999999999999999999999999888999999975  9999999999998753

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.49  E-value=2.8e-15  Score=92.73  Aligned_cols=52  Identities=33%  Similarity=0.756  Sum_probs=44.7

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..+.+++.|+||++.+ ..|+.++|||+||..||.+|+... ...||+||..+.
T Consensus        10 ~~~~~~~~C~iC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   61 (115)
T 3l11_A           10 IPSLSECQCGICMEIL-VEPVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRRRVS   61 (115)
T ss_dssp             CCCHHHHBCTTTCSBC-SSCEECTTSCEECHHHHCCCCCTT-TSBCTTTCCBCH
T ss_pred             cCCCCCCCCccCCccc-CceeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCcccC
Confidence            3456789999999999 789999999999999999998753 368999998775

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=1.3e-13  Score=79.72  Aligned_cols=57  Identities=33%  Similarity=0.573  Sum_probs=51.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC---CcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT---GRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~---g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++...+   ++.||||.+||+.++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~   68 (80)
T 1ue9_A            9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             EEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECC
Confidence            368899999999999999999999999988899999998754   389999999999874

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=80.07  Aligned_cols=55  Identities=22%  Similarity=0.566  Sum_probs=51.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++.+.+++||.++..  |+.|+||.+||++++
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   64 (70)
T 2ega_A           10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLEAQN   64 (70)
T ss_dssp             CEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECS--SCEEEEEGGGCEESC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEEC--CCEEEEehHHcEECC
Confidence            4689999999999999999999999999988999999986  999999999999875

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=7.8e-14  Score=79.51  Aligned_cols=55  Identities=33%  Similarity=0.621  Sum_probs=49.5

Q ss_pred             cceecccCCCCC-------CcceeecCCCEEEEEE-cCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNS-------EYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~-------~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..       ..+|+|++||+|.|+. ..+++||.++..  |+.|+||++||+++.
T Consensus         9 ~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHLLDHMS   71 (75)
T ss_dssp             EEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESS--SCEEEEETTTEEECC
T ss_pred             EEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEEC--CcEEEEChHHeEEcc
Confidence            468899999998       8999999999999997 468899999986  999999999999864

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.49  E-value=3.9e-14  Score=77.34  Aligned_cols=55  Identities=29%  Similarity=0.691  Sum_probs=48.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++.+++|+|++||++.++.+.+ ++||.++.. +|+.|+||.+||+.+
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVEAI   60 (60)
T ss_dssp             EEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECS-SCCEEEEEGGGEEC-
T ss_pred             EEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeC-CCCEEEecHHHEEEC
Confidence            4688999999999999999999999988754 599999976 799999999999753

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.49  E-value=1.1e-14  Score=82.82  Aligned_cols=52  Identities=33%  Similarity=0.716  Sum_probs=44.2

Q ss_pred             hhcccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      +.++++..|+||++.+ ..+++++|||. ||..|+..|      ..||+||..+.....+
T Consensus        19 ~~~~~~~~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           19 RRLQEEKLCKICMDRN-IAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             HHHHHHTBCTTTSSSB-CCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSEEEEC
T ss_pred             hcCccCCCCCCCCCCC-CCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccCcEEE
Confidence            4567789999999999 88999999999 999999987      4699999888665433

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.49  E-value=7.7e-14  Score=76.37  Aligned_cols=55  Identities=24%  Similarity=0.577  Sum_probs=49.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEE-EecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTG-LFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G-~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||++.++...+++||.++..  ++.| +||.+||+.+.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEEC--CeEEEEEChHHcEECC
Confidence            4688999999999999999999999999988999999986  7776 99999998864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.49  E-value=4.5e-14  Score=79.26  Aligned_cols=55  Identities=27%  Similarity=0.668  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++.+.+++||.++..  ++.|+||.+||+.++
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   64 (69)
T 2dil_A           10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN--GQRGFVPGSYLEKLS   64 (69)
T ss_dssp             EEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGCCBCC
T ss_pred             EEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEEC--CCEEEEehHHeEEcC
Confidence            4688999999999999999999999999988999999987  999999999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.49  E-value=9.6e-15  Score=87.66  Aligned_cols=51  Identities=10%  Similarity=-0.016  Sum_probs=45.1

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ..+.+.+.||||+++| ..|++++|||+||..||.+|+..  ...||+|+..+.
T Consensus        24 ~~~p~~~~CpI~~~~m-~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~   74 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLM-TDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLT   74 (100)
T ss_dssp             SSCSTTTBCTTTCSBC-SSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCC
T ss_pred             ccCcHhhCCcCccCcc-cCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCC
Confidence            4567899999999999 89999999999999999999985  358999997764

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.9e-14  Score=81.02  Aligned_cols=55  Identities=24%  Similarity=0.592  Sum_probs=50.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||+.++
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   66 (76)
T 2epd_A           12 EAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHN--GMRGLIPHKYITLPA   66 (76)
T ss_dssp             EEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEET--TEEEEEESSSEECCS
T ss_pred             EEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEEC--CcEEEEehHHEEEcC
Confidence            4789999999999999999999999999888999999986  999999999998764

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=7.1e-14  Score=78.92  Aligned_cols=56  Identities=29%  Similarity=0.522  Sum_probs=50.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC---CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..+++|+|++||+|.|+...   +++||.++..  |+.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   67 (71)
T 2cre_A            9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQILSG   67 (71)
T ss_dssp             EEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESS--SCCEEEETTTEEECCC
T ss_pred             EEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEEC--CCEEEEehHHEEECCC
Confidence            478999999999999999999999999987   8899999965  9999999999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.48  E-value=9.7e-15  Score=90.54  Aligned_cols=48  Identities=35%  Similarity=0.791  Sum_probs=42.7

Q ss_pred             hhcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +.+.+.+.|+||++.+ ..|+.+ +|||+||..||.+|+.    ..||+||..+
T Consensus        17 ~~l~~~~~C~IC~~~~-~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~   65 (117)
T 1jm7_B           17 DRLEKLLRCSRCTNIL-REPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA   65 (117)
T ss_dssp             HHHHHTTSCSSSCSCC-SSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC
T ss_pred             HhchhCCCCCCCChHh-hCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC
Confidence            5578899999999999 788888 9999999999999987    4699999776

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=79.84  Aligned_cols=56  Identities=25%  Similarity=0.468  Sum_probs=51.5

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   66 (81)
T 2ysq_A           11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFVRLWV   66 (81)
T ss_dssp             EEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECS--SCEEEEEGGGEEESS
T ss_pred             eEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEEC--CCEEEechHHEEEcC
Confidence            34789999999999999999999999999988999999986  999999999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.48  E-value=9.8e-15  Score=78.48  Aligned_cols=46  Identities=37%  Similarity=0.874  Sum_probs=39.1

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      -.+.+.|+||++.+ ..|+.++|||+||..|+..     ....||+||..+.
T Consensus         3 e~~~~~C~IC~~~~-~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~   48 (56)
T 1bor_A            3 EFQFLRCQQCQAEA-KCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWP   48 (56)
T ss_dssp             SCCCSSCSSSCSSC-BCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred             cccCCCceEeCCcc-CCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence            35788999999999 7889999999999999987     2357999997764

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=6.5e-14  Score=78.84  Aligned_cols=55  Identities=36%  Similarity=0.804  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.  +++||.++..  |+.|+||.+||+.++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~   65 (70)
T 2da9_A            9 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVKLLS   65 (70)
T ss_dssp             EEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECS--SCEEEEEGGGEEECC
T ss_pred             EEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEEC--CcEEEechHHeEECC
Confidence            468999999999999999999999999985  7899999975  999999999999864

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=79.93  Aligned_cols=55  Identities=29%  Similarity=0.792  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.|+.+.+++||.++..  |+.|+||.+||+.++
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   63 (79)
T 2yun_A            9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVEELP   63 (79)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESS--SCEEEECSTTEEEES
T ss_pred             EEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEEC--CCEEEEEhHHeEECC
Confidence            4688999999999999999999999999988999999965  999999999999874

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.48  E-value=1e-13  Score=77.48  Aligned_cols=55  Identities=18%  Similarity=0.364  Sum_probs=49.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+... ++||.++.. +|+.|+||.+||+++.
T Consensus        10 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~~   64 (68)
T 2k2m_A           10 WVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP-AGQEGYVPYNILTPYP   64 (68)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCCEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeC-CCCEEEEEhhhEEEcC
Confidence            478999999999999999999999999985 899999875 6999999999999864

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.3e-14  Score=79.14  Aligned_cols=56  Identities=29%  Similarity=0.542  Sum_probs=51.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++..  |+.|+||.+||++++.
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A           10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLKKAKD   65 (71)
T ss_dssp             EEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEET--TEEEEEEGGGCEECCC
T ss_pred             EEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEEC--CcEEEEEHHHeEEccC
Confidence            4688999999999999999999999999888999999998  9999999999998753

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.48  E-value=1.5e-14  Score=80.32  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=39.2

Q ss_pred             cCCccccccc-cccCCC---eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLD-RLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~-~~~~~~---~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +++.|+||++ .+.++.   +.++|||+||..||.+|+... ...||+||..+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCccc
Confidence            5689999999 773332   568999999999999997643 358999997764

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=8.1e-14  Score=81.40  Aligned_cols=55  Identities=29%  Similarity=0.514  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc--CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+..  .+++||.++..  |+.|+||.+||+.+.
T Consensus        10 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~--g~~G~fP~~yv~~~~   66 (85)
T 2dlp_A           10 YVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSGLFPADIVQPAA   66 (85)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESS--SCEEEEETTSEEECC
T ss_pred             EEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEEC--CEEEEechHHeEECC
Confidence            36899999999999999999999999987  78899999986  999999999999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=78.74  Aligned_cols=56  Identities=21%  Similarity=0.411  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||++.|++. +++||.++...+|+.|+||.+||+++.
T Consensus        19 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           19 FLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             EEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            37899999999999999999999999984 689999998656999999999999864

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=8.2e-14  Score=82.75  Aligned_cols=56  Identities=29%  Similarity=0.709  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+.  +++||.++..  |+.||||.+||+.++.
T Consensus         7 ~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~   64 (93)
T 1uff_A            7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEET--TEEEEEETTTEEECCS
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEEC--CCEEEechHHeEEcCC
Confidence            468899999999999999999999999875  7899999976  9999999999998753

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.48  E-value=1.1e-13  Score=81.05  Aligned_cols=58  Identities=19%  Similarity=0.416  Sum_probs=52.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      .++++++|.++..++|+|++||+|.++++. ++||.++...+|+.||||.+||+.++.+
T Consensus        27 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           27 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             EEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             EEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcccC
Confidence            478999999999999999999999999987 6999999944699999999999998754

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.48  E-value=2.7e-13  Score=82.97  Aligned_cols=59  Identities=17%  Similarity=0.490  Sum_probs=53.0

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.+...++|+|++||+|.|+.+.+++||.++...+|+.|+||.+||++++.
T Consensus        28 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           28 TIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             CEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            35789999999999999999999999999888999999974469999999999998764

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.48  E-value=9.8e-14  Score=78.75  Aligned_cols=55  Identities=36%  Similarity=0.797  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.|+...  +++||.++..  |+.|+||.+||+.+.
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~   67 (73)
T 2k9g_A           11 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVKLLP   67 (73)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEEC--CeEEEEchHHEEECC
Confidence            468899999999999999999999999985  7899999975  999999999999864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.5e-14  Score=82.10  Aligned_cols=55  Identities=29%  Similarity=0.623  Sum_probs=51.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++..  ++.|+||.+||+.+.
T Consensus        19 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   73 (88)
T 1x2q_A           19 KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH--RGIGLFPSNFVTTNL   73 (88)
T ss_dssp             EEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEET--TEEEEECGGGEESCS
T ss_pred             EEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEEC--CcEEEEehHHEEEcC
Confidence            4789999999999999999999999999988999999997  899999999998764

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=3.8e-14  Score=79.50  Aligned_cols=55  Identities=29%  Similarity=0.709  Sum_probs=49.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+ +++||.++..  |+.|+||.+||+.++.
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--g~~G~~P~~yv~~~~~   64 (69)
T 1uhf_A           10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--DRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECST--TCCEEECGGGCEECCC
T ss_pred             EEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeC--CcEEEEchHHeEECCC
Confidence            46889999999999999999999999988 7899999865  9999999999998753

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.47  E-value=1.9e-14  Score=80.30  Aligned_cols=56  Identities=21%  Similarity=0.585  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++...+++||.++.. +|+.|+||++||++++
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A           10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             EEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCSC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEEC-CCCEEEEchHhEEEcC
Confidence            4789999999999999999999999999888899999854 5999999999998865

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.8e-15  Score=83.98  Aligned_cols=51  Identities=33%  Similarity=0.837  Sum_probs=43.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      +++.+...|+||++.+ .. +.++|||.||..|+.+|+..  ...||+||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~-~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           10 KQLTDEEECCICMDGR-AD-LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCCSSSCCSC-CS-EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred             hcCCCCCCCeeCCcCc-cC-cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence            4567889999999999 55 99999999999999999884  3579999977653

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.47  E-value=2.4e-14  Score=80.19  Aligned_cols=56  Identities=39%  Similarity=0.873  Sum_probs=50.9

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||+|.++.+.+++||.++..  |+.|+||.+||+.++
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   63 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIKELS   63 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECST--TCCEEEETTSEEECC
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEEC--CcEEEEchHHEEECC
Confidence            34789999999999999999999999998888999999964  999999999999875

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.5e-14  Score=80.21  Aligned_cols=57  Identities=18%  Similarity=0.438  Sum_probs=51.5

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||+|.|+.+.+ ++||.++.. +|+.|+||.+||+.++
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK-VGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECT-TCCEEEEETTTSCCSC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeC-CCCEEEEEhHHEEECC
Confidence            45789999999999999999999999999875 899999986 5999999999998765

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.47  E-value=8e-14  Score=75.53  Aligned_cols=55  Identities=27%  Similarity=0.534  Sum_probs=50.2

Q ss_pred             eeeccCCC-CCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPY-KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~-~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      .++++++| .+...++|+|.+||++.|+.+.+++||.++...+|+.|+||++|+++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            56889999 89999999999999999999999999999976669999999999875

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8.4e-14  Score=79.00  Aligned_cols=56  Identities=29%  Similarity=0.650  Sum_probs=50.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.|+.+.  +++||.++..  |+.|+||.+||+.++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            9 TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEET--TEEEEECSSSEEECCC
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEEC--CeEEEeehHHEEEcCC
Confidence            478999999999999999999999999987  4499999976  9999999999998753

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=2.2e-13  Score=78.14  Aligned_cols=56  Identities=25%  Similarity=0.561  Sum_probs=50.5

Q ss_pred             cceecccCCCC-CCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPN-SEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~-~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+. ..++|+|++||+|.|+... +++||.++.. +|+.|+||.+||+.++
T Consensus        11 ~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~-~g~~G~~P~~yv~~~~   68 (77)
T 2enm_A           11 KARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN-KGEQGLVPTDYVEILP   68 (77)
T ss_dssp             EEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECT-TCCEEEEETTTEEEEC
T ss_pred             EEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEEC-CCCEEEeehHHeEECC
Confidence            47899999998 9999999999999999985 7899999954 5999999999999874

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.47  E-value=8.6e-15  Score=81.06  Aligned_cols=47  Identities=26%  Similarity=0.806  Sum_probs=40.1

Q ss_pred             cCCccccccccccCCC-------eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++++|+||++.+ ..+       +.++|||.||..|+.+|+...  ..||+||..+.
T Consensus         2 ~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBH-HHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTTTCCBCT
T ss_pred             CCCCCCccChhh-hCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCCCCccCC
Confidence            578999999988 333       889999999999999999863  47999998764

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.47  E-value=8.2e-14  Score=78.88  Aligned_cols=57  Identities=23%  Similarity=0.584  Sum_probs=50.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC-CcE---EEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRT---GLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~-g~~---G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..+++|+|++||++.+ ...+++||.++...+ |+.   |+||.+||+++++
T Consensus        12 ~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~s   72 (72)
T 2kgt_A           12 KYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERET   72 (72)
T ss_dssp             EEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEECC
T ss_pred             EEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEccC
Confidence            47899999999999999999999999 887899999998433 899   9999999998763

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=7.4e-14  Score=78.36  Aligned_cols=58  Identities=24%  Similarity=0.440  Sum_probs=51.0

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ..++++++|.++..++|+|++||+|.++.+.+++||.++.. +++.|+||.+||+.++.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYG-TRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEET-TEEEEEECGGGEEECCS
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEchHHcEECcc
Confidence            35789999999999999999999999999888999999987 44459999999998753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.47  E-value=2.1e-14  Score=85.84  Aligned_cols=51  Identities=14%  Similarity=0.035  Sum_probs=45.0

Q ss_pred             hhcccCCccccccccccCCCeeecCC-CCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQ-HTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cg-h~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++.+++.||||+++| ..|++++|| |+||+.||.+|+...  ..||+|+..+.
T Consensus        17 ~~~p~~~~CpI~~~~m-~dPV~~~cG~htf~r~cI~~~l~~~--~~cP~~~~~l~   68 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLM-CDPVVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLT   68 (98)
T ss_dssp             CSCCTTTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCC
T ss_pred             hcCcHhcCCcCccccc-cCCeECCCCCeEECHHHHHHHHHhC--CCCCCCCCCCC
Confidence            4467899999999999 899999999 999999999999853  57999997764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.8e-14  Score=81.28  Aligned_cols=53  Identities=32%  Similarity=0.639  Sum_probs=42.5

Q ss_pred             hhcccCCccccccccccC--CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~--~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+++++..|+||++.+..  ....++|||.||..||.+|+..+  ..||+||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccccc
Confidence            456778899999999842  23445999999999999999864  379999987754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=8.6e-14  Score=78.71  Aligned_cols=55  Identities=25%  Similarity=0.573  Sum_probs=49.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEE-cCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.++. ..+++||.++..  |+.|+||.+||+.++
T Consensus        12 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   67 (72)
T 1ugv_A           12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVEFLS   67 (72)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESS--SCEEEEEGGGEEECC
T ss_pred             EEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEEC--CcEEEecHHHEEECC
Confidence            5789999999999999999999998887 467899999965  999999999999875

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.46  E-value=1.5e-14  Score=89.80  Aligned_cols=52  Identities=29%  Similarity=0.651  Sum_probs=45.2

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+++.+.|+||++.+ ..|+.++|||+||..||..|+.... ..||+||..+.
T Consensus        13 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~   64 (118)
T 3hct_A           13 PPLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILL   64 (118)
T ss_dssp             SCCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCC
T ss_pred             cCCCCCCCCCcCChhh-cCeEECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcC
Confidence            4678889999999999 7888999999999999999998643 37999998764

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=77.17  Aligned_cols=55  Identities=18%  Similarity=0.440  Sum_probs=49.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||++.++.+ +++||.++.. +|+.|+||.+||+.++
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~g~~G~~P~~yv~~~~   63 (68)
T 1wxt_A            9 KMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNE-AGRSGYIPSNILEPLS   63 (68)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECT-TSCEEEEEGGGEECCC
T ss_pred             EEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEEC-CCCEEEEEhHHcEECC
Confidence            47899999999999999999999999998 4899999964 6999999999999875

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.46  E-value=6.3e-14  Score=81.29  Aligned_cols=57  Identities=30%  Similarity=0.580  Sum_probs=50.8

Q ss_pred             cceecccC-CCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC----CCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~-~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~----~g~~G~~P~~~v~~~~  170 (173)
                      .++++++| .++..++|+|++||+|.|+...+++||.++...    +|+.|+||.+||+.++
T Consensus        20 ~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             EEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            57899999 788999999999999999999888999999763    2699999999998765

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.46  E-value=7.9e-14  Score=76.57  Aligned_cols=56  Identities=32%  Similarity=0.579  Sum_probs=51.0

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+...+++||.++....|+.|+||++|++++
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEEC
Confidence            46889999999999999999999999999999999999656799999999998764

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=81.33  Aligned_cols=54  Identities=33%  Similarity=0.781  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-----CCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-----~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.++..++|+|++||+|.|+.+.     +++||.++.. +|+.|+||.+||++
T Consensus        31 ~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~-~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-SGRVGVFPSNYVAP   89 (89)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECT-TCCEEEEEGGGEEC
T ss_pred             EEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEEC-CCCEEEEcHHHCcC
Confidence            478999999999999999999999999984     7899999984 49999999999974

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=81.34  Aligned_cols=56  Identities=29%  Similarity=0.589  Sum_probs=51.8

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.|+.+.+++||.++..  ++.||||.+||+++.
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   73 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYVTEEG   73 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEEC--CcEEEEehHHEEECC
Confidence            45789999999999999999999999999988999999985  999999999999864

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-13  Score=76.85  Aligned_cols=55  Identities=15%  Similarity=0.398  Sum_probs=49.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|++||+|.|+.+. ++||.++.. +|+.|+||.+||+.+.
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            9 YVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSR-SGQAGYVPCNILGEAS   63 (68)
T ss_dssp             CEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCEEEEETTTCCBCC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEEC-CCCEEEEEHHHeEECC
Confidence            368899999999999999999999999984 899999974 5999999999998764

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=1.6e-13  Score=78.08  Aligned_cols=56  Identities=23%  Similarity=0.538  Sum_probs=50.5

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ...++++++|.+...++|+|++||+|.+++. +++||.++..  |+.|+||.+||+.++
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--g~~G~~P~~yv~~~~   65 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVKIIP   65 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEEST--TCCCEEEGGGEEECC
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEEC--CcEEEEchHHeEECC
Confidence            3457899999999999999999999999998 5789999986  999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.46  E-value=3.5e-14  Score=79.78  Aligned_cols=52  Identities=25%  Similarity=0.670  Sum_probs=42.7

Q ss_pred             hhcccCCcccccccccc--CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +..++...|+||++.+.  ..++.++|||.||..||..|+..+  .+||+||..+.
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~   62 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIE   62 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSC
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCcccc
Confidence            34567789999999874  346788999999999999999864  36999998764

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.46  E-value=1.3e-13  Score=78.47  Aligned_cols=67  Identities=25%  Similarity=0.519  Sum_probs=54.7

Q ss_pred             cCCCccccCCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC-CcEEEecCCCeEEeccc
Q psy9669         104 VFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFMKQSDFF  172 (173)
Q Consensus       104 ~~p~~~v~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~-g~~G~~P~~~v~~~~~~  172 (173)
                      |+|.... ...++++++|.++..++|+|.+||++.+++.. ++||.++...+ |+.|+||.+||+..+..
T Consensus         4 ~~p~~~~-~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A            4 WVPTKRE-EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             CBCCCSC-CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             ccCCCCC-CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            4555432 23478999999999999999999999999985 88999998433 89999999999987654

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.46  E-value=8.3e-14  Score=84.53  Aligned_cols=59  Identities=24%  Similarity=0.498  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc-CCCC--eeEEEeCCC------CcEEEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDG--WYKGTLQRT------GRTGLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~--w~~~~~~~~------g~~G~~P~~~v~~~~~~  172 (173)
                      .++++++|.++..++|+|++|++|.|+.+ .+.|  ||.|+...+      |+.||||++||+++..+
T Consensus        24 ~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             EEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            47899999999999999999999999987 3344  999998733      89999999999987643

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=77.44  Aligned_cols=57  Identities=16%  Similarity=0.372  Sum_probs=50.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCC--CcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~--g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++ .++|+|++||+|.|+.+.+++||.++...+  ++.|+||.+||++++.
T Consensus        12 ~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           12 VYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             EEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             EEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            46899999998 899999999999999998899999998642  5899999999998764

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.45  E-value=1e-13  Score=78.80  Aligned_cols=56  Identities=23%  Similarity=0.586  Sum_probs=50.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.++.+. +++||.++..  |+.|+||.+||+.+.
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNYIEMKP   66 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEET--TEEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEEC--CCEEEEehHhEEEcC
Confidence            4578999999999999999999999999887 5689999976  999999999998754

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.45  E-value=1.9e-13  Score=80.91  Aligned_cols=56  Identities=25%  Similarity=0.512  Sum_probs=50.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc--CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+  .+++||.++.. +|+.||||.+||+.++
T Consensus        19 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   76 (91)
T 1wx6_A           19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLS   76 (91)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECT-TCCEEEEEGGGEEEEE
T ss_pred             EEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeC-CCCEEEEchHHEEECC
Confidence            47899999999999999999999999998  67899999954 5999999999999875

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.45  E-value=8.4e-14  Score=78.99  Aligned_cols=63  Identities=21%  Similarity=0.489  Sum_probs=53.0

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-------ceecccCCCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-------FRCIVPYPPN  124 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-------~~~~~~~~~~  124 (173)
                      ++++++|.+ ..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++++.       +++++||.+.
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~~~~~~~alydy~a~   72 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSGTGKELVLALYDYQEK   72 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECCSSCCSCEEEESSCBCCC
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHeEEcCCCCCCceEEEeccccCC
Confidence            567899998 8999999999999999998999999984  5899999999998753       3456666553

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.3e-13  Score=76.57  Aligned_cols=56  Identities=20%  Similarity=0.439  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|++||++.++... .+|||.++.. +|+.||||.+||+.+.
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~-~g~~G~~P~~yv~~~~   65 (70)
T 2ct4_A            9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLRVTS   65 (70)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS-SSCEEEEEGGGEEECC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC-CCCEEEEEhHHeEEcC
Confidence            478999999999999999999999999876 4679999987 7999999999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.44  E-value=3.1e-14  Score=84.27  Aligned_cols=50  Identities=26%  Similarity=0.674  Sum_probs=41.2

Q ss_pred             cccCCccccccccccC--CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           6 LNDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~--~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .+++..|+||++.+..  .++.++|||.||..||..|+..+  ..||+||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence            4567899999998832  26778999999999999999854  47999998764

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=79.93  Aligned_cols=56  Identities=29%  Similarity=0.632  Sum_probs=50.6

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCC--CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.|+.+.+  ++||.++..  |+.|+||.+||+.++
T Consensus        18 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   75 (80)
T 2d8h_A           18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR--GQTGIFPANYVTMNS   75 (80)
T ss_dssp             EEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEET--TEEEEEEGGGCCBCC
T ss_pred             EEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEEC--CEEEEEchhHeEEcC
Confidence            35789999999999999999999999999875  899999996  999999999998764

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.44  E-value=1.4e-13  Score=76.32  Aligned_cols=57  Identities=28%  Similarity=0.539  Sum_probs=51.6

Q ss_pred             ceeeccCCCCC-CCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKP-QKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.+ +..++|+|.+||++.|+...+++||.++....|+.|+||++|++++
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   63 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   63 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEEC
Confidence            45789999999 9999999999999999999889999999666799999999998754

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.44  E-value=2.2e-14  Score=88.86  Aligned_cols=53  Identities=21%  Similarity=0.518  Sum_probs=45.4

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      +++.+++.|+||++.+ ..|+.++|||+||..||.+|+... ...||+||..+..
T Consensus        18 ~~~~~~~~C~IC~~~~-~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           18 AHFVKSISCQICEHIL-ADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHHHTBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred             HhccCCCCCCCCCcHh-cCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence            4567889999999999 788889999999999999999863 3579999987753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.44  E-value=6.6e-15  Score=93.92  Aligned_cols=51  Identities=29%  Similarity=0.548  Sum_probs=44.5

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +.+++.+.|+||++.+ ..|+.++|||+||..||.+|+... ...||+||..+
T Consensus        26 ~~l~~~~~C~IC~~~~-~~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~   76 (141)
T 3knv_A           26 TKLEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSG-PQNCAACVHEG   76 (141)
T ss_dssp             GGCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHGGGS-CEECHHHHHTT
T ss_pred             ccCCcCcCCCCCChhh-cCcEECCCCCccCHHHHHHHHhcC-CCCCCCCCCcc
Confidence            5678999999999999 788999999999999999999753 35799999754

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.44  E-value=3.2e-13  Score=79.74  Aligned_cols=57  Identities=21%  Similarity=0.412  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|.+||++.++.. +++||.++...+|+.|+||.+||++++.
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   61 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   61 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCC
Confidence            46889999999999999999999999998 5789999984469999999999998754

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=78.62  Aligned_cols=55  Identities=36%  Similarity=0.740  Sum_probs=49.1

Q ss_pred             cceecccCCCCC-------CcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNS-------EYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~-------~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.       .++|+|++||+|.|+.+.+ ++||.++..  |+.|+||.+||+.+.
T Consensus         9 ~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   71 (76)
T 2csi_A            9 RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNFLEEVS   71 (76)
T ss_dssp             EEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEET--TEEEEEEGGGCCBCC
T ss_pred             EEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEEC--CcEEEEehHHEEECC
Confidence            468899999988       8899999999999999865 489999986  999999999998764

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.44  E-value=9.6e-14  Score=75.49  Aligned_cols=56  Identities=23%  Similarity=0.643  Sum_probs=50.6

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+++||.++...+++.|+||++|++.+
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            46889999999999999999999999999899999999765689999999998754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.7e-14  Score=80.96  Aligned_cols=49  Identities=31%  Similarity=0.727  Sum_probs=40.9

Q ss_pred             cccCCccccccccccCCC---eeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~---~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .++...|+||++.+ ..+   +.++|||.||..||.+|+..+  ..||+||..+.
T Consensus        20 ~~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~   71 (75)
T 1x4j_A           20 QSEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLKAN--RTCPICRADSG   71 (75)
T ss_dssp             SSSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred             cCCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence            35678999999988 444   778999999999999999864  47999998764

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.44  E-value=1.5e-13  Score=74.13  Aligned_cols=55  Identities=15%  Similarity=0.546  Sum_probs=49.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.++.+.+++||.++. ..|+.|+||++|+++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEC-TTSCEEEEEGGGEEC
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-CCCCEEEEeHHHEEE
Confidence            3568899999999999999999999999998899999994 458999999999875

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.2e-13  Score=78.19  Aligned_cols=57  Identities=23%  Similarity=0.630  Sum_probs=51.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++...+|+.|+||++|++..
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~   62 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   62 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEEC
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            457899999999999999999999999999999999999765689999999999865

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.43  E-value=8.6e-14  Score=76.99  Aligned_cols=56  Identities=34%  Similarity=0.806  Sum_probs=50.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.|+.  .|+.|+||++|++...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~   57 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKELE   57 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEES--SSCEEEEETTTSCBCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEecHHHEEEcC
Confidence            4578999999999999999999999999998999999994  6899999999998753

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.43  E-value=6e-14  Score=82.88  Aligned_cols=56  Identities=39%  Similarity=0.873  Sum_probs=51.4

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||+|.|+...+++||.++..  |+.|+||.+||+.++
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~--g~~G~fPsnyV~~~~   74 (92)
T 2o2o_A           19 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIKELS   74 (92)
T ss_dssp             CEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEET--TEECCBCSSSEECCS
T ss_pred             eEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEEC--CeEEEeehHHEEECC
Confidence            35789999999999999999999999999888999999986  999999999999864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.43  E-value=2.6e-14  Score=93.87  Aligned_cols=52  Identities=31%  Similarity=0.735  Sum_probs=43.0

Q ss_pred             hhcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+.+.+.|+||++.+ ..++.+ +|||.||..||..|+... ...||+||..+.
T Consensus        49 ~~~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~  101 (165)
T 2ckl_B           49 RSLHSELMCPICLDML-KNTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLV  101 (165)
T ss_dssp             -CCHHHHBCTTTSSBC-SSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred             hhCCCCCCCcccChHh-hCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCC
Confidence            3456778999999999 667776 999999999999999852 357999998764

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.43  E-value=1.2e-13  Score=83.74  Aligned_cols=65  Identities=26%  Similarity=0.428  Sum_probs=55.3

Q ss_pred             CCCCCCCceeeccCCCCCCCccccceecCCEEEEEEE-cCCC--EEEEEeCCC------CccCcCCCccccCCc
Q psy9669          50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDG--WFKGTSQRT------QRSGVFPGNYVAPAK  114 (173)
Q Consensus        50 P~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~--w~~~~~~~~------~~~G~~p~~~v~~~~  114 (173)
                      +.|...+..++|+|+|.++..++|+|.+|++|.|+.+ .+.+  ||.|+.+.+      |+.|+||++||++..
T Consensus        16 ~~c~~~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~   89 (108)
T 1i1j_A           16 QECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQ   89 (108)
T ss_dssp             TTCCSCSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEE
T ss_pred             cccCceeeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcc
Confidence            5566678889999999999999999999999999998 3344  999997543      889999999998653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.43  E-value=1.3e-13  Score=85.09  Aligned_cols=50  Identities=28%  Similarity=0.715  Sum_probs=39.1

Q ss_pred             cCCccccccccccCCCe------------------eecCCCCCChhhHHHHHhc---ccccCCCCCCCCCce
Q psy9669           8 DLLECSVCLDRLDTSSK------------------VLPCQHTFCKKCLEEIVSS---HKELRCPECPTFVPE   58 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~------------------~~~Cgh~fc~~Cl~~~~~~---~~~~~CP~Cr~~i~~   58 (173)
                      .+..|+||++.|. .+.                  +++|+|.||..||..|+..   .....||+||..+..
T Consensus        24 ~~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4569999999883 322                  7899999999999999963   234689999987643

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.43  E-value=1.4e-13  Score=76.74  Aligned_cols=58  Identities=28%  Similarity=0.579  Sum_probs=52.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.++..++|+|.+||++.|+.+.+++||.++...+++.|+||++|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   63 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEEC
Confidence            4567899999999999999999999999999889999999765679999999999764

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.43  E-value=1.3e-13  Score=74.70  Aligned_cols=55  Identities=35%  Similarity=0.694  Sum_probs=50.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   56 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM   56 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE--CCeEEEeeHHHeEEc
Confidence            4578999999999999999999999999998899999996  589999999998764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.9e-13  Score=76.15  Aligned_cols=55  Identities=22%  Similarity=0.608  Sum_probs=48.0

Q ss_pred             cceecccCCCCCCc--ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEY--ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~--el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...+  +|+|++|++|.|++. +++||.++.. +|+.|+||++||+.++
T Consensus         7 ~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~~   63 (70)
T 2vkn_A            7 KAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRA-NGETGIIPSNYVQLID   63 (70)
T ss_dssp             EEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECT-TSCEEEEEGGGEEEEE
T ss_pred             EEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEehHHEEECC
Confidence            46889999998655  999999999999887 7899999865 6999999999998864

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.43  E-value=1.9e-13  Score=78.95  Aligned_cols=56  Identities=25%  Similarity=0.548  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCc-ceeecCCCEEEEEEcCCC-----CeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDD-----GWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~~-----~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...+ +|+|++||++.|+.+.+.     +||.++.. +|+.|+||.+||+.++
T Consensus        16 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   77 (80)
T 2v1r_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIK   77 (80)
T ss_dssp             EEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC-
T ss_pred             EEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeC-CCCeEEEEHHHeEEcC
Confidence            47899999999999 999999999999998765     99999984 5999999999999875

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=76.25  Aligned_cols=56  Identities=25%  Similarity=0.570  Sum_probs=50.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.|+.  .|+.|+||++|++...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~   57 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH--HGRLGIFPANYVEVLP   57 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEE--TTEEEEECGGGEEECC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEE--CCcEEEEehhhEEEcC
Confidence            4578999999999999999999999999998899999994  5899999999998653

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.42  E-value=1.5e-13  Score=76.85  Aligned_cols=57  Identities=28%  Similarity=0.567  Sum_probs=51.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCC---ccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ---RSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~---~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.|+.+.++   +.|+||++|+++.
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            35789999999999999999999999999989999999977666   8999999998753

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=3.5e-13  Score=73.94  Aligned_cols=55  Identities=22%  Similarity=0.644  Sum_probs=50.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.+...++|+|.+||++.|+.+.+++||.++  ..|+.|+||++|++++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~--~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE--SKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEE--CSSCEEEECGGGCCCS
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEE--ECCcEEEEeHHHEEEC
Confidence            457899999999999999999999999999899999999  4589999999999865

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.4e-13  Score=80.69  Aligned_cols=55  Identities=31%  Similarity=0.596  Sum_probs=48.6

Q ss_pred             cceecccCCCC--------CCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPN--------SEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~--------~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+.        ..++|+|++||+|.|+.+ ..+|||.++..  |+.|+||.+||+.++
T Consensus        19 ~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   82 (97)
T 2csq_A           19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC--ARLGLIPCNMVSEIQ   82 (97)
T ss_dssp             EEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEET--TEEEEEETTTSEECC
T ss_pred             EEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEEC--CcEEEEehHHeEECC
Confidence            36899999998        688999999999999965 45789999996  999999999999874

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.42  E-value=1.9e-13  Score=80.59  Aligned_cols=58  Identities=28%  Similarity=0.588  Sum_probs=49.7

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEc-------------CCC--CeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKK-------------RDD--GWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~-------------~~~--~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++|+|.++..++|+|++||+|.|+..             ..+  |||.++...+|+.|+||.+||+.++
T Consensus        12 ~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~   84 (90)
T 3o5z_A           12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLG   84 (90)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEE
T ss_pred             cEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEec
Confidence            357899999999999999999999999842             223  8999998656999999999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8.4e-14  Score=82.81  Aligned_cols=50  Identities=18%  Similarity=0.485  Sum_probs=42.5

Q ss_pred             hcccCCccccccccccCCCeeec-CCCCCChhhHHHHHhcc----cccCCCC--CCCC
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSH----KELRCPE--CPTF   55 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~-Cgh~fc~~Cl~~~~~~~----~~~~CP~--Cr~~   55 (173)
                      ...+.+.||||+++| ..|++++ |||+||+.||..|+..+    ....||+  |+..
T Consensus         3 ~~~~~~~CPI~~~~~-~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            3 SGSSGFTCPITKEEM-KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCSSCCBCTTTCSBC-SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CCCcEeECcCcCchh-cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            356789999999999 8999995 99999999999999854    2468999  8754

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.41  E-value=2.2e-13  Score=74.25  Aligned_cols=54  Identities=24%  Similarity=0.508  Sum_probs=49.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+...+++||.++.  .|+.|+||++|++.+
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL   59 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEE--CCCEEEechHHEEEC
Confidence            478999999999999999999999999998999999995  489999999998754

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.41  E-value=1.8e-13  Score=74.12  Aligned_cols=54  Identities=35%  Similarity=0.713  Sum_probs=49.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++++++|.++..++|+|.+||++.++.+.+++||.++.  .|+.|+||++|++++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   56 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVREI   56 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEE--CCeEEEEehHHeEEc
Confidence            468899999999999999999999999998999999995  589999999998764

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.41  E-value=3e-13  Score=75.85  Aligned_cols=57  Identities=23%  Similarity=0.530  Sum_probs=51.6

Q ss_pred             ceeeccCCCC-CCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYK-PQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~-~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +.++|+++|. +...++|+|.+||++.|+.+.+++||.++...+|+.|+||++|+++.
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            4578999995 99999999999999999999889999999766699999999999765

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.41  E-value=2.5e-13  Score=73.56  Aligned_cols=54  Identities=37%  Similarity=0.811  Sum_probs=49.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   56 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKP   56 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEE
Confidence            4568899999999999999999999999998999999995  58999999999875

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.41  E-value=2.5e-13  Score=76.60  Aligned_cols=57  Identities=32%  Similarity=0.568  Sum_probs=51.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+...+++||.|+....|+.|+||++|++++
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEEC
Confidence            356889999999999999999999999999999999999656799999999999765

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=4.2e-13  Score=79.85  Aligned_cols=57  Identities=37%  Similarity=0.789  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc--CC--CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK--RD--DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~--~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+..  .+  ++||.++...+|+.|+||.+||++++
T Consensus        18 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   78 (94)
T 2e5k_A           18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD   78 (94)
T ss_dssp             EEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECC
T ss_pred             EEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcc
Confidence            47899999999999999999999999987  34  89999996446999999999999864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.40  E-value=3.6e-13  Score=73.42  Aligned_cols=55  Identities=31%  Similarity=0.718  Sum_probs=50.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   59 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGKQGLFPNNYVTK   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCEEEEEcHHHEEE
Confidence            35678999999999999999999999999998999999996  58999999999864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.4e-14  Score=79.88  Aligned_cols=50  Identities=32%  Similarity=0.721  Sum_probs=41.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      +.+++..+|+||++.+ ..+++++|||. ||..|+.+.      ..||+||..+....
T Consensus        20 ~~~~~~~~C~IC~~~~-~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRN-IAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHHHHHHSCSSSCSSC-CCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCCC
T ss_pred             HcCCCCCCCCcCCCCC-CCEEEecCCCHHHHHHHhhCC------CCCccCCceecCcE
Confidence            4466788999999999 78999999999 999999642      47999998876543

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=1.7e-13  Score=81.82  Aligned_cols=56  Identities=34%  Similarity=0.623  Sum_probs=49.7

Q ss_pred             cceecccCCCCC------CcceeecCCCEEEEE-EcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNS------EYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~------~~el~~~~g~~v~v~-~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++.      .++|+|++||+|.|+ ...+++||.++.. +|+.|+||.+||+.+.
T Consensus        19 ~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~g~~G~~Psnyv~~~~   81 (96)
T 1wie_A           19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECCC
T ss_pred             EEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC-CCCEEEEchHHEEEcC
Confidence            468899999987      899999999999999 7778899999984 5999999999998764

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.40  E-value=3.2e-13  Score=75.39  Aligned_cols=55  Identities=31%  Similarity=0.716  Sum_probs=50.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +.++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   58 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMI--HGESGFFPINYVEVI   58 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEE--TTEEEEEEGGGEEES
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEEc
Confidence            4578999999999999999999999999999999999995  589999999999865

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.40  E-value=2.8e-13  Score=73.60  Aligned_cols=54  Identities=35%  Similarity=0.692  Sum_probs=49.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|+++
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   58 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVRE   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEE
Confidence            4578999999999999999999999999998999999995  58999999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.40  E-value=3.7e-13  Score=76.38  Aligned_cols=59  Identities=29%  Similarity=0.681  Sum_probs=52.7

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+.+++||.++....|+.|+||++|++++
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            34567899999999999999999999999999889999999755789999999999764

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.40  E-value=4.9e-13  Score=75.20  Aligned_cols=53  Identities=26%  Similarity=0.459  Sum_probs=43.8

Q ss_pred             ecccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         117 CIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       117 ~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +.+++.++..++|+|++||+|.|++. .+++||.++...+|+.|+||++||++.
T Consensus        15 ~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             SSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            34445455566999999999999998 578999998656799999999999875

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.40  E-value=3.3e-13  Score=74.65  Aligned_cols=56  Identities=14%  Similarity=0.523  Sum_probs=50.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++.
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   59 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKY   59 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEC-TTSCEEEEEGGGEEEC
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEE-CCCCEEEEChHHEeec
Confidence            4578999999999999999999999999998899999994 4689999999998764

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=5e-13  Score=76.94  Aligned_cols=62  Identities=23%  Similarity=0.456  Sum_probs=54.2

Q ss_pred             CCCCCCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          51 ECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        51 ~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .-......++++++|.++..++|+|.+||+|.|+.+ +++||.++....++.|+||.+|++++
T Consensus        12 ~~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~   73 (79)
T 1x6b_A           12 SSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI   73 (79)
T ss_dssp             CCCSSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEE
T ss_pred             CCCCCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEEC
Confidence            334456678999999999999999999999999999 89999999755799999999999765

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.39  E-value=3.7e-13  Score=78.69  Aligned_cols=53  Identities=15%  Similarity=0.452  Sum_probs=48.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.+...++|+|.+||+|.|+.. +++||.++.. +|+.|+||.+||++
T Consensus        33 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           33 IVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-ANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECT-TSCEEEEEGGGBCC
T ss_pred             EEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEEC-CCCEEEeehHHEEe
Confidence            36889999999999999999999999998 6899999965 69999999999974

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.39  E-value=3.3e-13  Score=74.02  Aligned_cols=54  Identities=35%  Similarity=0.788  Sum_probs=49.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+ .+++||.|+.  .|+.|+||++|++.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEI   57 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEEC
Confidence            46889999999999999999999999998 7889999995  589999999999865

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.39  E-value=6e-13  Score=78.89  Aligned_cols=56  Identities=25%  Similarity=0.548  Sum_probs=50.6

Q ss_pred             cceecccCCCCCCc-ceeecCCCEEEEEEcCCC-----CeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDD-----GWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~~-----~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...+ +|+|++||+|.|+...+.     +||.++.. +|+.||||.+||+.++
T Consensus        16 ~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~-~g~~G~~P~~yv~~~~   77 (92)
T 1jqq_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIK   77 (92)
T ss_dssp             EEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEET-TSCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeC-CCCEEEEehHHeEECC
Confidence            47899999999999 999999999999998765     99999984 5999999999999875

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.39  E-value=3.4e-13  Score=73.54  Aligned_cols=56  Identities=20%  Similarity=0.495  Sum_probs=49.8

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.|+.. .+++||.++....++.|+||++|+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   59 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP   59 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEE
Confidence            356889999999999999999999999998 48899999975579999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=5e-13  Score=75.29  Aligned_cols=55  Identities=33%  Similarity=0.719  Sum_probs=49.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ...++|+++|.++..++|+|.+||++.|+...+++||.++.  .++.|+||++|+++
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET--HQGIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEC--SSCEEECTTCCEEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCCEEEechhhCcc
Confidence            45678999999999999999999999999998899999995  47899999999864

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.39  E-value=1.8e-13  Score=79.53  Aligned_cols=57  Identities=28%  Similarity=0.669  Sum_probs=49.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc---------------CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~---------------~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++..++|+|++||+|.|+..               .+.+||.++...+|+.|+||.+||+.+.
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~   78 (83)
T 3i5r_A            7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   78 (83)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECC
Confidence            56899999999999999999999999853               2348999988756999999999999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.2e-13  Score=74.62  Aligned_cols=57  Identities=35%  Similarity=0.799  Sum_probs=51.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI--QDRIGFFPANFVQRLS   63 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEEC--SSCEEEEETTTEEECC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHeEECC
Confidence            45678999999999999999999999999998899999994  5899999999998653

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=4.5e-13  Score=75.37  Aligned_cols=58  Identities=38%  Similarity=0.768  Sum_probs=52.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++....++.|+||++|++++
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEEC
Confidence            4567899999999999999999999999999889999999666799999999999865

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.39  E-value=3.5e-13  Score=75.80  Aligned_cols=58  Identities=28%  Similarity=0.560  Sum_probs=52.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++...+++.|+||++|++.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEES
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEEC
Confidence            3457899999999999999999999999999889999999865679999999999865

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.39  E-value=3.8e-13  Score=77.34  Aligned_cols=59  Identities=24%  Similarity=0.629  Sum_probs=52.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++....|+.|+||++|++++.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   63 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD   63 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC-
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECC
Confidence            34578999999999999999999999999998899999997557999999999998764

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=5.5e-13  Score=75.02  Aligned_cols=58  Identities=57%  Similarity=1.089  Sum_probs=52.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++....++.|+||++|++++
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV   64 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEET
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEEC
Confidence            4567899999999999999999999999999899999999765789999999999865

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.38  E-value=4.8e-13  Score=74.53  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             ceeeccCCCCCC--CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQ--KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++  ..++|+|.+||++.|+.+.+++||.|+.  .|+.|+||++|++.+
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLL   63 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEE--TTEEEEEEGGGBCCB
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHhEEEc
Confidence            357899999998  8889999999999999999999999985  489999999999865

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.38  E-value=1.3e-13  Score=78.97  Aligned_cols=66  Identities=17%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             CCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-------ceecccCCCCCCcceeecCC
Q psy9669          67 PQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-------FRCIVPYPPNSEYELELRVG  134 (173)
Q Consensus        67 ~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-------~~~~~~~~~~~~~el~~~~g  134 (173)
                      ++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++.+.       ++++++|.++..++|+|.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~~~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSGTGKELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEE--TTEEECCCGGGEEECCCSSCCCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEEeeEEEEcCCCCCCceEEECCCcCCCCCCccccCCC
Confidence            356789999999999999998899999984  5899999999998653       56899999999999999864

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.38  E-value=6.5e-13  Score=74.26  Aligned_cols=58  Identities=22%  Similarity=0.514  Sum_probs=52.1

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ....++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (68)
T 2djq_A            6 SGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVEVIS   63 (68)
T ss_dssp             SCCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEE--TTEEEEEESSSEETTC
T ss_pred             CceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeehHHEEEcC
Confidence            456788999999999999999999999999998899999995  5899999999998753

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.38  E-value=4.5e-13  Score=74.02  Aligned_cols=57  Identities=39%  Similarity=0.751  Sum_probs=50.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.++.+.+++||.++....++.|+||++|++++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            346889999999999999999999999999889999999755799999999998754

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.38  E-value=6.1e-13  Score=82.51  Aligned_cols=57  Identities=21%  Similarity=0.430  Sum_probs=51.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEe-CCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~-~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++.+++|+|++||++.++...+++||.++. ...|+.|+||.+||+.++
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~   62 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID   62 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEEC
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEcc
Confidence            468899999999999999999999999988899999997 236889999999998875

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.38  E-value=4.6e-13  Score=72.47  Aligned_cols=55  Identities=35%  Similarity=0.766  Sum_probs=49.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEC
Confidence            3568899999999999999999999999998899999996  489999999998754

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.38  E-value=4e-13  Score=72.71  Aligned_cols=54  Identities=35%  Similarity=0.768  Sum_probs=49.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            568899999999999999999999999998899999996  689999999998754

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.38  E-value=3.7e-13  Score=72.83  Aligned_cols=55  Identities=38%  Similarity=0.796  Sum_probs=49.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|+++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEE--CCCEEEEehHHEEe
Confidence            34578999999999999999999999999998899999995  58999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.38  E-value=4e-13  Score=72.75  Aligned_cols=54  Identities=31%  Similarity=0.648  Sum_probs=49.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~   57 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQD   57 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEE
Confidence            4578999999999999999999999999998899999996  58999999999864

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.38  E-value=3e-13  Score=75.41  Aligned_cols=58  Identities=24%  Similarity=0.470  Sum_probs=51.2

Q ss_pred             CceeeccCCCCC-CCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKP-QKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.+ +..++|+|.+||++.|+.+ .+++||.++...+++.|+||++|++++
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   65 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL   65 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEES
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            456789999995 8999999999999999985 788999999766799999999998754

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.38  E-value=6.3e-13  Score=74.07  Aligned_cols=56  Identities=25%  Similarity=0.586  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEEC-SSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEE-CCCCEEEEEhHhEEEc
Confidence            3578999999999999999999999999998899999994 3689999999999875

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.38  E-value=3.4e-13  Score=78.16  Aligned_cols=61  Identities=31%  Similarity=0.445  Sum_probs=52.0

Q ss_pred             CCCCceeeccCCC-CCCCccccceecCCEEEEEEEcCCCEEEEEeCC----CCccCcCCCccccCC
Q psy9669          53 PTFVPEYIAIYPY-KPQKDDELELRRGSVYTVTERCQDGWFKGTSQR----TQRSGVFPGNYVAPA  113 (173)
Q Consensus        53 r~~i~~~~~~~~~-~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~----~~~~G~~p~~~v~~~  113 (173)
                      ......++|+++| .++..++|+|.+||+|.|+.+.+++||.|+...    +++.|+||++||+.+
T Consensus        15 ~~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~   80 (83)
T 2ke9_A           15 PRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV   80 (83)
T ss_dssp             --CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESS
T ss_pred             CCCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEEC
Confidence            3445678999999 789999999999999999999888999999643    378999999999865

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.38  E-value=2.8e-14  Score=81.82  Aligned_cols=55  Identities=22%  Similarity=0.450  Sum_probs=49.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+...++|+|++||+|.|+...+++||.++.. +|+.||||++||++.
T Consensus        22 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVEK   76 (77)
T ss_dssp             CCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCS-SSCCCCCBSTTCCCC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEEC-CCCEEEEehHHEEEc
Confidence            3789999999999999999999999999888899999873 599999999999864

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.37  E-value=1.5e-12  Score=82.98  Aligned_cols=55  Identities=27%  Similarity=0.681  Sum_probs=50.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+. ++|||.++..  |+.||||.+||+.+.
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~--g~~G~fP~~yv~~~~   62 (142)
T 2kbt_A            7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPSNYVEEDY   62 (142)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEET--TEEEEEETTSEEESS
T ss_pred             EEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEEC--CeeEEechHHEEEcc
Confidence            468899999999999999999999999984 7899999986  999999999999864

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.37  E-value=7e-13  Score=70.66  Aligned_cols=52  Identities=35%  Similarity=0.659  Sum_probs=47.1

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCcccc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+ ++||.++.  .++.|+||++|++
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE--TTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE--CCeEEEeeHHHcC
Confidence            4678999999999999999999999999875 79999996  6899999999974

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=73.29  Aligned_cols=56  Identities=23%  Similarity=0.452  Sum_probs=50.8

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVGKH   62 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC--TTCCEEEESSSEECC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCeEEEEehHHeEEC
Confidence            35678999999999999999999999999998899999994  589999999999865

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.37  E-value=8.4e-13  Score=72.43  Aligned_cols=56  Identities=30%  Similarity=0.558  Sum_probs=49.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ...++|+++|.+...++|+|.+||++.|+.+. ++||.++....|+.|+||++|+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~   61 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEE
Confidence            34678999999999999999999999999985 599999964578999999999864

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.37  E-value=6.6e-13  Score=75.17  Aligned_cols=56  Identities=20%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             CceeeccCCCCCC--CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQ--KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.+.  ..++|+|.+||+|.|+.+.+++||.++.  .++.|+||++|++.+
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   66 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL--NNKVGTFKFIYVDVL   66 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEEC--SSCEEEECSTTEEEC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEE--CCCEEEEeHHHEEEC
Confidence            4567899999975  8899999999999999998999999985  589999999999865

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.37  E-value=5.1e-13  Score=73.26  Aligned_cols=53  Identities=23%  Similarity=0.516  Sum_probs=48.0

Q ss_pred             CccCcCCCccccCC-------cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEe
Q psy9669         100 QRSGVFPGNYVAPA-------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL  152 (173)
Q Consensus       100 ~~~G~~p~~~v~~~-------~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~  152 (173)
                      |+.|+||.+|+++.       .++++++|.++..++|+|++||++.++.+.+++||.++.
T Consensus         2 g~~G~~P~~yv~~~~~~~~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             CEEEEEEGGGEEECCCCSSSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             CCccccccceEeecCCCCCceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            67899999999864       368999999999999999999999999998899999985

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2.5e-13  Score=76.57  Aligned_cols=57  Identities=28%  Similarity=0.539  Sum_probs=51.9

Q ss_pred             ceeeccCCCCC-CCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKP-QKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.+ +..++|+|.+||++.|+.+.+++||.++....++.|+||++|++++
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEEC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            45789999999 9999999999999999999899999999666799999999999865

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.37  E-value=4.8e-13  Score=72.42  Aligned_cols=54  Identities=28%  Similarity=0.587  Sum_probs=48.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCcccc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      .++++++|.++..++|+|.+||++.|+...+ ++||.++....++.|+||++|++
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            3578999999999999999999999999876 79999997447899999999985

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.37  E-value=4.4e-13  Score=75.02  Aligned_cols=55  Identities=36%  Similarity=0.756  Sum_probs=49.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.  +++||.++.  .|+.|+||++|++..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~~P~~yV~~~   59 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   59 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEE--CCcEEEecHHHEEEC
Confidence            3568899999999999999999999999985  789999995  589999999999865

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.37  E-value=5.8e-13  Score=72.58  Aligned_cols=55  Identities=33%  Similarity=0.803  Sum_probs=49.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.  +++||.++.  .++.|+||++|++.
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   59 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVEL   59 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE--CCEEEEEeHHHEEE
Confidence            35678999999999999999999999999986  689999996  58999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.37  E-value=4.9e-13  Score=74.53  Aligned_cols=58  Identities=29%  Similarity=0.674  Sum_probs=51.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++++++|.++..++|+|.+||++.|+.+.+++||.++. ..++.|+||++|+++.
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   64 (67)
T 1aww_A            7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBC-TTSCBCCEETTTBCCS
T ss_pred             CCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEE-CCCCEEEEchHhEEEc
Confidence            345689999999999999999999999999998889999984 4689999999999865

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.36  E-value=5.7e-13  Score=76.12  Aligned_cols=60  Identities=32%  Similarity=0.524  Sum_probs=52.5

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v~~~~  114 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+.+++||.++.+. +++.|+||++|++.+.
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~   69 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS   69 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECC
Confidence            34568999999999999999999999999998889999999753 4689999999998663

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.36  E-value=6e-13  Score=72.49  Aligned_cols=53  Identities=23%  Similarity=0.541  Sum_probs=48.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH--NGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEeHhhEE
Confidence            4578999999999999999999999999998899999996  4899999999985

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.6e-13  Score=74.21  Aligned_cols=56  Identities=21%  Similarity=0.484  Sum_probs=50.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNYLEPV   62 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEE--TTEEEEECSTTEEEC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEe--CCCEEEeehHHeEEC
Confidence            34578999999999999999999999999998999999984  589999999999865

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.36  E-value=5.2e-13  Score=72.28  Aligned_cols=54  Identities=39%  Similarity=0.777  Sum_probs=48.9

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++++++|.++..++|+|.+||.+.++.+.+++||.+.  ..|+.|+||++|+++.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~--~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS--YNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEE--ETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEE--ECCcEEEEehHHEEEC
Confidence            46889999999999999999999999999989999997  4589999999998753

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.36  E-value=5.6e-13  Score=75.37  Aligned_cols=58  Identities=26%  Similarity=0.484  Sum_probs=51.6

Q ss_pred             CceeeccCCCCC-CCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKP-QKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~-~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.+ +..++|+|.+||++.|+.+ .+++||.++...+++.|+||++|++++
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   66 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            456789999995 8999999999999999987 788999999766799999999999865

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.36  E-value=7.1e-13  Score=72.71  Aligned_cols=55  Identities=27%  Similarity=0.707  Sum_probs=49.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++..  ++.|+||++|+++
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC--CCEEEechhHEEE
Confidence            345789999999999999999999999999988999999964  7899999999875

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.36  E-value=2.6e-12  Score=73.76  Aligned_cols=54  Identities=24%  Similarity=0.460  Sum_probs=44.2

Q ss_pred             eecccCCCCC---CcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         116 RCIVPYPPNS---EYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       116 ~~~~~~~~~~---~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .+.+++.++.   .++|+|++||+|.|+... +++||.++...+|+.|+||.+||+++
T Consensus        19 ~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             SCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             EECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            3445565532   589999999999999984 89999999744699999999999875

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=8.8e-13  Score=74.36  Aligned_cols=57  Identities=28%  Similarity=0.607  Sum_probs=50.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEE-EcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+. ..+++||.++. ..|+.|+||++|+++.
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQKR   68 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEC-TTSCEEEEETTSEEC-
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEe-CCCCEEEEehHHeEEc
Confidence            346789999999999999999999999999 67889999994 4789999999999765

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.36  E-value=8.1e-13  Score=74.53  Aligned_cols=59  Identities=19%  Similarity=0.476  Sum_probs=52.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+... +++||.++....|+.|+||++|++.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR   65 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECC
Confidence            45678999999999999999999999999986 889999997457899999999998653

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=8.3e-13  Score=74.26  Aligned_cols=58  Identities=28%  Similarity=0.605  Sum_probs=52.0

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++.
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   64 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST--SEEQGWVPATYLEAQN   64 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEEC--SSCEEEEEGGGCEESC
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEE--CCCEEEEehHHcEECC
Confidence            356688999999999999999999999999998999999995  4899999999998653

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.35  E-value=5.9e-13  Score=74.19  Aligned_cols=54  Identities=28%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             eeeccCCCCCC--CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQ--KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++  ..++|+|.+||++.|+.+.+++||.|..  .|+.|+||++|++.+
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~   58 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF   58 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEe--CCcEEEEehHHeEEC
Confidence            36789999998  8999999999999999999999999985  589999999999865

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.35  E-value=6.9e-13  Score=78.75  Aligned_cols=56  Identities=30%  Similarity=0.579  Sum_probs=50.0

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCC----CCeeEEEeCCCCc-EEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGR-TGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~g~-~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||+|.|+.+.+    ++||.++..  ++ .|+||.+||+.++
T Consensus        18 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~--~~~~G~~P~~yv~~~~   78 (93)
T 1wxu_A           18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD--GQTTGLIPANYVKILG   78 (93)
T ss_dssp             BCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESS--SSSCEEECSTTEEECC
T ss_pred             EEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeC--CcCEEEEehHHEEEcC
Confidence            45799999999999999999999999999876    599999876  55 9999999999875

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.35  E-value=7.6e-13  Score=73.08  Aligned_cols=56  Identities=29%  Similarity=0.691  Sum_probs=49.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.  +++||.++.  .|+.|+||++|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL--NGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEE--CCeEEEEeHHHEEEC
Confidence            45678999999999999999999999999875  679999995  589999999998754

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.35  E-value=7.1e-13  Score=74.32  Aligned_cols=57  Identities=32%  Similarity=0.668  Sum_probs=51.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.+...++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   62 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSI-GKGQEGYFPANHVASE   62 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE-ETTEEEEEEGGGEEEH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEe-CCCCEEEEchHHeEEC
Confidence            56788999999999999999999999999998899999985 4689999999999764

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.2e-13  Score=78.48  Aligned_cols=59  Identities=29%  Similarity=0.642  Sum_probs=53.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||+|.|+.+.+++||.++.+.+++.|+||.+||+.+.
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   75 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR   75 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEE
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcC
Confidence            45678999999999999999999999999988899999997666899999999998653

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=73.46  Aligned_cols=56  Identities=36%  Similarity=0.741  Sum_probs=50.8

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|+++.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAEQ   62 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEES--SSCEEEEETTTEEEC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEehHHeEEc
Confidence            45678999999999999999999999999998899999994  689999999999765

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=75.44  Aligned_cols=58  Identities=36%  Similarity=0.858  Sum_probs=52.2

Q ss_pred             CCCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..+..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||.+|++.+
T Consensus        15 ~~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   72 (78)
T 2ed0_A           15 SYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM--NGVTGLFPGNYVESI   72 (78)
T ss_dssp             SCSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEEC
T ss_pred             CcCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEE--CCcEEEeChHHEEEc
Confidence            3455789999999999999999999999999998999999994  589999999999765

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.35  E-value=3.4e-13  Score=77.30  Aligned_cols=62  Identities=24%  Similarity=0.453  Sum_probs=53.8

Q ss_pred             CCCCCCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          51 ECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        51 ~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .-......++|+++|.++..++|+|.+||++.|+...+++||.|+.  .|+.|+||++|++.+.
T Consensus        13 ~~~~~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~--~g~~G~fP~nyV~~~~   74 (79)
T 1z9q_A           13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILK   74 (79)
T ss_dssp             -CCSSCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEE--TTEEEEEEGGGEEESS
T ss_pred             CCCCCceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEE--CCeEEEecHHHEEECC
Confidence            3344566789999999999999999999999999999999999995  4899999999998653

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.35  E-value=7.8e-13  Score=74.80  Aligned_cols=58  Identities=24%  Similarity=0.569  Sum_probs=51.2

Q ss_pred             CCCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .....++++++|.++..++|+|.+||++.|+++.+++||.++.  .|+.|+||++|++.+
T Consensus        11 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   68 (72)
T 4glm_A           11 GALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSL--KGRTGIFPYRFVKLC   68 (72)
T ss_dssp             --CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CCCeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEE--CCcEEEEChHHeEEC
Confidence            3456789999999999999999999999999998999999995  589999999999765

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.35  E-value=2.7e-13  Score=82.19  Aligned_cols=57  Identities=19%  Similarity=0.384  Sum_probs=49.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++.+++|+|++||++.++.+.+++||.++... .|+.|+||.+||+.++
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~   64 (108)
T 2rqv_A            7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIID   64 (108)
T ss_dssp             CEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCC
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEec
Confidence            37899999999999999999999999988889999999751 2344999999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.35  E-value=3e-13  Score=88.88  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .+.+.+.||||.++| ..|++++|||+||..||..|+..++. .||+|+.++.
T Consensus       102 ~ip~~f~CPI~~elm-~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~  152 (179)
T 2f42_A          102 EIPDYLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLT  152 (179)
T ss_dssp             CCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCC
T ss_pred             CCcHhhcccCccccC-CCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCC
Confidence            467889999999999 89999999999999999999986433 6999997764

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.35  E-value=9.7e-13  Score=76.52  Aligned_cols=59  Identities=29%  Similarity=0.641  Sum_probs=53.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.++....|+.|+||++|++++.
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD   64 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            45678999999999999999999999999998899999997557899999999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.34  E-value=2.5e-13  Score=89.58  Aligned_cols=53  Identities=30%  Similarity=0.661  Sum_probs=45.6

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      +++++.+.|+||++.+ ..|+.++|||+||..||.+|+.... ..||+||..+..
T Consensus        13 ~~~~~~~~C~IC~~~~-~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~   65 (170)
T 3hcs_A           13 PPLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLE   65 (170)
T ss_dssp             SCCCGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred             cCCCCCCCCCCCChhh-cCcEECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence            4678899999999999 7888899999999999999997543 489999987653

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.34  E-value=4.4e-13  Score=82.39  Aligned_cols=56  Identities=29%  Similarity=0.619  Sum_probs=49.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEE-----cCCCCeeEEEeCCC--------CcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQRT--------GRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~-----~~~~~w~~~~~~~~--------g~~G~~P~~~v~~~  169 (173)
                      .++++++|.+...++|+|++||+|.|+.     ..+++||.++...+        |+.|+||.+||+++
T Consensus        46 ~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4789999999999999999999999999     67889999986422        78999999999875

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=81.04  Aligned_cols=57  Identities=25%  Similarity=0.558  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v~~~~~  171 (173)
                      .++++|+|.++..++|+|++||+|.|+++. ++||.++... +|+.|+||.+||+..+.
T Consensus        61 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~~  118 (119)
T 2rqr_A           61 HGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKEV  118 (119)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCCC
T ss_pred             EEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEecc
Confidence            478999999999999999999999999985 6999999943 38999999999987654

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.34  E-value=1.1e-12  Score=72.62  Aligned_cols=55  Identities=36%  Similarity=0.709  Sum_probs=49.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEE--CCcEEEEehHHeEEC
Confidence            4578999999999999999999999999998899999995  589999999998754

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.34  E-value=1e-12  Score=74.10  Aligned_cols=59  Identities=24%  Similarity=0.549  Sum_probs=52.0

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+..++++++|.+...++|+|.+||++.|+.+  .+++||.++. ..|+.|+||++|++.+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~~   65 (71)
T 1u5s_A            5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEE-TTTEEEEEETTSEEECC
T ss_pred             ccEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEe-CCCCEEEEeHHHEEECC
Confidence            35668899999999999999999999999998  6889999984 46899999999998763

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.34  E-value=9.7e-13  Score=72.65  Aligned_cols=55  Identities=35%  Similarity=0.658  Sum_probs=50.1

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   61 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVREI   61 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEE--CCCEEEEehHHeEEc
Confidence            3578999999999999999999999999998899999995  589999999999765

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-12  Score=74.08  Aligned_cols=56  Identities=25%  Similarity=0.560  Sum_probs=50.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++...
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   65 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH--NGIDGLIPHQYIVVQD   65 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEECSSSEEECC
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE--CCEEEEEchHHeEEcC
Confidence            3578999999999999999999999999998899999996  5899999999998653

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=1.5e-12  Score=75.19  Aligned_cols=58  Identities=21%  Similarity=0.405  Sum_probs=51.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCC---CccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT---QRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~---~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++...+   ++.|+||++|++.+.
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~   68 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECC
Confidence            3578999999999999999999999999998899999997654   489999999998663

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.34  E-value=1.4e-12  Score=76.53  Aligned_cols=58  Identities=41%  Similarity=0.807  Sum_probs=50.8

Q ss_pred             CCCceeeccCCCCCCCccccceecCCEEEEEEEc-----CCCEEEEEeCCCCccCcCCCccccC
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-----QDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-----~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      .....++|+++|.++..++|+|.+||+|.|+.+.     +++||.|+. ..|+.|+||++|+++
T Consensus        27 ~~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~-~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           27 PAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQL-PSGRVGVFPSNYVAP   89 (89)
T ss_dssp             -CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEEC-TTCCEEEEEGGGEEC
T ss_pred             CCCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEE-CCCCEEEEcHHHCcC
Confidence            3456789999999999999999999999999985     789999995 268999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.34  E-value=1.7e-12  Score=72.78  Aligned_cols=56  Identities=34%  Similarity=0.696  Sum_probs=50.9

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++.+  ++.|+||++|++.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~   63 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN--GQRGFVPGSYLEKL   63 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGCCBC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEEC--CCEEEEehHHeEEc
Confidence            346789999999999999999999999999988999999964  89999999999865

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.34  E-value=1.4e-12  Score=72.92  Aligned_cols=56  Identities=25%  Similarity=0.548  Sum_probs=50.8

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++  ..++.|+||.+|++.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~--~~g~~G~~P~~yv~~~   62 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE--HHGRVGIFPRTYIELL   62 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEE--CSSCEEEEETTTEEEC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEE--ECCCEEEEchHHEEEC
Confidence            4467899999999999999999999999999889999999  4589999999999865

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.34  E-value=1.4e-12  Score=73.93  Aligned_cols=57  Identities=33%  Similarity=0.699  Sum_probs=51.6

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++.+
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   68 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGML--HGQSGFFPLSYVQVL   68 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEE--CCCEEEeChHHEEEC
Confidence            345688999999999999999999999999998999999995  589999999999765

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.34  E-value=2.2e-12  Score=72.07  Aligned_cols=57  Identities=19%  Similarity=0.408  Sum_probs=50.4

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++++++|.++..++|+|.+||++.|+.+. ++||.++. ..|+.|+||++|+++.
T Consensus         7 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~-~~g~~G~~P~~yv~~~   63 (68)
T 2k2m_A            7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRD-PAGQEGYVPYNILTPY   63 (68)
T ss_dssp             CCCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEEC-TTSCCEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEe-CCCCEEEEEhhhEEEc
Confidence            345688999999999999999999999999985 89999984 5689999999999865

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.4e-12  Score=75.22  Aligned_cols=56  Identities=21%  Similarity=0.443  Sum_probs=51.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.+  ++.||||++|++++.
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   64 (80)
T 2ekh_A            9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLVLDE   64 (80)
T ss_dssp             EEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEET--TEEEEEETTTEECCC
T ss_pred             CEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEEC--CCEEEEEhHHeEECC
Confidence            45789999999999999999999999999999999999954  899999999998764

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.9e-12  Score=76.04  Aligned_cols=59  Identities=25%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             CCCceeeccCCCCCC--CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          54 TFVPEYIAIYPYKPQ--KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~--~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .....++++|+|.+.  ..++|+|.+||+|.|+.+.+++||.|..  .|+.|+||++||+.+.
T Consensus        14 ~~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~   74 (88)
T 2dbk_A           14 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIFD   74 (88)
T ss_dssp             CCCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEEC--SSCEEEECTTTEEECC
T ss_pred             CCCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEe--CCCEEEEehHHeEECC
Confidence            344567899999954  8999999999999999999999999984  5899999999998764

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=75.24  Aligned_cols=58  Identities=21%  Similarity=0.459  Sum_probs=51.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCC-CEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.++ +||.++....++.|+||++|+++.
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            3468899999999999999999999999998766 999999655799999999999754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.33  E-value=5e-13  Score=76.73  Aligned_cols=53  Identities=30%  Similarity=0.742  Sum_probs=44.9

Q ss_pred             hhcccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceeeccC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAIY   63 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~~   63 (173)
                      +.++++..|+||++.+ ..+++++|||. ||..|+..+.      .||+||..+.....+|
T Consensus        13 ~~l~~~~~C~IC~~~~-~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           13 RKLKEAMLCMVCCEEE-INSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             HHHHHHTBCTTTSSSB-CCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCEEEECB
T ss_pred             HcCCCCCEeEEeCccc-CcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhCeEEEE
Confidence            4567788999999999 88999999999 9999998652      6999999887765544

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=1.5e-12  Score=74.54  Aligned_cols=58  Identities=24%  Similarity=0.597  Sum_probs=51.9

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCC-Ccc------CcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT-QRS------GVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~-~~~------G~~p~~~v~~~  113 (173)
                      ...++|+++|.+...++|+|.+||++.|+.+.+++||.++...+ ++.      |+||++|++++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~   71 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED   71 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEEC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEc
Confidence            45678999999999999999999999999998899999997654 788      99999999865

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=7.5e-13  Score=76.51  Aligned_cols=48  Identities=25%  Similarity=0.547  Sum_probs=38.0

Q ss_pred             cCCccccccccccCC-------------Ceee-cCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTS-------------SKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~-------------~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++..|+||++.+...             ++.+ +|||.||..||.+|+..+  .+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCcc
Confidence            566799999988321             4455 599999999999999865  37999998764

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=9.5e-13  Score=75.17  Aligned_cols=57  Identities=30%  Similarity=0.654  Sum_probs=51.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      +..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||.+|++...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   66 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKYITLPA   66 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEE--TTEEEEEESSSEECCS
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHEEEcC
Confidence            45688999999999999999999999999998899999996  5899999999998763

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.33  E-value=1.1e-12  Score=75.94  Aligned_cols=57  Identities=23%  Similarity=0.543  Sum_probs=51.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++..++|+|.+||++.|+...+++||.+..  .|+.|+||++|++++.
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~   73 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLA   73 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHHHEEECC
Confidence            45678999999999999999999999999998899999974  5899999999998653

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.33  E-value=4.7e-13  Score=74.20  Aligned_cols=56  Identities=25%  Similarity=0.579  Sum_probs=49.3

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCC------CccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT------QRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~------~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.+++||.++...+      ++.|+||++|++++
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            467899999999999999999999999998899999986422      78999999998754

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.33  E-value=1.1e-13  Score=78.07  Aligned_cols=56  Identities=21%  Similarity=0.529  Sum_probs=50.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEE-EecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTG-LFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G-~~P~~~v~~~~~  171 (173)
                      .++++++|.++..++|+|++||+|.++...+++||.++..  ++.| +||.+||+.++.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~gG~~P~~yv~~~~~   64 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCS--SSCSCCEETTTCCSCSC
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEEC--CeEEeEEChHHcEECCC
Confidence            4688999999999999999999999999888999999986  7776 999999987653

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.33  E-value=1.2e-12  Score=75.43  Aligned_cols=57  Identities=26%  Similarity=0.444  Sum_probs=50.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCC-EEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~-w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++++++|.++..++|+|.+||+|.|+.+.+++ ||.|+.  .|+.|+||++|++.+
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   66 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQL--NGKEGSFPVDHVEIL   66 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEEC
Confidence            345678999999999999999999999999998777 999995  589999999999865

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.33  E-value=9.6e-13  Score=73.08  Aligned_cols=54  Identities=26%  Similarity=0.557  Sum_probs=48.2

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+ +++||.++. ..|+.|+||++|++..
T Consensus         6 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~-~~g~~G~~Psnyv~~~   59 (67)
T 2b86_A            6 IVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRN-AANRTGYVPSNYVERK   59 (67)
T ss_dssp             EEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEEC-TTSCEEECCCCSEEEC
T ss_pred             EEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEe-CCCCEEEeChHHEeEc
Confidence            46899999999999999999999999998 479999994 3689999999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.33  E-value=3.8e-13  Score=85.19  Aligned_cols=50  Identities=24%  Similarity=0.713  Sum_probs=42.2

Q ss_pred             cccCCccccccccccCCC-------eeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           6 LNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ..+.++|+||++.+ ..+       +.++|||+||..||.+|+...  ..||+||..+..
T Consensus         4 ~~~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   60 (133)
T 4ap4_A            4 GSGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH   60 (133)
T ss_dssp             -CCSCBCTTTCCBH-HHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred             CCCCCCCcccChhh-hCccccccCeEecCCCChhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence            35788999999998 455       899999999999999999864  479999987753

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.32  E-value=1e-12  Score=71.62  Aligned_cols=55  Identities=31%  Similarity=0.619  Sum_probs=47.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+ ++||.++. .+|+.|+||++|+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~-~~g~~G~~P~~yv~~   59 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRL-DSGQLGLYPANYVEA   59 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEEC-SSCCEEEEEGGGEEC
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEe-CCCCEEEecHHHEEE
Confidence            35789999999999999999999999988754 58999995 368999999999875

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.32  E-value=2.1e-12  Score=74.32  Aligned_cols=56  Identities=21%  Similarity=0.487  Sum_probs=50.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcC----CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||+|.|+.+.+    ++||.++  ..++.|+||++|++++
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~--~~g~~G~~P~~yv~~~   72 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE--VNGKKGYVPSNYIRKT   72 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE--SSSCEEEEEGGGEEEC
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEE--eCCCEEEEchHHeEEC
Confidence            446789999999999999999999999999876    8999998  4689999999999865

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.32  E-value=9.5e-13  Score=73.80  Aligned_cols=54  Identities=33%  Similarity=0.568  Sum_probs=49.0

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc---CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC---QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+.+.   +++||.++.  .|+.|+||++|++.+
T Consensus         5 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   61 (69)
T 1wyx_A            5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL--HGRQGIVPGNRLKIL   61 (69)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             EEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEE--CCcEEEechhhEEEC
Confidence            468899999999999999999999999987   789999995  589999999999865

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.32  E-value=1.4e-12  Score=71.53  Aligned_cols=55  Identities=22%  Similarity=0.540  Sum_probs=49.8

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+|+.+.++.+.+++||.++.  .|+.|+||++|++++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEE--CCEEEEEEHHHEEEC
Confidence            4578999999999999999999999999998899999995  589999999998753

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.32  E-value=1.2e-12  Score=72.94  Aligned_cols=57  Identities=26%  Similarity=0.487  Sum_probs=48.9

Q ss_pred             ceeeccCCCCCCCccc-cceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDE-LELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~e-l~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.+...++ |+|.+||++.|+.. .+++||.|+....|+.|+||++|++++
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            4678999999888776 99999999999854 578999999666799999999998754

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.32  E-value=9.5e-13  Score=73.58  Aligned_cols=57  Identities=28%  Similarity=0.619  Sum_probs=51.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.+...++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|++++
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   66 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKD-AKGNEGLVPRTYLEPY   66 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEEC-SSSCEEEEESTTEEEC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEE-CCCCEEEEehHHeEEC
Confidence            45678999999999999999999999999998889999994 4689999999998764

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.7e-12  Score=73.56  Aligned_cols=56  Identities=34%  Similarity=0.582  Sum_probs=50.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE---cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.++..++|+|.+||++.|+.+   .+++||.++.  .++.|+||++|++.+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   66 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF--NGRIGVFPSVLVEEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEE--TTEEEEECSSSEEEC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEE--CCCEEEEChHHEEEC
Confidence            4567899999999999999999999999998   4789999994  589999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=6.6e-13  Score=94.25  Aligned_cols=51  Identities=16%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .+.+.+.||||.++| ..|++++|||+||..||.+|+..++ ..||+|+.++.
T Consensus       204 ~~~~~~~c~i~~~~~-~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~  254 (281)
T 2c2l_A          204 DIPDYLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLT  254 (281)
T ss_dssp             CCCSTTBCTTTCSBC-SSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCC
T ss_pred             CCCcccCCcCcCCHh-cCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCc
Confidence            345789999999999 8999999999999999999998643 35999998774

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.31  E-value=2e-12  Score=70.62  Aligned_cols=55  Identities=29%  Similarity=0.650  Sum_probs=48.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccC-cCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSG-VFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G-~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.| +||++|++++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY--GGKKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEEGGGEEEC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEE--CCeEEEEEChHHcEEC
Confidence            3578999999999999999999999999998899999996  36665 9999998764

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=73.91  Aligned_cols=56  Identities=25%  Similarity=0.396  Sum_probs=49.6

Q ss_pred             CceeeccCCCCCCC-------ccccceecCCEEEEEE-EcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQK-------DDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~-------~~el~~~~g~~v~v~~-~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++.       .++|+|.+||++.|+. ..+++||.++.  .++.|+||++|++.+
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLDHM   70 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES--SSCEEEEETTTEEEC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE--CCcEEEEChHHeEEc
Confidence            44678999999999       8999999999999997 47889999995  689999999999765

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=1.7e-12  Score=72.76  Aligned_cols=56  Identities=39%  Similarity=0.831  Sum_probs=49.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+ +++||.++.  .++.|+||++|+++..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECS--TTCCEEECGGGCEECC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEe--CCcEEEEchHHeEECC
Confidence            3467899999999999999999999999998 789999984  5899999999998653

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.31  E-value=1e-12  Score=73.29  Aligned_cols=56  Identities=21%  Similarity=0.510  Sum_probs=47.9

Q ss_pred             CceeeccCCCCCCCcc-ccceecCCEEEEEEEcC-----CCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDD-ELELRRGSVYTVTERCQ-----DGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~-----~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +..++|+++|.++..+ +|+|.+||++.|+.+.+     ++||.++. ..|+.|+||++|++.
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~-~~G~~G~~PsnyV~~   68 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEI   68 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEE-TTTEEEEECGGGEEE
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEe-CCCCEEEecHHHEEE
Confidence            3457899999999999 99999999999999875     49999996 358999999999864

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=73.75  Aligned_cols=57  Identities=26%  Similarity=0.567  Sum_probs=51.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++..  ++.|+||++|++++.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   64 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLKKAK   64 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEET--TEEEEEEGGGCEECC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEEC--CcEEEEEHHHeEEcc
Confidence            456889999999999999999999999999888999999965  899999999998663

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.31  E-value=1.7e-12  Score=71.92  Aligned_cols=56  Identities=34%  Similarity=0.789  Sum_probs=50.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||.+.|+.+.+++||.++.  .|+.|+||++|++++
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   62 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKEL   62 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCCEEEeehHHEEEC
Confidence            34578999999999999999999999999998899999994  589999999999865

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=74.57  Aligned_cols=57  Identities=26%  Similarity=0.377  Sum_probs=50.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||++.|++. +++||.++....++.|+||++|++++
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~   73 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARV   73 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEc
Confidence            3458899999999999999999999999984 67999999766689999999999764

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.2e-12  Score=74.56  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=51.6

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||.+|++.+
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI--DDEEGWFPASFVRLW   65 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEEC--SSCEEEEEGGGEEES
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEE--CCCEEEechHHEEEc
Confidence            345688999999999999999999999999998899999995  489999999999865

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=72.44  Aligned_cols=56  Identities=30%  Similarity=0.483  Sum_probs=50.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc---CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC---QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.   +++||.++  ..++.|+||++|++.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~--~~g~~G~~P~~yv~~~   65 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL--LHGRQGLAPANRLQIL   65 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEE--SSSCCEEEETTTEEEC
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEE--ECCCEEEEehHHEEEC
Confidence            34578999999999999999999999999987   88999999  4589999999999865

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=73.78  Aligned_cols=58  Identities=22%  Similarity=0.449  Sum_probs=50.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC--CCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR--TQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~--~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++ .++|+|.+||++.|+.+.+++||.++...  .++.|+||++|++++.
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~   69 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN   69 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECC
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECC
Confidence            4567899999998 99999999999999999999999999754  2589999999998663

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.2e-12  Score=74.56  Aligned_cols=58  Identities=26%  Similarity=0.643  Sum_probs=51.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+.+++||.++..  ++.|+||.+|++...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   73 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH--RGIGLFPSNFVTTNL   73 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEET--TEEEEECGGGEESCS
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEEC--CcEEEEehHHEEEcC
Confidence            3456889999999999999999999999999988999999964  789999999998763

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.30  E-value=1.9e-12  Score=73.14  Aligned_cols=57  Identities=32%  Similarity=0.687  Sum_probs=50.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCC-Ccc---CcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT-QRS---GVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~-~~~---G~~p~~~v~~~  113 (173)
                      ...++|+++|.+...++|+|.+||++.| .+.+++||.++...+ |+.   |+||++|+++.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            4568899999999999999999999999 888899999997443 888   99999998754

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=2.6e-12  Score=72.16  Aligned_cols=56  Identities=36%  Similarity=0.723  Sum_probs=50.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.  +++||.++.  .++.|+||++|++.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   64 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   64 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEEC--SSCEEEEEGGGEEEC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEE--CCcEEEechHHeEEC
Confidence            34678999999999999999999999999985  789999994  689999999999765

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.30  E-value=9.4e-13  Score=73.60  Aligned_cols=55  Identities=33%  Similarity=0.774  Sum_probs=50.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKEL   62 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECS--TTCCEEEETTSEEEC
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEE--CCcEEEEchHHEEEC
Confidence            4578999999999999999999999999988899999994  689999999999865

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.9e-12  Score=73.69  Aligned_cols=56  Identities=34%  Similarity=0.700  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+.
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   73 (79)
T 1x69_A           18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELRQ   73 (79)
T ss_dssp             CCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEECC
T ss_pred             eEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEE--CCcEEEechHHEEECC
Confidence            3578999999999999999999999999998999999995  5899999999998653

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=2.2e-12  Score=74.07  Aligned_cols=57  Identities=21%  Similarity=0.392  Sum_probs=51.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||.+|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL--NGLRGWFPAKFVEVLD   63 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEEC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHEEECC
Confidence            34678999999999999999999999999998999999995  4899999999998653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.30  E-value=1.1e-12  Score=72.27  Aligned_cols=54  Identities=20%  Similarity=0.510  Sum_probs=44.0

Q ss_pred             cccCCccccccccccCCCeee--cCCCC-CChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVL--PCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~--~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      .+++..|+||++.. ..+.++  +|||. ||..|+.++...+  ..||+||..+...+.+
T Consensus         5 ~~~~~~C~IC~~~~-~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            5 LNAIEPCVICQGRP-KNGCIVHGKTGHLMACFTCAKKLKKRN--KPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             CGGGSCCTTTSSSC-SCEEEEETTEEEEEECHHHHHHHHHTT--CCCTTTCCCCCEEEEE
T ss_pred             CCCcCCCCcCCCCC-CCEEEECCCCCChhhHHHHHHHHHHcC--CcCCCcCcchhceEee
Confidence            35677999999988 677777  99999 8999999998753  4799999988655443

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.29  E-value=1.5e-12  Score=73.80  Aligned_cols=57  Identities=32%  Similarity=0.676  Sum_probs=51.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.+...++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGHSGFFPINYVEILV   63 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEE--TTEEEEEESSSEEESS
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEEcc
Confidence            45688999999999999999999999999998899999995  5899999999998763

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.29  E-value=1.1e-12  Score=71.47  Aligned_cols=54  Identities=19%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++++++|.++..++|+|.+||++.|+.. +++||.++. ..|+.|+||++|++.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~-~~g~~G~~P~~yv~~~   56 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRN-ASGDSGFVPNNILDIM   56 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEEC-TTSCEEEEEGGGEEEE
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEE-CCCCEEEEEHHHeEEc
Confidence            46789999999999999999999999998 889999984 4689999999998765

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.29  E-value=2.8e-12  Score=72.68  Aligned_cols=56  Identities=36%  Similarity=0.732  Sum_probs=50.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.  +++||.|+.  .|+.|+||++|++.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   66 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   66 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEE--CCeEEEEchHHEEEC
Confidence            34678999999999999999999999999985  889999995  589999999999765

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=5e-12  Score=70.57  Aligned_cols=55  Identities=25%  Similarity=0.443  Sum_probs=49.2

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+. ++||.++. ..++.|+||++|++.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~-~~g~~G~~P~~yv~~~   62 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRS-RSGQAGYVPCNILGEA   62 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEEC-TTSCEEEEETTTCCBC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEE-CCCCEEEEEHHHeEEC
Confidence            3578999999999999999999999999984 89999995 4689999999999865

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.29  E-value=2.5e-12  Score=72.86  Aligned_cols=56  Identities=23%  Similarity=0.568  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++++.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   61 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLD   61 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEE--CCcEEEEehHHeEECC
Confidence            4578999999999999999999999999998899999995  4899999999998763

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.29  E-value=3.2e-12  Score=75.56  Aligned_cols=59  Identities=24%  Similarity=0.549  Sum_probs=52.1

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+..++++++|.++..++|+|.+||+|.|+.+  .+++||.++. ..++.|+||.+|++.+.
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~~   76 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVLS   76 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEEC-TTCCEEEEEGGGEEEEE
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEe-CCCCEEEEchHHEEECC
Confidence            35568999999999999999999999999998  6789999983 46899999999998764

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-12  Score=72.62  Aligned_cols=57  Identities=25%  Similarity=0.488  Sum_probs=50.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+ ++||.++.. .++.|+||++|++...
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK-VGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECT-TCCEEEEETTTSCCSC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeC-CCCEEEEEhHHEEECC
Confidence            45789999999999999999999999999874 899999953 4899999999998763

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.29  E-value=1.2e-12  Score=73.92  Aligned_cols=56  Identities=30%  Similarity=0.609  Sum_probs=49.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+ .+++||.++.  .++.|+||++|++.+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   66 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEE--CCcEEEecHHHEEEC
Confidence            4567899999999999999999999998874 6789999994  589999999999865

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=70.95  Aligned_cols=57  Identities=21%  Similarity=0.450  Sum_probs=50.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+ +++||.++. ..++.|+||++|++++.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~-~~g~~G~~P~~yv~~~~   63 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKN-EAGRSGYIPSNILEPLS   63 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEEC-TTSCEEEEEGGGEECCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEE-CCCCEEEEEhHHcEECC
Confidence            3457899999999999999999999999998 489999995 57899999999998753

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2.6e-12  Score=74.98  Aligned_cols=57  Identities=30%  Similarity=0.512  Sum_probs=51.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++..++|+|.+||+|.|+.+  .+++||.++.  .++.|+||++||+++.
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~   66 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA--GGRSGLFPADIVQPAA   66 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEES--SSCEEEEETTSEEECC
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEE--CCEEEEechHHeEECC
Confidence            3457899999999999999999999999987  8889999995  5899999999998764

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.8e-12  Score=71.52  Aligned_cols=57  Identities=19%  Similarity=0.446  Sum_probs=50.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++++++|.++..++|+|.+||++.|+...+ ++||.++.. .++.|+||++|++..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~-~g~~G~~P~~yv~~~   64 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLRVT   64 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS-SSCEEEEEGGGEEEC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC-CCCEEEEEhHHeEEc
Confidence            567899999999999999999999999999764 569999954 689999999999765

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.28  E-value=2.3e-12  Score=93.94  Aligned_cols=52  Identities=25%  Similarity=0.584  Sum_probs=43.8

Q ss_pred             cccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      .+....|+||.+.+ ..++.++|||.||..|+..|+.. ....||+||..+...
T Consensus       329 ~~~~~~C~ICle~~-~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          329 GSTFQLCKICAEND-KDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGT  380 (389)
T ss_dssp             TTSSSBCTTTSSSB-CCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred             cCCCCCCCccCcCC-CCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence            34457999999999 78999999999999999999874 235799999887654

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=2.4e-12  Score=86.81  Aligned_cols=56  Identities=29%  Similarity=0.618  Sum_probs=49.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEE-----cCCCCeeEEEeCC--------CCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~-----~~~~~w~~~~~~~--------~g~~G~~P~~~v~~~  169 (173)
                      .++++|+|.+...++|+|++||+|.|+.     ..++|||.|+...        .|+.||||.+||+.+
T Consensus       144 ~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            4789999999999999999999999999     6789999999632        288999999999875

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.5e-12  Score=72.77  Aligned_cols=57  Identities=26%  Similarity=0.582  Sum_probs=49.7

Q ss_pred             CCceeeccCCCCCCC-------ccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQK-------DDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~-------~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++|+++|.++.       .++|+|.+||++.|+.+.+ ++||.++.  .++.|+||++|++++
T Consensus         6 ~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   70 (76)
T 2csi_A            6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL--NGQKGLVPSNFLEEV   70 (76)
T ss_dssp             CSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE--TTEEEEEEGGGCCBC
T ss_pred             CccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE--CCcEEEEehHHEEEC
Confidence            345678999999998       8999999999999999865 48999996  589999999999865

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=74.96  Aligned_cols=55  Identities=35%  Similarity=0.763  Sum_probs=50.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++++++|.++..++|+|.+||+|.|+.+.+++||.++.  .++.|+||.+|++++.
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~   73 (88)
T 2cub_A           19 PAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYVTEEG   73 (88)
T ss_dssp             EEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE--CCcEEEEehHHEEECC
Confidence            478999999999999999999999999999999999996  5899999999998763

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=1.9e-12  Score=76.84  Aligned_cols=57  Identities=32%  Similarity=0.697  Sum_probs=50.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      +..++++|+|.++..++|+|.+||+|.|+.+.  +++||.++.  .|+.|+||.+|++.+.
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~   63 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEECC
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEE--CCCEEEechHHeEEcC
Confidence            45678999999999999999999999999875  789999995  4899999999998763

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=3.2e-12  Score=76.24  Aligned_cols=58  Identities=29%  Similarity=0.528  Sum_probs=51.2

Q ss_pred             CceeeccCCCCCCC------ccccceecCCEEEEE-EEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQK------DDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~------~~el~~~~g~~v~v~-~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+|+|.++.      .++|+|.+||+|.|+ ...+++||.++. ..|+.|+||++||+.+.
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~-~~g~~G~~Psnyv~~~~   81 (96)
T 1wie_A           17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEE-TTCCBCBCCTTSEECCC
T ss_pred             CcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEE-CCCCEEEEchHHEEEcC
Confidence            45678999999988      899999999999999 778889999995 36899999999998763

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.4e-12  Score=73.44  Aligned_cols=57  Identities=30%  Similarity=0.676  Sum_probs=51.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.+...++|+|.+||++.|+.+.+++||.++.  .++.|+||.+|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   63 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEELP   63 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEES--SSCEEEECSTTEEEES
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEE--CCCEEEEEhHHeEECC
Confidence            34678999999999999999999999999998899999994  5899999999998653

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.27  E-value=8e-12  Score=73.07  Aligned_cols=56  Identities=30%  Similarity=0.616  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+. ++||.++....|+.|+||++|++.+
T Consensus        26 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           26 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             EEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             cEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEc
Confidence            4678999999999999999999999999987 6999999745799999999999765

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.27  E-value=3.4e-12  Score=71.73  Aligned_cols=54  Identities=28%  Similarity=0.461  Sum_probs=44.3

Q ss_pred             eccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          60 IAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        60 ~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+.+++.++..++|+|.+||+|.|+.+ .+++||.|+....++.|+||++|+++.
T Consensus        14 ~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           14 YGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             SSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            344455555566999999999999998 678999998667899999999999764

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=7.8e-12  Score=72.90  Aligned_cols=56  Identities=27%  Similarity=0.577  Sum_probs=50.8

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++.
T Consensus        20 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-RNGHEGYVPSSYLVEK   75 (85)
T ss_dssp             CEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEEC-SSSCEEEEETTTCEEC
T ss_pred             eEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEE-CCCCEEEEehHHeEEc
Confidence            4578999999999999999999999999998889999984 5689999999999865

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.27  E-value=4.6e-12  Score=71.54  Aligned_cols=56  Identities=20%  Similarity=0.513  Sum_probs=49.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+ +++||.++. ..++.|+||++|++...
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~-~~g~~G~~P~~yv~~~~   63 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRN-SMNKTGFVPSNYVERKN   63 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEEC-TTSCEEEECTTSCEECC
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEE-CCCCEEEEEhhHEEEcC
Confidence            357899999999999999999999999997 679999995 36899999999998653

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.26  E-value=1.1e-11  Score=68.10  Aligned_cols=44  Identities=25%  Similarity=0.643  Sum_probs=39.6

Q ss_pred             CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         125 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       125 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .+++|+|++|+++.++...+++||.++..  |+.|+||.+||+.++
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   45 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLD   45 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEECS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEeHHHEEEcC
Confidence            35789999999999999988999999865  999999999999864

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=5.7e-12  Score=72.66  Aligned_cols=56  Identities=29%  Similarity=0.604  Sum_probs=50.3

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcC--CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||+|.|+.+.+  ++||.++.  .++.|+||.+|++..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   74 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL--RGQTGIFPANYVTMN   74 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE--TTEEEEEEGGGCCBC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE--CCEEEEEchhHeEEc
Confidence            446789999999999999999999999999875  89999996  589999999999865

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.26  E-value=1.6e-12  Score=76.76  Aligned_cols=57  Identities=32%  Similarity=0.736  Sum_probs=51.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+...+++||.|+.  .|+.|+||++||+.+.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~--~g~~G~fPsnyV~~~~   74 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELS   74 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEE--TTEECCBCSSSEECCS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEE--CCeEEEeehHHEEECC
Confidence            34678999999999999999999999999988899999995  5899999999998764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.26  E-value=2.2e-12  Score=70.78  Aligned_cols=53  Identities=25%  Similarity=0.531  Sum_probs=42.9

Q ss_pred             ccCCccccccccccCCCeee--cCCCC-CChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           7 NDLLECSVCLDRLDTSSKVL--PCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~--~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      +....|+||++.. ..+.++  +|||. ||..|+.++...+  ..||+||..+...+.+
T Consensus         5 ~~~~~C~IC~~~~-~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            5 NLLKPCSLCEKRP-RDGNIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQLVIKV   60 (63)
T ss_dssp             GGGSBCTTTSSSB-SCEEEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCCEEEEE
T ss_pred             CcCCCCcccCCcC-CCeEEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhhceEEE
Confidence            4567899999988 677777  99998 9999999988654  4799999988655443

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.26  E-value=5e-12  Score=69.53  Aligned_cols=55  Identities=20%  Similarity=0.523  Sum_probs=48.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+. +.+||.++.  .|+.|+||++|++++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~~   61 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPV   61 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEE--TTEEEEEEGGGEEES
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEE--CCCeEEEehHHeEEC
Confidence            4578999999999999999999999999954 556999996  588999999998764

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=1e-11  Score=70.46  Aligned_cols=55  Identities=27%  Similarity=0.519  Sum_probs=49.1

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+ +++||.++.  .++.|+||.+|++.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~--~g~~G~~P~~yv~~~~   65 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEV--HGGRGWFPKSYVKIIP   65 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEES--TTCCCEEEGGGEEECC
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEE--CCcEEEEchHHeEECC
Confidence            457899999999999999999999999998 478999995  5899999999998653

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=6.5e-12  Score=71.88  Aligned_cols=57  Identities=25%  Similarity=0.564  Sum_probs=50.4

Q ss_pred             ceeeccCCCCCC-CccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQ-KDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~-~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++ ..++|+|.+||++.|+.+. +++||.++. ..|+.|+||.+|++.+.
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~-~~g~~G~~P~~yv~~~~   68 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKN-NKGEQGLVPTDYVEILP   68 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEEC-TTCCEEEEETTTEEEEC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEE-CCCCEEEeehHHeEECC
Confidence            457899999998 9999999999999999985 789999994 46899999999998653

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.3e-12  Score=89.92  Aligned_cols=52  Identities=17%  Similarity=0.431  Sum_probs=44.0

Q ss_pred             hcccCCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCC--CCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPE--CPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~--Cr~~i~   57 (173)
                      ....++.||||.+.| ..|+.. .|||+||+.||.+|+..+....||+  |+..+.
T Consensus       177 ~~~~el~CPIcl~~f-~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          177 GGKIELTCPITCKPY-EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             SSBCCSBCTTTSSBC-SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             CCceeeECcCccCcc-cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            456889999999999 777764 9999999999999998655578999  997553

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=4.7e-12  Score=73.17  Aligned_cols=58  Identities=22%  Similarity=0.360  Sum_probs=50.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEE--cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~--~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ....++|+++|.++..++|+|.+||++.|+.+  .+++||.++.  .++.|+||.+|++.+.
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   75 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER--GNQKGKVPITYLELLN   75 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEE--CCCEEEEehHHEEECC
Confidence            34568899999999999999999999999998  3689999994  5899999999998653

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=2.4e-12  Score=73.54  Aligned_cols=56  Identities=36%  Similarity=0.635  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A           11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEECC
T ss_pred             EEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEECC
Confidence            4578999999999999999999999999998899999995  5899999999998653

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.25  E-value=4.4e-12  Score=73.18  Aligned_cols=58  Identities=21%  Similarity=0.488  Sum_probs=51.3

Q ss_pred             CCceeeccCCCCCCCcc-ccceecCCEEEEEEEcCC-----CEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDD-ELELRRGSVYTVTERCQD-----GWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~~-----~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..++|+++|.++..+ +|+|.+||++.|+.+.++     +||.++. ..|+.|+||++|++.+
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~   76 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEII   76 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEC-TTSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEe-CCCCeEEEEHHHeEEc
Confidence            34568999999999999 999999999999998776     8999995 3689999999999765

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.25  E-value=2.2e-12  Score=72.27  Aligned_cols=56  Identities=34%  Similarity=0.634  Sum_probs=49.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.++..++|+|.+||++.|+.+.+++||.++.. .+..|+||++|++.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~~P~~yv~~~   63 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYG-TRIQQYFPSNYVEDI   63 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEET-TEEEEEECGGGEEEC
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEchHHcEEC
Confidence            45789999999999999999999999999888999999964 445599999999865

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=6.7e-12  Score=71.96  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=42.5

Q ss_pred             ccCCcccccccccc-CCCeeecCC-----CCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           7 NDLLECSVCLDRLD-TSSKVLPCQ-----HTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         7 ~~~~~C~iC~~~~~-~~~~~~~Cg-----h~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+...|+||++.+. ..+.+++|.     |.||..||.+|+..++...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            45678999998774 356788996     99999999999997665789999987643

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=9.2e-12  Score=69.30  Aligned_cols=50  Identities=34%  Similarity=0.837  Sum_probs=42.0

Q ss_pred             ccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceeeccC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAIY   63 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~~   63 (173)
                      .+...|+||++.. ..+++++|||. ||..|+...      ..||+||..+.....++
T Consensus        13 ~~~~~C~IC~~~~-~~~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           13 ENSKDCVVCQNGT-VNWVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CCSSCCSSSSSSC-CCCEETTTTBCCSCTTHHHHC------SSCTTTCCCCCCEECCC
T ss_pred             CCCCCCCCcCcCC-CCEEEECCCChhhhHHHHhcC------CCCCCCCcchhceEEee
Confidence            4678999999988 88999999999 999999842      47999999887665554

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.24  E-value=3.9e-12  Score=77.11  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=49.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v~~~~  114 (173)
                      .++++|+|.++..++|+|.+||++.|+.+.+++||.++.+. .|+.|+||++||+...
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~   64 (108)
T 2rqv_A            7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIID   64 (108)
T ss_dssp             CEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCC
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEec
Confidence            47899999999999999999999999998899999999642 2445999999998764

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.24  E-value=8e-12  Score=73.98  Aligned_cols=60  Identities=22%  Similarity=0.498  Sum_probs=52.6

Q ss_pred             CCCceeeccCCCCCCCcc-ccceecCCEEEEEEEcCC-----CEEEEEeCCCCccCcCCCccccCCc
Q psy9669          54 TFVPEYIAIYPYKPQKDD-ELELRRGSVYTVTERCQD-----GWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~~-----~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .....++++++|.+...+ +|+|.+||++.|+.+.+.     +||.++. ..|+.|+||++|++.+.
T Consensus        12 ~~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~-~~g~~G~~P~~yv~~~~   77 (92)
T 1jqq_A           12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEIIK   77 (92)
T ss_dssp             TTCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEE-TTSCEEEEEGGGEEECC
T ss_pred             CcCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEe-CCCCEEEEehHHeEECC
Confidence            345678999999999999 999999999999998776     9999996 46899999999998763

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.1e-12  Score=72.43  Aligned_cols=57  Identities=33%  Similarity=0.623  Sum_probs=50.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.  +++||.++.  .++.|+||.+|++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   65 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYVEEEG   65 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEE--TTEEEEECSSSEEECC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEE--CCeEEEeehHHEEEcC
Confidence            34678999999999999999999999999987  449999995  5899999999998753

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.24  E-value=8.9e-12  Score=72.79  Aligned_cols=53  Identities=26%  Similarity=0.570  Sum_probs=47.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      .++|+++|.++..++|+|.+||++.|+.. +++||.++. ..|+.|+||++|+++
T Consensus        33 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~-~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           33 IVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRN-AANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEEC-TTSCEEEEEGGGBCC
T ss_pred             EEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEE-CCCCEEEeehHHEEe
Confidence            47899999999999999999999999997 679999994 368999999999874

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.24  E-value=1.3e-11  Score=75.39  Aligned_cols=59  Identities=29%  Similarity=0.733  Sum_probs=53.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.+...++|+|.+||++.|+.+.+++||.++....++.|+||++|+++..
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD   85 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC
Confidence            45688999999999999999999999999998899999996457899999999998753

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.24  E-value=1.2e-11  Score=81.84  Aligned_cols=54  Identities=20%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.++..++|+|++||++.|+.+.+++||.++.. +|+.|+||++||+.
T Consensus       120 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          120 VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQI  173 (174)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TCCEEEEEGGGEEE
T ss_pred             EEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEEC-CCCEEEEChHHEEe
Confidence            3678999999999999999999999999989999999963 59999999999974

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=5.1e-12  Score=75.12  Aligned_cols=58  Identities=43%  Similarity=0.723  Sum_probs=51.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc--C--CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--Q--DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~--~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||+|.|+.+.  +  ++||.++....++.|+||.+||+++
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   77 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA   77 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEEC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEc
Confidence            45688999999999999999999999999873  4  8999999656799999999999865

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.23  E-value=1.1e-11  Score=76.80  Aligned_cols=57  Identities=25%  Similarity=0.534  Sum_probs=50.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEe-CCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTS-QRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~-~~~~~~G~~p~~~v~~~~  114 (173)
                      .++++|+|.++..++|+|.+||++.|+.+.+++||.++. ...|+.|+||++|++...
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~   62 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID   62 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEEC
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEcc
Confidence            468899999999999999999999999998999999986 346889999999998653

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=9.2e-12  Score=74.38  Aligned_cols=57  Identities=26%  Similarity=0.632  Sum_probs=49.4

Q ss_pred             CceeeccCCCCCC--------CccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQ--------KDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~--------~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.++        ..++|+|.+||+|.|+.+ ..++||.++.  .|+.|+||++||+.+.
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~   82 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNMVSEIQ   82 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE--TTEEEEEETTTSEECC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE--CCcEEEEehHHeEECC
Confidence            4567899999998        788999999999999965 5577999996  4899999999998764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.23  E-value=6.1e-12  Score=76.02  Aligned_cols=47  Identities=17%  Similarity=0.369  Sum_probs=38.1

Q ss_pred             cCCccccccccccCC-----------------CeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           8 DLLECSVCLDRLDTS-----------------SKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~-----------------~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ++..|+||++.+...                 .+.++|+|.||..||.+|+..+  .+||+||..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--CcCcCCCCcc
Confidence            456899999988422                 3567999999999999999864  5799999765

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.22  E-value=2.3e-11  Score=80.53  Aligned_cols=57  Identities=19%  Similarity=0.514  Sum_probs=51.1

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||++.|+.. +++||.++...+|+.|+||.+||++.+
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc
Confidence            357899999999999999999999999998 679999998546999999999999754

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.21  E-value=2.7e-12  Score=78.87  Aligned_cols=59  Identities=31%  Similarity=0.577  Sum_probs=50.9

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEE-----EcCCCEEEEEeCCC--------CccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTE-----RCQDGWFKGTSQRT--------QRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~-----~~~~~w~~~~~~~~--------~~~G~~p~~~v~~~  113 (173)
                      ....++|+++|.++..++|+|.+||+|.|+.     ..+++||.|+...+        |+.|+||++|++++
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4456899999999999999999999999999     67889999985322        78999999998754

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.21  E-value=9.9e-12  Score=73.29  Aligned_cols=56  Identities=32%  Similarity=0.616  Sum_probs=49.9

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+++|.++..++|+|.+||++.|+.. +++||.++....|+.|+||++|+++..
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~   60 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD   60 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECC
Confidence            46889999999999999999999999998 578999997557899999999998753

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.21  E-value=3.7e-12  Score=75.01  Aligned_cols=59  Identities=36%  Similarity=0.709  Sum_probs=49.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE---------------cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER---------------CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~---------------~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+|+|.++..++|+|.+||+|.|+.+               .+.+||.|+....|+.|+||++||+.+.
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~   84 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLG   84 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEec
Confidence            3457899999999999999999999999842               2238999997667999999999998653

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.21  E-value=1e-12  Score=75.27  Aligned_cols=55  Identities=24%  Similarity=0.506  Sum_probs=49.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++|+++|.+...++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCC-SSSCCCCCBSTTCCC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEE-CCCCEEEEehHHEEE
Confidence            3478999999999999999999999999988889999985 468999999999975

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.21  E-value=1e-11  Score=70.55  Aligned_cols=57  Identities=30%  Similarity=0.677  Sum_probs=49.5

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||.+.|+... ++||.|+... .|+.|+||++|++..
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~   68 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK   68 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEEC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEe
Confidence            34578999999999999999999999999985 8899999633 489999999999754

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.21  E-value=6.4e-12  Score=71.33  Aligned_cols=55  Identities=33%  Similarity=0.653  Sum_probs=48.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+. +.+||.++.  .|+.|+||++|++..
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMK   65 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEE--CCCEEEEehHhEEEc
Confidence            3578999999999999999999999999987 568999995  589999999998754

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.20  E-value=1.8e-11  Score=70.24  Aligned_cols=54  Identities=28%  Similarity=0.487  Sum_probs=43.6

Q ss_pred             eccCCCCCC---CccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          60 IAIYPYKPQ---KDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        60 ~~~~~~~~~---~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+.+++.++   ..++|+|.+||+|.|+.+. +++||.|+....|+.|+||++||++.
T Consensus        19 ~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             SCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             EECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            344455543   2589999999999999984 89999999656799999999999764

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.20  E-value=3.5e-12  Score=74.08  Aligned_cols=57  Identities=33%  Similarity=0.736  Sum_probs=48.9

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEE---------------cCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTER---------------CQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~---------------~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++++++|.++..++|+|.+||+|.|+.+               .+.+||.|+....|+.|+||++|++.+.
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~   78 (83)
T 3i5r_A            7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   78 (83)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECC
Confidence            56799999999999999999999999854               2348999987666999999999998653

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.20  E-value=2.5e-11  Score=86.30  Aligned_cols=55  Identities=31%  Similarity=0.687  Sum_probs=50.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|.+||++.++...++|||.|+..  |+.|+||++||+.++
T Consensus         4 ~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~   58 (283)
T 3jv3_A            4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVS--GQVGLFPSNYVKLTT   58 (283)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEET--TEEEEEEGGGEEEGG
T ss_pred             EEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEEC--CCCCcCCCccccccC
Confidence            3688999999999999999999999999988999999976  999999999999764

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=74.87  Aligned_cols=57  Identities=25%  Similarity=0.588  Sum_probs=50.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v~~~  113 (173)
                      ...++|+|+|.++..++|+|.+||+|.|+.+. ++||.|+... .|+.|+||++||+..
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEe
Confidence            45678999999999999999999999999986 6999999744 589999999999865

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.19  E-value=9.8e-12  Score=69.79  Aligned_cols=54  Identities=28%  Similarity=0.676  Sum_probs=46.8

Q ss_pred             eeeccCCCCCCCcc--ccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDD--ELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~--el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..+  +|+|.+||++.|+.. +++||.++. ..|+.|+||++|++.+
T Consensus         7 ~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~-~~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            7 KAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARR-ANGETGIIPSNYVQLI   62 (70)
T ss_dssp             EEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEEC-TTSCEEEEEGGGEEEE
T ss_pred             EEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEE-CCCCEEEEehHHEEEC
Confidence            46899999998655  999999999999886 789999984 3789999999999865

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.19  E-value=7.4e-12  Score=90.69  Aligned_cols=52  Identities=27%  Similarity=0.742  Sum_probs=44.2

Q ss_pred             hhcccCCccccccccccCCCeeecCCCC-CChhhHHHHHhcccccCCCCCCCCCceeecc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYIAI   62 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~-fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~~   62 (173)
                      +.++++..|+||++.+ ..+++++|||. ||..|+..+      ..||+||..+.....+
T Consensus       290 ~~l~~~~~C~IC~~~~-~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~~~i  342 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKE-VSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKGTVRT  342 (345)
T ss_dssp             HHHHTTCBCTTTSSSB-CCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCEEEEC
T ss_pred             HhCcCCCCCCccCCcC-CceEEcCCCChhHhHHHHhcC------CcCCCCCCCccCeEEe
Confidence            4467889999999999 89999999999 999999977      3699999988665443

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.18  E-value=1.6e-11  Score=67.37  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=43.8

Q ss_pred             CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc-------ceecccCCC
Q psy9669          69 KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK-------FRCIVPYPP  123 (173)
Q Consensus        69 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~-------~~~~~~~~~  123 (173)
                      ..++|+|.+||++.|+.+.+++||.++.  .|+.|+||++|++.+.       ++++|+|.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~~~~~~~alydy~a   61 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSGTGKELVLALYDYQE   61 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECSCSTTSCEEEECSCBCC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEcCCCCCCccEEEeccccC
Confidence            4578999999999999998899999984  5899999999998653       345566654

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.18  E-value=9.7e-12  Score=74.47  Aligned_cols=56  Identities=32%  Similarity=0.696  Sum_probs=50.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++++|.++..++|+|.+||++.|+.+.+++||.++.  .++.|+||++|++.+
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   89 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--SSCBCCEETTSEEEC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEE--CCcEEEEehHHeEEc
Confidence            45678999999999999999999999999998889999994  689999999999765

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.18  E-value=4.7e-12  Score=71.32  Aligned_cols=56  Identities=29%  Similarity=0.599  Sum_probs=49.2

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccC-cCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSG-VFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G-~~p~~~v~~~~  114 (173)
                      ..++|+++|.++..++|+|.+||++.|+.+.+++||.++.  .++.| +||++|++.+.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~gG~~P~~yv~~~~   63 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVEEMV   63 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBC--SSSCSCCEETTTCCSCS
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCeEEeEEChHHcEECC
Confidence            4568899999999999999999999999998899999995  46665 99999998763

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.18  E-value=2.8e-11  Score=77.14  Aligned_cols=57  Identities=30%  Similarity=0.583  Sum_probs=51.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      +..++|+++|.++..++|+|.+||++.|+.+. +++||.|+.  .|+.|+||++|++...
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~   62 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEI--YGRIGWFPSNYVEEDY   62 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEE--TTEEEEEETTSEEESS
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEE--CCeeEEechHHEEEcc
Confidence            55688999999999999999999999999984 889999995  5899999999998753

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.17  E-value=1.1e-11  Score=70.81  Aligned_cols=46  Identities=24%  Similarity=0.601  Sum_probs=41.1

Q ss_pred             CCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       123 ~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++..++|+|++|++|.|+.+.+++||.++..  |+.||||.+||+.++
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~   47 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKLD   47 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEET--TEEECCCGGGEEECC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEEeeEEEEcC
Confidence            3567899999999999999988999999976  999999999998864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.16  E-value=1.1e-11  Score=85.56  Aligned_cols=57  Identities=19%  Similarity=0.578  Sum_probs=51.6

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.+...++|+|++||+|.|+.+.+++||.++.. +|+.|+||.+||+.++
T Consensus       137 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~  193 (230)
T 2dvj_A          137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKYR  193 (230)
T ss_dssp             CCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECT-TSCEEEEEGGGSCCCC
T ss_pred             eeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeC-CCCEEEEehHHeEEcC
Confidence            34789999999999999999999999999989999999954 5999999999999875

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.3e-11  Score=68.25  Aligned_cols=51  Identities=24%  Similarity=0.585  Sum_probs=41.4

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +....|+||++.+........|+|.||..||.+|++.+...+||+|+....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            345789999999854455558999999999999998765568999997653

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.15  E-value=5.3e-11  Score=67.38  Aligned_cols=52  Identities=19%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCC--CCcEEEecCCCe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQR--TGRTGLFPASFM  166 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~--~g~~G~~P~~~v  166 (173)
                      ..++++|.+....||+|++|+++.+++..  +++||.++...  .+++|+||.+|+
T Consensus        20 ~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           20 TVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            57889999999999999999999999876  47899999742  237899999998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.14  E-value=5.9e-12  Score=79.64  Aligned_cols=49  Identities=24%  Similarity=0.757  Sum_probs=41.1

Q ss_pred             ccCCccccccccccCCC-------eeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           7 NDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~-------~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ++...|+||++.+ ..+       +.++|||.||..||.+|+...  ..||+||..+..
T Consensus        70 ~~~~~C~iC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBH-HHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCcc-ccccccCcceEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence            4678999999988 343       888999999999999999864  479999987753

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.14  E-value=2.3e-11  Score=81.67  Aligned_cols=55  Identities=33%  Similarity=0.681  Sum_probs=50.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|.+||+|.|+...++|||.++..  |+.||||.+||+.++
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   67 (193)
T 1ng2_A           13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIPASFLEPLD   67 (193)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEEC--CCCCCCCGGGCCCSS
T ss_pred             EEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEEC--CeeeEechheEEeec
Confidence            4688999999999999999999999999988999999965  999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.13  E-value=3.5e-11  Score=71.31  Aligned_cols=57  Identities=26%  Similarity=0.489  Sum_probs=49.1

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC----CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+++|.+...++|+|.+||+|.|+.+.+    ++||.++.. .++.|+||.+||+.+.
T Consensus        18 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~-~~~~G~~P~~yv~~~~   78 (93)
T 1wxu_A           18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD-GQTTGLIPANYVKILG   78 (93)
T ss_dssp             BCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESS-SSSCEEECSTTEEECC
T ss_pred             EEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeC-CcCEEEEehHHEEEcC
Confidence            45789999999999999999999999999876    599999843 3349999999998764

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.13  E-value=9e-12  Score=74.06  Aligned_cols=48  Identities=29%  Similarity=0.788  Sum_probs=37.3

Q ss_pred             ccCCccccccccccCCCeee---cCCCCCChhhHHHHHhcc------cccCCCC--CCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSH------KELRCPE--CPTF   55 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~---~Cgh~fc~~Cl~~~~~~~------~~~~CP~--Cr~~   55 (173)
                      ++.++|+||++.+ ..+..+   +|||.||..|+.+++...      ...+||.  |+..
T Consensus         3 ~~~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCccc-ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3578999999988 444332   699999999999998742      2368999  9876

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.13  E-value=5.1e-11  Score=78.78  Aligned_cols=57  Identities=14%  Similarity=0.509  Sum_probs=51.2

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ....++|+++|.++..++|+|.+||++.|+++.+++||.|+. ..|+.|+||++|++.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEC-TTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEE-CCCCEEEEChHHEEe
Confidence            455688999999999999999999999999998999999994 468999999999863

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.12  E-value=8.4e-11  Score=78.26  Aligned_cols=57  Identities=25%  Similarity=0.558  Sum_probs=49.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v~~~~~  171 (173)
                      .++++|+|.+..+++|+|++||++.+++..+ +||.|+... .|+.|+||++||+..+.
T Consensus        19 ~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           19 HGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             EEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            4789999999999999999999999998865 599999832 27899999999998653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=85.21  Aligned_cols=56  Identities=32%  Similarity=0.731  Sum_probs=51.7

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++..++|+|++||+|.++.+.++|||.|+..  |+.|+||++||+.++
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~  230 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILK  230 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEET--TEEEEEEGGGEEEEE
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEEC--CcEEEechHHeEEcC
Confidence            45789999999999999999999999999988999999976  999999999999864

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.10  E-value=2.1e-10  Score=82.23  Aligned_cols=56  Identities=20%  Similarity=0.589  Sum_probs=51.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|++||+|.++.+.+++||.++.. +|+.|+||.+||+.++
T Consensus       136 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~  191 (304)
T 2eyz_A          136 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKYR  191 (304)
T ss_dssp             EEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECT-TSCEEEEESTTEEECC
T ss_pred             eEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeC-CCceeccchhcccccc
Confidence            4789999999999999999999999999988999999954 5999999999999864

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.08  E-value=1.5e-10  Score=88.32  Aligned_cols=57  Identities=30%  Similarity=0.476  Sum_probs=52.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++.++||+|++||+|.+++..++|||.|+...+|+.|+||++||+++.
T Consensus       444 ~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~  500 (526)
T 2de0_X          444 NQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI  500 (526)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             ceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcc
Confidence            468999999999999999999999999988999999997557999999999999864

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.08  E-value=2.1e-11  Score=82.22  Aligned_cols=58  Identities=29%  Similarity=0.546  Sum_probs=50.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEE-----EcCCCEEEEEeCC--------CCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTE-----RCQDGWFKGTSQR--------TQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~-----~~~~~w~~~~~~~--------~~~~G~~p~~~v~~~  113 (173)
                      +..++++|+|.++..++|+|.+||+|.|+.     ..+++||.|+...        .|+.||||.+||+.+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            346889999999999999999999999999     6788999999531        388999999998753

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.07  E-value=2.1e-10  Score=88.34  Aligned_cols=58  Identities=22%  Similarity=0.543  Sum_probs=52.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++|+|.++..++|+|++||++.|+...+++||.++...+|+.|+||.+||++.+.
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~  144 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS  144 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccccc
Confidence            4789999999999999999999999999988999999985459999999999998643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.07  E-value=1.6e-10  Score=87.25  Aligned_cols=56  Identities=23%  Similarity=0.578  Sum_probs=51.3

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|++||++.+++..+++||.++...+|+.|+||++||++.+
T Consensus         5 ~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            57899999999999999999999999988899999998545999999999999864

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.04  E-value=2.1e-10  Score=67.09  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             ceecccC--CCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         115 FRCIVPY--PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       115 ~~~~~~~--~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      +.+++++  ...+..+|+|++||++.|+...+++||.++.. .|+.|+||.+|+...|.
T Consensus        42 ~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs-~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           42 TKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             CBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGSCC---
T ss_pred             EEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECC-CCCCCceeHHHhccccc
Confidence            4555566  45567899999999999999998999999997 89999999999987653

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.03  E-value=2.6e-11  Score=74.30  Aligned_cols=46  Identities=17%  Similarity=0.424  Sum_probs=0.4

Q ss_pred             CCccccccccccC-----------------CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           9 LLECSVCLDRLDT-----------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         9 ~~~C~iC~~~~~~-----------------~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +-.|+||++.+..                 ..+.++|+|.||..||.+|+..+  ..||+||..+
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~~  110 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW  110 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCCCCee
Confidence            4589999998832                 12335899999999999999864  4799999764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.02  E-value=3.5e-10  Score=85.73  Aligned_cols=55  Identities=25%  Similarity=0.463  Sum_probs=51.0

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ..++++|+|.+..+++|+|.+||++.++...++|||.|+..  |+.||||++||+.+
T Consensus        31 ~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~   85 (466)
T 2pz1_A           31 VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEGWFPASFVRLR   85 (466)
T ss_dssp             EEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEehhHeeec
Confidence            35789999999999999999999999999989999999987  99999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.01  E-value=4.6e-10  Score=84.70  Aligned_cols=57  Identities=23%  Similarity=0.518  Sum_probs=51.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++|+|.++.++||+|++||++.+++. .+++||.++.. +|+.|+||++||++.+.
T Consensus        13 ~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~-~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREG   70 (450)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEECCC
T ss_pred             EEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC-CCceeeechhccccccc
Confidence            47899999999999999999999999997 57799999976 79999999999998654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.01  E-value=2.2e-10  Score=64.84  Aligned_cols=53  Identities=17%  Similarity=0.397  Sum_probs=45.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCC--CccCcCCCccc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRT--QRSGVFPGNYV  110 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~--~~~G~~p~~~v  110 (173)
                      ...++++|.++..++|+|.+|+.+.|+++.  +++||.++....  +++|+||++|+
T Consensus        19 ~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            368899999999999999999999999986  378999996332  36799999998

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.00  E-value=3.1e-10  Score=77.63  Aligned_cols=54  Identities=24%  Similarity=0.616  Sum_probs=44.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +++++++|.++..++|+|++||++.++... +++||.++..  |+.|+||.+||+..
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~~P~~yv~~~   56 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNYIEMK   56 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESS--SCEEEEEGGGEECC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccC--CccceECCcccccc
Confidence            468899999999999999999999998876 6789999965  99999999999754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.99  E-value=3.7e-10  Score=74.69  Aligned_cols=56  Identities=32%  Similarity=0.590  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||++.|++. +++||.++....|+.|+||++|+++.
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~   68 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKA   68 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccc
Confidence            468899999999999999999999999998 67999999755799999999999864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.99  E-value=2e-10  Score=79.14  Aligned_cols=58  Identities=14%  Similarity=0.521  Sum_probs=52.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+++|.+...++|+|.+||++.|+++.+++||.++. ..|+.|+||++||+.+.
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~~yv~~~~  193 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKYR  193 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEEC-TTSCEEEEEGGGSCCCC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEe-CCCCEEEEehHHeEEcC
Confidence            34578999999999999999999999999998999999993 46899999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.98  E-value=6.4e-10  Score=79.92  Aligned_cols=53  Identities=21%  Similarity=0.473  Sum_probs=49.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++.. +|+.|+||.+||+
T Consensus       149 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~  201 (308)
T 3qwy_A          149 VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQ  201 (308)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TSCEEEEEGGGEE
T ss_pred             eEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeC-CCCeeEecccccc
Confidence            4788999999999999999999999999988999999973 5999999999998

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.95  E-value=9e-10  Score=84.03  Aligned_cols=59  Identities=29%  Similarity=0.537  Sum_probs=53.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+|+|.++..+||+|.+||++.|+.+.+++||.|+...+|+.|+||++||++..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~  500 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI  500 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcc
Confidence            35678999999999999999999999999999999999997667999999999998753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.95  E-value=1.2e-09  Score=82.43  Aligned_cols=56  Identities=20%  Similarity=0.435  Sum_probs=49.9

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ++++++|.++.+++|+|++||++.+++. +++||.++...+|+.|+||++||.+.+.
T Consensus        11 ~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A           11 VVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            6899999999999999999999999988 5789999964469999999999987643

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.93  E-value=6e-10  Score=79.12  Aligned_cols=55  Identities=35%  Similarity=0.735  Sum_probs=50.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++++|.+||.+.|+...+++||.|+.  .|+.|+||++|++..
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   57 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKLT   57 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEE--TTEEEEEEGGGEEEG
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEE--CCCCCcCCCcccccc
Confidence            3578999999999999999999999999999999999995  589999999999865

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.46  E-value=1.1e-10  Score=83.73  Aligned_cols=56  Identities=20%  Similarity=0.590  Sum_probs=51.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..++|+|++||+|.|+.+.+++||.++.. +|+.||||.+||+.++
T Consensus       127 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~~  182 (303)
T 2lqn_A          127 YVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEKLV  182 (303)
Confidence            4788999999999999999999999999988999999964 5999999999998864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.92  E-value=4.7e-10  Score=60.82  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=40.5

Q ss_pred             CCccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           9 LLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      .+.||||.+.| .+|+++ ++||+|++.||.+|+..++  +||+.+..+..
T Consensus         3 ~~~CpIs~~~m-~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVP-RRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCC-SSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred             eEEecCCCCCC-CCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence            57899999999 789999 9999999999999998653  59999977643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.88  E-value=2.4e-09  Score=81.77  Aligned_cols=55  Identities=13%  Similarity=0.384  Sum_probs=49.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.+...++|+|++||++.+++.. +++||.++..  |+.|+||.+||++.+
T Consensus        45 ~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~--~~~G~~P~~yv~~~~  100 (495)
T 1opk_A           45 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVN  100 (495)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECS--SCEEEEEGGGEEESS
T ss_pred             EEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeec--CCcceeccccccccc
Confidence            378999999999999999999999999876 7799999986  889999999999764

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.84  E-value=2.1e-09  Score=71.54  Aligned_cols=58  Identities=24%  Similarity=0.579  Sum_probs=49.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v~~~~  114 (173)
                      ...++|+|+|.++..++|+|.+||.+.|+...+ +||.|+... .|+.|+||++|++...
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~   75 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKE   75 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEEC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEec
Confidence            456889999999999999999999999999866 599999622 4789999999998653

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.84  E-value=3.1e-09  Score=62.21  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=48.4

Q ss_pred             CCceeeccCCC--CCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPY--KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~--~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..+++.+++  ......+|+|.+|+++.|+...+++||.++ +..|+.|++|.+|+..+
T Consensus        38 vl~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcR-Ns~GkyGyVP~~yl~~~   97 (102)
T 1ri9_A           38 VLYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCR-NEEGKYGYVLRSYLADN   97 (102)
T ss_dssp             CSSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEE-ETTTEEEEEEGGGSCC-
T ss_pred             EEEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEE-CCCCCCCceeHHHhccc
Confidence            34456666676  556678999999999999999999999999 47899999999998765

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.84  E-value=1.4e-09  Score=82.03  Aligned_cols=58  Identities=28%  Similarity=0.712  Sum_probs=52.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.++..++|+|.+||++.|+++.+++||.++....|+.|+||++|+++.
T Consensus         2 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~   59 (452)
T 1fmk_A            2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (452)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             ceEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccc
Confidence            3457899999999999999999999999999899999999754699999999999864

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.82  E-value=2.6e-09  Score=82.25  Aligned_cols=57  Identities=26%  Similarity=0.704  Sum_probs=51.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+|+|.++..++|+|.+||++.|+++.+++||.++....|+.|+||++||+..
T Consensus        86 ~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~  142 (535)
T 2h8h_A           86 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS  142 (535)
T ss_dssp             -CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             cEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccc
Confidence            457899999999999999999999999999899999999755799999999999864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.82  E-value=3.7e-09  Score=57.02  Aligned_cols=49  Identities=18%  Similarity=0.522  Sum_probs=39.1

Q ss_pred             ccCCccccccccccCCCeeecCCC-----CCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh-----~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ++...|.||++.. ..+.+++|.+     .||..||.+|+...+...||+|+..+
T Consensus         4 ~~~~~CrIC~~~~-~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEEL-GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEEC-SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCEeEEeecCC-CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence            3556899999876 5566788654     89999999999865557899999765

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.77  E-value=4.3e-09  Score=79.75  Aligned_cols=56  Identities=25%  Similarity=0.434  Sum_probs=51.0

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+|+|.+...++++|.+||++.|+...+++||.|+.+  |+.||||++||+..
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~   85 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEGWFPASFVRLR   85 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEEC--CcEEEEehhHeeec
Confidence            456789999999999999999999999999999999999964  89999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.77  E-value=6.1e-09  Score=78.56  Aligned_cols=57  Identities=28%  Similarity=0.590  Sum_probs=50.9

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+|+|.++..++|+|.+||++.|+++ .+++||.++.. +|+.|+||++||++.
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~-~g~~G~~P~~yv~~~   68 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKR   68 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEEC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC-CCceeeechhccccc
Confidence            3468899999999999999999999999998 57799999954 799999999999864

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.76  E-value=8.3e-10  Score=84.00  Aligned_cols=56  Identities=29%  Similarity=0.678  Sum_probs=0.0

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ..++++|+|.+...++|+|.+||+|.|+... ++|||.|+.. +|+.|+||.+||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEAI  485 (486)
T ss_dssp             ----------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC-CCCEEEEeHHHceeC
Confidence            3578999999999999999999999998876 4599999986 689999999999875

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.74  E-value=6.2e-09  Score=60.41  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCC--CCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++ ...+..+|++..|+++.++....  ++||.++.. .|+.|+||.+||+.
T Consensus        31 a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~-~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           31 AKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTA-RGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECT-TCCBCCCCGGGEEE
T ss_pred             EEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECC-CCCCCccchhhEEE
Confidence            455565 45577899999999999999875  679999997 89999999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.73  E-value=1.8e-09  Score=77.06  Aligned_cols=54  Identities=20%  Similarity=0.498  Sum_probs=46.4

Q ss_pred             ceecccCCCCCCc-----ceeecCCCEEEEEEcCCCCeeEEEeCCCC----cEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEY-----ELELRVGDLIYVHKKRDDGWYKGTLQRTG----RTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~-----el~~~~g~~v~v~~~~~~~w~~~~~~~~g----~~G~~P~~~v~~  168 (173)
                      ++++++|.++..+     +|+|++||++.|+...+++||.++...++    +.|+||++|+.+
T Consensus         4 vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            5788899887776     99999999999999988999999987322    789999999854

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.69  E-value=3.6e-08  Score=53.65  Aligned_cols=41  Identities=20%  Similarity=0.515  Sum_probs=37.7

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEe
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTS   96 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~   96 (173)
                      ...++|+++|.++..++|+|.+||++.|+.+.+++||.++.
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            45678999999999999999999999999998999999985

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.67  E-value=2e-08  Score=75.76  Aligned_cols=56  Identities=30%  Similarity=0.617  Sum_probs=50.1

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+|+|.++..++|+|.+||.+.|+++ +++||.++....|+.|+||++|+++.
T Consensus         9 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~   64 (454)
T 1qcf_A            9 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   64 (454)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             eEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccc
Confidence            457899999999999999999999999988 47899999656789999999999854

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.66  E-value=9.6e-08  Score=54.67  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             ecccCCCCCCcceeecCCCEEEEEEcCC----CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         117 CIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       117 ~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +..++.+....+|++++||+|.|+++.+    ..||.+...  |..||||++|++++.
T Consensus        22 ~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtg--g~~GyvPs~yLe~~~   77 (92)
T 1ug1_A           22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG--VTKGFVYSSFLKPYN   77 (92)
T ss_dssp             ESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECS--SSEEEEEGGGEEECC
T ss_pred             eccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECC--CcEEeeEhhhceEcc
Confidence            3344445566799999999999999774    345555555  999999999999874

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.62  E-value=7.1e-09  Score=73.93  Aligned_cols=55  Identities=22%  Similarity=0.443  Sum_probs=47.7

Q ss_pred             eeccCCCCCCCcc-----ccceecCCEEEEEEEcCCCEEEEEeCCCC----ccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDD-----ELELRRGSVYTVTERCQDGWFKGTSQRTQ----RSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~-----el~~~~g~~v~v~~~~~~~w~~~~~~~~~----~~G~~p~~~v~~~  113 (173)
                      ++|+|+|.++..+     +|+|.+||++.|+++.+++||.++....+    +.|+||++|+.+.
T Consensus         4 vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            5789999988887     99999999999999989999999975433    7899999998654

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.59  E-value=4.8e-08  Score=56.72  Aligned_cols=55  Identities=15%  Similarity=0.162  Sum_probs=45.8

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcC--CCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +..++++++ ......+|+|.+|+.+.|+.+.+  ++||.++ ++.|+.|++|.+|++.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~R-N~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGR-TARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEE-CTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEE-CCCCCCCccchhhEEE
Confidence            445667776 45677899999999999999876  6799999 5899999999999864

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.58  E-value=4.6e-08  Score=74.64  Aligned_cols=55  Identities=22%  Similarity=0.547  Sum_probs=49.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+|+|.++..++|+|.+||++.|+++. +++||.++.  .++.|+||++|+++.
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~--~~~~G~~P~~yv~~~   99 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITPV   99 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC--SSCEEEEEGGGEEES
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeee--cCCcceecccccccc
Confidence            3578999999999999999999999999986 779999994  478899999999864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.58  E-value=2e-08  Score=58.59  Aligned_cols=45  Identities=27%  Similarity=0.645  Sum_probs=37.1

Q ss_pred             ccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus        11 ~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      -|++|.-.+....++++|.|.||.+|...|...+. ..||.|+.++
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~-k~Cp~C~~~V   47 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD-KMCPGCSDPV   47 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC-CBCTTTCCBC
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC-CCCcCcCCee
Confidence            48889887756789999999999999998876432 4799999776

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.57  E-value=4.2e-08  Score=76.93  Aligned_cols=57  Identities=25%  Similarity=0.391  Sum_probs=47.2

Q ss_pred             ceecccCC---CCCCcceeecCCCEEEEEEc-----CCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         115 FRCIVPYP---PNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       115 ~~~~~~~~---~~~~~el~~~~g~~v~v~~~-----~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      +++++||.   +..+.+|+|++||+|.+...     .++|||.|+...+|++|+||++||..+-.
T Consensus       576 ~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lpt  640 (655)
T 3pvl_A          576 VVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPT  640 (655)
T ss_dssp             EEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             hhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCC
Confidence            67889998   66778999999999988877     36899999976689999999999987643

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.56  E-value=2.2e-08  Score=71.46  Aligned_cols=52  Identities=23%  Similarity=0.484  Sum_probs=38.1

Q ss_pred             ccCCccccccccccCCCe-------eecCCCCCChhhHHHHHhcccc---------cCCCCCCCCCce
Q psy9669           7 NDLLECSVCLDRLDTSSK-------VLPCQHTFCKKCLEEIVSSHKE---------LRCPECPTFVPE   58 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~-------~~~Cgh~fc~~Cl~~~~~~~~~---------~~CP~Cr~~i~~   58 (173)
                      +....|+||.+.+.....       ...|+|.||..||.+|+.+...         -.||.||.++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            356689999998732111       2379999999999999985321         259999987753

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.50  E-value=1.3e-08  Score=77.43  Aligned_cols=55  Identities=35%  Similarity=0.669  Sum_probs=0.0

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+|+|.+...++|+|.+||+|.|+... +.+||.|+.. +|+.|+||++||+++
T Consensus       430 ~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          430 RVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC-CCCEEEEeHHHceeC
Confidence            478999999999999999999999998876 4589999953 589999999999764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.33  E-value=6.4e-07  Score=61.77  Aligned_cols=54  Identities=20%  Similarity=0.528  Sum_probs=46.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCC---eeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDG---WYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~---w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..+++++.+....++.++.|+++.++.+.+.+   ||.++..  |+.|+||.+||+.+.
T Consensus       173 ~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~--~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN--DKEGYVPRNLLGLYP  229 (239)
T ss_dssp             EEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEET--TEEEEEEGGGEECCC
T ss_pred             EEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEEC--CcEEEeehHHeeECC
Confidence            35677899999999999999999998876554   9999986  999999999998653

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.32  E-value=1.7e-07  Score=73.53  Aligned_cols=56  Identities=21%  Similarity=0.428  Sum_probs=47.1

Q ss_pred             eeeccCCCC---CCCccccceecCCEEEEEEE-----cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYK---PQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~---~~~~~el~~~~g~~v~v~~~-----~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.   +..+..|+|++||+|.+...     .+++||.|++..+|+.|+||.+||..+
T Consensus       575 ~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~l  638 (655)
T 3pvl_A          575 YVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM  638 (655)
T ss_dssp             EEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             hhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEEC
Confidence            467899998   67778999999999998887     468999999878899999999999765

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.31  E-value=4.8e-07  Score=64.95  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=44.0

Q ss_pred             cceecccCCCCCCc-------ceeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCC
Q psy9669         114 KFRCIVPYPPNSEY-------ELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASF  165 (173)
Q Consensus       114 ~~~~~~~~~~~~~~-------el~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~  165 (173)
                      .++++++|.+...+       +|+|.+||++.|+...+++||.++... .|..|+||+++
T Consensus        40 ~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           40 AVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            36788999988765       499999999999999889999999853 36799999875

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.31  E-value=7.5e-07  Score=50.99  Aligned_cols=55  Identities=13%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcC----CCEEEEEeCCCCccCcCCCccccCCcc
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPAKF  115 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~~~~G~~p~~~v~~~~~  115 (173)
                      +.+..++.+...-++++.+||+|.|+.+.+    ..||...  ..|..||+|++|+++.+.
T Consensus        20 Y~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vd--tgg~~GyvPs~yLe~~~~   78 (92)
T 1ug1_A           20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID--NGVTKGFVYSSFLKPYNP   78 (92)
T ss_dssp             EEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEE--CSSSEEEEEGGGEEECCC
T ss_pred             EEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEE--CCCcEEeeEhhhceEccc
Confidence            445556677778899999999999999753    3455555  369999999999998753

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.30  E-value=6.1e-07  Score=64.41  Aligned_cols=53  Identities=15%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             ceeeccCCCCCCCccc-------cceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCcc
Q psy9669          57 PEYIAIYPYKPQKDDE-------LELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNY  109 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~  109 (173)
                      -.++|+|+|.+...++       |+|.+||++.|++..+++||.++... .+..|+||++.
T Consensus        39 ~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           39 FAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             EEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            3568999999987664       89999999999999999999999643 36789999986

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.06  E-value=2.6e-06  Score=58.70  Aligned_cols=50  Identities=24%  Similarity=0.582  Sum_probs=40.6

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ....|.+|.++......+-.|+|.||..|+..|+.......||.|+...+
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            46689999998855555556999999999999998766678999987553

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.06  E-value=4.8e-06  Score=61.62  Aligned_cols=56  Identities=18%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEc---CCCCeeEEEeCCCC----cEEEecCCCeEE
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRTG----RTGLFPASFMKQ  168 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~g----~~G~~P~~~v~~  168 (173)
                      ..++++++|.+..+.+|+|..||++.|...   .+.+||.++...++    ..|+||.+|+.+
T Consensus       107 ~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          107 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            346789999998888999999999999998   46789999976222    489999998754

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.98  E-value=5.4e-06  Score=59.12  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=41.8

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCC---------eeEEEeCC----CCcEEEecCCCeE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDG---------WYKGTLQR----TGRTGLFPASFMK  167 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~---------w~~~~~~~----~g~~G~~P~~~v~  167 (173)
                      ++++++|.+..+.+|+|..||++.|+...+++         ||.++...    ++..|++|.+|+.
T Consensus         7 VRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~a   72 (308)
T 3kfv_A            7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRA   72 (308)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHH
T ss_pred             EEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHH
Confidence            46889999999999999999999999987655         99998752    1368999998764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.96  E-value=4.5e-06  Score=66.53  Aligned_cols=54  Identities=20%  Similarity=0.493  Sum_probs=46.1

Q ss_pred             ceecccCCCCCCcc-----eeecCCCEEEEEEcCCCCeeEEEeCCC----CcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYE-----LELRVGDLIYVHKKRDDGWYKGTLQRT----GRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~e-----l~~~~g~~v~v~~~~~~~w~~~~~~~~----g~~G~~P~~~v~~  168 (173)
                      ++++++|.+..+.+     |+|++||++.++...+++||.++....    ++.|+||.+|+.+
T Consensus       430 vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          430 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             EEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            57899999988877     999999999999998899999997632    3469999999854

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=97.92  E-value=6.5e-06  Score=56.67  Aligned_cols=54  Identities=28%  Similarity=0.594  Sum_probs=46.6

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCC---EEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDG---WFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~---w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...+++++.+....++.+..|+.+.++.+.+.+   ||.+..  .++.|+||.+|++..
T Consensus       172 ~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~--~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLY  228 (239)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECC
T ss_pred             eEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEE--CCcEEEeehHHeeEC
Confidence            456788999999999999999999999886655   999995  589999999999865

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.92  E-value=9.9e-06  Score=61.09  Aligned_cols=54  Identities=19%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEc---CCCCeeEEEeCCC-C---cEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRT-G---RTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~-g---~~G~~P~~~v~~  168 (173)
                      +++.++|.+..+.+|+|+.||++.|+..   .+.+||.++.... +   +.|+||.+|+.+
T Consensus       101 Vralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A          101 IRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            5688999999899999999999999998   4678999987532 2   589999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.88  E-value=8.5e-06  Score=64.96  Aligned_cols=55  Identities=22%  Similarity=0.439  Sum_probs=46.7

Q ss_pred             eeccCCCCCCCccc-----cceecCCEEEEEEEcCCCEEEEEeCCC----CccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDE-----LELRRGSVYTVTERCQDGWFKGTSQRT----QRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~e-----l~~~~g~~v~v~~~~~~~w~~~~~~~~----~~~G~~p~~~v~~~  113 (173)
                      .+++|+|.+...++     |+|.+||++.|++..+.+||.++....    +..|+||++|+.+.
T Consensus       430 vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          430 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             EEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            46999999988888     999999999999998999999986433    34699999998654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.85  E-value=7.3e-06  Score=60.69  Aligned_cols=55  Identities=16%  Similarity=0.316  Sum_probs=46.2

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEE---cCCCEEEEEeCCCC----ccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQRTQ----RSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~~----~~G~~p~~~v~~~  113 (173)
                      .+++|+|.+....+|+|..||++.|++.   .+.+||.+.....+    ..|++|++|+.+.
T Consensus       109 vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~  170 (391)
T 3tsz_A          109 IRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ  170 (391)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHH
T ss_pred             cccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHH
Confidence            4589999999999999999999999998   57889999864332    4799999998753

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.83  E-value=6.3e-06  Score=58.78  Aligned_cols=55  Identities=20%  Similarity=0.374  Sum_probs=43.0

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCC---------EEEEEeCC----CCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDG---------WFKGTSQR----TQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~---------w~~~~~~~----~~~~G~~p~~~v~~~  113 (173)
                      .+++|+|.++.+++|+|.+||++.|++...++         ||.+....    ++..|++|++++.+.
T Consensus         7 VRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq   74 (308)
T 3kfv_A            7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQ   74 (308)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHH
T ss_pred             EEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHH
Confidence            45899999999999999999999999986555         99998632    236799999987653

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.82  E-value=2.1e-05  Score=55.74  Aligned_cols=52  Identities=13%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ..+.+++||.+   .++++.+|+.+.++...+..||.++.. +|..|+||++|+..
T Consensus       199 ~~v~al~dy~~---~e~~~~kge~~~l~~~s~~~wW~v~~~-~G~~g~vPs~~~~i  250 (283)
T 3pe0_A          199 LPLLAVCDYKQ---VEVTVHKGDECQLVGPAQPSHWKVLSS-SGSEAAVPSVCFLV  250 (283)
T ss_dssp             EEEEECSCEEC---SSCEECTTCEEEEEEECSTTEEEEECC----EEEEEGGGEEC
T ss_pred             ceEEeecCccC---CcccccCCCEEEEeeCCCCCceEEEcC-CCCEeeccceEEee
Confidence            45678889877   379999999999999877789999987 78999999999864

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.75  E-value=2.6e-05  Score=55.45  Aligned_cols=50  Identities=26%  Similarity=0.602  Sum_probs=35.3

Q ss_pred             ceecccCCCCCCc-----ceeecCCCEEEEEEcCCCCeeEEEeCC----CCcEEEecCC
Q psy9669         115 FRCIVPYPPNSEY-----ELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPAS  164 (173)
Q Consensus       115 ~~~~~~~~~~~~~-----el~~~~g~~v~v~~~~~~~w~~~~~~~----~g~~G~~P~~  164 (173)
                      +++.++|.+..+.     .|+|+.||++.|....+++||.++...    ....|++|+.
T Consensus         8 vRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A            8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             EEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             EEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            5677888876543     599999999999999999999998641    2347999985

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.73  E-value=1.8e-05  Score=59.70  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEE---cCCCEEEEEeCCC-C---ccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQRT-Q---RSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~~-~---~~G~~p~~~v~~~  113 (173)
                      .+++++|.+..+.+|+|.+||++.|++.   .+.+||.+..... +   ..|+||++|+.+.
T Consensus       101 Vralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~  162 (468)
T 3shw_A          101 IRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ  162 (468)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHH
T ss_pred             cccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHH
Confidence            4689999999999999999999999998   5778999986333 2   5799999998653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.70  E-value=3.5e-05  Score=52.23  Aligned_cols=53  Identities=38%  Similarity=0.848  Sum_probs=47.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++++|.++...++.+++|+++.+....+.+||.+...  |+.|++|.+|+..
T Consensus        16 ~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~--g~~gl~p~~~v~~   68 (222)
T 3ehr_A           16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE   68 (222)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEET--TEEEEEEHHHHHH
T ss_pred             EEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccC--Ccceeechhhccc
Confidence            3578999999999999999999999999888999999987  9999999988754

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=97.63  E-value=0.00036  Score=49.96  Aligned_cols=94  Identities=13%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             ccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc------------cee------ccc-CCCCCCcceeec
Q psy9669          72 ELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK------------FRC------IVP-YPPNSEYELELR  132 (173)
Q Consensus        72 el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~------------~~~------~~~-~~~~~~~el~~~  132 (173)
                      .-.+..|+.+.|+++ + +|+..+. ..|..||++..++....            ..+      ++. .......-..+.
T Consensus        34 ~~~l~~G~~v~Vl~~-~-gW~~V~~-~dG~~GwV~~~~l~~~~~~~~~~~~~~~~~vvt~~~~~vr~~p~~~~~~~~~l~  110 (306)
T 3npf_A           34 STQALLGMPVKVLQY-N-GWYEIQT-PDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESSQPVSDVV  110 (306)
T ss_dssp             EEEEETTCEEEEEEE-S-SEEEEEC-TTSCEEEEEGGGEEEECHHHHHHHHHSCEEEECSSEEEEESSSSTTSCEEEEEE
T ss_pred             eEEEcCCCEEEEEEE-C-CEEEEEc-CCCCEEEEEhHHeeecChhhhhhhccCCcEEEeecceeEEeCCCCCCceEEEEc
Confidence            346788999999987 3 6988885 47899999998876421            111      111 011222346788


Q ss_pred             CCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         133 VGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       133 ~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .|..+.+.+. .++|++.+.. +|+.||++..++.+.+
T Consensus       111 ~Gt~v~v~~~-~~~W~kV~~p-dG~~GyV~~~~l~~~~  146 (306)
T 3npf_A          111 AGNRLKWEGS-KGHFYQVSYP-DGRKAYLSKSISQPEA  146 (306)
T ss_dssp             TTCEEEEEEE-ETTEEEEECT-TSCEEEEETTSEEEHH
T ss_pred             CCCEEEEEee-cCCEEEEEcC-CCCeEEEEeeccceee
Confidence            9999988775 5779998875 5899999999998754

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.62  E-value=3.3e-05  Score=54.91  Aligned_cols=53  Identities=25%  Similarity=0.580  Sum_probs=36.7

Q ss_pred             eeccCCCCCCCcc-----ccceecCCEEEEEEEcCCCEEEEEeCC----CCccCcCCCcccc
Q psy9669          59 YIAIYPYKPQKDD-----ELELRRGSVYTVTERCQDGWFKGTSQR----TQRSGVFPGNYVA  111 (173)
Q Consensus        59 ~~~~~~~~~~~~~-----el~~~~g~~v~v~~~~~~~w~~~~~~~----~~~~G~~p~~~v~  111 (173)
                      .+|.++|.+...+     .|+|.+||++.|.+..+++||.+..-.    ....|++|+....
T Consensus         8 vRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~   69 (292)
T 3tvt_A            8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW   69 (292)
T ss_dssp             EEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHH
T ss_pred             EEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHH
Confidence            4688899887654     489999999999999999999998521    2347999986543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.52  E-value=2.6e-05  Score=46.44  Aligned_cols=33  Identities=18%  Similarity=0.648  Sum_probs=26.7

Q ss_pred             cCCccccccccccCCCee--ecCCCCCChhhHHHH
Q psy9669           8 DLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEI   40 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~--~~Cgh~fc~~Cl~~~   40 (173)
                      +++.|+||.+.+..+++.  +.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            468999999753256666  899999999999973

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.44  E-value=7.7e-05  Score=50.48  Aligned_cols=57  Identities=37%  Similarity=0.751  Sum_probs=49.6

Q ss_pred             CCCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..+..+.++++|.++..+++.+..|+.+.+....+.+||.+..  .+..|++|.+|+..
T Consensus        12 ~~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~--~g~~gl~p~~~v~~   68 (222)
T 3ehr_A           12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAE   68 (222)
T ss_dssp             -CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEE--TTEEEEEEHHHHHH
T ss_pred             CCceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhccc--CCcceeechhhccc
Confidence            3456678999999999999999999999999999999999995  48899999988764

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=51.65  Aligned_cols=53  Identities=17%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++++++|.+.   ++++.+|+.+.+++..+..||.++. ..|..|++|++|+...
T Consensus       199 ~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~-~~G~~g~vPs~~~~ip  251 (283)
T 3pe0_A          199 LPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLS-SSGSEAAVPSVCFLVP  251 (283)
T ss_dssp             EEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEEC-C---EEEEEGGGEECC
T ss_pred             ceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEc-CCCCEeeccceEEeeC
Confidence            356789999773   7999999999999998888999995 6788999999998754

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=97.14  E-value=0.0043  Score=44.50  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             ceecCCEEEEEEEcCCCEEEEEe-------CCCCccCcCCCccccCC----------ccee------ccc-CCCCCCcce
Q psy9669          74 ELRRGSVYTVTERCQDGWFKGTS-------QRTQRSGVFPGNYVAPA----------KFRC------IVP-YPPNSEYEL  129 (173)
Q Consensus        74 ~~~~g~~v~v~~~~~~~w~~~~~-------~~~~~~G~~p~~~v~~~----------~~~~------~~~-~~~~~~~el  129 (173)
                      .+..|+.+.|+++ +++|.....       ...|..||++..++...          ...+      ++. ...... ..
T Consensus        63 qll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~~~~~~~~~~~Vt~~~~~l~~~p~~~~~-~~  140 (311)
T 3h41_A           63 QALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHK-SL  140 (311)
T ss_dssp             EEETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHHHHTTTSCEEEECSSEEEEEESSCTTCC-EE
T ss_pred             eecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcCccccccccccCCeEEEEeCceEEeccCCCCCc-eE
Confidence            4667999999987 578999884       24688899999887641          0111      111 112222 38


Q ss_pred             eecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         130 ELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       130 ~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .+..|..+.+.++ .++|+..... +|+.||++..++...+
T Consensus       141 ~l~~Gt~Lpv~~e-~~~w~~V~~p-~G~~G~V~~~~l~~~~  179 (311)
T 3h41_A          141 EVSYNTRLPLLSE-DTISYRVLLP-NGQKAWLRKNDGTFYR  179 (311)
T ss_dssp             EEETTCEEEEEEE-CSSEEEEECT-TSCEEEEEGGGEEEES
T ss_pred             EEeCCCEEEEEee-cCCEEEEECC-CCccceeccccccccc
Confidence            8899999988876 5789888765 6889999998887654

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.08  E-value=0.0007  Score=50.93  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             CCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       112 ~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      +..+.++++|..   .++++.+|+.+.+....+..||.++.. +|..|+||+.|+..
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~-~G~~~~vPavcf~i  335 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGP-GGVDMLVPSVGLII  335 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECS-SSCCEEEEGGGEEC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecC-CCCeeccceeEEec
Confidence            345678888884   789999999999999988899999987 78999999988753

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.82  E-value=0.0068  Score=32.65  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=44.3

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCC----cEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG----RTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g----~~G~~P~~~v~~~  169 (173)
                      ..+..+|.+..++++++..|++|.++......+..+...++.    ..||+|...+...
T Consensus        10 m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vLg~~   68 (74)
T 1wfw_A           10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             EECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             EEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEeccc
Confidence            355779999999999999999999999887788777766544    4799998765443

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=96.69  E-value=0.0046  Score=34.37  Aligned_cols=40  Identities=28%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      --.+..|+.+.+++. .++|++.+..  |..||+...|+....
T Consensus        24 i~~l~~G~~v~v~~~-~~~W~kV~~~--g~~GwV~~~yl~~~~   63 (74)
T 2krs_A           24 IGTLRNNDKVEIIKE-VDGWYEIRFN--GKVGYASKSYITIVN   63 (74)
T ss_dssp             EEEEETTCEEEEEEE-ETTEEEEEET--TEEEEECSSSEEESS
T ss_pred             HEEECCCCEEEEEEE-eCCEEEEEEC--CeEEEEEhHHcCCCC
Confidence            356788999999887 4689999987  999999999998653

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=96.67  E-value=0.0037  Score=34.94  Aligned_cols=40  Identities=15%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             ceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       128 el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      --.+..|+.+.++++ .++|++.+..  |..|||...|+....
T Consensus        26 i~~l~~G~~v~vl~~-~~~W~kV~~~--g~~GwV~~~yl~~~~   65 (76)
T 2kt8_A           26 IGSLSGNTKVTIVGE-EGAFYKIEYK--GSHGYVAKEYIKDIK   65 (76)
T ss_dssp             EEEECTTCEEEEEEE-ETTEEEEEET--TEEEEEEGGGEEEEE
T ss_pred             hEEECCCCEEEEEEE-eCCEEEEEEC--CEEEEEEhHHhCcCC
Confidence            356789999999887 4789999986  999999999998753

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=96.58  E-value=0.0014  Score=36.29  Aligned_cols=37  Identities=30%  Similarity=0.777  Sum_probs=29.9

Q ss_pred             cccCCccccccccccCCCeeecC----CCCCChhhHHHHHhc
Q psy9669           6 LNDLLECSVCLDRLDTSSKVLPC----QHTFCKKCLEEIVSS   43 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~~~~~~~~C----gh~fc~~Cl~~~~~~   43 (173)
                      -.+.+.|-+|++.+ +..-+..|    .|.||..|-+..+..
T Consensus        12 ~~a~l~CtlC~erL-EdtHFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           12 NSGPLCCTICHERL-EDTHFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             SCCSCCCSSSCSCC-SSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCCeeEeecchhhh-ccCceeeCCCccCCeeeccccHHHHHh
Confidence            35788999999998 66555555    799999999988874

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=96.39  E-value=0.001  Score=36.64  Aligned_cols=39  Identities=23%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             eeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         129 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       129 l~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      -.+.+|+.+.+++. .++|++.+..  |..||+...|+...+
T Consensus        26 ~~l~~G~~v~v~~~-~~~W~~V~~~--G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           26 GALPQGQKVQVISE-NSGWSKINYN--GQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCCSSSSCCCCEE-ETTEEEEEET--TEEEEEETTSCSCCC
T ss_pred             EEECCCCEEEEEEe-cCCEEEEEEC--CEEEEEEhHHccchh
Confidence            45778888888776 4789999985  999999999997765

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.20  E-value=0.0031  Score=47.46  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++++|..   .++.+.+|+.+.+++..+..||.+.. ..|..|++|+.|+...
T Consensus       285 ~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~-~~G~~~~vPavcf~ip  336 (450)
T 3r6n_A          285 ILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTG-PGGVDMLVPSVGLIIP  336 (450)
T ss_dssp             EEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEEC-SSSCCEEEEGGGEECC
T ss_pred             eEEEeccccC---CeeeEecCCEEEEecCCCCCceEEec-CCCCeeccceeEEecC
Confidence            4568889884   78899999999999999999999994 5788999999987653

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=94.86  E-value=0.16  Score=27.38  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=41.9

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCC----ccCcCCCccc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ----RSGVFPGNYV  110 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~----~~G~~p~~~v  110 (173)
                      ....+..+|.+..++++....|+.+.++...+.+..........    ..||+|...+
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vL   65 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEe
Confidence            34456789999999999999999999999888887776644333    3588887654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.26  E-value=0.03  Score=30.28  Aligned_cols=50  Identities=26%  Similarity=0.445  Sum_probs=34.3

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhc--ccccCCCCCCC
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--HKELRCPECPT   54 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~--~~~~~CP~Cr~   54 (173)
                      +.......|.||.+.- .-...-.|...||..|+..-+..  .....||.|..
T Consensus         7 ~~~~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~   58 (66)
T 2lri_C            7 QNLAPGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG   58 (66)
T ss_dssp             TCCCTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred             cCCCCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence            3345667899998643 33334469999999999755543  23468999974

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.041  Score=40.10  Aligned_cols=51  Identities=24%  Similarity=0.466  Sum_probs=38.1

Q ss_pred             ccCCccccccccccCCCeeecCCCCCChhhH--HHHHhcccccCCCCCCCCCc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCL--EEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl--~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      .-.+.||+=...+..+.+...|.|..|++-.  ...........||+|...+.
T Consensus       247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~  299 (371)
T 3i2d_A          247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA  299 (371)
T ss_dssp             EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred             EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence            4468999999988778888899999888763  22223345688999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-18
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	4e-14
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-18
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-13
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	3e-16
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-14
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	3e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	3e-12
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	5e-16
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	5e-16
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	8e-11
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	6e-16
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	6e-14
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-15
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	6e-12
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-15
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	6e-13
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-15
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	8e-13
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-15
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-12
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	6e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-11
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	7e-15
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-13
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-12
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-14
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-13
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-14
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	5e-11
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	2e-14
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	8e-10
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	3e-14
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	3e-14
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	4e-10
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	4e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-12
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	6e-14
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-10
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	6e-14
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-10
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-13
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-09
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	3e-13
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	1e-12
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-13
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	1e-10
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-10
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-13
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-11
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-12
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	4e-10
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-12
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	4e-11
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-11
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	2e-12
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	6e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-12
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-11
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	4e-12
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	6e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	6e-12
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	7e-10
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-09
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	4e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	2e-08
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	6e-11
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	6e-08
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-10
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	5e-09
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-10
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	2e-08
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	6e-10
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-07
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	3e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	7e-08
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-09
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	1e-08
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-04
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-08
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	6e-06
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	6e-08
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-08
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-07
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-07
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-06
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	5e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	8e-06
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	9e-06
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	1e-04
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	7e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.001
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	0.001

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 1e-18
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           V  ++A+Y Y+ + + +L  ++G    +    +  W+   S  T ++G  P NYVAP+ 
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 4e-14
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           F  +  Y   +E +L  + G+ + +    +  W+      TG+TG  P++++  SD
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (176), Expect = 3e-18
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A+Y Y+   +D+L   +G  + +    +  W++  S  T  +G  P NYVAP
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 2e-13
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           F  +  Y   +E +L    G+   +    +  W++     TG TG  P++++ 
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.6 bits (165), Expect = 3e-16
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           EY  I P        L L  G +  +T+   +  W++G +  T   G FP N V P
Sbjct: 12  EYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (150), Expect = 4e-14
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
           +  I P P      L L  GD++ + K      W++G    T   G FP + + 
Sbjct: 13  YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 3e-16
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           PTF     A++ YK Q++DEL   + ++    E+ + GW++G     ++   FP NYV  
Sbjct: 3   PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEE 61

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (137), Expect = 3e-12
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 111 APAKFRCIV----PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
               F+C V     Y    E EL      +I   +K++ GW++G      +   FP++++
Sbjct: 1   GSPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYV 59

Query: 167 K 167
           +
Sbjct: 60  E 60

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 5e-16
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           + A+Y Y     DE+  + G      +   +GW  GT QRT R+G+ P NYV  
Sbjct: 6   FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (151), Expect = 2e-14
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           FR +  Y      E+  + GD I   +  D+GW  GT+QRTGRTG+ PA++++
Sbjct: 6   FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 5e-16
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           P      IA++ Y+P  D +L   +G    + E     W+K  S  T + G  P N+VA 
Sbjct: 3   PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFVAK 61

Query: 113 A 113
           A
Sbjct: 62  A 62

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 8e-11
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
              +  Y P+ + +L    G+ + + ++  + W       TG+ G  P +F+ ++
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWK-AQSLTTGQEGFIPFNFVAKA 62

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (162), Expect = 6e-16
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P   A Y Y   +D+EL           E   D W+ G  ++    G+FP NYV
Sbjct: 1   PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.9 bits (148), Expect = 6e-14
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
                Y    + EL     D I   +  DD W+ G L++ G  GLFP++++ 
Sbjct: 4   TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 1e-15
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 56  VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           + + +A+Y Y P   ++L+LR+G  Y + E     W++    +  + G  P NYV  A+
Sbjct: 8   LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (135), Expect = 6e-12
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           K   +  Y P +  +L+LR GD  ++ ++ +  W++    + G+ G  P++++ +++
Sbjct: 10  KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (158), Expect = 2e-15
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 54  TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           T+V    A++ + PQ+D EL  RRG    V +     W+KG      ++G+FP NYV P
Sbjct: 2   TYV---QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG--ACHGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 6e-13
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP +++ 
Sbjct: 5   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVT 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +A+Y Y+ +   E+ +++G + T+       W+K   +   R G  P  YV  
Sbjct: 3   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.8 bits (140), Expect = 8e-13
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
              +  Y   S  E+ ++ GD++ +    +  W+K   +   R G  PA+++K
Sbjct: 3   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVK 53

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 5e-15
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            EYIA+YPY   +  +L    G    VT++    W+ G      RSG+FP NYV P
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTG--SIGDRSGIFPSNYVKP 61

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 9e-12
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
           ++  + PY      +L    G+ I V +K D  W+ G++    R+G+FP++++K  D
Sbjct: 10  EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPKD 63

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 6e-15
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y Y+    ++L  ++G    V E     W+K  S  T++ G  P NYVA   
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
              +  Y      +L  + GD + V ++  + W       T + G  P++++ 
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVA 58

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 7e-15
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
            +  A++ Y+  + ++LE + G +  V  +  + W +G S+   + G+FP  +V  +
Sbjct: 6   SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFVEDS 60

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-13
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
           +   +  Y      +LE + GD+I V  K ++ W +G     G+ G+FP  F++ S
Sbjct: 7   QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDS 60

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 8e-15
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 17/89 (19%)

Query: 94  GTSQRTQRSGVFPGNYVAP---------------AKFRCIVPYPPNSEYELELRVGDLIY 138
           G+S  + + G FP ++V                  +   +  Y  N+E EL    G LI 
Sbjct: 1   GSSGSSGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLIN 60

Query: 139 VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           V  K D  W++G +   G TGLFP++++K
Sbjct: 61  VMNKDDPDWWQGEI--NGVTGLFPSNYVK 87

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 1e-14
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 39  EIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR 98
           +++    E   P     V + IA+Y Y    +DEL   +G +  V  +    W++G  + 
Sbjct: 18  KLLGPSSERATPA-FHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG--EI 74

Query: 99  TQRSGVFPGNYV 110
              +G+FP NYV
Sbjct: 75  NGVTGLFPSNYV 86

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            A+Y ++  ++DEL  R G V  V +     W+ G  +   + G+FP NYVAP
Sbjct: 5   RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (140), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           R +  +    E EL  R G+++ V    +  W+ G L    + GLFPA+++ 
Sbjct: 5   RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVA 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 62.4 bits (152), Expect = 2e-14
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            A++ + PQ+  EL  +RG V T+  +    W++G  Q   R G+FP NYV P
Sbjct: 6   QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVCP 56

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 57.8 bits (140), Expect = 9e-13
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  + P    EL  + GD+I +  K D  W++G L    R G+FP++++ 
Sbjct: 6   QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVC 55

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 2e-14
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 50  PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           PE       Y+AI  Y   + DE+ L  G    V  +  DGW+    ++   +G FP  Y
Sbjct: 8   PEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMY 65

Query: 110 VAPAK 114
           +  + 
Sbjct: 66  LQKSG 70

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 5e-11
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
            +  I  Y      E+ L  G+ + V  K  DGW+    ++   TG FP+ ++++S 
Sbjct: 16  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQKSG 70

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (152), Expect = 2e-14
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
            +A+Y ++  +  +L L RG  Y + E+    W++    +    G  P NYV   K
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (121), Expect = 8e-10
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
              +  +     ++L L  G    + +K D  W++    + G  G  P++++ 
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVT 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (150), Expect = 3e-14
 Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 58  EY-IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           EY  A++ +    +++L  ++G +  + ++ ++ W+       +R G+ P  YV  
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (139), Expect = 1e-12
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 113 AKF-RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           A++ R +  +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +++
Sbjct: 1   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVE 55

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (150), Expect = 3e-14
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAP 112
           ++A+Y +    D+ L + +G    V        W +   Q     G  P NY+ P
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITP 55

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 4e-10
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQSD 170
           F  +  +  + +  L +  G+ + V        W +   Q     G  P++++   +
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPVN 57

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 4e-14
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
             A + +K   +DEL + +G +  VT   + GW++GT     R+G FP NYV  
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT--LNGRTGWFPSNYVRE 64

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 1e-12
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +    +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP+++++
Sbjct: 14  KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVR 63

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 6e-14
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERC----QDGWFKGTSQRTQRSGVFPGNYVAPAK 114
           Y A+Y +K +  +EL +       + E         W+    +   + G  P NY+   +
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSNYIRKTE 73

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 2e-10
 Identities = 7/57 (12%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMK 167
           +  +  +   +  EL +     + + + +D      W+    +  G+ G  P+++++
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSNYIR 70

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 6e-14
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            E IA Y +    + +L   +G V T+    +D  +     +  R G+ P NYV  
Sbjct: 7   TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 62

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
           P+   CI    +   +E +L    GD++  V   +D  WYK    + GR G+ PA+++++
Sbjct: 4   PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQK 62

Query: 169 SD 170
            +
Sbjct: 63  RE 64

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 2e-13
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
           IA+Y Y+     EL LR    Y + +  +  W++   +     G  P +Y+ 
Sbjct: 2   IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHE-GYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
             +  Y  N   EL LR  +  Y+    +  W++   +  G  G  P+S++ +
Sbjct: 2   IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKN-GHEGYAPSSYLVE 53

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (144), Expect = 3e-13
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 60  IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
            A+Y ++  +D+EL  + G + TV +     W++G + R   +G+FP N+V 
Sbjct: 6   RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHR--GTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (140), Expect = 1e-12
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
           + R +  +    + EL  + G+LI V    D  W++G       TGLFP++F
Sbjct: 4   RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNF 53

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (145), Expect = 3e-13
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQR--------T 99
           P F+ +  A + Y     DEL+L+ G V  V          +GW  G  +          
Sbjct: 9   PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 68

Query: 100 QRSGVFPGNYV 110
           +  GVFP N+ 
Sbjct: 69  KCRGVFPENFT 79

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQR--------TGRT 158
             K +    Y      EL+L+ GD++ V        +D+GW  G  +             
Sbjct: 12  MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 71

Query: 159 GLFPASFMK 167
           G+FP +F +
Sbjct: 72  GVFPENFTE 80

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 3e-13
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
           E IA Y +K   DDEL  +RG +  V     D  W+K   +   + G  P NY+
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKA--ELNGKDGFIPKNYI 53

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 120 PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +   ++ EL  + GD++ V +++ D  WYK  L   G+ G  P ++++
Sbjct: 8   DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE 54

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 4e-13
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ---RTQRSGVFPGNYV 110
                 Y     ++L L  G +  + ++   GW++G  Q   + ++ G FP ++V
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 5e-11
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFMK 167
           +    Y  +   +L L  G LI + KK   GW++G LQ   +  + G FPAS +K
Sbjct: 11  QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 1e-12
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQD--GWFKGTSQRTQRSGVFPGNYVAP 112
              +YP+    ++EL   +G    V E+ ++   W+K  + R Q  G+ P NYV  
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV-GLVPKNYVVV 63

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 4e-10
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFMK 167
           + + P+   +E EL    G+ + V +K ++   W+K    R G+ GL P +++ 
Sbjct: 10  QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVV 62

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-12
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
           +Y A+Y YK +++++++L  G + TV +                 + GW  G ++ T   
Sbjct: 5   QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 64

Query: 103 GVFPGNYV 110
           G FPG YV
Sbjct: 65  GDFPGTYV 72

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-11
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 158
           ++R +  Y    E +++L +GD++ V+K                 + GW  G  + TG  
Sbjct: 5   QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 64

Query: 159 GLFPASFMK 167
           G FP ++++
Sbjct: 65  GDFPGTYVE 73

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 2e-12
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
            +  A+  +  +KD+ L   +  + TV E  Q+ W+ G        G FP +YV  
Sbjct: 11  LKAQALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHG--GRGWFPKSYVKI 63

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 9e-11
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           K + +  +    +  L     D+I V  ++ + W+ G +   G  G FP S++K
Sbjct: 12  KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVH--GGRGWFPKSYVK 62

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 53  PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVA 111
            T   +  A+Y  K + D EL    G+V+       + GW +GT     ++G+ P NYV 
Sbjct: 7   GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT--LNGKTGLIPENYVE 64

Query: 112 P 112
            
Sbjct: 65  F 65

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 6e-11
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
           K + +       + EL    G +          GW +GTL   G+TGL P ++++
Sbjct: 12  KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVE 64

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 3e-12
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKD-DELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYV 110
              I+P+    +   L   +G V T+     +DGW  G    T+  G FP +Y 
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 2e-11
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 114 KFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
           K + I P+   N++  L    GD++ +    + DGW  G    T   G FP+S+ K
Sbjct: 9   KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 4e-12
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQD---GWFKGTSQRTQRSGVFPGNYVAP 112
             A++ Y+PQ DDEL ++ G   T+  R  +    W+        + G  P N +  
Sbjct: 7   IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR--LNDKEGYVPRNLLGL 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 6e-10
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDD---GWYKGTLQRTGRTGLFPASFMK 167
               +  Y P ++ EL ++ GD + +  + D+    W+   L    + G  P + + 
Sbjct: 6   VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLG 60

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (135), Expect = 6e-12
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
           P+ +A+Y +  ++  +L  R+G V T+ ++        T +   R G+FP NYV
Sbjct: 2   PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 55

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (120), Expect = 7e-10
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMK 167
           K   +  +      +L  R GD+I + KK D  + W+ G +   GR G+FPA++++
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVE 56

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-11
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y A+YP++ +  DE+    G +  V E+                G FP NYV  
Sbjct: 8   YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMK 167
            +R + P+   +  E+    GD+I V +K     GW  G+    G  G FP ++++
Sbjct: 7   GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVE 60

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 4e-11
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 58  EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
            Y+AI  Y   + DE+ L  G    V  +  DGW+    ++   +G FP  Y+
Sbjct: 2   PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYL 52

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
            +  I  Y      E+ L  G+ + V  K  DGW+    ++   TG FP+ +++
Sbjct: 2   PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQ 53

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (127), Expect = 6e-11
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 61  AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT-SQRTQRSGVFPGNYV 110
            +Y Y  + DDE+ +  G   ++  R     +    +  T  +G+ P  Y+
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 54

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (107), Expect = 6e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           + +  Y    + E+ +  GD I +  +    GW K     TG TGL P ++++
Sbjct: 3   KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (125), Expect = 2e-10
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 53  PTFVPEYIAIYPYKPQ-KDDELELRRGSVYTVTERC-----QDGWFKGTSQRTQRSGVFP 106
           P+ +    A+Y + P+  + E+ L++G +  +  +         W+K  + +    G  P
Sbjct: 2   PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIP 60

Query: 107 GNYV 110
            NY+
Sbjct: 61  YNYI 64

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (115), Expect = 5e-09
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 116 RCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFMK 167
           R +  + P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P ++++
Sbjct: 9   RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 65

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
           Y AI  Y+     E+ L  G V  V E+ + GW+    Q   + G  P +++ P
Sbjct: 5   YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLEP 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 2e-08
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
            +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  PASF++  D
Sbjct: 4   TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLEPLD 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 6e-10
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
             + Y +  +   EL + +  V  + +  +  W       +  SG  P N +   +
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVR--NASGDSGFVPNNILDIMR 57

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 3e-07
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
           +    +   +  EL +   D++ +   R   W       +G +G  P + + 
Sbjct: 5   KSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVR--NASGDSGFVPNNILD 54

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 56  VPEYIAIYPYKPQK------DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
           V   +A Y Y P        + EL L  G    V     +  F        + G+ P N+
Sbjct: 17  VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNF 76

Query: 110 VAP 112
           V  
Sbjct: 77  VDF 79

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 7e-08
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 94  GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
           GTS++     V     VA   +        N E EL L  G  +YV+   D+  +     
Sbjct: 7   GTSKQRYSGKV--HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL 64

Query: 154 RTGRTGLFPASFMK 167
             G+ GL P++F+ 
Sbjct: 65  LDGQRGLVPSNFVD 78

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 48.8 bits (116), Expect = 3e-09
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKD 70
           C +CL+     S  LPC H FC  C+   +  +    CP C   V   +       +  
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVESVVHTIESDSEFG 64

Query: 71 DEL 73
          D+L
Sbjct: 65 DQL 67

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 42  SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWF--------- 92
           +  K     EC   +   +A+  Y       L + RG V  V  + +             
Sbjct: 7   ADRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQG 66

Query: 93  KGTSQRTQRSGVFPGNYV 110
                   R G FP + V
Sbjct: 67  DYYGDLAARLGYFPSSIV 84

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQ------RTGRTGLFPASFM 166
             +  Y       L +  G ++YV  K       ++ G++Q         R G FP+S +
Sbjct: 25  VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 84

Query: 167 K 167
           +
Sbjct: 85  R 85

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (112), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 57  PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG----TSQRTQRSGVFPGNYVAP 112
                I  Y   K++E+ + +G V  V    Q          +       G  PG+ +AP
Sbjct: 8   STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 6e-06
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 4/58 (6%)

Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG----TLQRTGRTGLFPASFMK 167
               I  Y    E E+ +  G+++ V               +       G  P S + 
Sbjct: 9   TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA 66

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 6e-08
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 61  AIYPYKPQKDD-----ELELRRGSVYTVTERCQDGWFKG----TSQRTQRSGVFPGNYVA 111
           A++ Y   KD       L  R G V  V +   + W++     +   T   G  P     
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 112 PAK 114
             +
Sbjct: 66  ERR 68

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTL----QRTGRTGLFPASF 165
                 L  R GD+++V    D+ W++         T   G  P+  
Sbjct: 17  GFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECPTFVPE 58
          +  +LEC +CL+ +        C H FCK C+ ++++  K   +CP C   + +
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFMKQS 169
           P     +     D ++V +K ++ W+ G L +     G  P+    ++
Sbjct: 39  PVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLEN 86

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP 57
            L C  C        K+LPC HT C  CLE          CP C    P
Sbjct: 5  QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLEASGMQ-----CPICQAPWP 48

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 59  YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG--TSQRTQRSGVFPGNYVAPAK 114
           + A   +   +D ++ L  G +  V ++      +           G    +++ P  
Sbjct: 20  FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 3e-07
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
              + C +C   L        C+H FC+ C+   +       CP C
Sbjct: 20 FVKSISCQICEHIL-ADPVETSCKHLFCRICILRCLKVMGS-YCPSC 64

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 9e-07
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 7  NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          +    C +C +      K+ PC H  C  CL     S  +  CP C
Sbjct: 21 STFQLCKICAEND-KDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFC 64

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          L  LL CS C + L     +  C+H FC  C+ + + +   +     
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 39.9 bits (93), Expect = 5e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 6  LNDLLECSVCLDRLDTSSKV---LPCQHTFCKKCLEEIVSSHKELRCPEC 52
          ++D +EC+VCL  L+   +      C H F  +C++  + SH    CP C
Sbjct: 2  MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLC 49

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASF 165
              P     +     D +++ +K ++ W+ G L +     G  P+  
Sbjct: 38  EDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPL 84

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 9e-06
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 10 LECSVCLDRLDTSSKV---LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
          +EC +C++ L+          C +  C+ C   I  + +   CP C    PE
Sbjct: 1  VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPE 51

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 7/56 (12%)

Query: 116 RCIVPYPPN-------SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 164
           R  V Y              +     D +++ +K  + W+ G L + G    F  S
Sbjct: 27  RTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPS 82

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 34.1 bits (77), Expect = 7e-04
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 8  DLLECSVCLDRLD----TSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          D+  C +C + L      +           + CL   ++  +   C  C
Sbjct: 5  DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 8  DLLECSVCLDRL----DTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          D   C  C             V  C HT C+ C++ +        CPEC
Sbjct: 2  DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPEC 49

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 8/54 (14%)

Query: 7  NDLLECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPEC 52
          +    C +CL          +  CQ  FC  CL++ V           + CP+ 
Sbjct: 3  SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.8
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.67
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.67
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.67
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.67
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.66
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.65
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.65
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.65
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.64
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.64
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.64
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.64
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.64
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.64
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.64
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.62
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.61
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.59
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.58
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.58
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.58
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.58
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.58
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.57
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.57
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.57
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.56
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.56
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.56
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.56
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.56
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.55
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.55
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.55
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.55
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.54
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.54
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.54
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.54
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.53
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.53
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.53
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.53
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.53
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.52
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.52
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.52
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.52
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.52
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.52
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.51
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.51
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.51
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.51
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.51
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.5
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.49
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.49
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.48
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.48
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.47
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.45
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.44
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.43
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.43
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.43
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.42
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.42
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.41
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.4
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.39
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.39
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.39
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.39
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.38
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.38
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.37
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.37
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.35
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.35
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.35
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.34
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.34
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.34
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.34
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.34
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.33
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.32
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.31
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.31
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.28
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.28
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.27
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.25
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.25
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.24
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.22
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.22
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.21
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.07
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.95
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.81
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.78
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.74
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	97.29
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	96.6
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.55
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	94.16
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	93.55
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	93.5
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.82
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	91.72
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	91.52
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	91.22
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	90.74
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	90.0
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	89.23
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.1
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	87.97
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	86.81
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.6
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	86.09
d1wd2a_	60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	84.77
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	84.68
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	84.1
d2o35a1	79	Hypothetical protein SMc04008 {Rhizobium meliloti	83.67
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	83.6
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	82.68
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	82.19
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	81.29
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	80.76

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-20  Score=111.07  Aligned_cols=71  Identities=34%  Similarity=0.657  Sum_probs=64.2

Q ss_pred             CCCccCcCCCccccCC---------------cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEec
Q psy9669          98 RTQRSGVFPGNYVAPA---------------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP  162 (173)
Q Consensus        98 ~~~~~G~~p~~~v~~~---------------~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P  162 (173)
                      .+|+.|+||++|++.+               +++++|+|.++..+||+|++||+|.|+++.+++||.++..  |+.|+||
T Consensus         5 ~~G~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~--g~~G~~P   82 (98)
T d1udla_           5 SSGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLFP   82 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSS--SCBCCEE
T ss_pred             CCCceeeEcccceeECCCcccccCCCCCCccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEEC--CeEEEEc
Confidence            5689999999999854               3788999999999999999999999999989999999975  9999999


Q ss_pred             CCCeEEec
Q psy9669         163 ASFMKQSD  170 (173)
Q Consensus       163 ~~~v~~~~  170 (173)
                      .+||+.++
T Consensus        83 ~nyVe~~~   90 (98)
T d1udla_          83 SNYVKMTT   90 (98)
T ss_dssp             TTSEEECC
T ss_pred             hHHEEECC
Confidence            99998764

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=7.4e-17  Score=85.84  Aligned_cols=56  Identities=27%  Similarity=0.522  Sum_probs=52.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|++||++.+++..+++||.++..++|++|+||++||+.++
T Consensus         3 ~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            57899999999999999999999999999999999998778999999999998764

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.6e-17  Score=85.02  Aligned_cols=53  Identities=32%  Similarity=0.748  Sum_probs=49.5

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|++||++.++...+++||.++..  |+.|+||.+||+++
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           4 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC--CeEEEEEHhHEEEC
Confidence            478999999999999999999999999888999999987  99999999999875

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=7.5e-17  Score=85.27  Aligned_cols=53  Identities=28%  Similarity=0.627  Sum_probs=49.8

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|.+||++.+++..+++||.++..  |+.|+||++||+++
T Consensus         4 arAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yve~i   56 (57)
T d1utia_           4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPM   56 (57)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC--CcEEEEEHHHEEEc
Confidence            578999999999999999999999999989999999986  99999999999975

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.67  E-value=8.2e-17  Score=85.43  Aligned_cols=54  Identities=28%  Similarity=0.692  Sum_probs=50.5

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|.+||++.|+...+++||.++..  |+.|+||++||++++
T Consensus         5 ~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yvep~n   58 (58)
T d1sema_           5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVCPYN   58 (58)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET--TEEEEEEGGGEEECC
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC--CeEEEEEhhhEEECc
Confidence            578999999999999999999999999999999999986  999999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=1.2e-16  Score=83.85  Aligned_cols=53  Identities=23%  Similarity=0.562  Sum_probs=49.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|++||++.+++..+++||.++..  |+.|+||++||+++
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~i   55 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEEC--CeEEEEeHHHEEEC
Confidence            468899999999999999999999999999999999986  99999999999874

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-16  Score=86.99  Aligned_cols=58  Identities=22%  Similarity=0.548  Sum_probs=53.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      ++++++|.++.+++|+|++||++.+++...++||.++...+|+.||||++||++.+++
T Consensus         5 ~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECccC
Confidence            5789999999999999999999999998888999999877889999999999998753

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-17  Score=95.18  Aligned_cols=52  Identities=21%  Similarity=0.529  Sum_probs=44.3

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +++.+.++|+||.+.+ ..|++++|||+||..||.+|+..++ ..||+||.++.
T Consensus        18 ~d~~~~l~C~IC~~~~-~~pv~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~p~~   69 (86)
T d1rmda2          18 AHFVKSISCQICEHIL-ADPVETSCKHLFCRICILRCLKVMG-SYCPSCRYPCF   69 (86)
T ss_dssp             HHHHHHTBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred             hhhccCcCCccCCcch-hcceecCCCChhhHHHHHHHHhhCC-CcCcccCCCCC
Confidence            3555778999999999 7899999999999999999997533 47999998764

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=82.27  Aligned_cols=51  Identities=27%  Similarity=0.488  Sum_probs=47.7

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ++++++|.++.+++|+|.+|++|.++++.++|||.++..  |+.|+||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~--g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--DVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESS--SCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEEC--CcEeEecHHhCC
Confidence            468899999999999999999999999999999999976  999999999985

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.1e-17  Score=86.49  Aligned_cols=56  Identities=29%  Similarity=0.683  Sum_probs=51.3

Q ss_pred             CcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ..++++++|.++.+++|+|.+||+|.+++..+++||.++..  |+.|+||++||++..
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~--g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECS--SCEEEECGGGCCCSC
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC--CcEEEEchHHeEECC
Confidence            35788999999999999999999999999988999999986  999999999998764

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=83.77  Aligned_cols=55  Identities=20%  Similarity=0.503  Sum_probs=50.6

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|++||++.++.+.+++||.++...+|+.|+||++||+++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            4688999999999999999999999999888999999876899999999999875

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.7e-16  Score=84.20  Aligned_cols=53  Identities=30%  Similarity=0.672  Sum_probs=49.3

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      +++++++|.++.+++|+|++||++.+++..+++||.++..  |+.|+||.+||+.
T Consensus         4 r~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yV~~   56 (58)
T d1uj0a_           4 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TEEEEEEGGGEES
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEEC--CeEEEEehHhEee
Confidence            4689999999999999999999999999989999999986  9999999999973

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2e-16  Score=83.68  Aligned_cols=53  Identities=21%  Similarity=0.649  Sum_probs=49.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++|.++.+++|+|++||+|.++.+.+++||.++.. +|+.|+||++||++
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yve~   56 (57)
T d1ckaa_           4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEE
Confidence            578999999999999999999999999989999999976 68999999999986

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.4e-17  Score=97.27  Aligned_cols=53  Identities=26%  Similarity=0.759  Sum_probs=45.0

Q ss_pred             hhcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcc-cccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~-~~~~CP~Cr~~i~   57 (173)
                      +.+++.+.||||++.+ ..|+.++|||+||..||.+|+... +...||+||..+.
T Consensus        16 ~~l~~~l~CpIC~~~~-~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          16 NAMQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHHHHTSCSSSCCCC-SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HhcccCcCCCccCchh-CCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            4567889999999999 788889999999999999998753 3458999997763

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-17  Score=86.20  Aligned_cols=55  Identities=33%  Similarity=0.681  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.+++|+|++||++.++++.+++||.++..  |+.|+||++||++++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~--g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           4 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIPASFLEPLD   58 (58)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEEC--CCCCCCCGGGCCCSS
T ss_pred             EEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEEC--CCCcEEcHhHEEECc
Confidence            3578999999999999999999999999999999999986  999999999998865

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-16  Score=85.15  Aligned_cols=55  Identities=38%  Similarity=0.727  Sum_probs=51.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++++|.++.+++|+|.+||++.++...+++||.++...+|+.|+||++||+.+
T Consensus         6 ~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           6 FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             EECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            6889999999999999999999999999899999999877899999999999864

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.64  E-value=1.9e-16  Score=82.50  Aligned_cols=52  Identities=23%  Similarity=0.488  Sum_probs=48.0

Q ss_pred             eecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       116 ~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      .++++|.++.+++|+|++||++.+++..+++||.++.. +|+.|+||++||++
T Consensus         2 ~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~-~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           2 IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE   53 (53)
T ss_dssp             EESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECT-TSCEEEECGGGEEE
T ss_pred             EEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeC-CCCEEEEeHHHEeC
Confidence            67899999999999999999999999888999999865 78999999999975

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.62  E-value=1.2e-16  Score=88.00  Aligned_cols=49  Identities=31%  Similarity=0.776  Sum_probs=40.7

Q ss_pred             CccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceee
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI   60 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~   60 (173)
                      -+|+||++.+..+.+.++|||.||..|+.+|+..+  .+||+||..+....
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~i~~~~   54 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCCCEE
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC--CcCCCCCcchHhhc
Confidence            36999999985556778999999999999999864  47999998875433

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=9.2e-16  Score=83.89  Aligned_cols=55  Identities=16%  Similarity=0.412  Sum_probs=50.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.+..+++|+|++||++.++...+.+||.++.. +|+.||||++||++++
T Consensus         5 v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yV~~~~   59 (67)
T d1gl5a_           5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESST
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEEC-CCCEEEEEhHHeEEec
Confidence            578999999999999999999999999988899999865 6899999999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=89.17  Aligned_cols=50  Identities=26%  Similarity=0.623  Sum_probs=42.3

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCcee
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEY   59 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~   59 (173)
                      +...|+||++.+ ..+++++|||.||..||.+|+..+. ..||+||..+...
T Consensus        22 ~~~~C~IC~~~~-~~~~~~~CgH~fC~~Ci~~wl~~~~-~~CP~Cr~~i~~~   71 (79)
T d1fbva4          22 TFQLCKICAEND-KDVKIEPCGHLMCTSCLTSWQESEG-QGCPFCRCEIKGT   71 (79)
T ss_dssp             CTTBCTTTSSSB-CCEECSSSCCEECHHHHHHHHHTTC-CSCTTTCCCCCCC
T ss_pred             CCCCCccCCCcC-CCeEEeCCCCeeeHHHHHHHHHHCc-CcCCCCCcCccCC
Confidence            345799999999 7899999999999999999997533 4799999887543

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.5e-15  Score=80.25  Aligned_cols=54  Identities=13%  Similarity=0.406  Sum_probs=47.1

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCC-CeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++++|.++.+++|+|++||++.++.+..+ +||.++..  |+.||||++||++++
T Consensus         3 ~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~--g~~G~~P~~yv~~vd   57 (57)
T d1opka1           3 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECS--SCEEEEEGGGEEESS
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEEC--CCEeEEchhheEECC
Confidence            4789999999999999999999998876554 67888875  899999999999874

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-15  Score=82.05  Aligned_cols=57  Identities=19%  Similarity=0.439  Sum_probs=50.0

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEeccc
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~~  172 (173)
                      ++++++|.++.+++|+|++||++.+++. .++||.++...+|+.|+||.+||++++.+
T Consensus         7 vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           7 VVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             EEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            5789999999999999999999999986 56788887766799999999999998753

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.58  E-value=5.2e-16  Score=81.38  Aligned_cols=50  Identities=36%  Similarity=0.838  Sum_probs=40.4

Q ss_pred             hcccCCccccccccccC--CCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           5 TLNDLLECSVCLDRLDT--SSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~--~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +++++.+|+||++.+..  ....+ .|+|.||..|+.+|+..+  .+||+||..+
T Consensus         1 a~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~i   53 (55)
T d1iyma_           1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPLCRLTV   53 (55)
T ss_dssp             CCCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--CSCSSSCCCS
T ss_pred             CCCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC--CcCCCCCCEe
Confidence            36788899999998842  34444 699999999999999864  4799999765

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.3e-16  Score=89.05  Aligned_cols=51  Identities=16%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++.+++.||||+++| ..|++++|||+||..||.+|+...+ ..||.|+..+.
T Consensus         3 eiP~~l~CpIc~~l~-~dPv~~~cGhtfc~~ci~~~l~~~~-~~cP~c~~~l~   53 (80)
T d2c2la2           3 DIPDYLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLT   53 (80)
T ss_dssp             CCCSTTBCTTTCSBC-SSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCC
T ss_pred             CCCccccCcCcCchh-hhhcccCCcCeecHHHHHHHHhcCC-ccCCCcccccc
Confidence            467899999999999 7889999999999999999997543 57999998764

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.6e-16  Score=86.13  Aligned_cols=55  Identities=35%  Similarity=0.784  Sum_probs=51.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|++||+|.|+...+++||.++..  |+.||||.+||+.++
T Consensus        12 ~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~i~   66 (76)
T d1ujya_          12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEET--TEEEEECTTTSEECC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEEC--CcEEEEchHHEEECC
Confidence            4689999999999999999999999999888999999986  999999999999864

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.2e-15  Score=83.86  Aligned_cols=58  Identities=22%  Similarity=0.489  Sum_probs=51.5

Q ss_pred             cCCcceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       111 ~~~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      ...+++++++|.++.+++|+|++||+|.|++. .++||.++..  |+.||||.+||+.++.
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~--g~~G~fP~~yve~i~~   66 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEEST--TCCCEEEGGGEEECCC
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEEC--CcEEEEchhhEEECCC
Confidence            34568999999999999999999999999987 5689999876  9999999999998753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=4.6e-16  Score=88.08  Aligned_cols=52  Identities=10%  Similarity=0.400  Sum_probs=45.3

Q ss_pred             hcccCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ++.+++.||||+++| ..|++++|||+||+.||.+|+..+. ..||.|+..+..
T Consensus         4 eiP~~l~CpIc~~~m-~dPV~~~cgh~fc~~ci~~~~~~~~-~~cP~~~~~l~~   55 (78)
T d1t1ha_           4 EFPEYFRCPISLELM-KDPVIVSTGQTYERSSIQKWLDAGH-KTCPKSQETLLH   55 (78)
T ss_dssp             CCSSSSSCTTTSCCC-SSEEEETTTEEEEHHHHHHHHTTTC-CBCTTTCCBCSS
T ss_pred             CCCccCCCcCcCchh-hCceEccCCCcchHHHHHHHHHHCC-CCCCcccccCCc
Confidence            477899999999999 8899999999999999999998643 479999987643

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.8e-15  Score=79.47  Aligned_cols=54  Identities=30%  Similarity=0.684  Sum_probs=48.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      +++++++|.++.++||+|++||++.++...  .++||.++..  |++|+||.+||+.+
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~--g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEET--TEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEEC--CcEEEEcHHHEEEC
Confidence            468999999999999999999999999876  3579999986  99999999999864

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.1e-15  Score=81.16  Aligned_cols=57  Identities=30%  Similarity=0.550  Sum_probs=52.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      |.++|+++|.++..++|+|.+||.+.|++..+++||.++...+++.|+||++||+..
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            346889999999999999999999999999999999999877899999999998753

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6e-15  Score=83.70  Aligned_cols=57  Identities=33%  Similarity=0.594  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeC---CCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~---~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..++||+|++||+|.|+++.+++||.++..   .+++.||||.+||+.++
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~   68 (80)
T d1ue9a_           9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             EEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECC
Confidence            4789999999999999999999999999989999999863   25679999999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9e-16  Score=79.66  Aligned_cols=47  Identities=26%  Similarity=0.680  Sum_probs=38.0

Q ss_pred             Ccccccccccc---CCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669          10 LECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus        10 ~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++||||++.+.   ..++.++|||.||..|+.+|+...+ .+||+||.++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~-~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC-CBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC-CCCCccCCcCC
Confidence            57999999874   2345668999999999999998543 47999998764

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=80.33  Aligned_cols=55  Identities=35%  Similarity=0.694  Sum_probs=50.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||.+.|++..+++||.++.  .|+.|+||++|++++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEEHHHEEEc
Confidence            4578999999999999999999999999999999999995  489999999999864

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.3e-15  Score=78.82  Aligned_cols=53  Identities=26%  Similarity=0.553  Sum_probs=46.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      ++++++|.++.+++|+|++||++.++...+ ++||.++...+|++|+||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            689999999999999999999999988764 56777776667999999999986

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=79.34  Aligned_cols=52  Identities=25%  Similarity=0.646  Sum_probs=42.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeE
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK  167 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~  167 (173)
                      +++++++|.++..++|+|++||++.++... +++||.++..  |+.|+||++||+
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~--g~~G~vP~nyve   54 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNYIE   54 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESS--SCEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEEC--CcEEEEehhhEE
Confidence            478999999999999999999999877654 5688888865  999999999996

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.4e-16  Score=81.78  Aligned_cols=44  Identities=39%  Similarity=0.944  Sum_probs=37.8

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.++|+||++.+ ..+++++|||+||..||.++     ..+||+||..++
T Consensus         5 ~~l~C~IC~~~~-~~p~~lpCgH~fC~~Ci~~~-----~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSC-BCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred             CCCCCcccCccc-CCCEEecCCCHHhHHHHHcC-----CCcCcCCCCccc
Confidence            457999999999 78899999999999999753     357999998774

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.1e-15  Score=81.28  Aligned_cols=57  Identities=23%  Similarity=0.501  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..++||+|++||+|.|+... +++||.++.. +|+.|+||.+||+..+.
T Consensus         8 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~-~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           8 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREG   65 (71)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEECCC
T ss_pred             EEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeC-CCCEEEEchHHeEEccc
Confidence            478999999999999999999999988765 5678888875 78999999999998753

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-15  Score=79.82  Aligned_cols=56  Identities=27%  Similarity=0.585  Sum_probs=51.1

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.++..++|+|.+||++.|+++.+++||.++.  .++.|+||++|++++
T Consensus         2 l~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~--~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           2 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEPL   57 (58)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCCS
T ss_pred             ceEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEE--CCCCcEEcHhHEEEC
Confidence            34678999999999999999999999999999999999995  489999999999875

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.2e-15  Score=81.21  Aligned_cols=56  Identities=23%  Similarity=0.493  Sum_probs=49.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCC--CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++.+++|+|.+||++.|+...+  ++||.++.. +|+.|+||++||+.+.
T Consensus         8 ~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~-~G~~G~vP~~yv~~~~   65 (71)
T d1u5sa1           8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEECC
T ss_pred             EEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEEC-CCCEEEEChHHEEECC
Confidence            3689999999999999999999999998653  489999876 6899999999999874

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.6e-16  Score=83.83  Aligned_cols=56  Identities=21%  Similarity=0.585  Sum_probs=50.9

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++.+++|+|++||++.++...+.+||.++.. +|+.|+||++||++++
T Consensus        10 ~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_          10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             EEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCSC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEECc
Confidence            5688999999999999999999999999888899999865 6899999999998864

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.9e-15  Score=82.07  Aligned_cols=57  Identities=28%  Similarity=0.510  Sum_probs=48.8

Q ss_pred             cceecccCCCC-CCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPN-SEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~-~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.+. .+++|+|++||+|.|+.+ ..++||.++...+++.|+||.+||+.++
T Consensus         9 ~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~   67 (72)
T d1spka_           9 KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS   67 (72)
T ss_dssp             EEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECS
T ss_pred             EEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECC
Confidence            56899999985 567899999999999865 4568999998767899999999999875

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.1e-15  Score=79.52  Aligned_cols=55  Identities=24%  Similarity=0.658  Sum_probs=50.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++.+++|+|.+||++.|++..+++||.++.  .|+.|+||++||++.
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCS
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            4678999999999999999999999999999999999995  589999999999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.8e-15  Score=78.86  Aligned_cols=54  Identities=17%  Similarity=0.371  Sum_probs=48.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      ++++|+|.++..++|+|.+||++.+++.. ++||.++.. +|+.|+||++||+.+.
T Consensus         4 a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~-~g~~G~~P~nyve~i~   57 (59)
T d1i07a_           4 AKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNA-SGDSGFVPNNILDIMR   57 (59)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECT-TSCEEEEEGGGEEEEC
T ss_pred             EEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEc-CCCEEEECHHHeEECC
Confidence            67899999999999999999999998874 579998876 6899999999999875

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.2e-15  Score=90.30  Aligned_cols=55  Identities=27%  Similarity=0.472  Sum_probs=51.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+...++|+|.+||+|.|+++.++|||.++..  |+.||||.+||+.+.
T Consensus        16 ~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~--g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--DVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET--TEEEEEEGGGEEETT
T ss_pred             EEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEEC--CeEEEEehhhEEECC
Confidence            4689999999999999999999999999999999999986  999999999998763

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-15  Score=80.62  Aligned_cols=56  Identities=34%  Similarity=0.698  Sum_probs=51.7

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++|+++|.++..++|+|.+||.+.|+.+.+++||.++...+++.|+||++|++.
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~   59 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA   59 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEE
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEE
Confidence            45789999999999999999999999999999999999987789999999999875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=83.13  Aligned_cols=49  Identities=29%  Similarity=0.562  Sum_probs=38.4

Q ss_pred             cCCccccccccccC----CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           8 DLLECSVCLDRLDT----SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         8 ~~~~C~iC~~~~~~----~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++..||||++.+..    ..++++|||.||..||.+|+.... ..||+||..+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-GNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-SSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc-CCCCCCCcCcc
Confidence            46799999986532    235678999999999999997533 46999998764

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=81.75  Aligned_cols=58  Identities=28%  Similarity=0.712  Sum_probs=53.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +..++|+++|.++..++|+|.+||.+.++++.+++||.++...+|+.|+||++|+++.
T Consensus         2 ~~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             eeEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            4567899999999999999999999999998888999999877889999999999865

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=78.85  Aligned_cols=53  Identities=38%  Similarity=0.846  Sum_probs=48.6

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ++|+++|.++..++|+|.+||.+.|+++.+++||.++.  .|+.|+||++|++++
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           4 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHhHEEEC
Confidence            47899999999999999999999999998999999996  489999999999763

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.6e-15  Score=79.03  Aligned_cols=55  Identities=29%  Similarity=0.740  Sum_probs=50.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      .++|+++|.++.+++|+|.+||.+.++++.+++||.+....+++.|+||++|+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~p   56 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEE
Confidence            3679999999999999999999999999988999999987789999999999875

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-15  Score=85.38  Aligned_cols=57  Identities=28%  Similarity=0.666  Sum_probs=50.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC---------------CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---------------~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++|+|.+...++|+|++||+|.|+...               ++|||.|+..++|+.|+||++||+.+.
T Consensus         5 ~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~   76 (83)
T d1phta_           5 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   76 (83)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             EEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcC
Confidence            478999999999999999999999998642               468999998768999999999998874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=90.02  Aligned_cols=49  Identities=33%  Similarity=0.703  Sum_probs=41.2

Q ss_pred             hhcccCCccccccccccCCCee-ecCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~-~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.+++.++|+||.+.| ..|+. .+|||+||..||.+|+..    .||.||..+.
T Consensus        17 ~~l~~~l~C~IC~~~~-~~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~~~~   66 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNIL-REPVCLGGCEHIFCSNCVSDCIGT----GCPVCYTPAW   66 (97)
T ss_dssp             HHHHHTTSCSSSCSCC-SSCBCCCSSSCCBCTTTGGGGTTT----BCSSSCCBCS
T ss_pred             HhhhhcCCCccCCchh-hcCceeCCCCCchhHHHHHHHHhc----cccccCCcCc
Confidence            5678899999999999 56665 589999999999999853    4999997653

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-14  Score=77.90  Aligned_cols=55  Identities=20%  Similarity=0.517  Sum_probs=47.5

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      .++++++|.++.+++|+|++||+|.|++.. ++||.++...+|+.|+||++||++.
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~~P~~yV~~a   62 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEc-CCCEEEEeccCCeEeEEcHHHEEeC
Confidence            468899999999999999999999999885 4577776655799999999999863

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.52  E-value=4.4e-15  Score=78.63  Aligned_cols=54  Identities=35%  Similarity=0.784  Sum_probs=49.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|++..+++||.++.  .++.|+||++|++++
T Consensus         4 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yvep~   57 (58)
T d1sema_           4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEEhhhEEEC
Confidence            468999999999999999999999999999999999995  489999999999865

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=7.4e-15  Score=80.11  Aligned_cols=54  Identities=26%  Similarity=0.592  Sum_probs=46.6

Q ss_pred             ceecccCCCCCCc-ceeecCCCEEEEEEcCC-----CCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         115 FRCIVPYPPNSEY-ELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       115 ~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~-----~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ++++|+|.++..+ +|+|++||++.|+.+.+     .+||.++.. +|+.|+||++||+.+
T Consensus         8 ~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~-~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           8 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             EEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeC-CCCEEEEEHHHEEEC
Confidence            6899999998765 89999999999988653     489999875 689999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=9e-15  Score=81.55  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCC----CCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~----~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|.+||+|.|+++.+++||.++...    .|+.||||.+||+++.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~   69 (74)
T d1wfwa_           9 TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFS   69 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCC
T ss_pred             EEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECC
Confidence            46889999999999999999999999999889999998753    2689999999999874

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=9.9e-15  Score=79.79  Aligned_cols=52  Identities=27%  Similarity=0.480  Sum_probs=43.7

Q ss_pred             cccCCCCCCcceeecCCCEEEEEEc-CCCCeeEEEeCCCCcEEEecCCCeEEe
Q psy9669         118 IVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFMKQS  169 (173)
Q Consensus       118 ~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~g~~G~~P~~~v~~~  169 (173)
                      ..++.++..++|+|++||+|.|++. .++|||.++...+|+.|+||++||++.
T Consensus        16 ~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          16 IPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             SSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            3444556778999999999999875 467999999876799999999999985

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.3e-15  Score=76.81  Aligned_cols=51  Identities=31%  Similarity=0.641  Sum_probs=47.4

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      ++++++|.++.+++|+|.+||++.|+++.+++||.++  ..++.|+||++|++
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~--~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR--KDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEE--SSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEE--ECCcEeEecHHhCC
Confidence            5789999999999999999999999999999999999  45899999999974

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=3.6e-15  Score=78.17  Aligned_cols=52  Identities=25%  Similarity=0.637  Sum_probs=48.3

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ++|+++|.++.+++|+|.+||.+.|+++.+++||.++.  .|+.|+||++|+++
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   54 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKK   54 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEeHHHEEE
Confidence            57899999999999999999999999999999999995  58999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.1e-15  Score=77.59  Aligned_cols=53  Identities=15%  Similarity=0.586  Sum_probs=48.9

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ++|+++|.++..++|+|.+||++.|+.+.+++||.++. ..|+.|+||++|+++
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEC-TTSCEEEEEGGGEEC
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEE-CCCCEEEEcHHHeEE
Confidence            57899999999999999999999999999999999984 568999999999975

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.3e-15  Score=78.68  Aligned_cols=52  Identities=21%  Similarity=0.517  Sum_probs=46.4

Q ss_pred             ceecccCCCCCCcceeecCCCEEEEEEcCC---CCeeEEEeCCCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~---~~w~~~~~~~~g~~G~~P~~~v~~  168 (173)
                      ++++++|.++.++||+|++||++.++...+   +|||.++..  |+.|+||++||+.
T Consensus         7 v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~--g~~G~~P~~yv~~   61 (63)
T d1ycsb2           7 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN--DKEGYVPRNLLGL   61 (63)
T ss_dssp             EEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEET--TEEEEEEGGGEEC
T ss_pred             EEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEEC--CeEEEEchHHhEe
Confidence            578999999999999999999999987653   479999986  9999999999975

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.1e-15  Score=81.09  Aligned_cols=55  Identities=29%  Similarity=0.709  Sum_probs=49.2

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.+..+++|+|++||+|.|+.+ +++||.++..  ++.||||.+||++++.
T Consensus        10 ~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~--g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_          10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--DRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECST--TCCEEECGGGCEECCC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEEC--CcEEEEchhhEEECCC
Confidence            46789999999999999999999999977 5689999975  9999999999998763

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.1e-15  Score=81.67  Aligned_cols=55  Identities=25%  Similarity=0.559  Sum_probs=49.0

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      +++++++|.++..++|+|.+||+|.++... +++||.++..  |+.|+||.+||+.++
T Consensus        12 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~--g~~G~~P~~yve~i~   67 (72)
T d1ugva_          12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVEFLS   67 (72)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESS--SCEEEEEGGGEEECC
T ss_pred             EEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeC--CCEEEEchHHEEECC
Confidence            578999999999999999999999888765 4679999876  999999999999875

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.1e-14  Score=79.70  Aligned_cols=56  Identities=11%  Similarity=0.462  Sum_probs=49.7

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC----CCCeeEEEeCCCCcEEEecCCCeEEecc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFMKQSDF  171 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~----~~~w~~~~~~~~g~~G~~P~~~v~~~~~  171 (173)
                      .++++++|.++.++||+|++||+|.|+++.    .++||.++..  |+.||||.+||++++.
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~--g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--GKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESS--SCEEEEEGGGEEECCS
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEEC--CCEEEEehhhEEECCC
Confidence            368999999999999999999999999864    3689999965  9999999999998763

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.3e-15  Score=77.77  Aligned_cols=54  Identities=28%  Similarity=0.711  Sum_probs=49.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +.++|+++|.++..++|+|.+||++.|++..+++||.++.  .|+.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEE--CCeEEEEehHhEee
Confidence            3578999999999999999999999999999999999995  48999999999874

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.50  E-value=6.4e-15  Score=76.59  Aligned_cols=51  Identities=25%  Similarity=0.573  Sum_probs=47.2

Q ss_pred             eccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCcccc
Q psy9669          60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        60 ~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      +|+++|.++..++|+|.+||.+.++.+.+++||.++. ..|+.|+||++|++
T Consensus         2 ~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~-~~g~~G~vP~~yv~   52 (53)
T d2rn8a1           2 IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYLV   52 (53)
T ss_dssp             EESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEEC-TTSCEEEECGGGEE
T ss_pred             EEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEe-CCCCEEEEeHHHEe
Confidence            6899999999999999999999999998999999984 67899999999985

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.2e-15  Score=78.80  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             CccccccccccCCCeee-cCCCCCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669          10 LECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~-~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      +.|+||++.+ ..|+.+ .|||+||++||.+|+..++  .||+||.++.
T Consensus         1 l~C~Ic~~~~-~~Pv~~~~cGh~fc~~cI~~~l~~~~--~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVP-RRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCC-SSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred             CCCccCCchH-HhcCccCCCCCcccHHHHHHHHhhcc--CCCccCCcCC
Confidence            5799999999 788777 5999999999999999754  6999998764

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-14  Score=82.55  Aligned_cols=55  Identities=24%  Similarity=0.330  Sum_probs=49.4

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCC----CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.++..+||+|++||+|.|+++.+    ++||.++..  |+.||||.+||+++.
T Consensus        19 ~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~--g~~G~~P~~yv~~~~   77 (92)
T d1ug1a_          19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG--VTKGFVYSSFLKPYN   77 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECS--SSEEEEEGGGEEECC
T ss_pred             EEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEec--ccEEEEEhhhceecC
Confidence            3689999999999999999999999998753    689999976  999999999999864

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-15  Score=82.93  Aligned_cols=56  Identities=20%  Similarity=0.474  Sum_probs=50.1

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++++|.+..+++|+|.+||+|.|++..+++||.++.. +++.|+||++||+++.
T Consensus         8 ~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~fP~~yv~~~~   63 (71)
T d2hspa_           8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG-GKKQLWFPSNYVEEMV   63 (71)
T ss_dssp             CEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCS-SCCSCCEETTTCCSCS
T ss_pred             EEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEEC-CeEEEEEchHHeEEcC
Confidence            4689999999999999999999999999889999999875 5677799999998764

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.5e-14  Score=78.09  Aligned_cols=56  Identities=27%  Similarity=0.608  Sum_probs=50.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+++|.+...++|+|.+||++.|+.+.+.+||.++. ..|+.|+||++||++..
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yV~~~~   59 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEEC-SSSCEEEEETTSEESST
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEE-CCCCEEEEEhHHeEEec
Confidence            468999999999999999999999999998889999984 56899999999998764

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.2e-14  Score=82.17  Aligned_cols=55  Identities=29%  Similarity=0.739  Sum_probs=48.8

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC--CCCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++..+||+|++||+|.|+.+.  +.+||.++..  |+.||||.+||+.+.
T Consensus         7 ~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~--g~~G~~P~~Yve~~~   63 (93)
T d1uffa_           7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEET--TEEEEEETTTEEECC
T ss_pred             EEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeC--CcEEEEchHHEEECC
Confidence            578999999999999999999999999775  4578888875  999999999998764

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-14  Score=78.36  Aligned_cols=58  Identities=29%  Similarity=0.674  Sum_probs=52.3

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .+..++|+++|.++..++|+|.+||++.|+.+.+.+||.+.. ..|+.|+||++|+++.
T Consensus         7 ~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~g~~G~vP~~yv~~~   64 (67)
T d1awwa_           7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBC-TTSCBCCEETTTBCCS
T ss_pred             CCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEE-CCCCEEEEcHHHeEEC
Confidence            456789999999999999999999999999998889999974 5789999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=5.6e-14  Score=74.06  Aligned_cols=54  Identities=22%  Similarity=0.569  Sum_probs=46.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCC-CEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||.+.|+.+..+ +||.++  ..++.|+||++|++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~--~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ--TKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEE--CSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEE--ECCCEeEEchhheEEC
Confidence            46899999999999999999999999987665 577787  4588999999999864

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.5e-14  Score=76.47  Aligned_cols=53  Identities=28%  Similarity=0.474  Sum_probs=43.6

Q ss_pred             ccCCCCCCCccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          61 AIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        61 ~~~~~~~~~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ++.++.++..++|+|.+||+|.|++. .+++||.|+...+|+.|+||++||++.
T Consensus        15 ~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             SSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            33344457788999999999999975 457899999766799999999999874

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=77.97  Aligned_cols=58  Identities=19%  Similarity=0.404  Sum_probs=51.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEe---CCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTS---QRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~---~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||+|.|+.+.+++||.+..   +..++.||||.+||+.+.
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~   68 (80)
T d1ue9a_           8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             CEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECC
Confidence            4578999999999999999999999999999999999985   345678999999998653

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=6e-14  Score=74.22  Aligned_cols=54  Identities=31%  Similarity=0.813  Sum_probs=47.5

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC--CCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      |.++|+++|.++..++|+|.+||.+.|+.+.+  .+||.++.  .|++|+||++|++.
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~--~g~~G~vP~~yve~   57 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVEL   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEE--CCcEEEEcHHHEEE
Confidence            45789999999999999999999999998753  57999985  58999999999874

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.9e-14  Score=79.83  Aligned_cols=57  Identities=28%  Similarity=0.587  Sum_probs=48.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEcC-----CCCeeEEEeCC--------CCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQR--------TGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-----~~~w~~~~~~~--------~g~~G~~P~~~v~~~~  170 (173)
                      +++++|+|.++.+++|+|++||+|.|+...     ++|||.|....        +|+.|+||++||+.++
T Consensus        14 ~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          14 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             EEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            578999999999999999999999998764     36899997641        3579999999999874

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.1e-14  Score=83.85  Aligned_cols=57  Identities=32%  Similarity=0.662  Sum_probs=51.7

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ....++|+|+|.++..++|+|.+||+|.|+++.+++||.++.  .|+.|+||.+||+.+
T Consensus        33 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~nyVe~~   89 (98)
T d1udla_          33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT   89 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--SSCBCCEETTSEEEC
T ss_pred             CccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEE--CCeEEEEchHHEEEC
Confidence            455689999999999999999999999999998999999994  589999999999765

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.2e-13  Score=75.84  Aligned_cols=59  Identities=22%  Similarity=0.260  Sum_probs=51.6

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCC----CCccCcCCCccccCCc
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR----TQRSGVFPGNYVAPAK  114 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~----~~~~G~~p~~~v~~~~  114 (173)
                      ...++++++|.+..+++|+|.+||++.|+++.+++||.++...    .++.||||.+|++++.
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~   69 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFS   69 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCC
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECC
Confidence            3567899999999999999999999999999999999998533    3578999999998763

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.3e-14  Score=73.60  Aligned_cols=52  Identities=35%  Similarity=0.724  Sum_probs=42.4

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCcccc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      .++|+|+|.++..++|+|.+||.+.++.+. +++||.+..  .|+.|+||++|++
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~--~g~~G~vP~nyve   54 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE   54 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES--SSCEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEE--CCcEEEEehhhEE
Confidence            468999999999999999999999987754 567888884  5899999999986

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=7.6e-14  Score=77.18  Aligned_cols=57  Identities=26%  Similarity=0.502  Sum_probs=48.6

Q ss_pred             ceeeccCCCCCC-CccccceecCCEEEEEEE-cCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQ-KDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~-~~~el~~~~g~~v~v~~~-~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+|+|.+. ..++|+|.+||+|.|+.+ ..++||.++.+..++.|+||++||+.+
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i   66 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEEC
Confidence            457899999975 578899999999999865 456799999877889999999999865

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=75.84  Aligned_cols=55  Identities=27%  Similarity=0.509  Sum_probs=49.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+++|.++..++|+|.+||+|.|+++ +++||.++.  .|+.||||.+|++.+
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~--~g~~G~fP~~yve~i   64 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEV--HGGRGWFPKSYVKII   64 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEES--TTCCCEEEGGGEEEC
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEE--CCcEEEEchhhEEEC
Confidence            3468899999999999999999999999988 568999995  589999999999865

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.1e-13  Score=75.38  Aligned_cols=56  Identities=21%  Similarity=0.536  Sum_probs=47.5

Q ss_pred             CceeeccCCCCCCCcc-ccceecCCEEEEEEEcC-----CCEEEEEeCCCCccCcCCCccccC
Q psy9669          56 VPEYIAIYPYKPQKDD-ELELRRGSVYTVTERCQ-----DGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~-el~~~~g~~v~v~~~~~-----~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      +..++|+|+|.++..+ +|+|.+||++.|+++.+     ++||.++. ..|+.|+||++|++.
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~-~~G~~G~~P~nyve~   66 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEI   66 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEC-TTSCEEEEEGGGEEE
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEe-CCCCEEEEEHHHEEE
Confidence            4467899999998765 89999999999998753     48999984 578999999999874

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.1e-14  Score=78.44  Aligned_cols=55  Identities=36%  Similarity=0.661  Sum_probs=50.1

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+|+|.++.+++|+|.+||+|.|+++.+++||.++.  .++.|+||.+|++++.
T Consensus        12 ~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~i~   66 (76)
T d1ujya_          12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEECC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHEEECC
Confidence            467999999999999999999999999998999999995  4899999999998663

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=74.05  Aligned_cols=55  Identities=31%  Similarity=0.643  Sum_probs=48.7

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++.+++|+|.+||.+.|+++ +++||.+.....|+.|+||++|+++.
T Consensus         6 ~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~   60 (65)
T d1qcfa1           6 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   60 (65)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             EEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEEC
Confidence            46789999999999999999999999986 56799888777789999999999865

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=74.18  Aligned_cols=55  Identities=27%  Similarity=0.529  Sum_probs=47.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC---CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~---~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++..++|+|.+||.+.|+.+.+   .+||.++.  .|+.|+||++|++.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~--~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEE--CCeEEEEchHHhEeC
Confidence            35678999999999999999999999997753   36999995  489999999998753

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-13  Score=83.14  Aligned_cols=56  Identities=29%  Similarity=0.546  Sum_probs=51.4

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+|+|.+...++|+|.+||+|.|+++.+++||.|+.  .|+.||||.+||+..
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~   69 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQKS   69 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEET
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEE--CCeEEEEehhhEEEC
Confidence            45689999999999999999999999999999999999995  489999999999865

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-13  Score=72.75  Aligned_cols=55  Identities=31%  Similarity=0.585  Sum_probs=48.0

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP  112 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~  112 (173)
                      ..++++++|.++..++|+|.+||++.|+++. ++||.+.....|+.|+||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEc-CCCEEEEeccCCeEeEEcHHHEEe
Confidence            4578999999999999999999999999875 468877766778999999999864

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=74.71  Aligned_cols=59  Identities=24%  Similarity=0.546  Sum_probs=50.6

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcC--CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~--~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+..++|+++|.++..++|+|.+||++.|+.+.+  ++||.++. ..|+.|+||++|++++.
T Consensus         5 ~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~-~~G~~G~vP~~yv~~~~   65 (71)
T d1u5sa1           5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEE-TTTEEEEEETTSEEECC
T ss_pred             ccEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEE-CCCCEEEEChHHEEECC
Confidence            3456889999999999999999999999998643  47999985 46899999999998763

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.9e-13  Score=71.92  Aligned_cols=53  Identities=26%  Similarity=0.573  Sum_probs=45.9

Q ss_pred             eeccCCCCCCCccccceecCCEEEEEEEcCC-CEEEEEeCCCCccCcCCCcccc
Q psy9669          59 YIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVA  111 (173)
Q Consensus        59 ~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~-~w~~~~~~~~~~~G~~p~~~v~  111 (173)
                      ++++|+|.++..++|+|.+||.+.|+...+. +||.+.....|+.|+||++|++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            5789999999999999999999999987654 5676666677999999999986

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-13  Score=74.60  Aligned_cols=54  Identities=41%  Similarity=0.879  Sum_probs=48.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+++|.++.+++|+|.+||++.|+++ +++||.++.  .++.|+||.+|+++.
T Consensus         9 ~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~--~g~~G~vP~~yv~~~   62 (69)
T d1uhfa_           9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPK   62 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECS--TTCCEEECGGGCEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEE--CCcEEEEchhhEEEC
Confidence            467899999999999999999999999987 568999995  489999999999875

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-13  Score=75.70  Aligned_cols=55  Identities=29%  Similarity=0.628  Sum_probs=49.2

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+++|.++..++|+|.+||++.|+++.+++||.++. ..+..|+||++|++++
T Consensus         8 ~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~~~~G~fP~~yv~~~   62 (71)
T d2hspa_           8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEEM   62 (71)
T ss_dssp             CEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBC-SSCCSCCEETTTCCSC
T ss_pred             EEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEE-CCeEEEEEchHHeEEc
Confidence            467899999999999999999999999999999999984 4566789999999876

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.9e-13  Score=78.88  Aligned_cols=59  Identities=24%  Similarity=0.451  Sum_probs=49.6

Q ss_pred             cceecccCCCCCCcceeecCCCEEEEEEc---CCCCeeEEEeCC------CCcEEEecCCCeEEeccc
Q psy9669         114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQR------TGRTGLFPASFMKQSDFF  172 (173)
Q Consensus       114 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~------~g~~G~~P~~~v~~~~~~  172 (173)
                      .++++++|.+...++|+|++|++|.|+.+   .+.+||.|....      +|+.||||.+||+.+..+
T Consensus        23 ~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          23 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            47899999999999999999999999876   357899998752      246899999999987543

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.3e-14  Score=79.00  Aligned_cols=58  Identities=33%  Similarity=0.724  Sum_probs=50.6

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc---------------CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~---------------~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++|+|+|.+...++|+|.+||+|.|+.+.               +++||.|+...+|+.|+||++||+.+.
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~   76 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   76 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcC
Confidence            4578999999999999999999999998742               457999997678999999999998653

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.8e-13  Score=73.74  Aligned_cols=57  Identities=28%  Similarity=0.610  Sum_probs=49.2

Q ss_pred             CceeeccCCCCCCCccccceecCCEEEEEEEc-CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ...++|+|+|.++..++|+|.+||+|.|+.+. +++||.++. .+|+.|+||.+||+..
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~-~~g~~G~~P~~yve~~   63 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQKR   63 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEEC-TTCCEEEEEGGGEEEC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEe-CCCCEEEEchHHeEEc
Confidence            35678999999999999999999999999875 557888884 5789999999999865

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.1e-13  Score=72.33  Aligned_cols=54  Identities=19%  Similarity=0.380  Sum_probs=47.8

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      .++|+|+|.++..++|+|.+||++.|++. .++||.+.. ..|+.|+||++|++.+
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~-~~~ww~~~~-~~g~~G~~P~nyve~i   56 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRN-ASGDSGFVPNNILDIM   56 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEEC-TTSCEEEEEGGGEEEE
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEE-cCCcEEEEE-cCCCEEEECHHHeEEC
Confidence            46899999999999999999999999986 468999984 5789999999999865

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=6.3e-14  Score=82.23  Aligned_cols=54  Identities=22%  Similarity=0.480  Sum_probs=45.7

Q ss_pred             ceecccCCCCC-----CcceeecCCCEEEEEEcCCCCeeEEEeC----CCCcEEEecCCCeEE
Q psy9669         115 FRCIVPYPPNS-----EYELELRVGDLIYVHKKRDDGWYKGTLQ----RTGRTGLFPASFMKQ  168 (173)
Q Consensus       115 ~~~~~~~~~~~-----~~el~~~~g~~v~v~~~~~~~w~~~~~~----~~g~~G~~P~~~v~~  168 (173)
                      ++++|+|.++.     ..+|+|++||++.|+.+.+++||.++..    .+|++|+||++|+++
T Consensus         4 vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            46889998765     3489999999999999999999999863    257899999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.8e-13  Score=80.59  Aligned_cols=51  Identities=27%  Similarity=0.714  Sum_probs=38.7

Q ss_pred             cCCccccccccccC-----------------CCeeecCCCCCChhhHHHHHhccc---ccCCCCCCCCCce
Q psy9669           8 DLLECSVCLDRLDT-----------------SSKVLPCQHTFCKKCLEEIVSSHK---ELRCPECPTFVPE   58 (173)
Q Consensus         8 ~~~~C~iC~~~~~~-----------------~~~~~~Cgh~fc~~Cl~~~~~~~~---~~~CP~Cr~~i~~   58 (173)
                      .+..|+||++.|..                 ...+++|||.||..||..|+...+   ..+||+||..+..
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            35579999987732                 125678999999999999997532   3579999976643

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.3e-13  Score=78.49  Aligned_cols=64  Identities=25%  Similarity=0.376  Sum_probs=54.3

Q ss_pred             CCCCCCCceeeccCCCCCCCccccceecCCEEEEEEE---cCCCEEEEEeCC------CCccCcCCCccccCC
Q psy9669          50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQR------TQRSGVFPGNYVAPA  113 (173)
Q Consensus        50 P~Cr~~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~---~~~~w~~~~~~~------~~~~G~~p~~~v~~~  113 (173)
                      +.|..++..++|+|+|.+...++|+|++||+|.|+.+   .+.+||.|....      .++.||||++||+..
T Consensus        15 ~~~~~~~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~   87 (106)
T d1i1ja_          15 QECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   87 (106)
T ss_dssp             TTCCSCSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             cccCceeeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEc
Confidence            4666777889999999999999999999999999987   457899998643      356899999999865

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.9e-13  Score=78.78  Aligned_cols=56  Identities=36%  Similarity=0.628  Sum_probs=45.8

Q ss_pred             cceecccCCCCC------CcceeecCCCEEEEEEcCC-CCeeEEEeCCCCcEEEecCCCeEEec
Q psy9669         114 KFRCIVPYPPNS------EYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMKQSD  170 (173)
Q Consensus       114 ~~~~~~~~~~~~------~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~g~~G~~P~~~v~~~~  170 (173)
                      .++++|+|.++.      ++||+|++||+|.|+...+ +|||.+... +|+.||||.+||+++.
T Consensus        19 ~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~-~G~~G~~P~nyve~~~   81 (96)
T d1wiea_          19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECCC
T ss_pred             EEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeC-CCCEEEEehHHeEECC
Confidence            467899997643      4789999999999987654 568888765 6899999999999864

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=75.90  Aligned_cols=56  Identities=13%  Similarity=0.216  Sum_probs=49.4

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEcC----CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~----~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      ..++++++|.++..++|+|.+||+|.|+++.+    .+||.++.  .++.||||.+|+++..
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~--~g~~G~~P~~yv~~~~   77 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN--GVTKGFVYSSFLKPYN   77 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC--SSSEEEEEGGGEEECC
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEe--cccEEEEEhhhceecC
Confidence            45789999999999999999999999999753    68999994  5899999999998764

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.5e-13  Score=74.42  Aligned_cols=57  Identities=32%  Similarity=0.597  Sum_probs=49.1

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      +...++++++|.++..++|+|.+||+|.|+.+.. ++||.++.  .++.|+||.+|++.+
T Consensus         9 p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yve~i   66 (72)
T d1ugva_           9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFL   66 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             CCEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEe--CCCEEEEchHHEEEC
Confidence            3556899999999999999999999999888654 56999984  589999999999865

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.2e-13  Score=74.26  Aligned_cols=55  Identities=22%  Similarity=0.517  Sum_probs=48.5

Q ss_pred             eeeccCCCCCCCccccceecCCEEEEEEEc----CCCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          58 EYIAIYPYKPQKDDELELRRGSVYTVTERC----QDGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        58 ~~~~~~~~~~~~~~el~~~~g~~v~v~~~~----~~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .++|+++|.++.+++|+|.+||++.|+++.    ..+||.++  ..++.|+||.+||+++.
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~--~~g~~G~vP~~yv~~~~   73 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE--VNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE--SSSCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEE--ECCCEEEEehhhEEECC
Confidence            478999999999999999999999999864    46899999  46899999999998763

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.28  E-value=1.2e-12  Score=75.52  Aligned_cols=53  Identities=23%  Similarity=0.496  Sum_probs=46.2

Q ss_pred             cceecccCCCCCCcc-------eeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCe
Q psy9669         114 KFRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFM  166 (173)
Q Consensus       114 ~~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v  166 (173)
                      .++++|+|.+..+++       |+|++||+|.|+.+.+++||.|+... .|+.|+||++++
T Consensus        23 ~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          23 AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            367899999988887       99999999999999999999999843 378999999764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.28  E-value=1.1e-12  Score=69.92  Aligned_cols=49  Identities=18%  Similarity=0.529  Sum_probs=39.0

Q ss_pred             ccCCccccccccccCCCeeecC-----CCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPC-----QHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~C-----gh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      ++...|+||++.+ ......+|     +|.||..||.+|+..++..+||+||+.+
T Consensus         4 ed~~~C~IC~~~~-~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~   57 (60)
T d1vyxa_           4 EDVPVCWICNEEL-GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEEC-SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCCCccCCccC-CCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence            4667899999987 45555554     5999999999999865667899999765

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8e-13  Score=77.44  Aligned_cols=50  Identities=14%  Similarity=0.077  Sum_probs=42.4

Q ss_pred             hcccCCccccccccccCCCeeecCCC-CCChhhHHHHHhcccccCCCCCCCCCc
Q psy9669           5 TLNDLLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECPTFVP   57 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~~~~~~Cgh-~fc~~Cl~~~~~~~~~~~CP~Cr~~i~   57 (173)
                      ++-+++.||||.++| ..|++++||| +||+.||.+|+..+  ..||+|+.++.
T Consensus        18 ~~P~~f~CPI~~~lm-~dPV~~~~~~~ty~r~~I~~~l~~~--~~~P~~~~~l~   68 (98)
T d1wgma_          18 DACDEFLDPIMSTLM-CDPVVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLT   68 (98)
T ss_dssp             SCCTTTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCC
T ss_pred             CCcHHhCCcCchhHH-HHHHhcccccchhhHHHHHHHHHhc--CCccccccccc
Confidence            455799999999999 8999998775 89999999999764  36999998764

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-12  Score=76.17  Aligned_cols=55  Identities=33%  Similarity=0.732  Sum_probs=48.3

Q ss_pred             ceeeccCCCCCCCccccceecCCEEEEEEEc--CCCEEEEEeCCCCccCcCCCccccCC
Q psy9669          57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        57 ~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~--~~~w~~~~~~~~~~~G~~p~~~v~~~  113 (173)
                      ..++|+|+|.++..+||+|.+||+|.|+.+.  +.+||.+..  .|+.|+||.+|++.+
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~--~g~~G~~P~~Yve~~   62 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEEC
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEe--CCcEEEEchHHEEEC
Confidence            3578999999999999999999999999765  457899985  599999999999865

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-12  Score=74.80  Aligned_cols=46  Identities=17%  Similarity=0.447  Sum_probs=36.6

Q ss_pred             CCccccccccccC-----------------CCeeecCCCCCChhhHHHHHhcccccCCCCCCCCC
Q psy9669           9 LLECSVCLDRLDT-----------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV   56 (173)
Q Consensus         9 ~~~C~iC~~~~~~-----------------~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i   56 (173)
                      +-.|+||++.+..                 .+..++|||.||..||.+|+..++  +||+||.++
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~   83 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREW   83 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS--BCSSSCSBC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC--cCCCCCCcc
Confidence            3469999877631                 236678999999999999999754  699999765

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=8.6e-13  Score=74.93  Aligned_cols=59  Identities=31%  Similarity=0.556  Sum_probs=48.8

Q ss_pred             CCceeeccCCCCCCCccccceecCCEEEEEEEc-----CCCEEEEEeCC--------CCccCcCCCccccCC
Q psy9669          55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-----QDGWFKGTSQR--------TQRSGVFPGNYVAPA  113 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~~~el~~~~g~~v~v~~~~-----~~~w~~~~~~~--------~~~~G~~p~~~v~~~  113 (173)
                      .+..++|+|+|.++..++|+|.+||+|.|+.+.     +++||.|....        .|+.|+||++||+.+
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            345688999999999999999999999999864     36799997422        357899999999754

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.2e-12  Score=76.60  Aligned_cols=55  Identities=24%  Similarity=0.483  Sum_probs=46.7

Q ss_pred             eeccCCCCCCCc-----cccceecCCEEEEEEEcCCCEEEEEe----CCCCccCcCCCccccCC
Q psy9669          59 YIAIYPYKPQKD-----DELELRRGSVYTVTERCQDGWFKGTS----QRTQRSGVFPGNYVAPA  113 (173)
Q Consensus        59 ~~~~~~~~~~~~-----~el~~~~g~~v~v~~~~~~~w~~~~~----~~~~~~G~~p~~~v~~~  113 (173)
                      .+|+|+|.++..     .+|+|.+||++.|+++.+++||.++.    ...|+.|+||++|+++.
T Consensus         4 vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            468999998753     48999999999999999999999985    24578999999999753

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-12  Score=74.62  Aligned_cols=59  Identities=29%  Similarity=0.497  Sum_probs=47.3

Q ss_pred             CCceeeccCCCCCCC------ccccceecCCEEEEEEEcC-CCEEEEEeCCCCccCcCCCccccCCc
Q psy9669          55 FVPEYIAIYPYKPQK------DDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK  114 (173)
Q Consensus        55 ~i~~~~~~~~~~~~~------~~el~~~~g~~v~v~~~~~-~~w~~~~~~~~~~~G~~p~~~v~~~~  114 (173)
                      .+..++|+|+|.++.      .+||+|.+||+|.|+.+.+ ++||.+.. ..|+.||||++||+++.
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~-~~G~~G~~P~nyve~~~   81 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEE-TTCCBCBCCTTSEECCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEe-CCCCEEEEehHHeEECC
Confidence            345688999998754      4789999999999997654 46887764 46899999999998763

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.21  E-value=7.4e-12  Score=72.15  Aligned_cols=55  Identities=15%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             CceeeccCCCCCCCccc-------cceecCCEEEEEEEcCCCEEEEEeCC-CCccCcCCCccc
Q psy9669          56 VPEYIAIYPYKPQKDDE-------LELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYV  110 (173)
Q Consensus        56 i~~~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~~-~~~~G~~p~~~v  110 (173)
                      ...++++|+|.+...++       |+|.+||+|.|+++.+++||.|+... .++.|+||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            44578999999999888       99999999999999999999999632 467899999764

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=3.7e-11  Score=75.30  Aligned_cols=52  Identities=17%  Similarity=0.456  Sum_probs=45.7

Q ss_pred             ceecccCCCCCCcc-------eeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCe
Q psy9669         115 FRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFM  166 (173)
Q Consensus       115 ~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v  166 (173)
                      ++++++|.+...++       |+|++||+|.|+.+.+++||.+++.. .|+.|+||.+|+
T Consensus        26 vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          26 VKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            68899999988876       99999999999999999999999732 488999998764

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=2.8e-10  Score=71.24  Aligned_cols=53  Identities=13%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             eeeccCCCCCCCccc-------cceecCCEEEEEEEcCCCEEEEEeC-CCCccCcCCCccc
Q psy9669          58 EYIAIYPYKPQKDDE-------LELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV  110 (173)
Q Consensus        58 ~~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~-~~~~~G~~p~~~v  110 (173)
                      ..+++|+|.+...++       |+|.+||+|.|+++.+++||.|+.. ..|+.|+||+++.
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            478999999998887       9999999999999999999999962 2588999999764

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=1.2e-09  Score=67.12  Aligned_cols=52  Identities=21%  Similarity=0.443  Sum_probs=43.5

Q ss_pred             ceecccCCCCCCcc-------eeecCCCEEEEEEcCCCCeeEEEeCC-CCcEEEecCCCe
Q psy9669         115 FRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFM  166 (173)
Q Consensus       115 ~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~~-~g~~G~~P~~~v  166 (173)
                      ++++++|.+..+++       |+|+.||++.|+...+++||.++... .+..|+||..+.
T Consensus        26 vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          26 VRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            56788888776655       99999999999999999999999743 367899998763

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.2e-10  Score=64.95  Aligned_cols=47  Identities=26%  Similarity=0.685  Sum_probs=35.1

Q ss_pred             cCCcccccccccc--CCCeeecCCCCCChhhHHHHHhcc------cccCCCCCCC
Q psy9669           8 DLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSH------KELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~--~~~~~~~Cgh~fc~~Cl~~~~~~~------~~~~CP~Cr~   54 (173)
                      ....|+||++.+.  +.+.+++|||.||..|+..|+...      ...+||.|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4568999998773  224556899999999999998732      2357998764

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=2.6e-09  Score=65.61  Aligned_cols=53  Identities=13%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             eeeccCCCCCCCccc-------cceecCCEEEEEEEcCCCEEEEEeC-CCCccCcCCCccc
Q psy9669          58 EYIAIYPYKPQKDDE-------LELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV  110 (173)
Q Consensus        58 ~~~~~~~~~~~~~~e-------l~~~~g~~v~v~~~~~~~w~~~~~~-~~~~~G~~p~~~v  110 (173)
                      ..+++++|.+...++       |+|..||++.|+++.+++||.|+.. ..+..|+||+.+.
T Consensus        25 ~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          25 AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            467899999877776       8899999999999999999999963 3467899999874

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00014  Score=39.02  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             CCcceeecCCCEEEEEEcCCCCeeEEEeCCCCcEEEecCCCe
Q psy9669         125 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM  166 (173)
Q Consensus       125 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~g~~G~~P~~~v  166 (173)
                      +..+|.+++||.+.|+...+.+-|.++.. .|+.|||+.+++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~-~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcC-CCcEEEEEeeee
Confidence            34689999999999999888899999987 899999998775

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00067  Score=35.28  Aligned_cols=36  Identities=31%  Similarity=0.826  Sum_probs=29.0

Q ss_pred             ccCCccccccccccCCCeeecC----CCCCChhhHHHHHhc
Q psy9669           7 NDLLECSVCLDRLDTSSKVLPC----QHTFCKKCLEEIVSS   43 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~C----gh~fc~~Cl~~~~~~   43 (173)
                      .+.+.|-+|.+.+ ++.-+..|    +|.||..|-+..+..
T Consensus         6 ~~~l~CtlC~erL-EdtHFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           6 SGPLCCTICHERL-EDTHFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             CCSCCCSSSCSCC-SSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCceeeeeehhhh-cCCceEeCCCCcCCceeccccHHHHHh
Confidence            4568999999998 66555555    799999999988874

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00076  Score=36.05  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             CccccceecCCEEEEEEEcCCCEEEEEeCCCCccCcCCCccc
Q psy9669          69 KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV  110 (173)
Q Consensus        69 ~~~el~~~~g~~v~v~~~~~~~w~~~~~~~~~~~G~~p~~~v  110 (173)
                      ...+|.+..|+.+.|+...+++-|.++ +..|+-||++..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcR-N~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCR-NEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEE-ETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEE-cCCCcEEEEEeeee
Confidence            346899999999999999999999999 47899999987764

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.016  Score=30.94  Aligned_cols=35  Identities=26%  Similarity=0.639  Sum_probs=26.1

Q ss_pred             hhcccCCccccccccccCCCeeec---CCCCCChhhHHHH
Q psy9669           4 WTLNDLLECSVCLDRLDTSSKVLP---CQHTFCKKCLEEI   40 (173)
Q Consensus         4 ~~~~~~~~C~iC~~~~~~~~~~~~---Cgh~fc~~Cl~~~   40 (173)
                      +.+..+-.|.|| +.+ ..-.+++   |+..||-.||++.
T Consensus        10 e~v~~D~mC~vC-~v~-t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVW-TAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-Ccc-cccceecceeecchhhHHHHHHh
Confidence            456788899999 556 3333334   8899999999886

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.0015  Score=34.07  Aligned_cols=45  Identities=31%  Similarity=0.572  Sum_probs=31.7

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhcccccCCCCCCCCCceeec
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIA   61 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~~~~   61 (173)
                      ++.||.|+..+. . +   =||.+|..|-..+...   ..||.|..++....|
T Consensus         2 ~~~CP~C~~eL~-~-~---~~~~~C~~C~~~~~~~---a~CPdC~~~Le~LkA   46 (71)
T d2jnea1           2 ELHCPQCQHVLD-Q-D---NGHARCRSCGEFIEMK---ALCPDCHQPLQVLKA   46 (71)
T ss_dssp             CCBCSSSCSBEE-E-E---TTEEEETTTCCEEEEE---EECTTTCSBCEEEEE
T ss_pred             CCcCCCccCccc-c-c---CCCEehhhhhhhheeE---EeCCccccHHHHHHh
Confidence            468999998873 2 1   1678888887766543   469999988765443

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.50  E-value=0.14  Score=27.38  Aligned_cols=50  Identities=24%  Similarity=0.513  Sum_probs=34.0

Q ss_pred             cCCcccccccccc---C-CC--eeecCCCCCChhhHHHHHhcccccCCCCCCCCCce
Q psy9669           8 DLLECSVCLDRLD---T-SS--KVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE   58 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~-~~--~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~Cr~~i~~   58 (173)
                      ....|.||-+...   + .+  ..-.|+-..|+.|.+=-... ....||.|+.....
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCkt~Ykr   70 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR   70 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhc-cCccCcccCChhhh
Confidence            4568999998653   1 11  23368999999999744433 44689999876543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.055  Score=26.21  Aligned_cols=44  Identities=25%  Similarity=0.628  Sum_probs=28.7

Q ss_pred             ccccccccccCCC--eeecCCCCCChhhHHHHHhc--ccccCCCCCCC
Q psy9669          11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSS--HKELRCPECPT   54 (173)
Q Consensus        11 ~C~iC~~~~~~~~--~~~~Cgh~fc~~Cl~~~~~~--~~~~~CP~Cr~   54 (173)
                      .|.||...-....  ....|...||..|+..-+..  .....||.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888986542222  22369999999999765442  23467999973

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.037  Score=28.07  Aligned_cols=46  Identities=24%  Similarity=0.484  Sum_probs=30.9

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHHHHHhc--ccccCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--HKELRCPECPTF   55 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~--~~~~~CP~Cr~~   55 (173)
                      ...|.+|.+.- .-...-.|.-.||..|+...+..  .....||.|+..
T Consensus         9 ~~~C~~C~~~g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           9 MEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             CSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             cCCCcCCCCCC-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            34688998643 33344469999999999654442  235789999743

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.52  E-value=0.035  Score=29.14  Aligned_cols=47  Identities=19%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             ccCCccccccccccCCCeeec---C-CCCCChhhHHHHHhcccccCCCCCCC
Q psy9669           7 NDLLECSVCLDRLDTSSKVLP---C-QHTFCKKCLEEIVSSHKELRCPECPT   54 (173)
Q Consensus         7 ~~~~~C~iC~~~~~~~~~~~~---C-gh~fc~~Cl~~~~~~~~~~~CP~Cr~   54 (173)
                      ++..-| ||........++..   | ...||..||.--........||.|+.
T Consensus        14 ~e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~C~~   64 (71)
T d1wesa_          14 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG   64 (71)
T ss_dssp             SSCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTTTSS
T ss_pred             CCCCEE-EeCCCCCCCEEEEECCCCCCcCccCccCCCCcCCCCcEECcCCcc
Confidence            344567 99976522323332   3 34699999952211233578999974

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=91.22  E-value=0.025  Score=23.48  Aligned_cols=29  Identities=21%  Similarity=0.603  Sum_probs=21.0

Q ss_pred             CccccccccccCCCeeecCCCCCChhhHH
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLE   38 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~   38 (173)
                      +.|+.|...+..-.+.-.=|.+||+.|-.
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cya   29 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYA   29 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeee
Confidence            47999998883334444688899999853

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.0092  Score=31.68  Aligned_cols=42  Identities=24%  Similarity=0.584  Sum_probs=26.4

Q ss_pred             cCCccccccccccC-----CCeeecCCCCCChhhHHHHHhcccccCC
Q psy9669           8 DLLECSVCLDRLDT-----SSKVLPCQHTFCKKCLEEIVSSHKELRC   49 (173)
Q Consensus         8 ~~~~C~iC~~~~~~-----~~~~~~Cgh~fc~~Cl~~~~~~~~~~~C   49 (173)
                      ...-||-|...+..     ..+.-.||+.||..|-..|-..+...+|
T Consensus        17 ~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w~~~H~~~tC   63 (73)
T d2ct7a1          17 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSC   63 (73)
T ss_dssp             CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCH
T ss_pred             CCCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcchhcCCCCCCH
Confidence            34578999875531     1233368999999999887443333334

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.00  E-value=0.032  Score=28.59  Aligned_cols=47  Identities=21%  Similarity=0.517  Sum_probs=31.0

Q ss_pred             cCCccccccccccCCC---eeecCCCCCChhhHHHHHh---cccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVS---SHKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~---~~~~Cgh~fc~~Cl~~~~~---~~~~~~CP~Cr~   54 (173)
                      +...|.+|........   ..-.|+..||..|+.--..   ....+.||.|+.
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~   57 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcC
Confidence            5678999997653222   2446999999999953222   123478999863

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.16  Score=26.37  Aligned_cols=46  Identities=20%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhhHHHHHhc--ccccCCCCCCC
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--HKELRCPECPT   54 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~~~~~~--~~~~~CP~Cr~   54 (173)
                      +...|.+|.+.= .-...-.|...||..|+..-+..  .....||.|+.
T Consensus         6 ~c~~C~~C~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~   53 (70)
T d1fp0a1           6 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV   53 (70)
T ss_dssp             SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred             CCCCCCCCCCcC-EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcC
Confidence            345677887532 22233369999999999765442  23467999974

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.10  E-value=0.061  Score=28.27  Aligned_cols=34  Identities=21%  Similarity=0.515  Sum_probs=24.5

Q ss_pred             cccCCcccccccccc---CCCeeecCCCCCChhhHHH
Q psy9669           6 LNDLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEE   39 (173)
Q Consensus         6 ~~~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~   39 (173)
                      +.++-.|.+|...|.   ..--.-.||+.||..|...
T Consensus        10 W~~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~   46 (72)
T d1dvpa2          10 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK   46 (72)
T ss_dssp             CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred             CCcCCccccCCCcccCccccccccccCCeeChhhhCC
Confidence            445668999998773   2334446999999999754

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.97  E-value=0.11  Score=26.85  Aligned_cols=32  Identities=19%  Similarity=0.557  Sum_probs=22.3

Q ss_pred             cCCcccccccccc---CCCeeecCCCCCChhhHHH
Q psy9669           8 DLLECSVCLDRLD---TSSKVLPCQHTFCKKCLEE   39 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~~   39 (173)
                      ++-.|.+|...|.   ..--.-.||..||..|...
T Consensus         4 ~~~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~   38 (67)
T d1vfya_           4 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   38 (67)
T ss_dssp             CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             cCcccccCCCcccCcccccccccCCCEecccccCC
Confidence            3457999998773   2223336999999999743

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.12  Score=23.65  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             CccccccccccCCCeeecCCCCCChhh
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKC   36 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~C   36 (173)
                      ..|..|.+.+ ..+++..=+|.||..|
T Consensus        16 ~~C~~C~~~I-tG~V~~Ag~~~yHP~C   41 (41)
T d1v6ga1          16 TRCFSCDQFI-EGEVVSALGKTYHPDC   41 (41)
T ss_dssp             CBCTTTCCBC-CSCCEEETTEEECTTT
T ss_pred             cccccccCEe-eeeeeEecCcccCCCC
Confidence            4799999999 7888888889999887

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=0.096  Score=21.75  Aligned_cols=12  Identities=33%  Similarity=0.653  Sum_probs=8.0

Q ss_pred             cCCccccccccc
Q psy9669           8 DLLECSVCLDRL   19 (173)
Q Consensus         8 ~~~~C~iC~~~~   19 (173)
                      ..+.||||+.-|
T Consensus         2 kp~~cpic~qrf   13 (32)
T d2epqa1           2 KPYSCPVCGLRF   13 (32)
T ss_dssp             CSSEETTTTEEC
T ss_pred             CCcccchHHHHh
Confidence            346777777665

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.09  E-value=0.077  Score=31.07  Aligned_cols=32  Identities=25%  Similarity=0.617  Sum_probs=22.7

Q ss_pred             ccCCcccccccccc----CCCeeecCCCCCChhhHH
Q psy9669           7 NDLLECSVCLDRLD----TSSKVLPCQHTFCKKCLE   38 (173)
Q Consensus         7 ~~~~~C~iC~~~~~----~~~~~~~Cgh~fc~~Cl~   38 (173)
                      .+...|.+|...|.    .......||+.||..|-.
T Consensus        46 ~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~   81 (124)
T d1zbdb_          46 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV   81 (124)
T ss_dssp             CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred             cCCCcCcccCCcccCCCCCCCcCccCCcccccCCCC
Confidence            34567999998763    122456799999999953

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.77  E-value=0.15  Score=25.59  Aligned_cols=34  Identities=24%  Similarity=0.518  Sum_probs=23.4

Q ss_pred             CCcccccccccc-----CCCeee--cCCCCCChhhHHHHHh
Q psy9669           9 LLECSVCLDRLD-----TSSKVL--PCQHTFCKKCLEEIVS   42 (173)
Q Consensus         9 ~~~C~iC~~~~~-----~~~~~~--~Cgh~fc~~Cl~~~~~   42 (173)
                      .-.||.|...+.     +.....  .||+.||..|...|..
T Consensus         6 tK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~~   46 (60)
T d1wd2a_           6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP   46 (60)
T ss_dssp             CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred             CcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCcccc
Confidence            347999997663     223443  3899999999887755

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.19  Score=25.54  Aligned_cols=31  Identities=19%  Similarity=0.651  Sum_probs=21.6

Q ss_pred             cCCcccccccccc---CCCeeecCCCCCChhhHH
Q psy9669           8 DLLECSVCLDRLD---TSSKVLPCQHTFCKKCLE   38 (173)
Q Consensus         8 ~~~~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~   38 (173)
                      +...|.+|...|.   ..--.-.||++||..|..
T Consensus         7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~   40 (64)
T d1joca1           7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA   40 (64)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred             cCCcCcCcCCcccCCccccchhhhCCeecccccC
Confidence            3457999988773   122333699999999974

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.10  E-value=0.25  Score=21.63  Aligned_cols=28  Identities=14%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             cCCccccccccccCCCeeecCCCCCChhh
Q psy9669           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKC   36 (173)
Q Consensus         8 ~~~~C~iC~~~~~~~~~~~~Cgh~fc~~C   36 (173)
                      ..-.|.+|...+ .+-++-..|-.||..|
T Consensus         7 tlEkC~~C~~~I-~driLrA~Gk~yHP~C   34 (35)
T d2dloa1           7 TLEKCATCSQPI-LDRILRAMGKAYHPGC   34 (35)
T ss_dssp             SCCBCTTTCCBC-CSCCEEETTEEECTTT
T ss_pred             HHHHHHHhchHH-HHHHHHHhCCCCCCCC
Confidence            445799999888 5666667888887777

>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}

class: All alpha proteins
fold: SMc04008-like
superfamily: SMc04008-like
family: SMc04008-like
domain: Hypothetical protein SMc04008
species: Rhizobium meliloti [TaxId: 382]

Probab=83.67  E-value=0.22  Score=26.03  Aligned_cols=13  Identities=31%  Similarity=0.887  Sum_probs=11.5

Q ss_pred             CCChhhHHHHHhc
Q psy9669          31 TFCKKCLEEIVSS   43 (173)
Q Consensus        31 ~fc~~Cl~~~~~~   43 (173)
                      .||..||.+|...
T Consensus        39 GFCRNCLskWy~~   51 (79)
T d2o35a1          39 GFCRNCLSNWYRE   51 (79)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5999999999874

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.12  Score=25.68  Aligned_cols=46  Identities=28%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             hcccCCccccccccccCC--CeeecCCCCCChhhHHHHHhcccccCCCCC
Q psy9669           5 TLNDLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (173)
Q Consensus         5 ~~~~~~~C~iC~~~~~~~--~~~~~Cgh~fc~~Cl~~~~~~~~~~~CP~C   52 (173)
                      .......|--|+..+...  .....|++.||.+|=. +++. ..-.||-|
T Consensus        11 ~~~~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~-fiHe-~lh~CpgC   58 (59)
T d1z60a1          11 EYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD-SLHSCPGC   58 (59)
T ss_dssp             HHCSCCEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT-TSCSSSTT
T ss_pred             hcCCCCCccCCCCcCCCCceEECcCCCCccccccch-hhhh-hhcCCCCC
Confidence            345567899999877433  3445799999999942 2221 11248866

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=0.17  Score=24.46  Aligned_cols=28  Identities=25%  Similarity=0.765  Sum_probs=19.6

Q ss_pred             cccccccccc---CCCeeecCCCCCChhhHH
Q psy9669          11 ECSVCLDRLD---TSSKVLPCQHTFCKKCLE   38 (173)
Q Consensus        11 ~C~iC~~~~~---~~~~~~~Cgh~fc~~Cl~   38 (173)
                      .|.+|...|.   ..--.-.||..||..|..
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~   32 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSS   32 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred             CccccCCcccCCccCcccccCCcccCccccC
Confidence            4777877663   233444699999999964

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.19  E-value=0.23  Score=21.94  Aligned_cols=26  Identities=12%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CccccccccccCCCeeecCCCCCChhh
Q psy9669          10 LECSVCLDRLDTSSKVLPCQHTFCKKC   36 (173)
Q Consensus        10 ~~C~iC~~~~~~~~~~~~Cgh~fc~~C   36 (173)
                      ..|..|...+ ....+...+..||.+|
T Consensus         9 pkC~~C~~~I-~g~~v~Al~~~wHpeC   34 (35)
T d1x3ha1           9 PKCGGCNRPV-LENYLSAMDTVWHPEC   34 (35)
T ss_dssp             CBCTTTCCBC-CSSCEEETTEEECTTT
T ss_pred             hhhhhcCCcc-cchheeecCCccCccc
Confidence            4799999988 6778888888888877

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.29  E-value=2.2  Score=22.27  Aligned_cols=46  Identities=20%  Similarity=0.501  Sum_probs=29.1

Q ss_pred             CCccccccccccCCC---eeecCCCCCChhhHHHH---HhcccccCCCCCCCC
Q psy9669           9 LLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEI---VSSHKELRCPECPTF   55 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~---~~~~Cgh~fc~~Cl~~~---~~~~~~~~CP~Cr~~   55 (173)
                      .+-| ||........   ..-.|.-.||..|+.-.   ......+.||.|+..
T Consensus        12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~   63 (79)
T d1wepa_          12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred             CeEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCC
Confidence            3445 9987653222   23469999999998422   222245899999853

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.76  E-value=0.4  Score=25.04  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=22.9

Q ss_pred             CCccccccccccCCCeeecCCCCCChhhHH
Q psy9669           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLE   38 (173)
Q Consensus         9 ~~~C~iC~~~~~~~~~~~~Cgh~fc~~Cl~   38 (173)
                      ...|.+|...+......-.||+.||.....
T Consensus        25 k~RC~~C~KKl~l~~~~CrCg~~FC~~HR~   54 (74)
T d1wfpa_          25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRY   54 (74)
T ss_dssp             CCBCSSSCCBCTTTCEECTTSCEECTTTCS
T ss_pred             CCcChhcCCccCCCceecCCCChhhhccCC
Confidence            568999998764455677899999996653