Psyllid ID: psy9718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLKSFK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccc
Coil and Loop (DISEMBL)
MEKRRRARINNCLNELKTLILDAMkkdparhsklekADILEMTVKHLENMQRQQLALsaatdphvlksfk
Flexible Loop (DISEMBL)
mekrrrarinnCLNELKTLildamkkdparhSKLEKADILEMTVKHLENMQRQQlalsaatdphvlksfk
Low Complexity Region (SEG)
MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLKSFK
Disordered region (IsUnstruct)
*********NNCLNELKTLILD************************************************
Disordered Region (DISOPRED)
**KRRRARINNCLNELKTLIL****************DILEMTVKHL***********************
Disordered Region (DISEMBL)
MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLKSFK
Disordered Region (DISPRO)
****RRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLKSFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q26263	435	Protein deadpan OS=Drosop	yes	N/A	1.0	0.160	0.757	4e-25
Q04666	281	Transcription factor HES-	yes	N/A	1.0	0.249	0.7	3e-22
P35428	282	Transcription factor HES-	yes	N/A	1.0	0.248	0.7	5e-22
Q6IRB2	267	Transcription factor HES-	N/A	N/A	1.0	0.262	0.7	8e-22
P14003	337	Protein hairy OS=Drosophi	no	N/A	1.0	0.207	0.785	1e-21
P29303	378	Protein hairy OS=Drosophi	N/A	N/A	1.0	0.185	0.785	1e-21
Q3ZBG4	280	Transcription factor HES-	yes	N/A	1.0	0.25	0.7	1e-21
Q14469	280	Transcription factor HES-	yes	N/A	1.0	0.25	0.7	2e-21
Q8AVU4	267	Transcription factor HES-	N/A	N/A	1.0	0.262	0.7	2e-21
O57337	290	Transcription factor HES-	no	N/A	1.0	0.241	0.685	2e-21

>sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster GN=dpn PE=1 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/70 (75%), Positives = 65/70 (92%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN+CLNELK+LIL+AMKKDPARH+KLEKADILEMTVKHL+++QRQQL ++  
Sbjct: 48  MEKRRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQQLNMAIQ 107

Query: 61  TDPHVLKSFK 70
           +DP V++ FK
Sbjct: 108 SDPSVVQKFK 117

Transcriptional repressor of genes that require a bHLH protein for their transcription. Likely to be involved in the functional rather than the morphological differentiation of neurons. Loss of DPN function results in weak motor activity, lethargic behavior, and death. Implicated in sex determination as Groucho-DPN complex act directly to repress SXL transcription.
Drosophila melanogaster (taxid: 7227)

>sp|Q04666|HES1_RAT Transcription factor HES-1 OS=Rattus norvegicus GN=Hes1 PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct: 42  MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|P35428|HES1_MOUSE Transcription factor HES-1 OS=Mus musculus GN=Hes1 PE=1 SV=1

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct: 42  MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1 (By similarity). Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Mus musculus (taxid: 10090)

>sp|Q6IRB2|HES1A_XENLA Transcription factor HES-1-A OS=Xenopus laevis GN=hes1-a PE=1 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L +LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q++ + +
Sbjct: 42  MEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMSAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|P14003|HAIR_DROME Protein hairy OS=Drosophila melanogaster GN=h PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 60/70 (85%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLNELKTLILDA KKDPARHSKLEKADILE TVKHL+ +QRQQ A+  A
Sbjct: 39  MEKRRRARINNCLNELKTLILDATKKDPARHSKLEKADILEKTVKHLQELQRQQAAMQQA 98

Query: 61  TDPHVLKSFK 70
            DP ++  FK
Sbjct: 99  ADPKIVNKFK 108

Pair-rule protein that regulates embryonic segmentation and adult bristle patterning. Transcriptional repressor of genes that require a bHLH protein for their transcription (e.g. the Fushi tarazu gene).

Drosophila melanogaster (taxid: 7227)

>sp|P29303|HAIR_DROVI Protein hairy OS=Drosophila virilis GN=h PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 60/70 (85%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLNELKTLILDA KKDPARHSKLEKADILE TVKHL+ +QRQQ A+  A
Sbjct: 45  MEKRRRARINNCLNELKTLILDATKKDPARHSKLEKADILEKTVKHLQELQRQQAAMQQA 104

Query: 61  TDPHVLKSFK 70
            DP ++  FK
Sbjct: 105 ADPKIINKFK 114

Pair-rule protein that regulates embryonic segmentation and adult bristle patterning. Transcriptional repressor of genes that require a bHLH protein for their transcription (e.g. the Fushi tarazu gene).

Drosophila virilis (taxid: 7244)

>sp|Q3ZBG4|HES1_BOVIN Transcription factor HES-1 OS=Bos taurus GN=HES1 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct: 42  MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Bos taurus (taxid: 9913)

>sp|Q14469|HES1_HUMAN Transcription factor HES-1 OS=Homo sapiens GN=HES1 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct: 42  MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q8AVU4|HES1B_XENLA Transcription factor HES-1-B OS=Xenopus laevis GN=hes1-b PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 58/70 (82%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L +LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct: 42  MEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALS 101

Query: 61  TDPHVLKSFK 70
           TDP VL  ++
Sbjct: 102 TDPSVLGKYR 111

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|O57337|HES1_CHICK Transcription factor HES-1 OS=Gallus gallus GN=HES1 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARIN  L +LK LILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+A + +
Sbjct: 43  MEKRRRARINESLGQLKMLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMAAALS 102

Query: 61  TDPHVLKSFK 70
            DP VL  ++
Sbjct: 103 ADPSVLGKYR 112

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
208972121	410	Hairy protein [Periplaneta americana]	1.0	0.170	0.885	3e-29
170037964	345	hairy [Culex quinquefasciatus] gi|167881	1.0	0.202	0.871	1e-28
158296333	374	AGAP006699-PA [Anopheles gambiae str. PE	1.0	0.187	0.885	1e-28
157110092	343	hairy protein [Aedes aegypti] gi|1571309	1.0	0.204	0.885	1e-28
156550861	376	PREDICTED: protein hairy-like [Nasonia v	1.0	0.186	0.842	8e-28
166796106	249	hairy [Tribolium castaneum] gi|20269075|	1.0	0.281	0.857	1e-27
270014144	249	hypothetical protein TcasGA2_TC012851 [T	1.0	0.281	0.857	1e-27
383855344	359	PREDICTED: protein hairy-like [Megachile	1.0	0.194	0.871	2e-27
110762302	363	PREDICTED: protein hairy [Apis mellifera	1.0	0.192	0.871	3e-27
194022542	255	hairy [Tribolium confusum]	1.0	0.274	0.857	3e-27

>gi|208972121|gb|ACI32659.1| Hairy protein [Periplaneta americana]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/70 (88%), Positives = 67/70 (95%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLNEL+TLILDAMKKDPARHSKLEKADILEMTVKHLEN+QRQQ+A+SAA
Sbjct: 58  MEKRRRARINNCLNELRTLILDAMKKDPARHSKLEKADILEMTVKHLENLQRQQVAMSAA 117

Query: 61  TDPHVLKSFK 70
           TDP VL  F+
Sbjct: 118 TDPSVLNKFR 127

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037964|ref|XP_001846824.1| hairy [Culex quinquefasciatus] gi|167881356|gb|EDS44739.1| hairy [Culex quinquefasciatus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 66/70 (94%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLN+LKTLILDAMKKDPARHSKLEKADILEMTVKHLEN+QRQQ A+S A
Sbjct: 42  MEKRRRARINNCLNDLKTLILDAMKKDPARHSKLEKADILEMTVKHLENLQRQQTAMSQA 101

Query: 61  TDPHVLKSFK 70
           TDP+V+  FK
Sbjct: 102 TDPNVMNKFK 111

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296333|ref|XP_316733.3| AGAP006699-PA [Anopheles gambiae str. PEST] gi|157016460|gb|EAA11851.3| AGAP006699-PA [Anopheles gambiae str. PEST]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLEN+QRQQ A+S A
Sbjct: 41  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENLQRQQTAMSQA 100

Query: 61  TDPHVLKSFK 70
           TDP V+  FK
Sbjct: 101 TDPSVMNKFK 110

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110092|ref|XP_001650948.1| hairy protein [Aedes aegypti] gi|157130964|ref|XP_001662100.1| hairy protein [Aedes aegypti] gi|108871710|gb|EAT35935.1| AAEL011943-PA [Aedes aegypti] gi|108878802|gb|EAT43027.1| AAEL005480-PA [Aedes aegypti]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 66/70 (94%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLEN+QRQQ A+S A
Sbjct: 43  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENLQRQQNAMSQA 102

Query: 61  TDPHVLKSFK 70
           TDP+V+  FK
Sbjct: 103 TDPNVMNKFK 112

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550861|ref|XP_001601817.1| PREDICTED: protein hairy-like [Nasonia vitripennis] gi|451936070|gb|AGF87125.1| hairy [Nasonia vitripennis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 66/70 (94%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLN+LK LILDAMKKDPARHSKLEKADILEMTVKHLE +QRQQ+AL++A
Sbjct: 64  MEKRRRARINNCLNDLKALILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALASA 123

Query: 61  TDPHVLKSFK 70
           TDP+VL  F+
Sbjct: 124 TDPNVLNKFR 133

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166796106|ref|NP_001107765.1| hairy [Tribolium castaneum] gi|20269075|emb|CAD29886.1| helix-loop-helix transcription factor [Tribolium castaneum]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINN LNELKTLILDAMKKDPARHSKLEKADILEMTVKHL+N+QRQQ A+SAA
Sbjct: 42  MEKRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAA 101

Query: 61  TDPHVLKSFK 70
           TDP V+  F+
Sbjct: 102 TDPSVVSKFR 111

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014144|gb|EFA10592.1| hypothetical protein TcasGA2_TC012851 [Tribolium castaneum]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINN LNELKTLILDAMKKDPARHSKLEKADILEMTVKHL+N+QRQQ A+SAA
Sbjct: 42  MEKRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAA 101

Query: 61  TDPHVLKSFK 70
           TDP V+  F+
Sbjct: 102 TDPSVVSKFR 111

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855344|ref|XP_003703174.1| PREDICTED: protein hairy-like [Megachile rotundata]

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/70 (87%), Positives = 66/70 (94%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLN+LKTLILDAMKKDPARHSKLEKADILEMTVKHLE +QRQQ+AL+AA
Sbjct: 57  MEKRRRARINNCLNDLKTLILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALAAA 116

Query: 61  TDPHVLKSFK 70
           TDP VL  F+
Sbjct: 117 TDPTVLNKFR 126

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762302|ref|XP_393948.3| PREDICTED: protein hairy [Apis mellifera]

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/70 (87%), Positives = 67/70 (95%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINNCLN+LKTLILDAMKKDPARHSKLEKADILEMTVKHLE +QRQQ+AL+AA
Sbjct: 57  MEKRRRARINNCLNDLKTLILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALAAA 116

Query: 61  TDPHVLKSFK 70
           TDP+VL  F+
Sbjct: 117 TDPNVLNKFR 126

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194022542|gb|ACF32779.1| hairy [Tribolium confusum]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
           MEKRRRARINN LNELKTLILDAMKKDPARHSKLEKADILEMTVKHL+N+QRQQ A+SAA
Sbjct: 41  MEKRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAA 100

Query: 61  TDPHVLKSFK 70
           TDP V+  F+
Sbjct: 101 TDPSVVSKFR 110

Source: Tribolium confusum

Species: Tribolium confusum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0001168	337	h "hairy" [Drosophila melanoga	1.0	0.207	0.785	5.9e-25
FB|FBgn0010109	435	dpn "deadpan" [Drosophila mela	1.0	0.160	0.757	4.5e-24
UNIPROTKB|G3N2D5	304	HES1 "Transcription factor HES	1.0	0.230	0.7	1.9e-21
UNIPROTKB|Q3ZBG4	280	HES1 "Transcription factor HES	1.0	0.25	0.7	1.9e-21
UNIPROTKB|Q14469	280	HES1 "Transcription factor HES	1.0	0.25	0.7	1.9e-21
UNIPROTKB|I3LM61	280	HES1 "Uncharacterized protein"	1.0	0.25	0.7	1.9e-21
MGI|MGI:104853	282	Hes1 "hairy and enhancer of sp	1.0	0.248	0.7	1.9e-21
RGD|62081	281	Hes1 "hairy and enhancer of sp	1.0	0.249	0.7	1.9e-21
UNIPROTKB|Q6IRB2	267	hes1-a "Transcription factor H	1.0	0.262	0.7	2.4e-21
UNIPROTKB|Q5PPM5	267	hes1 "Transcription factor HES	1.0	0.262	0.7	3e-21

FB|FBgn0001168 h "hairy" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 55/70 (78%), Positives = 60/70 (85%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARINNCLNELKTLILDA KKDPARHSKLEKADILE TVKHL+ +QRQQ A+  A
Sbjct:    39 MEKRRRARINNCLNELKTLILDATKKDPARHSKLEKADILEKTVKHLQELQRQQAAMQQA 98

Query:    61 TDPHVLKSFK 70
              DP ++  FK
Sbjct:    99 ADPKIVNKFK 108

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS;IMP;IDA;TAS;IPI

GO:0070888 "E-box binding" evidence=IDA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005634 "nucleus" evidence=NAS

GO:0008407 "chaeta morphogenesis" evidence=NAS

GO:0007366 "periodic partitioning by pair rule gene" evidence=NAS;TAS

GO:0007460 "R8 cell fate commitment" evidence=NAS

GO:0007435 "salivary gland morphogenesis" evidence=IGI;IMP;TAS

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0007431 "salivary gland development" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0035289 "posterior head segmentation" evidence=TAS

GO:0035290 "trunk segmentation" evidence=TAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0031323 "regulation of cellular metabolic process" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IMP

FB|FBgn0010109 dpn "deadpan" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 53/70 (75%), Positives = 65/70 (92%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN+CLNELK+LIL+AMKKDPARH+KLEKADILEMTVKHL+++QRQQL ++  
Sbjct:    48 MEKRRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQQLNMAIQ 107

Query:    61 TDPHVLKSFK 70
             +DP V++ FK
Sbjct:   108 SDPSVVQKFK 117

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0007549 "dosage compensation" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007540 "sex determination, establishment of X:A ratio" evidence=IGI;NAS;IMP

GO:0005634 "nucleus" evidence=IC;IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007530 "sex determination" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IGI

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

UNIPROTKB|G3N2D5 HES1 "Transcription factor HES-1" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IEA

GO:2000737 "negative regulation of stem cell differentiation" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0097084 "vascular smooth muscle cell development" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0071820 "N-box binding" evidence=IEA

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0035910 "ascending aorta morphogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007262 "STAT protein import into nucleus" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IEA

GO:0003143 "embryonic heart tube morphogenesis" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

UNIPROTKB|Q3ZBG4 HES1 "Transcription factor HES-1" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISS

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0007262 "STAT protein import into nucleus" evidence=ISS

GO:0071820 "N-box binding" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISS

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISS

UNIPROTKB|Q14469 HES1 "Transcription factor HES-1" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0001889 "liver development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IMP;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISS

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0071820 "N-box binding" evidence=ISS

GO:0007262 "STAT protein import into nucleus" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISS

GO:0097150 "neuronal stem cell maintenance" evidence=IEP

GO:2000737 "negative regulation of stem cell differentiation" evidence=IMP

GO:0008134 "transcription factor binding" evidence=NAS

GO:0003677 "DNA binding" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0031018 "endocrine pancreas development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0035910 "ascending aorta morphogenesis" evidence=ISS

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=ISS

GO:0060412 "ventricular septum morphogenesis" evidence=ISS

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=ISS

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0097084 "vascular smooth muscle cell development" evidence=ISS

UNIPROTKB|I3LM61 HES1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IEA

GO:2000737 "negative regulation of stem cell differentiation" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0097084 "vascular smooth muscle cell development" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0071820 "N-box binding" evidence=IEA

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0035910 "ascending aorta morphogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007262 "STAT protein import into nucleus" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IEA

GO:0003143 "embryonic heart tube morphogenesis" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

MGI|MGI:104853 Hes1 "hairy and enhancer of split 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI;IMP;IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0001889 "liver development" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IMP

GO:0003281 "ventricular septum development" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006461 "protein complex assembly" evidence=IDA

GO:0007155 "cell adhesion" evidence=IGI

GO:0007219 "Notch signaling pathway" evidence=ISO;NAS;TAS

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007262 "STAT protein import into nucleus" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;IMP

GO:0008134 "transcription factor binding" evidence=NAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016477 "cell migration" evidence=IGI

GO:0021537 "telencephalon development" evidence=IGI;IMP

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IGI

GO:0021557 "oculomotor nerve development" evidence=IGI

GO:0021558 "trochlear nerve development" evidence=IGI

GO:0021575 "hindbrain morphogenesis" evidence=IGI

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISO

GO:0021915 "neural tube development" evidence=IGI

GO:0021983 "pituitary gland development" evidence=IGI;IMP

GO:0021984 "adenohypophysis development" evidence=IMP

GO:0030324 "lung development" evidence=IMP

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IGI

GO:0030901 "midbrain development" evidence=IGI

GO:0031016 "pancreas development" evidence=IMP

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0035910 "ascending aorta morphogenesis" evidence=IMP

GO:0042102 "positive regulation of T cell proliferation" evidence=IMP

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IDA

GO:0042668 "auditory receptor cell fate determination" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

GO:0045598 "regulation of fat cell differentiation" evidence=IMP

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IMP

GO:0045665 "negative regulation of neuron differentiation" evidence=IGI;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048469 "cell maturation" evidence=IGI

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IGI

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IDA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IDA

GO:0048844 "artery morphogenesis" evidence=IMP

GO:0050767 "regulation of neurogenesis" evidence=IGI

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0060164 "regulation of timing of neuron differentiation" evidence=IGI;IMP

GO:0060253 "negative regulation of glial cell proliferation" evidence=IDA

GO:0060412 "ventricular septum morphogenesis" evidence=IMP

GO:0060716 "labyrinthine layer blood vessel development" evidence=IMP

GO:0061009 "common bile duct development" evidence=IMP

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IMP

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IMP

GO:0071820 "N-box binding" evidence=IDA

GO:0090102 "cochlea development" evidence=IGI;IMP

GO:0097084 "vascular smooth muscle cell development" evidence=IMP

GO:0097150 "neuronal stem cell maintenance" evidence=ISO;IMP

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IMP

GO:2000737 "negative regulation of stem cell differentiation" evidence=ISO

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISO

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISO

GO:2000981 "negative regulation of inner ear receptor cell differentiation" evidence=IMP

RGD|62081 Hes1 "hairy and enhancer of split 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L++LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA;IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISO;ISS

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=ISO

GO:0003281 "ventricular septum development" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0007262 "STAT protein import into nucleus" evidence=ISO;ISS

GO:0007389 "pattern specification process" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0021537 "telencephalon development" evidence=ISO

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=ISO

GO:0021557 "oculomotor nerve development" evidence=ISO

GO:0021558 "trochlear nerve development" evidence=ISO

GO:0021575 "hindbrain morphogenesis" evidence=ISO

GO:0021861 "forebrain radial glial cell differentiation" evidence=IDA

GO:0021915 "neural tube development" evidence=ISO

GO:0021983 "pituitary gland development" evidence=ISO

GO:0021984 "adenohypophysis development" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO

GO:0030901 "midbrain development" evidence=ISO

GO:0031016 "pancreas development" evidence=ISO

GO:0035019 "somatic stem cell maintenance" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=ISO

GO:0035910 "ascending aorta morphogenesis" evidence=ISO

GO:0042102 "positive regulation of T cell proliferation" evidence=ISO

GO:0042491 "auditory receptor cell differentiation" evidence=ISO

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISO;ISS

GO:0042668 "auditory receptor cell fate determination" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=ISO;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045165 "cell fate commitment" evidence=ISO

GO:0045596 "negative regulation of cell differentiation" evidence=ISO

GO:0045598 "regulation of fat cell differentiation" evidence=ISO

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045747 "positive regulation of Notch signaling pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=ISO

GO:0046331 "lateral inhibition" evidence=ISO

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISO;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048469 "cell maturation" evidence=ISO

GO:0048505 "regulation of timing of cell differentiation" evidence=ISO

GO:0048538 "thymus development" evidence=ISO

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=ISO

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISO;ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISO;ISS

GO:0048844 "artery morphogenesis" evidence=ISO

GO:0050767 "regulation of neurogenesis" evidence=ISO

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060164 "regulation of timing of neuron differentiation" evidence=ISO

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISO;ISS

GO:0060412 "ventricular septum morphogenesis" evidence=ISO

GO:0060716 "labyrinthine layer blood vessel development" evidence=ISO

GO:0061009 "common bile duct development" evidence=ISO

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=ISO

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=ISO

GO:0071820 "N-box binding" evidence=ISO;ISS

GO:0090102 "cochlea development" evidence=ISO

GO:0097084 "vascular smooth muscle cell development" evidence=ISO

GO:0097150 "neuronal stem cell maintenance" evidence=ISO;IDA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=ISO

GO:2000737 "negative regulation of stem cell differentiation" evidence=ISO

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISO;ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=IDA

GO:2000981 "negative regulation of inner ear receptor cell differentiation" evidence=ISO

UNIPROTKB|Q6IRB2 hes1-a "Transcription factor HES-1-A" [Xenopus laevis (taxid:8355)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L +LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q++ + +
Sbjct:    42 MEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMSAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048635 "negative regulation of muscle organ development" evidence=IMP

UNIPROTKB|Q5PPM5 hes1 "Transcription factor HES-1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/70 (70%), Positives = 58/70 (82%)

Query:     1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA 60
             MEKRRRARIN  L +LKTLILDA+KKD +RHSKLEKADILEMTVKHL N+QR Q+  + +
Sbjct:    42 MEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALS 101

Query:    61 TDPHVLKSFK 70
             TDP VL  ++
Sbjct:   102 TDPSVLGKYR 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048635 "negative regulation of muscle organ development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZBG4	HES1_BOVIN	No assigned EC number	0.7	1.0	0.25	yes	N/A
Q26263	DPN_DROME	No assigned EC number	0.7571	1.0	0.1609	yes	N/A
P35428	HES1_MOUSE	No assigned EC number	0.7	1.0	0.2482	yes	N/A
Q04666	HES1_RAT	No assigned EC number	0.7	1.0	0.2491	yes	N/A
Q14469	HES1_HUMAN	No assigned EC number	0.7	1.0	0.25	yes	N/A
Q5PPM5	HES1_XENTR	No assigned EC number	0.7	1.0	0.2621	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-09
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-08
smart00353	53	smart00353, HLH, helix loop helix domain	6e-08

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 47.1 bits (113), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQ 51
           E+RRR RIN+   EL+ L+          + KL KA+IL + +++++++Q
Sbjct: 8  RERRRRDRINDAFEELRELLP------TPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 45.3 bits (108), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54
           E+RRR RIN+  +EL++L+            KL KA+IL   V +++++Q   
Sbjct: 11 RERRRRERINDAFDELRSLLPTL-----PPSKKLSKAEILRKAVDYIKSLQELL 59

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 43.7 bits (104), Expect = 6e-08
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54
           E+RRR +IN   +EL++L+    K     + KL KA+IL + +++++++Q + 
Sbjct: 3  RERRRRRKINEAFDELRSLLPTLPK-----NKKLSKAEILRLAIEYIKSLQEEL 51

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG4304|consensus	250		99.91
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.53
smart00353	53	HLH helix loop helix domain.	99.48
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.44
KOG1318|consensus	411		99.1
KOG3561|consensus	803		99.0
KOG1319|consensus	229		98.43
KOG3560|consensus	712		98.06
KOG0561|consensus	373		97.88
KOG2483|consensus	232		97.4
KOG4029|consensus	228		97.07
KOG3960|consensus	284		97.03
PLN03217	93	transcription factor ATBS1; Provisional	96.75
KOG2588|consensus	953		96.54
KOG3558|consensus	768		95.27
KOG3910|consensus	632		94.0
KOG3559|consensus	598		93.65
KOG4395|consensus	285		85.17

>KOG4304|consensus

Probab=99.91  E-value=3.1e-25  Score=160.02  Aligned_cols=70  Identities=60%  Similarity=0.862  Sum_probs=63.6

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhhcC-CChhhhhhcC
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSAA-TDPHVLKSFK   70 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~~~-~~~~~~~~~~   70 (70)
                      ||||||+|||+||++||+||++++++++..++|||||||||+||+||+.|++.+..+... .++.+.++|+
T Consensus        39 ~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~~d~f~  109 (250)
T KOG4304|consen   39 LEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALPVDSFR  109 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccccccccchhhh
Confidence            799999999999999999999999998888999999999999999999999988776655 6677777774

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.53  E-value=1.2e-14  Score=82.32  Aligned_cols=48  Identities=38%  Similarity=0.660  Sum_probs=42.3

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQ   51 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq   51 (70)
                      .|++||++||.+|++|+.+||.+...   ...|++|++||+.||+||+.||
T Consensus         8 ~Er~RR~~i~~~~~~L~~llp~~~~~---~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    8 RERRRRDRINDCFDELRELLPSCSAG---SSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSSHHCC---TTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhcc---ccccCCHHHHHHHHHHHHHHhC
Confidence            48999999999999999999996311   2478999999999999999987

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>smart00353 HLH helix loop helix domain

Probab=99.48  E-value=6.2e-14  Score=78.15  Aligned_cols=49  Identities=33%  Similarity=0.606  Sum_probs=44.0

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      .||+||++||.+|..|+.+||.+.     ...|++|++||..||+||+.|+.+.
T Consensus         3 ~Er~RR~~~n~~~~~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~~   51 (53)
T smart00353        3 RERRRRRKINEAFDELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEEL   51 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999753     1378999999999999999999876

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.44  E-value=1.9e-13  Score=77.20  Aligned_cols=49  Identities=37%  Similarity=0.561  Sum_probs=43.8

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      .||+||++||.+|++|+.+||...     ...|++|++||+.||+||+.|+.+.
T Consensus        11 ~Er~RR~~~n~~~~~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083          11 RERRRRERINDAFDELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999853     2479999999999999999999864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>KOG1318|consensus

Probab=99.10  E-value=7.5e-11  Score=90.64  Aligned_cols=51  Identities=29%  Similarity=0.438  Sum_probs=46.2

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      ||||||+.||..|.+|..|||.|...    ..||+|..||..+++|++.||+...
T Consensus       240 VERRRR~nIN~~IkeLg~liP~~~~~----~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  240 VERRRRENINDRIKELGQLIPKCNSE----DMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcc----hhhcccchhhHHHHHHHHHHHHHHH
Confidence            79999999999999999999998543    3799999999999999999997765

>KOG3561|consensus

Probab=99.00  E-value=4.2e-10  Score=92.01  Aligned_cols=50  Identities=32%  Similarity=0.539  Sum_probs=45.6

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||||||.+|..|++|.+|||.+..    ...|+||-.||++||+|||.++...
T Consensus        27 ~EKrRRdq~N~yI~ELs~Mvp~~~~----~~RK~DK~tVLr~aV~~lr~~k~~~   76 (803)
T KOG3561|consen   27 IEKRRRDQMNKYIEELSEMVPTNAS----LSRKPDKLTVLRMAVDHLRLIKEQE   76 (803)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcchh----cccCchHHHHHHHHHHHHHHHhhhh
Confidence            6999999999999999999999753    3489999999999999999999875

>KOG1319|consensus

Probab=98.43  E-value=4e-07  Score=65.29  Aligned_cols=53  Identities=28%  Similarity=0.452  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      |++||+-||...+.|+.|||.|..++. ..-|+.||-||..|++||..|.++..
T Consensus        70 EqkRRdAIk~GYddLq~LvP~cq~~ds-~g~KlskA~ILqksidyi~~L~~~k~  122 (229)
T KOG1319|consen   70 EQKRRDAIKRGYDDLQTLVPTCQQQDS-IGQKLSKAIILQKTIDYIQFLHKEKK  122 (229)
T ss_pred             HHHHHHHHHhchHHHHHhccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999865442 23599999999999999999987764

>KOG3560|consensus

Probab=98.06  E-value=2.6e-06  Score=68.59  Aligned_cols=42  Identities=36%  Similarity=0.476  Sum_probs=38.0

Q ss_pred             hHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHH
Q psy9718           3 KRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLE   48 (70)
Q Consensus         3 krRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk   48 (70)
                      ||-|||+|..|+.|.+|||-.    .+.++||||.+||.++|.||+
T Consensus        34 KRHRdRLNaELD~lAsLLPfp----qdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   34 KRHRDRLNAELDHLASLLPFP----QDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             hhHHHHhhhHHHHHHHhcCCC----HHHHhhhhhhhhhhhhHHHHH
Confidence            789999999999999999963    245799999999999999998

>KOG0561|consensus

Probab=97.88  E-value=1.8e-05  Score=60.16  Aligned_cols=48  Identities=29%  Similarity=0.456  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      ||||=.-||..|..|++|||.+   ++   .||.||.||..|-+|+-.|.++..
T Consensus        68 ERRRMQSINAGFqsLr~LlPr~---eG---EKLSKAAILQQTa~yI~~Le~~Kt  115 (373)
T KOG0561|consen   68 ERRRMQSINAGFQSLRALLPRK---EG---EKLSKAAILQQTADYIHQLEGHKT  115 (373)
T ss_pred             HHHHHHhhhHHHHHHHHhcCcc---cc---hhhHHHHHHHHHHHHHHHHHhccc
Confidence            6677788999999999999985   22   799999999999999999987664

>KOG2483|consensus

Probab=97.40  E-value=0.00031  Score=50.89  Aligned_cols=50  Identities=26%  Similarity=0.536  Sum_probs=40.8

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      .||+||+.|-.||+.|+.+||...+     ...-.-+.||..++.|++.|+....
T Consensus        66 LEk~RRahlk~~~~~Lk~~vP~~~~-----~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   66 LEKRRRAHLKDCFESLKDSVPLLNG-----ETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCC-----cchhhhhHhhhhHHHHHHHHHhHHH
Confidence            4899999999999999999997521     1222378999999999999987664

>KOG4029|consensus

Probab=97.07  E-value=0.00028  Score=49.70  Aligned_cols=50  Identities=20%  Similarity=0.370  Sum_probs=41.4

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      ||.|=.-+|..+.+|+.+||.....    ..|+-|.++|..||+||+.|+.-..
T Consensus       117 ER~Rv~~vN~~f~~Lr~~lP~~~~~----~kklSKveTLr~A~~YI~~L~~lL~  166 (228)
T KOG4029|consen  117 ERQRVQSVNSAFAELRALLPTEPPQ----SKKLSKVETLRLATSYIRYLTKLLA  166 (228)
T ss_pred             hhhcccchhhhhHHHHhcCCCCCCc----ccccCcccchHHHHHHHHHHHHHhc
Confidence            4555567999999999999986321    4899999999999999999987654

>KOG3960|consensus

Probab=97.03  E-value=0.0015  Score=48.54  Aligned_cols=47  Identities=28%  Similarity=0.515  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      ||||=.++|+.|+.||.=--.    .|  +-+|-|.+||..+|+||..||.-.
T Consensus       126 ERRRLkKVNEAFE~LKRrT~~----NP--NQRLPKVEILRsAI~YIE~Lq~LL  172 (284)
T KOG3960|consen  126 ERRRLKKVNEAFETLKRRTSS----NP--NQRLPKVEILRSAIRYIERLQALL  172 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC----Cc--cccccHHHHHHHHHHHHHHHHHHH
Confidence            677779999999999863222    22  367999999999999999888644

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.75  E-value=0.006  Score=38.99  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=41.3

Q ss_pred             HHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718           7 ARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS   58 (70)
Q Consensus         7 ~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~   58 (70)
                      +-||+-+..|+.|+|+....-  +..|+.-+.||..|-.|++.|++.+-..+
T Consensus        20 dqi~dLvsKLq~llPe~r~~r--~s~k~saskvLqEtC~YIrsLhrEvDdLS   69 (93)
T PLN03217         20 DQINDLIIKLQQLLPELRDSR--RSDKVSAARVLQDTCNYIRNLHREVDDLS   69 (93)
T ss_pred             HHHHHHHHHHHHHChHHHhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999974312  24789999999999999999999885443

>KOG2588|consensus

Probab=96.54  E-value=0.0019  Score=54.48  Aligned_cols=48  Identities=33%  Similarity=0.511  Sum_probs=43.6

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      ||||=|--||+.+.+||.+||..       ..|+.|..+|.-+++|++.++....
T Consensus       283 IEKRYRsSINDKI~eLk~lV~g~-------~aKl~kSavLr~ai~~i~dl~~~nq  330 (953)
T KOG2588|consen  283 IEKRYRSSINDKIIELKDLVPGT-------EAKLNKSAVLRKAIDYIEDLQGYNQ  330 (953)
T ss_pred             HHHHhhcchhHHHHHHHHhcCcc-------HhhhhhhhhHHHHHHHHHHhhcccc
Confidence            79999999999999999999975       4899999999999999999987653

>KOG3558|consensus

Probab=95.27  E-value=0.015  Score=48.20  Aligned_cols=42  Identities=33%  Similarity=0.408  Sum_probs=35.1

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHH
Q psy9718           4 RRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLEN   49 (70)
Q Consensus         4 rRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~   49 (70)
                      =||-+=|.-|.+|..+||-.    ....+.||||+|+..||.|||.
T Consensus        56 sRRsKEn~~FyeLa~~lPlp----~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   56 SRRSKENEEFYELAKLLPLP----AAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhcccchHHHHHHHHhCCCc----chhhhhhhhHHHHHHHHHHHHH
Confidence            37888899999999999942    1235789999999999999985

>KOG3910|consensus

Probab=94.00  E-value=0.14  Score=41.61  Aligned_cols=51  Identities=22%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhhc
Q psy9718           5 RRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA   59 (70)
Q Consensus         5 RR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~~   59 (70)
                      |=.-||+.|.+|..|.-.+.+.+.. .   .|.=||-++|..|=.|.+|+....+
T Consensus       537 RVRDINeAfKELGRMCqlHlkSeKp-Q---TKLgILhqAVsVIlsLEQQVRERNL  587 (632)
T KOG3910|consen  537 RVRDINEAFKELGRMCQLHLKSEKP-Q---TKLGILHQAVSVILSLEQQVRERNL  587 (632)
T ss_pred             ehhhHHHHHHHHHHHHHHhhcccCc-c---hhhhHHHHHHHHHHHHHHHHHHccC
Confidence            3345999999999999887664421 2   5669999999999999999976653

>KOG3559|consensus

Probab=93.65  E-value=0.065  Score=42.84  Aligned_cols=44  Identities=32%  Similarity=0.348  Sum_probs=37.4

Q ss_pred             hHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHH
Q psy9718           3 KRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENM   50 (70)
Q Consensus         3 krRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~l   50 (70)
                      +-||+.=|-.+.+|..++|-+..    ..+.+|||+|..+|-.|||.-
T Consensus        10 ~tRRekEN~EF~eLAklLPLa~A----ItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen   10 RTRREKENYEFYELAKLLPLASA----ITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             HHHHHhhcchHHHHHhhccchhh----hhhccchhhhhhHHHHHHHHH
Confidence            56999999999999999997532    235699999999999999953

>KOG4395|consensus

Probab=85.17  E-value=1.5  Score=32.89  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      |++|=-.+|..|+.|+..+|+-     ....||.|-+-|.|+-.|+-.|-.-.
T Consensus       182 Errrm~gLN~AfD~Lr~v~p~~-----~~d~~LSkyetLqmaq~yi~~l~~~l  229 (285)
T KOG4395|consen  182 ERRRMNGLNSAFDRLRLVVPDG-----DSDKKLSKYETLQMAQGYILALGCLL  229 (285)
T ss_pred             HHHHhhhHHHHHHHHHHhcCCC-----CccchhhhhhHHHHHHHHHhhhHHhh
Confidence            5555577899999999999873     23589999999999999998765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1a0a_A	63	BHLH, protein (phosphate system positive regulator	2e-08
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	5e-07
4f3l_A	361	Mclock, circadian locomoter output cycles protein	1e-05
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	4e-05
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	3e-04
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	6e-04

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 44.4 bits (105), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2  EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
          E+ RR R+   L+EL +LI    K+     +   KA  +E   +++ ++Q+ 
Sbjct: 10 EQARRNRLAVALHELASLIPAEWKQQNVS-AAPSKATTVEAACRYIRHLQQN 60

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 41.2 bits (97), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54
          +E+RRR +INN + +L  +I D+  +     S   K  IL     +++ +++  
Sbjct: 12 VERRRRDKINNWIVQLSKIIPDSSMESTK--SGQSKGGILSKASDYIQELRQSN 63

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 2  EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHL 47
          EK+RR + N  + EL +++       P    K++K+ +L+ ++  L
Sbjct: 20 EKKRRDQFNVLIKELGSML-------PGNARKMDKSTVLQKSIDFL 58

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 38.1 bits (88), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 2  EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHL 47
          EKRRR ++N+ ++EL +L+        A   KL+K  +L M V+H+
Sbjct: 21 EKRRRDKMNSFIDELASLVPT----CNAMSRKLDKLTVLRMAVQHM 62

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
          +E++RR  I +  + L+  +         +  K  +A IL+   ++++ M+R+      
Sbjct: 19 LERKRRDHIKDSFHSLRDSVPS------LQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 33.5 bits (77), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 2  EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
          EKR R+ IN+ + ELK L+           +KL K+ +L   + ++  +Q     L  
Sbjct: 14 EKRYRSSINDKIIELKDLV-------VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.75
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.74
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.69
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.6
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.57
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.55
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.45
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.45
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.35
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.33
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.29
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.28
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.14
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.99
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.97
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.94
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.93
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.25

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.75  E-value=6.6e-19  Score=106.54  Aligned_cols=48  Identities=33%  Similarity=0.622  Sum_probs=43.2

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQR   52 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~   52 (70)
                      +||+||++||.+|++|++|||.+..    ..+|+|||+||++||+||+.|+.
T Consensus        16 ~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           16 IEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence            4999999999999999999999852    24799999999999999999874

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.74  E-value=7.1e-19  Score=103.49  Aligned_cols=53  Identities=26%  Similarity=0.377  Sum_probs=47.0

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +|++||+|||.+|.+|++|||.+...++ ..+|++||+||++||+||+.||+++
T Consensus         9 aEr~RR~rIn~~~~~L~~LlP~~~~~~~-~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            9 AEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             GTHHHHHHHHHHHHHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccccc-cCCcccHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999999999876542 2479999999999999999999865

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.69  E-value=8e-18  Score=101.63  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=43.9

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL   55 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~   55 (70)
                      +||+||++||.+|.+|++|||+.       ..|+||++||++||+||+.||.+..
T Consensus        15 iErrRRd~IN~~i~eL~~LvP~~-------~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B           15 SEKKRRDQFNVLIKELGSMLPGN-------ARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSC-------CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHhCCCC-------CCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999952       3799999999999999999998874

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.60  E-value=3.5e-17  Score=95.48  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=44.7

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||+||++||.+|.+|++|||.+....+  ..|++||+||++||+||+.||++.
T Consensus        12 ~Er~RR~~in~~~~~L~~lvP~~~~~~~--~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A           12 VERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCCSS--TTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCcccccc--cCCCCHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999999998743221  258999999999999999999764

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.57  E-value=2.3e-15  Score=91.79  Aligned_cols=50  Identities=32%  Similarity=0.509  Sum_probs=45.5

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||++||.+|.+|++|||.+       ..|++||+||..||+||+.|+.+....
T Consensus        13 ~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L   62 (82)
T 1am9_A           13 IEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999973       379999999999999999999988654

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.55  E-value=2.5e-15  Score=97.12  Aligned_cols=54  Identities=33%  Similarity=0.488  Sum_probs=46.2

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS   58 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~   58 (70)
                      +||+||++||.+|.+|++|||.+...    ..|++||+||++||+||+.||.+...+.
T Consensus        34 ~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~~~l~   87 (118)
T 4ati_A           34 IERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQQRAK   87 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999987432    2689999999999999999999887654

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=1.2e-13  Score=83.32  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=45.6

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||..||.+|+.|+.+||.+.      ..|++|++||..||+||+.|+.+....
T Consensus        19 ~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A           19 LERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999863      268999999999999999999887654

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.45  E-value=8.2e-14  Score=84.37  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=45.3

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||+.||.+|+.|+++||.+.      ..|++|++||..||+||+.|+.+....
T Consensus         9 ~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~~~l   59 (83)
T 1nkp_B            9 LERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999863      268999999999999999999876543

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.35  E-value=4e-13  Score=96.50  Aligned_cols=47  Identities=23%  Similarity=0.464  Sum_probs=42.5

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||+||++||..|.+|++|||.       ..+|+|||+||++||.||+.++...
T Consensus        19 ~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           19 SEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            6999999999999999999993       1479999999999999999998654

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.33  E-value=7.6e-13  Score=96.29  Aligned_cols=49  Identities=33%  Similarity=0.608  Sum_probs=43.5

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ   53 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~   53 (70)
                      +||+||++||..|.+|+.|||.+..    ..+|+||++||++||.|||.++..
T Consensus        20 ~ek~rR~~~n~~~~~L~~l~p~~~~----~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           20 IEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHH----CSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcchHHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHHhhcc
Confidence            5899999999999999999998632    248999999999999999999843

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.29  E-value=3.9e-12  Score=78.54  Aligned_cols=51  Identities=20%  Similarity=0.297  Sum_probs=45.1

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA   56 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~   56 (70)
                      +||+||+.||.+|..|+.+||....     ..|++|++||..|++||+.|+.+...
T Consensus        13 ~ER~RR~~ln~~f~~Lr~~vP~~~~-----~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A           13 LERQRRNELKRSFFALRDQIPELEN-----NEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGTT-----CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999998521     36999999999999999999988654

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.28  E-value=8.9e-12  Score=75.50  Aligned_cols=54  Identities=26%  Similarity=0.356  Sum_probs=45.1

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS   58 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~   58 (70)
                      +||+||+.||.+|++|+.+||.+...+    .++.|++||..||+||+.|+++.....
T Consensus        12 ~ER~Rr~~IN~~f~~Lr~~vP~~~~~~----K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A           12 LERKRRRDINEAFRELGRMCQMHLKSD----KAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCCCCcc----ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999754211    233799999999999999999987643

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.14  E-value=2.5e-11  Score=73.90  Aligned_cols=52  Identities=25%  Similarity=0.330  Sum_probs=45.1

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||+.||.||..|+++||...     ...|+.|++||..|++||+.|+......
T Consensus         8 ~ER~RR~~lk~~f~~Lr~~vP~~~-----~~~k~sk~~iL~kA~~yI~~L~~~~~~l   59 (80)
T 1nlw_A            8 MEKNRRAHLRLSLEKLKGLVPLGP-----DSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCS-----SSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999742     1478899999999999999999887543

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.99  E-value=3.5e-10  Score=65.69  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      |++|+.-||.+|+.|+.+||...     ...|+.|.+||..|++||..|+...
T Consensus        10 ER~R~~~iN~af~~LR~~lP~~~-----~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B           10 ERNRMHGLNAALDNLRKVVPCYS-----KTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCC-----SSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHccCCC-----CcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999742     2479999999999999999999765

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.97  E-value=3.6e-10  Score=67.22  Aligned_cols=47  Identities=28%  Similarity=0.504  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      |++|+..||++|+.|+.+||..    +  ..|+.|++||..|++||..|+...
T Consensus        20 ER~R~~~iN~af~~LR~~iP~~----~--~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           20 ERRRLSKVNEAFETLKRSTSSN----P--NQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCSC----T--TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC----C--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999963    2  369999999999999999998753

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.94  E-value=6.3e-10  Score=68.92  Aligned_cols=48  Identities=33%  Similarity=0.479  Sum_probs=41.4

Q ss_pred             HHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           6 RARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         6 R~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      |..||..+.+|.+|||++.+  +  ..|++|+.||..||+|++.||+....+
T Consensus         4 R~nIN~~I~EL~~LiP~~~~--~--~~k~nKg~IL~ksvdYI~~Lq~e~~r~   51 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSND--P--DMRWNKGTILKASVDYIRKLQREQQRA   51 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCC--T--TCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCC--c--ccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999998632  2  479999999999999999998866543

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.93  E-value=2.7e-10  Score=68.36  Aligned_cols=46  Identities=20%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy9718           2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQR   52 (70)
Q Consensus         2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~   52 (70)
                      ||+|...||.+|+.|+.+||...     ...|+.|.+||..+++||..||.
T Consensus        22 ER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           22 PLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence            78888999999999999999842     24799999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.25  E-value=1.7e-06  Score=54.71  Aligned_cols=48  Identities=21%  Similarity=0.337  Sum_probs=40.0

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q psy9718           4 RRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA   56 (70)
Q Consensus         4 rRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~   56 (70)
                      .|=.-+|++|+.|+.+||...     ...||.|.++|.+++.||..|+.-...
T Consensus        35 ~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           35 SLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            344559999999999999742     247999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-07
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-07
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	0.001

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
          +E+RRR +INN + +L  +I D+  +     S   K  IL     +++ +++ 
Sbjct: 12 VERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQS 62

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (95), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
           E+ RR R+   L+EL +LI    K+     +   KA  +E   +++ ++Q+ 
Sbjct: 9  AEQARRNRLAVALHELASLIPAEWKQQ-NVSAAPSKATTVEAACRYIRHLQQN 60

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 1  MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
          +E++RR  I +  + L+  +         +  K  +A IL+   ++++ M+R+      
Sbjct: 9  LERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.68
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.53
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.49
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.43
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.28

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=5.6e-18  Score=97.47  Aligned_cols=53  Identities=26%  Similarity=0.377  Sum_probs=46.3

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||+||++||.+|++|++|||.+...++ ...|++||+||++||+||+.||+++
T Consensus         9 ~Er~RR~~in~~~~~L~~llP~~~~~~~-~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           9 AEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             GTHHHHHHHHHHHHHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccccC-CcccccHHHHHHHHHHHHHHHHHhh
Confidence            5999999999999999999998754432 2489999999999999999998764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-16  Score=91.29  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=45.1

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||+||++||.+|++|++|||.+....+  ..|++|++||+.||+||+.||.+.
T Consensus        12 ~Er~RR~~in~~f~~L~~lvP~~~~~~~--~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_          12 VERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCCSS--TTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccCC--CCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4999999999999999999998644333  479999999999999999998653

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.8e-15  Score=88.11  Aligned_cols=49  Identities=31%  Similarity=0.492  Sum_probs=44.4

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA   56 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~   56 (70)
                      +||+||++||++|++|++|||.+       ..|++|++||+.||+||+.|+.+...
T Consensus        13 ~Er~RR~~in~~~~~L~~llP~~-------~~k~~K~~iL~~a~~yI~~L~~~~~~   61 (80)
T d1am9a_          13 IEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSNQK   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999964       36899999999999999999987754

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=5.7e-15  Score=86.03  Aligned_cols=48  Identities=25%  Similarity=0.412  Sum_probs=43.0

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ   54 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~   54 (70)
                      +||+||++||++|+.|++|||.+.      ..|++|++||..||+||+.||...
T Consensus        19 ~Er~Rr~~in~~~~~L~~llP~~~------~~k~sK~~iL~~Ai~YI~~Lq~~l   66 (68)
T d1mdya_          19 RERRRLSKVNEAFETLKRSTSSNP------NQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSCT------TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999752      258999999999999999999764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=86.14  Aligned_cols=52  Identities=25%  Similarity=0.330  Sum_probs=45.3

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||++||.+|++|+++||...     ...|++|++||..||+||+.|+......
T Consensus         8 ~Er~RR~~in~~f~~L~~llP~~~-----~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           8 MEKNRRAHLRLSLEKLKGLVPLGP-----DSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCS-----SSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999642     1368999999999999999999877543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=84.37  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||++||.+|++|+++||.+.      ..|++|++||+.||.||+.|+.+....
T Consensus         9 ~Er~RR~~in~~f~~L~~llP~~~------~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (83)
T d1nkpb_           9 LERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999752      258999999999999999998876543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.5e-14  Score=84.72  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=45.3

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718           1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL   57 (70)
Q Consensus         1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~   57 (70)
                      +||+||+.||++|++|+++||+...     ..|++|++||..||+||+.|+.+....
T Consensus        13 ~Er~RR~~in~~f~~Lr~llP~~~~-----~~k~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_          13 LERQRRNELKRSFFALRDQIPELEN-----NEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGTT-----CTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC-----CCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999997521     368999999999999999999887543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.4e-13  Score=75.63  Aligned_cols=46  Identities=26%  Similarity=0.471  Sum_probs=41.2

Q ss_pred             HHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718           6 RARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS   58 (70)
Q Consensus         6 R~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~   58 (70)
                      |++||++|..|+++||.+       ..|++||+||..||+||+.|+.+.....
T Consensus         1 R~~in~~f~~L~~lvP~~-------~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~   46 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGT-------DAKMHKSGVLRKAIDYIKYLQQVNHKLR   46 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCS-------SCCCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCC-------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999974       2689999999999999999999987653