Psyllid ID: psy9925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECII
Secondary Structure (PSIPRED)
cccccccccEEEEccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHccccccccccccccccccEEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEccHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEccccHccccccccccccEEEcccccccccccEEEcccccEEcccccHcEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHcccHcccccccccccccEEccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEcccccEcHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGGTTVLNGLMycrgdssdydeyeklgatgwgyknvlpyflkseHNLQYNVRKVMGGTTVLNGLMycrgdssdydeyeklgatgwgyknvlpyflksehnlqynssqnhargglltvshyndlpdlGHTLLAAGrelgyptdvdighgrlregfyRAQMTTRNGARLSAAKATDFVECII
Flexible Loop (DISEMBL)
mggttvlnglmYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMttrngarlsaakatdfvecii
Low Complexity Region (SEG)
MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECII
Disordered region (IsUnstruct)
*****VLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVEC**
Disordered Region (DISOPRED)
****TVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECII
Disordered Region (DISEMBL)
MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECII
Disordered Region (DISPRO)
**GTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVECII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
P18172	625	Glucose dehydrogenase [ac	yes	N/A	0.655	0.188	0.475	1e-24
P18173	625	Glucose dehydrogenase [ac	yes	N/A	0.655	0.188	0.483	6e-24
Q8D3K2	560	Choline dehydrogenase OS=	no	N/A	0.661	0.212	0.380	2e-16
B9JBA2	549	Choline dehydrogenase OS=	yes	N/A	0.722	0.236	0.364	7e-16
C3MIE4	549	Choline dehydrogenase OS=	no	N/A	0.644	0.211	0.393	8e-16
A6U6Y8	549	Choline dehydrogenase OS=	yes	N/A	0.644	0.211	0.393	1e-15
P54223	549	Choline dehydrogenase OS=	yes	N/A	0.644	0.211	0.393	1e-15
Q7MF12	560	Choline dehydrogenase OS=	no	N/A	0.661	0.212	0.380	2e-15
A6X2G7	549	Choline dehydrogenase OS=	no	N/A	0.655	0.214	0.383	3e-15
A7N2P9	569	Choline dehydrogenase OS=	yes	N/A	0.644	0.203	0.379	3e-15

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 82/122 (67%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS--SQNHA 110
           KV+GGT+V+NG+MY RG+  DYD++   G  GW Y++VLP+F KSE NL+ ++  ++ HA
Sbjct: 145 KVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHA 204

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
           +GGLL V  +   P L + LL AG E+G+   V   +G+   GF  AQMT RNG R S+A
Sbjct: 205 KGGLLPVGKFPYNPPLSYALLKAGEEMGF--SVQDLNGQNSTGFMIAQMTARNGIRYSSA 262

Query: 171 KA 172
           +A
Sbjct: 263 RA 264

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS--SQNHA 110
           KV+GGT+VLNG+MY RG+  DYD++   G  GW Y +VLP+F KSE NL  +   ++ HA
Sbjct: 145 KVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHA 204

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
           +GGLL V  +   P L + +L AG ELG+   V   +G+   GF  AQMT RNG R S+A
Sbjct: 205 KGGLLPVGKFPYNPPLSYAILKAGEELGF--SVHDLNGQNSTGFMIAQMTARNGIRYSSA 262

Query: 171 KA 172
           +A
Sbjct: 263 RA 264

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+  LPYF ++E+ +          G
Sbjct: 83  KVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGGDG 142

Query: 113 GLLTVS-HYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAK 171
            L T + +   L  L    + AG+E GYP   D  +G  +EGF    MT +NG R S + 
Sbjct: 143 PLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY-NGYQQEGFGPMHMTVKNGVRASTSN 201

Query: 172 A 172
           A
Sbjct: 202 A 202

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio vulnificus (taxid: 672)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 21/151 (13%)

Query: 31  WGYKNVLPYFLKSEHNLQYNVR-------KVMGGTTVLNGLMYCRGDSSDYDEYEKLGAT 83
           WGY         SE   Q N R       KV+GG++ +NG++Y RG + D++ +E+LGA 
Sbjct: 60  WGYL--------SEPEPQLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQ 111

Query: 84  GWGYKNVLPYFLKSEHNLQYNSSQNHARG--GLLTVSHYNDLPDLGHTLLAAGRELGYPT 141
           GW Y +VLPYF + EH+   +  +   RG  G L V   +    L H  + AG++ G+  
Sbjct: 112 GWAYADVLPYFKRMEHS---HGGEEGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEA 168

Query: 142 DVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
             D   G+ +EGF   + TT  G R SAA A
Sbjct: 169 TEDYNGGK-QEGFGLMEQTTWMGRRWSAATA 198

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG + D+D +E+LGA GW Y +VLPYF + EH+   +  ++  RG
Sbjct: 81  KVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHS---HGGEDGWRG 137

Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
             G L V        L H  + AG++ G+    D  +G  +EGF   + TT  G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDY-NGSKQEGFGLMEQTTWRGRRWSAA 196

Query: 171 KA 172
            A
Sbjct: 197 SA 198

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betA PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG S D+D +E+LGA GW Y +VLPY+ + EH+   +  +   RG
Sbjct: 81  KVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHS---HGGEEGWRG 137

Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
             G L V        L H  + AG++ G+    D  +G  +EGF   + TT  G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDY-NGSKQEGFGLMEQTTWRGRRWSAA 196

Query: 171 KA 172
            A
Sbjct: 197 SA 198

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA PE=3 SV=2

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG S D++ +E+LGA GW Y +VLPY+ + EH+   +  +   RG
Sbjct: 81  KVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHS---HGGEEGWRG 137

Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
             G L V        L H  + AG+E G+    D  +G  +EGF   + TT  G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDY-NGSKQEGFGLMEQTTWRGRRWSAA 196

Query: 171 KA 172
            A
Sbjct: 197 SA 198

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+  LPYF ++E+ +          G
Sbjct: 83  KVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGGDG 142

Query: 113 GLLTVS-HYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAK 171
            L T + +   L  L    + AG+E GYP   D  +G  +EGF    MT +NG R S + 
Sbjct: 143 PLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY-NGYQQEGFGPMHMTVKNGVRASTSN 201

Query: 172 A 172
           A
Sbjct: 202 A 202

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG + DYD + + GA GW Y +VLPYF + E++           G
Sbjct: 81  KVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENSSGGQEGWRGTNG 140

Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
            L       D P L H  + AG E G+    D  +G  +EGF   + T  NG R SAA A
Sbjct: 141 PLYIQRGKRDNP-LFHAFVEAGHEAGFEVTEDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 8/124 (6%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
           KV+GG++ +NG++Y RG + D+DE+E  GA GW Y+  LPYF K+E    +    +  RG
Sbjct: 83  KVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACLPYFRKAE---TWTGGADEYRG 139

Query: 113 GLLTVSHYN----DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLS 168
           G   V   N     L  L    + AG++ GYP   D  +G  +EGF    MT   G R S
Sbjct: 140 GSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQDY-NGYQQEGFGPMHMTVDKGVRAS 198

Query: 169 AAKA 172
            + A
Sbjct: 199 TSNA 202

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
332023410	824	Glucose dehydrogenase [Acromyrmex echina	0.722	0.157	0.518	1e-27
345481521	601	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.540	3e-27
307206097	1322	Glucose dehydrogenase [acceptor] [Harpeg	0.722	0.098	0.511	3e-26
322790290	562	hypothetical protein SINV_14909 [Solenop	0.722	0.231	0.525	4e-26
383860608	601	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.516	6e-26
91084191	623	PREDICTED: similar to AGAP002557-PA [Tri	0.777	0.224	0.476	2e-25
380013230	599	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.5	4e-25
328783045	601	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.5	4e-25
340728960	601	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.508	6e-25
350425529	601	PREDICTED: glucose dehydrogenase [accept	0.655	0.196	0.508	6e-25

>gi|332023410|gb|EGI63653.1| Glucose dehydrogenase [Acromyrmex echinatior]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/135 (51%), Positives = 89/135 (65%), Gaps = 5/135 (3%)

Query: 41  LKSEHNLQYNVR-KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 99
           L  EH   Y  R KV+GGT+V+NG+MY RG   DYD++ KLG  GW Y++VLP+F++SE 
Sbjct: 348 LNKEHKKCYWPRGKVLGGTSVMNGMMYMRGSRKDYDDWAKLGNVGWSYRDVLPFFIRSED 407

Query: 100 NLQYNSSQ--NHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRA 157
           N Q NS     H  GG LTV  +   P L  +LL AG+ELGY T VD+ +GR   GF  A
Sbjct: 408 NQQVNSMDYGYHGVGGPLTVMQFPYHPPLSTSLLEAGKELGYDT-VDL-NGRTHTGFAIA 465

Query: 158 QMTTRNGARLSAAKA 172
           Q T+RNG+RLS A+A
Sbjct: 466 QTTSRNGSRLSTARA 480

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481521|ref|XP_001607948.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 84/122 (68%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+ Y RG   DYD++ +LG  GW Y +VLPYF+KSE NLQ N      H 
Sbjct: 138 KVLGGTSVMNGMTYMRGSRKDYDDWARLGNPGWSYDDVLPYFIKSEDNLQVNDMDYGYHG 197

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L H LL AG+E+GYPT VD+ +GR   GF  AQ T+RNG+RLS A
Sbjct: 198 VGGPLTVTQFPYHPPLSHALLQAGKEMGYPT-VDL-NGRTHTGFAIAQTTSRNGSRLSTA 255

Query: 171 KA 172
           +A
Sbjct: 256 RA 257

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307206097|gb|EFN84177.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 5/135 (3%)

Query: 41  LKSEHNLQYNVR-KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 99
           L  EHN  Y  R KV+GGT+V+NG+ Y RG   DYD++ +LG  GW Y++VLPYF++SE 
Sbjct: 858 LNKEHNQCYWPRGKVLGGTSVMNGMTYMRGSRKDYDDWARLGNVGWSYRDVLPYFIRSED 917

Query: 100 NLQYNSSQ--NHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRA 157
           N Q N+     H  GG LTV+ +   P L   LL AG+ELGY T VD+ +GR   GF  A
Sbjct: 918 NQQVNNMDYGYHGVGGPLTVTQFPYHPPLSFALLEAGKELGYDT-VDL-NGRTHTGFAIA 975

Query: 158 QMTTRNGARLSAAKA 172
           Q T+RNG+RLS A+A
Sbjct: 976 QTTSRNGSRLSTARA 990

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|322790290|gb|EFZ15289.1| hypothetical protein SINV_14909 [Solenopsis invicta]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 87/135 (64%), Gaps = 5/135 (3%)

Query: 41  LKSEHNLQYNVR-KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 99
           L  EH   Y  R KV+GGT+V+NG+ Y RG   DYD++ KLG  GW Y++VLPYF++SE 
Sbjct: 86  LNKEHRKCYWPRGKVLGGTSVMNGMTYMRGSRKDYDDWAKLGNVGWSYRDVLPYFIRSED 145

Query: 100 NLQYNSSQ--NHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRA 157
           N Q NS     H  GG LTV  +   P L   LL AGRELGY T VD+ +GR   GF  A
Sbjct: 146 NQQVNSMDYGYHGVGGPLTVMQFPYHPPLSFALLDAGRELGYDT-VDL-NGRTHTGFAIA 203

Query: 158 QMTTRNGARLSAAKA 172
           Q T+RNG+RLS A+A
Sbjct: 204 QTTSRNGSRLSTARA 218

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860608|ref|XP_003705781.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+MY RG   DYD++ +LG  GW Y++VLPYF++SE NLQ N+     H 
Sbjct: 138 KVLGGTSVMNGMMYMRGSRKDYDDWARLGNIGWSYQDVLPYFIRSEDNLQANTMDYGYHG 197

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L + +L AG+ELGY + VD+ +GR   GF  AQ T+RNG+RLS A
Sbjct: 198 VGGPLTVTQFPYHPPLSYAILEAGKELGY-SPVDL-NGRTHTGFAIAQTTSRNGSRLSTA 255

Query: 171 KA 172
           +A
Sbjct: 256 RA 257

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|91084191|ref|XP_967340.1| PREDICTED: similar to AGAP002557-PA [Tribolium castaneum] gi|270008779|gb|EFA05227.1| hypothetical protein TcasGA2_TC015371 [Tribolium castaneum]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 87/147 (59%), Gaps = 7/147 (4%)

Query: 31  WGYKN---VLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGY 87
           WGY+          ++E    +   KV+GGT+V+NG+MY RG   DYD++ K G  GW Y
Sbjct: 111 WGYQTEPEPSACLAETEQRCYWPRGKVLGGTSVMNGMMYIRGSRKDYDDWAKAGNEGWSY 170

Query: 88  KNVLPYFLKSEHNLQYNSSQN--HARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDI 145
             VLPYFLKSE N Q +S     H+ GGLLTVS +   P L   LL A +ELGYP   D+
Sbjct: 171 NEVLPYFLKSEDNKQADSMDRGYHSTGGLLTVSQFPYHPPLSQALLKAAQELGYPIR-DL 229

Query: 146 GHGRLREGFYRAQMTTRNGARLSAAKA 172
            +G    GF  AQ T RNG+RLS AKA
Sbjct: 230 -NGAYHTGFNIAQTTNRNGSRLSTAKA 255

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013230|ref|XP_003690668.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Apis florea]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 84/122 (68%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+MY RG   DYD++ +LG  GW Y++VLPYF++SE NLQ N+     H 
Sbjct: 136 KVLGGTSVMNGMMYIRGSRKDYDDWARLGNIGWSYQDVLPYFIRSEDNLQANTMDYGYHG 195

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L +++L AG+ELGY   +   +GR   GF  AQ T+RNG+RLS A
Sbjct: 196 VGGPLTVTQFPYHPPLSYSILEAGKELGY--GIADLNGRTHTGFAIAQTTSRNGSRLSTA 253

Query: 171 KA 172
           +A
Sbjct: 254 RA 255

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|328783045|ref|XP_003250229.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Apis mellifera]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 84/122 (68%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+MY RG   DYD++ +LG  GW Y++VLPYF++SE NLQ N+     H 
Sbjct: 138 KVLGGTSVMNGMMYIRGSRKDYDDWARLGNIGWSYQDVLPYFIRSEDNLQANTMDYGYHG 197

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L +++L AG+ELGY   +   +GR   GF  AQ T+RNG+RLS A
Sbjct: 198 VGGPLTVTQFPYHPPLSYSILEAGKELGY--GIADLNGRTHTGFAIAQTTSRNGSRLSTA 255

Query: 171 KA 172
           +A
Sbjct: 256 RA 257

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340728960|ref|XP_003402779.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+MY RG   DYD++ +LG  GW Y++VLPYF++SE NLQ NS     H 
Sbjct: 138 KVLGGTSVMNGMMYMRGSRKDYDDWARLGNIGWSYQDVLPYFIRSEDNLQANSMDYGYHG 197

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L +++L AG ELGY   +   +GR   GF  AQ T+RNG+RLS A
Sbjct: 198 VGGPLTVTQFPYHPPLSYSILEAGNELGY--GIADLNGRTHTGFAIAQTTSRNGSRLSTA 255

Query: 171 KA 172
           +A
Sbjct: 256 RA 257

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350425529|ref|XP_003494150.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ--NHA 110
           KV+GGT+V+NG+MY RG   DYD++ +LG  GW Y++VLPYF++SE NLQ NS     H 
Sbjct: 138 KVLGGTSVMNGMMYMRGSRKDYDDWARLGNIGWSYQDVLPYFIRSEDNLQANSMDYGYHG 197

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
            GG LTV+ +   P L +++L AG ELGY   +   +GR   GF  AQ T+RNG+RLS A
Sbjct: 198 VGGPLTVTQFPYHPPLSYSILEAGNELGY--GIADLNGRTHTGFAIAQTTSRNGSRLSTA 255

Query: 171 KA 172
           +A
Sbjct: 256 RA 257

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.655	0.188	0.483	7e-24
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.822	0.210	0.406	8.3e-19
TIGR_CMR|SPO_2359	535	SPO_2359 "oxidoreductase, GMC	0.655	0.220	0.416	4.4e-18
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.655	0.188	0.434	1e-17
UNIPROTKB|Q488U4	534	CPS_0670 "Oxidoreductase, GMC	0.772	0.260	0.366	2e-17
TIGR_CMR|CPS_0670	534	CPS_0670 "oxidoreductase, GMC	0.772	0.260	0.366	2e-17
TIGR_CMR|SPO_A0386	541	SPO_A0386 "oxidoreductase, GMC	0.661	0.219	0.391	3.4e-17
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.644	0.159	0.416	3.6e-17
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.655	0.136	0.426	1.3e-16
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.677	0.198	0.375	3.2e-16

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 7.0e-24, P = 7.0e-24
 Identities = 59/122 (48%), Positives = 80/122 (65%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS--SQNHA 110
             KV+GGT+VLNG+MY RG+  DYD++   G  GW Y +VLP+F KSE NL  +   ++ HA
Sbjct:   145 KVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHA 204

Query:   111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
             +GGLL V  +   P L + +L AG ELG+    D+ +G+   GF  AQMT RNG R S+A
Sbjct:   205 KGGLLPVGKFPYNPPLSYAILKAGEELGFSVH-DL-NGQNSTGFMIAQMTARNGIRYSSA 262

Query:   171 KA 172
             +A
Sbjct:   263 RA 264

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 63/155 (40%), Positives = 81/155 (52%)

Query:    23 YEKLGATGWGYKNV--LPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK 79
             Y +L    W YK        L  ++N   +   +V+GG++VLN ++Y RG+  DYD +  
Sbjct:   104 YLQLSKLDWAYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWAS 163

Query:    80 LGATGWGYKNVLPYFLKSEHNLQYNSSQN--HARGGLLTVSHYNDLPDLGHTLLAAGREL 137
             LG  GW Y NVL YF KSE N     + N  H RGGLLTV        L    + AG +L
Sbjct:   164 LGNPGWDYDNVLRYFKKSEDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAFVEAGTQL 223

Query:   138 GYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
             GY    DI +G  + GF  AQ T R G+R S AKA
Sbjct:   224 GYDNR-DI-NGAKQAGFMIAQGTIRRGSRCSTAKA 256

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

TIGR_CMR|SPO_2359 SPO_2359 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 227 (85.0 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 50/120 (41%), Positives = 71/120 (59%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
             KV+GG++ LNGL+Y RG   DYD + ++G  GWG+ +VLP F +SE N +      H  G
Sbjct:    84 KVLGGSSSLNGLLYVRGQPEDYDRWRQMGNEGWGWDDVLPLFKRSE-NQERGPDAFHGTG 142

Query:   113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
             G L+VS+      +    +AA +  GYP + D  +G  +EG    Q+TTRNG R S+A A
Sbjct:   143 GELSVSNMRLQRPICDAWVAAAQNAGYPFNPDY-NGATQEGVGYFQLTTRNGRRCSSAVA 201

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 53/122 (43%), Positives = 71/122 (58%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNL-QY-NSSQNHA 110
             KV+GG++VLN ++Y RG   DYD +E +G   W Y++ L YF KSE N  QY  ++  HA
Sbjct:   140 KVLGGSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALYYFKKSEDNTNQYLANTPYHA 199

Query:   111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
              GG LTV        L  + + AG E+GY    D+ +G    GF  AQ TTR G+R S +
Sbjct:   200 TGGYLTVGEAPYHTPLAASFVEAGVEMGYENR-DL-NGEKMTGFMIAQGTTRRGSRCSTS 257

Query:   171 KA 172
             KA
Sbjct:   258 KA 259

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

UNIPROTKB|Q488U4 CPS_0670 "Oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 52/142 (36%), Positives = 74/142 (52%)

Query:    31 WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNV 90
             W ++ +    L      Q    K +GG +  N ++Y RG+  DYD +  LG  GW Y+ V
Sbjct:    59 WAFETIPQKGLNGRKGYQPR-GKTLGGCSSTNAMLYVRGNKWDYDNWSALGNKGWSYEEV 117

Query:    91 LPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRL 150
             LPYF KSE N +Y S Q H + G L VS+     +     +A+ +E G   + D  +G  
Sbjct:   118 LPYFKKSEGN-EYFSDQYHNQDGPLGVSNATAASNTNEMFIASCQEQGLKQNDDY-NGAE 175

Query:   151 REGFYRAQMTTRNGARLSAAKA 172
             +EG +  Q T +NG R SAAKA
Sbjct:   176 QEGCFMYQRTVKNGERCSAAKA 197

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0670 CPS_0670 "oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 52/142 (36%), Positives = 74/142 (52%)

Query:    31 WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNV 90
             W ++ +    L      Q    K +GG +  N ++Y RG+  DYD +  LG  GW Y+ V
Sbjct:    59 WAFETIPQKGLNGRKGYQPR-GKTLGGCSSTNAMLYVRGNKWDYDNWSALGNKGWSYEEV 117

Query:    91 LPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRL 150
             LPYF KSE N +Y S Q H + G L VS+     +     +A+ +E G   + D  +G  
Sbjct:   118 LPYFKKSEGN-EYFSDQYHNQDGPLGVSNATAASNTNEMFIASCQEQGLKQNDDY-NGAE 175

Query:   151 REGFYRAQMTTRNGARLSAAKA 172
             +EG +  Q T +NG R SAAKA
Sbjct:   176 QEGCFMYQRTVKNGERCSAAKA 197

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_A0386 SPO_A0386 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 219 (82.2 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 47/120 (39%), Positives = 71/120 (59%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
             KV+GG++ +N ++Y RG + D+DE++ LG  GWG+ +VLPYF ++E N +   +     G
Sbjct:    82 KVLGGSSSINAMVYIRGQAQDFDEWQGLGNPGWGWDDVLPYFRRAETNDRGGDAFRGDNG 141

Query:   113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
              L   S   DL  L    +AAG EL +P + D  +G  +EG    Q T + G R+SAA+A
Sbjct:   142 PLHVASMERDLHPLCQDFIAAGGELQFPHNPDF-NGATQEGVGTYQNTAKGGLRMSAARA 200

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 52/125 (41%), Positives = 73/125 (58%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQN---H 109
             KV+GG++VLN ++Y RG+  D+D++   G  GW Y+++LPYF KSE       ++N   H
Sbjct:   175 KVLGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSEDQRNPYLARNKRYH 234

Query:   110 ARGGLLTVSH--YNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARL 167
               GGL TV    YN  P +G   L AG E+GY   VD+ +G  + GF   Q   R G+R 
Sbjct:   235 GTGGLWTVQDAPYNT-P-IGPAFLQAGEEMGYDI-VDV-NGEQQTGFGFYQFNMRRGSRS 290

Query:   168 SAAKA 172
             S AK+
Sbjct:   291 STAKS 295

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 52/122 (42%), Positives = 66/122 (54%)

Query:    53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE--HNLQYNSSQNHA 110
             KV+GG++VLN ++Y RG  +DY+ +  LG  GW Y ++L YFLKSE   N     +  H 
Sbjct:   378 KVLGGSSVLNAMVYVRGSKNDYNHWASLGNPGWDYDSMLKYFLKSEDVRNPYLAKTPYHE 437

Query:   111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
              GG LTV        L    L AG E+GY    DI +G  + GF   Q T R GAR S  
Sbjct:   438 TGGYLTVQEAPWRTPLSIAFLQAGIEMGYENR-DI-NGAQQTGFMLTQSTIRRGARCSTG 495

Query:   171 KA 172
             KA
Sbjct:   496 KA 497

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 48/128 (37%), Positives = 72/128 (56%)

Query:    55 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH-NL-QYNSSQNHARG 112
             +GGT+++N ++Y RG   DYDE+     +GW Y  +LPYF KSE   + +   S  H R 
Sbjct:   130 VGGTSLINFMLYTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIGIPELYKSPYHGRN 189

Query:   113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
             G L V + +    L    L +GRE+GY  ++   +G    GF R+Q T RNG R S +KA
Sbjct:   190 GQLDVQYTDYRSQLLKAFLKSGREMGY--EITDPNGEHLMGFARSQATIRNGRRCSTSKA 247

Query:   173 TDFVECII 180
               F++ ++
Sbjct:   248 --FIQPVV 253

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	180
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	4e-21
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-20
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	2e-18
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	2e-11
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	3e-11
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	9e-10
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	4e-09
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	7e-08
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	3e-05

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 89.1 bits (222), Expect = 4e-21
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 8/124 (6%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
           KV+GG++ +NG++Y RG++ DYD + +L G  GW Y + LPYF K+E        ++  R
Sbjct: 86  KVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRD---GGEDDYR 142

Query: 112 G--GLLTVSHYNDLPD-LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLS 168
           G  G L+V+      + L    + AG + GYP   D+ +G  +EGF     T  NG R S
Sbjct: 143 GGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTNGRRWS 201

Query: 169 AAKA 172
           AA+A
Sbjct: 202 AARA 205

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEY-EKLGATGWGYKNVLPYFLKSEHNL---QYNSSQN 108
           KV+GG++ +NG++Y RG   D+D + ++ GA GW Y +VLPYF ++E  L     +    
Sbjct: 85  KVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTW 144

Query: 109 HARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLS 168
           H  GG L VS       +    + AG +LG+PT     +G  +EGF    +T  NG R S
Sbjct: 145 HGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPT-TPDPNGADQEGFGPYCVTICNGRRWS 203

Query: 169 AAKA 172
           AA+A
Sbjct: 204 AARA 207

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
           KV+GG++ +NG++Y RG+  DY+++ K  G   W Y + LPY+ + E        +   R
Sbjct: 80  KVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETT---FGGEKPYR 136

Query: 112 GGLLTVSHYNDLPD--LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSA 169
           G    +       D  L    + AG E GY    D+ +G  +EGF     T  NG R+SA
Sbjct: 137 GHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDV-NGFRQEGFGPMDSTVHNGRRVSA 195

Query: 170 AKA 172
           A+A
Sbjct: 196 ARA 198

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 26/127 (20%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDE-YEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
             +GG + +N     R  ++  DE   + G  GWGY + LPY  K E             
Sbjct: 25  STVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE------------- 71

Query: 112 GGLLTVSHYNDLPD-LGHTLLAAGRELGYPT-----DVDIGHGRLREGFYRAQMTTRNGA 165
            G L V+        L   LL A  ELGYP      + +  H     GF    +    GA
Sbjct: 72  -GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHY---CGFCG--LGCPTGA 125

Query: 166 RLSAAKA 172
           + S A+ 
Sbjct: 126 KQSTART 132

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 2   GGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNL 47
           GG++ +NG++Y RG++ DYD + +L G  GW Y + LPYF K+E   
Sbjct: 89  GGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRD 135

Length = 560

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 54  VMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGG 113
           V+GG+  +NG  +CR   +D+D +      GW + +VLP+F   E +L ++    H   G
Sbjct: 83  VLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDLDFDGPL-HGTAG 138

Query: 114 LLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIG--HGRLREGFYRAQMTTRNGARLSAAK 171
            + V    +L  +    +AA    G+    D+         G     +    G R+S A 
Sbjct: 139 PIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGPDAPTGVGAVPLNVDGGRRVSTAV 198

Query: 172 A 172
           A
Sbjct: 199 A 199

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 1   MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEH 45
           +GG++ +NG++Y RG+  DY+++ K  G   W Y + LPY+ + E 
Sbjct: 82  LGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLET 127

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 2  GGTTVLNGLMYCRGDSSDYDE-YEKLGATGWGYKNVLPYFLKSE 44
          GG + +N     R  ++  DE   + G  GWGY + LPY  K E
Sbjct: 28 GGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE 71

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 1   MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 49
           +GG+  +NG  +CR   +D+D +      GW + +VLP+F   E +L +
Sbjct: 84  LGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDLDF 129

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG1238|consensus	623		99.97
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.93
PRK02106	560	choline dehydrogenase; Validated	99.92
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.92
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.87
PLN02785	587	Protein HOTHEAD	99.6
KOG1238|consensus	623		98.99
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.71
PRK02106	560	choline dehydrogenase; Validated	98.54
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.48
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.19
PLN02785	587	Protein HOTHEAD	97.54

>KOG1238|consensus

Probab=99.97  E-value=4.7e-32  Score=238.17  Aligned_cols=154  Identities=32%  Similarity=0.471  Sum_probs=140.5

Q ss_pred             HhcCCCCCccccccc--hhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcC
Q psy9925          24 EKLGATGWGYKNVLP--YFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN  100 (180)
Q Consensus        24 ~~~~~~~W~~~t~~~--~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~  100 (180)
                      .+.+..+|+|.++|+  +|..+.++ +.|||||+|||||.||+|+|+||...|||+|++.|++||+|++|+|||+|+|+.
T Consensus       106 ~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~  185 (623)
T KOG1238|consen  106 LQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDK  185 (623)
T ss_pred             hccccccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhc
Confidence            446789999999999  66678877 999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC--CCCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcccc
Q psy9925         101 LQYN--SSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVEC  178 (180)
Q Consensus       101 ~~~~--~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~~  178 (180)
                      ..+.  .+++|+..||+.|+...+..++..+|.++..++|.+.  .|+|+..+.|+...+.++++|.|.|++.+||.|.-
T Consensus       186 ~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~--~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~  263 (623)
T KOG1238|consen  186 VVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSI--FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIR  263 (623)
T ss_pred             cCCCcccCcccccCCcceeccccccCchhhHhHHhHHhcCCCc--cCCCCccccchhhhhccccCCEEEEehhhhhhhhh
Confidence            6553  4568999999999999999999999999999999655  45999999999999999999999999999998864


Q ss_pred             c
Q psy9925         179 I  179 (180)
Q Consensus       179 ~  179 (180)
                      +
T Consensus       264 ~  264 (623)
T KOG1238|consen  264 L  264 (623)
T ss_pred             c
Confidence            3

>TIGR01810 betA choline dehydrogenase

Probab=99.93  E-value=3.3e-26  Score=202.55  Aligned_cols=147  Identities=28%  Similarity=0.458  Sum_probs=131.2

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      ..++|.|+++||.  .++++ +.+++||+|||||.||+|+|.|+.+.|||.|++. |+++|+|++|+|||+|+|++..+ 
T Consensus        55 ~~~~~~~~~~p~~--~~~~~~~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~-  131 (532)
T TIGR01810        55 KRYNWIYETEPEP--HMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG-  131 (532)
T ss_pred             CCcceeeEcccCC--CCCCceEeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC-
Confidence            3468999999997  56677 8899999999999999999999999999999984 99999999999999999998754 


Q ss_pred             CCCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925         105 SSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE  177 (180)
Q Consensus       105 ~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~  177 (180)
                      ..+.||.+||+.|..+....+..+.|.++++++|++. ..|+|++...|++.++.++.+|.|++++.+||.|.
T Consensus       132 ~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a  203 (532)
T TIGR01810       132 EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNK-TPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPA  203 (532)
T ss_pred             CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCc-cCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhh
Confidence            2467999999999988777888999999999999998 66799887888888888888999999999999874

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=99.92  E-value=2.8e-25  Score=197.77  Aligned_cols=147  Identities=32%  Similarity=0.533  Sum_probs=130.5

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      ..++|.|.+.||.  .++++ +.+++||+|||||.||+|+|.|+.+.|||.|++. |+++|+|++|+|||+|+|++..+ 
T Consensus        61 ~~~~~~~~~~p~~--~~~~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~-  137 (560)
T PRK02106         61 KRYNWAYETEPEP--HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG-  137 (560)
T ss_pred             CceeeceecccCC--CCCCCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC-
Confidence            4578999999997  45666 8899999999999999999999999999999998 99999999999999999998744 


Q ss_pred             CCCCCCCCCceeeecC-CCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925         105 SSQNHARGGLLTVSHY-NDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE  177 (180)
Q Consensus       105 ~~~~hg~~Gpl~v~~~-~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~  177 (180)
                      ..+.||..||++++.+ ....++...|.++++++|++. ..|+|++...|++.++.++.+|.|++++.+||.|.
T Consensus       138 ~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~-~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a  210 (560)
T PRK02106        138 EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPR-TDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPA  210 (560)
T ss_pred             CccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCc-CCCCCCCCCceeEEEeeecCCCEEEChHHHhhccc
Confidence            3457999999999876 566788999999999999998 66688887889888888888999999999999875

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.92  E-value=2.4e-25  Score=197.45  Aligned_cols=146  Identities=34%  Similarity=0.589  Sum_probs=133.5

Q ss_pred             CCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC-
Q psy9925          28 ATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN-  104 (180)
Q Consensus        28 ~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~-  104 (180)
                      .++|.|.++++.  .++++ +.+++||+|||||.||+|+|.|+.+.||+.|++. |+++|+|++|+|||+|+|++.... 
T Consensus        61 ~~~w~~~~~~~~--~~~~r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g  138 (542)
T COG2303          61 RYDWGFRTEPEP--HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGG  138 (542)
T ss_pred             ccCCccccCccc--CCCCccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCC
Confidence            689999999998  67778 9999999999999999999999999999999988 899999999999999999976542 


Q ss_pred             C--CCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcc
Q psy9925         105 S--SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFV  176 (180)
Q Consensus       105 ~--~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~  176 (180)
                      .  ...||..||+.+..+....++..+|.++..++|++. .+|+|+..+.|++.++.++.+|.|.+++.+||.|
T Consensus       139 ~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~-~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~  211 (542)
T COG2303         139 QDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPT-TPDPNGADQEGFGPYCVTICNGRRWSAARAYLKP  211 (542)
T ss_pred             CCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCc-CcccccCCCCCcccceeeccCCeEeechhhcchh
Confidence            1  347999999999888666899999999999999999 7779999999999999999999999999999987

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.87  E-value=2.8e-23  Score=170.52  Aligned_cols=148  Identities=30%  Similarity=0.434  Sum_probs=123.2

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      ..++|.|.+.++.  .++++ +.+++|++|||||.||+|++.|+.+.||++|... |.++|+|+++.|||+|+|++..+.
T Consensus        53 ~~~~~~~~~~~~~--~~~~~~~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~  130 (296)
T PF00732_consen   53 SEYDWGYYSGPQP--FLNGRTINWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS  130 (296)
T ss_dssp             TTTBBGEEECEEE--CTTTTSEEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB
T ss_pred             ccccccccccccc--ccccceeeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc
Confidence            4578988888886  56667 7889999999999999999999999999999998 899999999999999999998773


Q ss_pred             CCCCCCCCCceee-ecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcccc
Q psy9925         105 SSQNHARGGLLTV-SHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVEC  178 (180)
Q Consensus       105 ~~~~hg~~Gpl~v-~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~~  178 (180)
                       ...|+.+++++| ..+....+....+.++++++|++. ..|++.....|+.....++.+|.|+|++.+||.+.+
T Consensus       131 -~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~  203 (296)
T PF00732_consen  131 -SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPV-PQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPAL  203 (296)
T ss_dssp             -GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHB-CSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHT
T ss_pred             -ccccccccccccccccCCCCHHHHHHHHHHHHcCCcc-ccccccccccccccccccccchhceehhhcccchhh
Confidence             678999999999 555666788899999999999996 555888888888877777789999999999997653

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02785 Protein HOTHEAD

Probab=99.60  E-value=1.3e-15  Score=136.52  Aligned_cols=117  Identities=20%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS  105 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~  105 (180)
                      ...+|+|.+.+|.  ...++ +.++|||+|||||+||+|+|.|+.+.+|++      .||+|+.++|||+++|+....  
T Consensus       104 ~~~d~~~~~~~q~--~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~--  173 (587)
T PLN02785        104 GLADTSPTSASQA--FISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH--  173 (587)
T ss_pred             cccccCCcccccc--ccCCCceeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--
Confidence            3468999999997  44556 889999999999999999999999999963      689999999999999975311  


Q ss_pred             CCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccc--cccccc--cCCeechhhH
Q psy9925         106 SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFY--RAQMTT--RNGARLSAAK  171 (180)
Q Consensus       106 ~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~--~~~~~~--~~g~R~sa~~  171 (180)
                                   . ....++..+|++|++++|++.    +|+....+..  ....++  ..|+|+++++
T Consensus       174 -------------~-~~~~~~~~~~~~a~~e~G~~~----~n~~~~d~~~G~~~g~~i~~~~g~R~saa~  225 (587)
T PLN02785        174 -------------W-PKVAPWQAALRDSLLEVGVSP----FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE  225 (587)
T ss_pred             -------------C-CCcChHHHHHHHHHHHcCCCc----cCCCCCCCccceeeeEEEeCCCCEEcCHHH
Confidence                         1 123678899999999999975    3322211111  122345  4799999987

>KOG1238|consensus

Probab=98.99  E-value=2.5e-10  Score=101.52  Aligned_cols=66  Identities=39%  Similarity=0.818  Sum_probs=53.8

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhcccc-ccccc---ccccCCcccccceec
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN-LQYNV---RKVMGGTTVLNGLMY   66 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~~-~~~~~---g~~lGGss~in~~~~   66 (180)
                      |||||+||+|+|+||++.|||+|++.++.+|+|+.+.++|++.|+. .+.+.   -...+|-..++...+
T Consensus       140 LGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~  209 (623)
T KOG1238|consen  140 LGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVY  209 (623)
T ss_pred             ecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccc
Confidence            7999999999999999999999999999999999999999888875 33222   244566666666444

>TIGR01810 betA choline dehydrogenase

Probab=98.71  E-value=1.4e-08  Score=90.30  Aligned_cols=84  Identities=24%  Similarity=0.563  Sum_probs=59.6

Q ss_pred             CCcccccccceeccCChhhhHHHHh-cCCCCCccccccchhhhcccccccccccccCCcccccceeccCCCchhHHHHHH
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK   79 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~-~~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~   79 (180)
                      |||||++|.|+|+|+++.|||.|++ .+..+|+|+.+.++|++++..+.. ....+|.+++++.. ........++.|.+
T Consensus        82 lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~-~~~~~g~~G~~~v~-~~~~~~~~~~~~~~  159 (532)
T TIGR01810        82 LGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG-EKPYRGHDGPIKVR-RGPADNPLFQAFIE  159 (532)
T ss_pred             cCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC-CcccCCCCCCEEEe-cCCCCCHHHHHHHH
Confidence            7999999999999999999999988 677899999999999888865221 11346667777653 22222334555554


Q ss_pred             h-ccCCCC
Q psy9925          80 L-GATGWG   86 (180)
Q Consensus        80 ~-g~~gW~   86 (180)
                      . ...||.
T Consensus       160 a~~~~G~~  167 (532)
T TIGR01810       160 AGVEAGYN  167 (532)
T ss_pred             HHHHcCCC
Confidence            4 344553

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=98.54  E-value=8.1e-08  Score=85.96  Aligned_cols=62  Identities=39%  Similarity=0.828  Sum_probs=48.9

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccccccccCCcccccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNG   63 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~   63 (180)
                      |||||++|.|+|+|+++.|||.|... ++.+|+|+.+.++|++++.... .....+|-.++++.
T Consensus        88 lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~-~~~~~~g~~gp~~~  150 (560)
T PRK02106         88 LGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG-GEDDYRGGDGPLSV  150 (560)
T ss_pred             cCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC-CCccccCCCCCEEE
Confidence            79999999999999999999999986 7789999999999988876531 11123455556654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.48  E-value=1.5e-07  Score=84.02  Aligned_cols=84  Identities=32%  Similarity=0.624  Sum_probs=59.4

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccc-c--ccccCCcccccceeccCCCchhHHH
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN-V--RKVMGGTTVLNGLMYCRGDSSDYDE   76 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~-~--g~~lGGss~in~~~~~r~~~~~~d~   76 (180)
                      |||||++|.|+|+|+++.|||.|.+. +..+|.|+.+.++|+++|...... .  .-.+|+.+++...-. +......++
T Consensus        87 lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~-~~~~~~~~a  165 (542)
T COG2303          87 LGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP-RSPNPIARA  165 (542)
T ss_pred             ccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC-CCchHHHHH
Confidence            79999999999999999999999885 669999999999998887642110 0  124666677665333 333444556


Q ss_pred             HHHh-ccCCC
Q psy9925          77 YEKL-GATGW   85 (180)
Q Consensus        77 W~~~-g~~gW   85 (180)
                      +.++ ...|+
T Consensus       166 ~~~a~~~~G~  175 (542)
T COG2303         166 FIEAGEQLGF  175 (542)
T ss_pred             HHHHHHHcCC
Confidence            6555 33444

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.19  E-value=6.1e-07  Score=73.55  Aligned_cols=62  Identities=34%  Similarity=0.655  Sum_probs=42.4

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccccccccCCcccccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNG   63 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~   63 (180)
                      |||||++|.|+++|+++.|||.|... +...|+|+.+.+++++++..... ....+|-...+..
T Consensus        80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~-~~~~~g~~~~~~v  142 (296)
T PF00732_consen   80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP-SSDLHGVDGPLPV  142 (296)
T ss_dssp             TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT-BGGGSCBSSSEEE
T ss_pred             cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc-ccccccccccccc
Confidence            79999999999999999999999986 56679999999988777754111 1344444444444

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02785 Protein HOTHEAD

Probab=97.54  E-value=3e-05  Score=70.03  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=33.0

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH   45 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~   45 (180)
                      |||||++|+|+|+||+++|||.      .+|+|+.+.++|+..++
T Consensus       131 LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~  169 (587)
T PLN02785        131 LGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVER  169 (587)
T ss_pred             ecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhc
Confidence            7999999999999999999964      57999888887755543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		4e-05
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		3e-04

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 31  WGYKNVLPYFLKSEHNLQYNVR-KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKN 89
           W YK  +      E   + N R K +GG++ LN   +  G  + +D++E+ G   W +  
Sbjct: 65  WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 90  VLPYFLKS-----EHNLQYNSSQNHARGGLLTVSH---YNDLPDLGHTLLAAGRELGYPT 141
           ++PY  KS     +  L     +    GG + +SH    +++      L  A + +G P 
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPL 184
Query: 142 DVDIGHGRLR------EGFYRAQMTTRNGARL 167
             +I  G +       +  YR Q   R+G+ L
Sbjct: 185 IENIYDGEMDGLTHCCDTIYRGQ---RSGSFL 213

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEY-EKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
           +++GG++ L+ + Y RG  SD+  + +  G   WG+  +LP F   E +       +   
Sbjct: 95  RLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKG 154
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAK 171
           G L      +++  L    + AG  LG P       G +  G     +  R+G R++AA 
Sbjct: 155 GPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEM-IGVTPNSLNIRDGRRVTAAD 213
Query: 172 A 172
           A
Sbjct: 214 A 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-34
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	2e-34
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	3e-34
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-33
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	2e-31
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	3e-31
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	2e-25
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	4e-15
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-23

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  126 bits (319), Expect = 1e-34
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN-----LQYNSSQ 107
           K +GG++ LN   +  G  + +D++E+ G   W +  ++PY  KS        L     +
Sbjct: 88  KTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELE 147

Query: 108 NHARGGLLTVSHYNDLPD---LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNG 164
               GG + +SH   + +       L  A + +G P   +I +    +G      T   G
Sbjct: 148 KIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENI-YDGEMDGLTHCCDTIYRG 206

Query: 165 ARLSAA 170
            R  + 
Sbjct: 207 QRSGSF 212

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  126 bits (318), Expect = 2e-34
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQN--- 108
           +++GG++ ++ ++  RG + D+D Y  + G  GW + N+  +  K+E  +    + N   
Sbjct: 82  RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSG 141

Query: 109 ------HARGGLLTVSHYNDLPDLGHTLLAAGRELG--YPTDVDIGHGRLREGFYRAQMT 160
                 H   G +++S       L   +LA  +E    +  + D+G      G   +  +
Sbjct: 142 EFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMG-TGHPLGISWSIAS 200

Query: 161 TRNGARLSAAKA 172
             NG R S++ A
Sbjct: 201 VGNGQRSSSSTA 212

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  125 bits (316), Expect = 3e-34
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 16/135 (11%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQN--- 108
           K +GG+T++NG  + R D    D +EK+ G  GW + N+  Y  K+E      ++Q    
Sbjct: 102 KGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAG 161

Query: 109 -------HARGGLLTVSHYNDLP---DLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQ 158
                  H   G +     ++      +   L+     LG P   D   G    G     
Sbjct: 162 HSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIM 220

Query: 159 MTT-RNGARLSAAKA 172
                N  R+ AA+A
Sbjct: 221 NNLDENQVRVDAARA 235

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  123 bits (311), Expect = 2e-33
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 16/135 (11%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQN--- 108
             +GG+T++NG  + R   +  D +E + G  GW + NV  Y L++E     N+ Q    
Sbjct: 98  NGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAG 157

Query: 109 -------HARGGLLTVSHYNDLPD---LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQ 158
                  H   G +     +   D   +   L++A  + G PT  D        G     
Sbjct: 158 HYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDF-GCGDPHGVSMFP 216

Query: 159 MTT-RNGARLSAAKA 172
            T   +  R  AA+ 
Sbjct: 217 NTLHEDQVRSDAARE 231

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  117 bits (296), Expect = 2e-31
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQ-YNSSQNHA 110
           KVMGG +  N  +       D DE+E   GATGW  +   P + + E N      + +H 
Sbjct: 91  KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHG 150

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTR-NGARLSA 169
             G + + +       G  LL A  + G P         +  G    Q+  R +G R S+
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210

Query: 170 AKA 172
           + +
Sbjct: 211 SVS 213

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  116 bits (294), Expect = 3e-31
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDE-YEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
           +++GG++ L+ + Y RG  SD+    +  G   WG+  +LP F   E +        H +
Sbjct: 95  RLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH-PLGGDGIHGK 153

Query: 112 GGLLTVSHYNDLPD-LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
           GG L +    D    L    + AG  LG P      +     G     +  R+G R++AA
Sbjct: 154 GGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGH-NSGEMIGVTPNSLNIRDGRRVTAA 212

Query: 171 KA 172
            A
Sbjct: 213 DA 214

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  100 bits (252), Expect = 2e-25
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 24/126 (19%)

Query: 49  YNVR-KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ 107
            NVR +V+GGT+++N  +Y R ++S Y          W    V   +   E  + Y  + 
Sbjct: 96  DNVRGRVLGGTSIINAGVYARANTSIYSA----SGVDWDMDLVNQTYEWVEDTIVYKPNS 151

Query: 108 NHARGGLLTVSHYNDLPDLGHTLLAAGRELGYP-TDVDIGHGRLREGFYRAQMTTRNGAR 166
              +                   L AG    +  +          EG      T  N   
Sbjct: 152 QSWQS------------VTKTAFLEAGVHPNHGFSLDHE------EGTRITGSTFDNKGT 193

Query: 167 LSAAKA 172
             AA  
Sbjct: 194 RHAADE 199

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 2   GGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNVR 52
           GGT+++N  +Y R ++S Y          W    V   +   E  + Y   
Sbjct: 104 GGTSIINAGVYARANTSIYSA----SGVDWDMDLVNQTYEWVEDTIVYKPN 150

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score = 95.7 bits (239), Expect = 1e-23
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 53  KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW--GYKNVLPYFLKSEHNLQYNSSQNHA 110
            ++GG T +NG +Y   +  D+       + GW   + N  PY  K    L   S+ + +
Sbjct: 91  CLVGGGTSVNGALYWYPNDGDFS-----SSVGWPSSWTNHAPYTSKLSSRLP--STDHPS 143

Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
             G   +    ++       L  G+     T  D         F  +     NG R    
Sbjct: 144 TDGQRYLEQSFNVVS----QLLKGQGYNQATINDN-PNYKDHVFGYSAFDFLNGKRAGPV 198

Query: 171 KA 172
             
Sbjct: 199 AT 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.97
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.97
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.95
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.94
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.93
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.91
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.72
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.7
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.38
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.35
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.97
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.91
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.79
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.75
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.51
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.46
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.75
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.71
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.82
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.67

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.97  E-value=2.2e-32  Score=242.27  Aligned_cols=148  Identities=20%  Similarity=0.306  Sum_probs=137.7

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      +.++|+|.++||.  .++++ +.++|||+|||||+||+|+|.|+.+.|||.|+++ |++||+|++|+|||+|+|++..+.
T Consensus        57 ~~~~w~~~t~pq~--~~~~r~~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~  134 (566)
T 3fim_B           57 SIFDWNYTTTAQA--GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPA  134 (566)
T ss_dssp             STTBCCCBCCCCG--GGTTCCCBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCT
T ss_pred             CccccccccccCC--CCCCceEeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCcc
Confidence            5689999999998  78888 9999999999999999999999999999999999 999999999999999999998652


Q ss_pred             ---------CCCCCCCCCceeeecCCCCChHHHHHHHHHHHc--CCCCCCCCCCCCCCcccccccccccCCeechhhHhh
Q psy9925         105 ---------SSQNHARGGLLTVSHYNDLPDLGHTLLAAGREL--GYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKAT  173 (180)
Q Consensus       105 ---------~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~--G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ay  173 (180)
                               ++.+||.+|||+|+++.+..++...|++|++++  |++. .+|+|++...|+++++.++++|+|++++.+|
T Consensus       135 ~~~~~~~~~~~~~hG~~Gp~~v~~~~~~~~~~~~~~~a~~~~~~G~~~-~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ay  213 (566)
T 3fim_B          135 DNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFF-NPDMGTGHPLGISWSIASVGNGQRSSSSTAY  213 (566)
T ss_dssp             TCCCCTTTSCGGGSCBSSSEEEBSCSSCCTHHHHHHHHHHHTHHHHCB-CSCGGGSCCCEEEECCBSEETTEECCHHHHT
T ss_pred             ccccccccCCccccCCCCCeeeecCCCCCHHHHHHHHHHHHHhcCCCc-cCCCCCCCcceEEeeeeecCCCEEcCHHHHH
Confidence                     236899999999999998899999999999999  9999 6779999999999999999999999999999


Q ss_pred             hccc
Q psy9925         174 DFVE  177 (180)
Q Consensus       174 l~~~  177 (180)
                      |.|.
T Consensus       214 L~p~  217 (566)
T 3fim_B          214 LRPA  217 (566)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9764

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.97  E-value=1.7e-31  Score=237.15  Aligned_cols=147  Identities=21%  Similarity=0.283  Sum_probs=132.7

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccC-CCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGAT-GWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~-gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      +.++|+|.++||.   ++++ +.+||||+|||||+||+|+|.|+.+.|||.|+++|++ ||+|++|+|||+|+|++..|.
T Consensus        74 ~~~~w~~~t~~q~---~~~r~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~  150 (583)
T 3qvp_A           74 SSVDHAYETVELA---TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPN  150 (583)
T ss_dssp             STTBCCEECCCCT---TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCC
T ss_pred             CcccCCccccccC---CCCCeeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCc
Confidence            5689999999995   5677 8999999999999999999999999999999999777 999999999999999998653


Q ss_pred             ----------CCCCCCCCCceeeecC---CCCChHHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccc-CCeechhh
Q psy9925         105 ----------SSQNHARGGLLTVSHY---NDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTR-NGARLSAA  170 (180)
Q Consensus       105 ----------~~~~hg~~Gpl~v~~~---~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~-~g~R~sa~  170 (180)
                                +..+||.+|||+|+++   ....++..+|++|++++|++. .+|+|++.+.|++..+.+++ +|+|+|++
T Consensus       151 ~~~~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~-~~D~n~~~~~G~~~~~~t~~~~g~R~saa  229 (583)
T 3qvp_A          151 AKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPT-KKDFGCGDPHGVSMFPNTLHEDQVRSDAA  229 (583)
T ss_dssp             HHHHHHTCCCCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCB-CCCTTSSCCCEEECCCBSBCTTCBBCCHH
T ss_pred             chhhcccccCCccccCCCCCEEecCCCCcccCCHHHHHHHHHHHHcCCCc-CCCCCCCCCceecccceeEcCCCcEecHH
Confidence                      3468999999999987   345789999999999999999 67799999999999999997 89999999


Q ss_pred             Hhhhccc
Q psy9925         171 KATDFVE  177 (180)
Q Consensus       171 ~ayl~~~  177 (180)
                      .+||.|.
T Consensus       230 ~ayL~p~  236 (583)
T 3qvp_A          230 REWLLPN  236 (583)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHHh
Confidence            9999874

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.95  E-value=5.9e-28  Score=214.63  Aligned_cols=146  Identities=22%  Similarity=0.301  Sum_probs=130.6

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      +.++|.|.++|    .++++ +.+++||+|||||.||+|+|.|+.+.|||.|+++ |+++|+|++|+|||+|+|++..+.
T Consensus        79 ~~~~w~~~t~p----~~~~~~~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~  154 (587)
T 1gpe_A           79 TTVDQNYLTVP----LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPT  154 (587)
T ss_dssp             STTBCCEECCC----CTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCC
T ss_pred             Ccccccccccc----CCCCceeeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCc
Confidence            45799999988    35677 8999999999999999999999999999999999 999999999999999999998652


Q ss_pred             ----------CCCCCCCCCceeeecC---CCCChHHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccc-CCeechhh
Q psy9925         105 ----------SSQNHARGGLLTVSHY---NDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTR-NGARLSAA  170 (180)
Q Consensus       105 ----------~~~~hg~~Gpl~v~~~---~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~-~g~R~sa~  170 (180)
                                ++.+||.+|||+|+++   ....++.+.|++|++++|++. ..|+|++.+.|++.++.+++ +|+|+|++
T Consensus       155 ~~~~~~G~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~-~~d~n~~~~~G~~~~~~~~~~~g~R~sa~  233 (587)
T 1gpe_A          155 AAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPV-QQDFLCGHPRGVSMIMNNLDENQVRVDAA  233 (587)
T ss_dssp             HHHHHHTCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCB-SCCTTSSCCCEEECCEESBCTTCCBCCHH
T ss_pred             ccccccccccCccccCCCCCEEEccCCCcCCCCHHHHHHHHHHHHcCCCc-CCCCCCCCCCEEEecceEECCCCcccCHH
Confidence                      3467999999999976   356789999999999999998 66799999999999999886 79999999


Q ss_pred             Hhhhccc
Q psy9925         171 KATDFVE  177 (180)
Q Consensus       171 ~ayl~~~  177 (180)
                      .+||.|.
T Consensus       234 ~~~l~~~  240 (587)
T 1gpe_A          234 RAWLLPN  240 (587)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHHh
Confidence            9999764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.94  E-value=1.8e-27  Score=211.14  Aligned_cols=141  Identities=21%  Similarity=0.360  Sum_probs=122.9

Q ss_pred             cCCCCCccccccchhhhcccc-cc------cccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhh
Q psy9925          26 LGATGWGYKNVLPYFLKSEHN-LQ------YNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE   98 (180)
Q Consensus        26 ~~~~~W~~~t~~~~~~~~~~~-~~------~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E   98 (180)
                      .+.++|+|.++.      +++ +.      +||||+|||||+||+|+|.|+.+.|||.|+++|+++|+|++|+|||+|+|
T Consensus        60 ~~~~dW~y~t~~------~~r~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e  133 (577)
T 3q9t_A           60 NSKYDWAYKTTM------VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSA  133 (577)
T ss_dssp             TSTTBCCEEEEE------EEETTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTE
T ss_pred             CCCcccceEEEE------CCccccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence            456899999882      344 44      99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC-----CCCCCCCCCceeeecCCCCC---hHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhh
Q psy9925          99 HNLQYN-----SSQNHARGGLLTVSHYNDLP---DLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA  170 (180)
Q Consensus        99 ~~~~~~-----~~~~hg~~Gpl~v~~~~~~~---~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~  170 (180)
                      ++..+.     +...||.+|||+|+++....   ++..+|+++++++|++. .+|+|++...|++..+.++++|+|++++
T Consensus       134 ~~~~~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~-~~d~n~~~~~G~~~~~~~~~~g~R~s~~  212 (577)
T 3q9t_A          134 TYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPL-IENIYDGEMDGLTHCCDTIYRGQRSGSF  212 (577)
T ss_dssp             EEECTTCCSCGGGGGGCCSCSEEEEECCCCGGGHHHHHHHHHHHHHTTCCB-CSCCSSSCCCEEEECEESEETTEECCGG
T ss_pred             ccCCCccccCCccccCCCCCCEEeeCCCCCcccchHHHHHHHHHHHcCCCc-CCCCCCCCcCeEEeecceecCCeEeeHH
Confidence            998653     12368999999999876643   58889999999999999 6779999999999999999999999876


Q ss_pred             Hhhh
Q psy9925         171 KATD  174 (180)
Q Consensus       171 ~ayl  174 (180)
                       +|+
T Consensus       213 -~~l  215 (577)
T 3q9t_A          213 -LFV  215 (577)
T ss_dssp             -GGS
T ss_pred             -HHH
Confidence             465

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.93  E-value=1e-25  Score=198.60  Aligned_cols=146  Identities=23%  Similarity=0.320  Sum_probs=131.7

Q ss_pred             CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHH-hccCCCCccchhHHHHhhhcCCCCC
Q psy9925          27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQYN  104 (180)
Q Consensus        27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~-~g~~gW~~~~v~pyf~k~E~~~~~~  104 (180)
                      +..+|.|.++||.  . +++ +.+++||+|||+|.||+|.|.|+.+.||+.|++ +|+++|+|++|+|||+|+|++..+.
T Consensus        67 ~~~~w~~~~~p~~--~-~~~~~~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~  143 (546)
T 2jbv_A           67 SGYDWDYPIEPQE--N-GNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG  143 (546)
T ss_dssp             STTBCCEEBCCCS--S-SCTTCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCB
T ss_pred             CcccccccccccC--C-CCceEEeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCC
Confidence            4579999999997  4 666 889999999999999999999999999999999 6999999999999999999987632


Q ss_pred             C-CCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCC--Cccccccccccc-CCeechhhHhhhccc
Q psy9925         105 S-SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRL--REGFYRAQMTTR-NGARLSAAKATDFVE  177 (180)
Q Consensus       105 ~-~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~--~~G~~~~~~~~~-~g~R~sa~~ayl~~~  177 (180)
                      + ...||.+|||+|+.+....++.+.|.++++++|++. . |+|++.  +.|++.++.++. +|.|+++..+||.+.
T Consensus       144 ~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~-~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a  218 (546)
T 2jbv_A          144 PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR-A-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPI  218 (546)
T ss_dssp             TTBTTSCBSCSEEEEECCSCCHHHHHHHHHHHHTTCCB-C-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGG
T ss_pred             CccccCCCCCCEEEecCCCCCHHHHHHHHHHHHCCCCc-c-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHH
Confidence            2 468999999999988788899999999999999999 5 699888  899999999998 999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.91  E-value=8.9e-25  Score=190.42  Aligned_cols=148  Identities=23%  Similarity=0.440  Sum_probs=132.4

Q ss_pred             cCCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCC
Q psy9925          26 LGATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY  103 (180)
Q Consensus        26 ~~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~  103 (180)
                      .+.++|+|.++||.  .++++ +.++|||+|||||.||+|+|.|+.+.|||.|++. ++.+|+|++++|||+|+|++...
T Consensus        69 ~~~~dw~~~t~p~~--~~~~~~~~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~  146 (526)
T 3t37_A           69 GRSYDWDYRTEAQA--GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG  146 (526)
T ss_dssp             TSTTBCCEECCCBG--GGTTBCCEECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT
T ss_pred             CCccccCccccccC--CCCCCeEeccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC
Confidence            45689999999998  67888 8999999999999999999999999999999887 99999999999999999998765


Q ss_pred             CCCCCCCCCCceeeecCC-CCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925         104 NSSQNHARGGLLTVSHYN-DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE  177 (180)
Q Consensus       104 ~~~~~hg~~Gpl~v~~~~-~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~  177 (180)
                       ....|+..|++.+.... ...|+.++|+++++++|++. ..|++.+.+.|+..++.++..|.|.+++.+|+.+.
T Consensus       147 -~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~  219 (526)
T 3t37_A          147 -GDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPR-LEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKA  219 (526)
T ss_dssp             -TSSSSCSSCSEECBCCSTTSCHHHHHHHHHHHHTTCCB-CSSSCSSCCBSBCCCCBCEETTEECCHHHHHSCHH
T ss_pred             -CccccCcCCCcCcccccccCCHHHHHHHHHHHHcCCCc-ccCCCCCcccccccccccccCCccccccccccccc
Confidence             45678999999987654 45789999999999999998 66699998899999888999999999999998653

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.72  E-value=2.4e-19  Score=156.62  Aligned_cols=135  Identities=14%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             CCCCccccccch-------------hhhc------ccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCc
Q psy9925          28 ATGWGYKNVLPY-------------FLKS------EHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGY   87 (180)
Q Consensus        28 ~~~W~~~t~~~~-------------~~~~------~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~   87 (180)
                      ..+|.|.++||.             ...+      +++ +.+++||+|||||.||+|+|.|+.+.|||.|+    ++|.|
T Consensus        65 ~~~w~~~~~pq~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~  140 (507)
T 1coy_A           65 RSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDS  140 (507)
T ss_dssp             TSBBSCSBCCCSSCSBTTBSCCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCH
T ss_pred             cccccccccccccccccccccccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----Cccch
Confidence            478999999871             0123      556 88999999999999999999999999999996    58999


Q ss_pred             cchh-HHHHhhhcCCCCCCCCCCCCCCceeeecCCC-CChHHHHHHHHHHHcCC-----CCCCCCCCCCCCccccccccc
Q psy9925          88 KNVL-PYFLKSEHNLQYNSSQNHARGGLLTVSHYND-LPDLGHTLLAAGRELGY-----PTDVDIGHGRLREGFYRAQMT  160 (180)
Q Consensus        88 ~~v~-pyf~k~E~~~~~~~~~~hg~~Gpl~v~~~~~-~~~~~~~~~~a~~~~G~-----~~~~~d~n~~~~~G~~~~~~~  160 (180)
                      ++|+ |||+|+|++..+.     +.....   ++.. ..++...|.++++++|+     |. ..|+|.+...|++..+.+
T Consensus       141 ~~l~~pyy~~~E~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~a~~~~G~~~~~~p~-~~d~n~~~~~g~~~~~~~  211 (507)
T 1coy_A          141 NEMYNKYFPRANTGLGVN-----NIDQAW---FESTEWYKFARTGRKTAQRSGFTTAFVPN-VYDFEYMKKEAAGQVTKS  211 (507)
T ss_dssp             HHHHHTHHHHHHHHHTCB-----CCCHHH---HHHCGGGHHHHHHHHHHHHTTCCEEECCB-SBCHHHHHHHHTTCSCCS
T ss_pred             hcchhHHHHHHHHHhCCC-----CCCCcc---ccccccchHHHHHHHHHHHcCCCCccCCc-ccccCcccccCCCcccCc
Confidence            9999 9999999987542     110110   0111 25788899999999999     77 445765544444444433


Q ss_pred             ---------ccCCeechhhHhhhcc
Q psy9925         161 ---------TRNGARLSAAKATDFV  176 (180)
Q Consensus       161 ---------~~~g~R~sa~~ayl~~  176 (180)
                               +.+| |+++..+||.+
T Consensus       212 ~~~g~C~~gc~~g-R~s~~~~~l~~  235 (507)
T 1coy_A          212 GLGGEVIYGNNAG-KKSLDKTYLAQ  235 (507)
T ss_dssp             TTTTCSTTCCSSS-BCCTTTTHHHH
T ss_pred             cccccccccCCCC-CcChHHHHHHH
Confidence                     4689 99999999975

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.70  E-value=7.1e-19  Score=153.44  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=98.9

Q ss_pred             CCCccccccch--------------hhhc------ccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCc
Q psy9925          29 TGWGYKNVLPY--------------FLKS------EHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGY   87 (180)
Q Consensus        29 ~~W~~~t~~~~--------------~~~~------~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~   87 (180)
                      .+|.|.++||.              ...+      +++ +.+++||+|||||.||+|+|.|+.+.|||.|+    ++|.|
T Consensus        60 ~~w~~~t~p~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~  135 (504)
T 1n4w_A           60 SSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDS  135 (504)
T ss_dssp             GSBSCSBCCCCTTCHHHHGGGCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCH
T ss_pred             ccccccccccccccccccccccccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccch
Confidence            68999998761              0122      556 88999999999999999999999999999996    79999


Q ss_pred             cchh-HHHHhhhcCCCCCCCCCCCCCCceeeecCCCCChHHHHHHHHHHHcCC-----CCCCCCCCCCCCccccccc---
Q psy9925          88 KNVL-PYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGY-----PTDVDIGHGRLREGFYRAQ---  158 (180)
Q Consensus        88 ~~v~-pyf~k~E~~~~~~~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~-----~~~~~d~n~~~~~G~~~~~---  158 (180)
                      ++|+ |||+|+|++..+..     ..+.++ +... ..|+.+.|.++++++|+     |. ..|+|.+...|++..+   
T Consensus       136 ~~l~~pyy~~~E~~~~~~~-----~~~~~~-~~~~-~~p~~~~~~~a~~~~G~~~~~~p~-~~d~n~~~~~g~g~~~~~~  207 (504)
T 1n4w_A          136 SEMYDRYFPRANSMLRVNH-----IDTKWF-EDTE-WYKFARVSREQAGKAGLGTVFVPN-VYDFGYMQREAAGEVPKSA  207 (504)
T ss_dssp             HHHHHTHHHHHHHHHTCBC-----CCHHHH-HHCG-GGHHHHHHHHHHHHTTCCEEECCB-SBCHHHHHHHHTTSSCCSG
T ss_pred             hhhhhHHHHHHHHHhCCCC-----CCcccc-cCCC-cchHHHHHHHHHHHcCCCCccCCc-ccccCccccccCccccCCc
Confidence            9999 99999999864321     011111 0000 24678899999999999     66 5557654444443333   


Q ss_pred             ------ccccCCeechhhHhhhcc
Q psy9925         159 ------MTTRNGARLSAAKATDFV  176 (180)
Q Consensus       159 ------~~~~~g~R~sa~~ayl~~  176 (180)
                            ..+.+| |+++..+||.+
T Consensus       208 ~~G~c~~g~~~g-r~s~~~~~l~~  230 (504)
T 1n4w_A          208 LATEVIYGNNHG-KQSLDKTYLAA  230 (504)
T ss_dssp             GGTCSTTCCSSS-BCCTTTTHHHH
T ss_pred             ccccccccCCCC-ccCHHHHHHHH
Confidence                  334789 99999999965

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.38  E-value=3.1e-13  Score=118.53  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=90.5

Q ss_pred             cccccccccCCcccccceeccCCCchhHHH---HHHhccCCCCccchhHHHHhhhcCCCCCCCCCCCCCCceeeecCCCC
Q psy9925          47 LQYNVRKVMGGTTVLNGLMYCRGDSSDYDE---YEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDL  123 (180)
Q Consensus        47 ~~~~~g~~lGGss~in~~~~~r~~~~~~d~---W~~~g~~gW~~~~v~pyf~k~E~~~~~~~~~~hg~~Gpl~v~~~~~~  123 (180)
                      ..+++|+++||||.||+|+|.|+.+.||+.   |    ..+|+|++  |||+|+|++.+.  ...++.+|+.      +.
T Consensus        85 ~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~~--~~~~~~~g~~------~~  150 (546)
T 1kdg_A           85 ITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLPS--TDHPSTDGQR------YL  150 (546)
T ss_dssp             BSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSCC--BSCCSTTSCC------CS
T ss_pred             cccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCCC--CccCCCCCCc------cC
Confidence            456899999999999999999999999987   9    47899998  999999987643  2234444543      34


Q ss_pred             ChHHHHHHHHHHHcCCCCCCCCCC-C--CCCcccccccccccCCeechhhHhhhcc
Q psy9925         124 PDLGHTLLAAGRELGYPTDVDIGH-G--RLREGFYRAQMTTRNGARLSAAKATDFV  176 (180)
Q Consensus       124 ~~~~~~~~~a~~~~G~~~~~~d~n-~--~~~~G~~~~~~~~~~g~R~sa~~ayl~~  176 (180)
                      .+....|.++++++|++. .+ ++ +  ....|++..+.++.+|.|++++.+||.+
T Consensus       151 ~~~~~~~~~a~~~~G~~~-~~-~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~  204 (546)
T 1kdg_A          151 EQSFNVVSQLLKGQGYNQ-AT-INDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQT  204 (546)
T ss_dssp             CHHHHHHHHHHHTTTCEE-CC-GGGSTTCCTTEEEECCBCEETTEECHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHCCCCc-CC-ccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHH
Confidence            577788999999999976 43 22 1  2456888888888999999999999865

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.35  E-value=5.3e-13  Score=117.22  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             CCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCCCC
Q psy9925          29 TGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQ  107 (180)
Q Consensus        29 ~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~~~  107 (180)
                      .+| |.+.||.  .+.++ +.+++||+|||||.||+|.|.|+.+.||+.+   | .+|+|++++|||+|+|+....    
T Consensus        79 ~~~-~~t~~q~--~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~----  147 (536)
T 1ju2_A           79 EDD-GKTPVER--FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVY----  147 (536)
T ss_dssp             CCC-SSSSEEE--EECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCB----
T ss_pred             CCc-CcCCCcc--ccCCCcceeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCC----
Confidence            356 7888886  45666 8889999999999999999999999999731   1 139999999999999986421    


Q ss_pred             CCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCC---CCCCCCCcccccccccccCCeechhhHhhhc
Q psy9925         108 NHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVD---IGHGRLREGFYRAQMTTRNGARLSAAKATDF  175 (180)
Q Consensus       108 ~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~---d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~  175 (180)
                                  .....++...|.++++++|++....   |.+.+...|...+   ..+|+|+++++ |+.
T Consensus       148 ------------~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~g~~~~---~~~g~r~s~~~-~~~  202 (536)
T 1ju2_A          148 ------------KPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTF---DNKGTRHAADE-LLN  202 (536)
T ss_dssp             ------------CCCCCHHHHHHHHHHHHTTCCCEEEECCBCCSEEEECEESB---CTTSBBCCGGG-GGG
T ss_pred             ------------CCCCCcHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeEEE---CCCCeEecHHH-hhh
Confidence                        0123577889999999999864111   1122222222211   14899999887 764

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.97  E-value=3.3e-10  Score=100.55  Aligned_cols=64  Identities=25%  Similarity=0.454  Sum_probs=53.9

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCC-CCccccccchhhhcccc-ccc---------ccccccCCcccccce
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGAT-GWGYKNVLPYFLKSEHN-LQY---------NVRKVMGGTTVLNGL   64 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~-~W~~~t~~~~~~~~~~~-~~~---------~~g~~lGGss~in~~   64 (180)
                      |||||++|+|+|+||++.|||.|++.++. +|+|+.+.++|+++++. .+-         .....+|..++++..
T Consensus       100 LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v~  174 (583)
T 3qvp_A          100 LGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAG  174 (583)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEB
T ss_pred             cCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEEec
Confidence            79999999999999999999999998877 99999999999888765 211         135678888888874

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.91  E-value=6.2e-10  Score=98.48  Aligned_cols=64  Identities=23%  Similarity=0.513  Sum_probs=53.6

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccc-ccc--------ccccccCCcccccce
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHN-LQY--------NVRKVMGGTTVLNGL   64 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~-~~~--------~~g~~lGGss~in~~   64 (180)
                      |||||++|+|+|+||++.|||.|++. ++.+|+|+.+.++|+++++. ..-        .....+|..++++..
T Consensus        84 lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           84 LGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             EcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            79999999999999999999999997 99999999999999888765 211        123678878888764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.79  E-value=1.7e-09  Score=95.80  Aligned_cols=64  Identities=23%  Similarity=0.517  Sum_probs=53.6

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhcccc-cc----cccccccCCcccccce
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN-LQ----YNVRKVMGGTTVLNGL   64 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~~-~~----~~~g~~lGGss~in~~   64 (180)
                      |||||++|+|+|+||++.|||.|++.++.+|+|+.+.++|+++++. ..    .+....+|..++++..
T Consensus        90 LGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~  158 (577)
T 3q9t_A           90 LGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPIS  158 (577)
T ss_dssp             TTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEE
T ss_pred             ccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEee
Confidence            7999999999999999999999999899999999999999887764 21    1224467888888774

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.75  E-value=5.6e-09  Score=92.61  Aligned_cols=64  Identities=28%  Similarity=0.529  Sum_probs=53.3

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhccccccc----------ccccccCCcccccce
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY----------NVRKVMGGTTVLNGL   64 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~----------~~g~~lGGss~in~~   64 (180)
                      |||||++|+|+|+|+++.|||.|.+. ++.+|+|+.+.++|++++.....          .....+|..++++..
T Consensus       104 lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v~  178 (587)
T 1gpe_A          104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSG  178 (587)
T ss_dssp             TTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEB
T ss_pred             ccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEEEc
Confidence            79999999999999999999999998 89999999999999888765221          134567777787764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.51  E-value=6.5e-08  Score=85.02  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=56.2

Q ss_pred             CCcccccccceeccCChhhhHHHHh-cCCCCCccccccchhhhccccccccc-ccccCCcccccceeccCCCchhHHHHH
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQYNV-RKVMGGTTVLNGLMYCRGDSSDYDEYE   78 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~-~~~~~W~~~t~~~~~~~~~~~~~~~~-g~~lGGss~in~~~~~r~~~~~~d~W~   78 (180)
                      |||||++|.|+|+|+++.|||.|.+ .++.+|+|+.+.++|++++....... ...+|.++++.... ........+.|.
T Consensus        93 lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~-~~~~~~~~~~~~  171 (546)
T 2jbv_A           93 MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMN-VPPKDPTGVALL  171 (546)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEE-CCSCCHHHHHHH
T ss_pred             cccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEec-CCCCCHHHHHHH
Confidence            7999999999999999999999998 78889999999999988876522111 34566666665532 222233444554


Q ss_pred             H
Q psy9925          79 K   79 (180)
Q Consensus        79 ~   79 (180)
                      +
T Consensus       172 ~  172 (546)
T 2jbv_A          172 D  172 (546)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.46  E-value=7.9e-08  Score=83.29  Aligned_cols=46  Identities=33%  Similarity=0.785  Sum_probs=42.2

Q ss_pred             CCcccccccceeccCChhhhHHHHh-cCCCCCccccccchhhhcccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHN   46 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~-~~~~~W~~~t~~~~~~~~~~~   46 (180)
                      |||||++|.|+|+|+++.|||.|.. .++.+|+|+.+.++|++++..
T Consensus        97 lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~  143 (526)
T 3t37_A           97 IGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH  143 (526)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEEC
T ss_pred             ECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhc
Confidence            7999999999999999999999976 578899999999999888765

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.75  E-value=4.8e-06  Score=72.28  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=37.3

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCcccccc-chhhhcccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVL-PYFLKSEHN   46 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~-~~~~~~~~~   46 (180)
                      |||||++|.|+|+|+++.|||.|.    ..|.|+.+. ++|+++++.
T Consensus       107 lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~  149 (504)
T 1n4w_A          107 VGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSM  149 (504)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHH
T ss_pred             cchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHH
Confidence            799999999999999999999996    579998888 888777654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.71  E-value=6e-06  Score=71.75  Aligned_cols=42  Identities=19%  Similarity=0.378  Sum_probs=37.1

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCcccccc-chhhhcccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVL-PYFLKSEHN   46 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~-~~~~~~~~~   46 (180)
                      |||||++|.|+|+|+++.|||.|.    ..|.|+.+. ++|++++..
T Consensus       112 lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~  154 (507)
T 1coy_A          112 VGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTG  154 (507)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHH
T ss_pred             cchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHH
Confidence            799999999999999999999996    378998888 888777654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.82  E-value=0.00018  Score=62.89  Aligned_cols=41  Identities=27%  Similarity=0.503  Sum_probs=33.4

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH   45 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~   45 (180)
                      |||||++|.|+|+|+++.|||.+    ..+|.|+.+.++|+.+++
T Consensus       103 lGGsS~in~~~~~R~~~~d~~~~----G~~W~~~~~~p~~~~~e~  143 (536)
T 1ju2_A          103 LGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVED  143 (536)
T ss_dssp             TTGGGGTSCCEECBCCTTSSTTS----SSCCCHHHHHHHHHHHHH
T ss_pred             ccccccccCeEEEeCCHHHHhhc----cCCCChHHHHHHHHhhhc
Confidence            79999999999999999999742    235999888887766554

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.67  E-value=0.00025  Score=61.84  Aligned_cols=39  Identities=28%  Similarity=0.654  Sum_probs=32.6

Q ss_pred             CCcccccccceeccCChhhhHH---HHhcCCCCCccccccchhhhccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDE---YEKLGATGWGYKNVLPYFLKSEH   45 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~---w~~~~~~~W~~~t~~~~~~~~~~   45 (180)
                      |||||++|.|+|+|+++.|||.   |    +.+|+|..  ++++++++
T Consensus        93 lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~  134 (546)
T 1kdg_A           93 VGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSS  134 (546)
T ss_dssp             TTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHH
T ss_pred             ecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHh
Confidence            7999999999999999999998   8    35788887  55555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	0.002

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 16/168 (9%), Positives = 38/168 (22%), Gaps = 18/168 (10%)

Query: 23  YEKLGATGWGYKNVL-PYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK-- 79
             +       + NV+    +     +   V   +  T+      + R  S+   +  +  
Sbjct: 51  TVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNL 110

Query: 80  --------LGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLP---DLGH 128
                   +G     +    P F + +  L        A        +            
Sbjct: 111 SGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDD-ADADDAEWDRLYTKAESYFQTGTD 169

Query: 129 TLLAAGRELGYPTDVDIGHGRLREGFYR---AQMTTRNGARLSAAKAT 173
               + R       +   +   R+       A   +      S+A   
Sbjct: 170 QFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTV 217

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 31  WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKN 89
             Y  V P    +         K +GG+T++NG  + R D    D +EK  G  GW + N
Sbjct: 83  QNYLTV-PL--INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDN 139

Query: 90  VLPYFLKSEHNLQYNSSQN----------HARGGLLTVSHYNDLP---DLGHTLLAAGRE 136
           +  Y  K+E      ++Q           H   G +     ++      +   L+     
Sbjct: 140 MFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSA 199

Query: 137 LGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
           LG P   D   G  R           N  R+ AA+A
Sbjct: 200 LGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARA 235

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.91
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.91
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.7
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.54
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.54
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.45
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.45
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.34
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.54
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.49
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	91.2

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.91  E-value=5.5e-25  Score=184.51  Aligned_cols=147  Identities=22%  Similarity=0.292  Sum_probs=128.1

Q ss_pred             cCCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCC
Q psy9925          26 LGATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY  103 (180)
Q Consensus        26 ~~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~  103 (180)
                      .+.++|+|.++|+    ++++ +.+++||++||||.||+|+|.|+.+.||+.|.+. |+++|+|++++|||+|+|++..+
T Consensus        78 ~~~~dw~~~t~p~----~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~  153 (391)
T d1gpea1          78 GTTVDQNYLTVPL----INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTP  153 (391)
T ss_dssp             TSTTBCCEECCCC----TTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCC
T ss_pred             CCCcccCceeeec----CCCcEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCC
Confidence            3568999999987    4677 8899999999999999999999999999999988 99999999999999999998764


Q ss_pred             C----------CCCCCCCCCceeeecCC---CCChHHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccc-CCeechh
Q psy9925         104 N----------SSQNHARGGLLTVSHYN---DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTR-NGARLSA  169 (180)
Q Consensus       104 ~----------~~~~hg~~Gpl~v~~~~---~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~-~g~R~sa  169 (180)
                      .          +...|+..||+++....   ...|+..+|.++++++|++. .++++.+.+.++...+.++. ++.|.++
T Consensus       154 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~-~~~~~~g~~~~~~~~~~~~~~~~~r~s~  232 (391)
T d1gpea1         154 TAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPV-QQDFLCGHPRGVSMIMNNLDENQVRVDA  232 (391)
T ss_dssp             CHHHHHHTCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCB-SCCTTSSCCCEEECCEESBCTTCCBCCH
T ss_pred             cchhcccccCccccccCCCCcccccccccccccCHHHHHHHHHHHhcCCce-eeccccCcccccccccceeeccccccch
Confidence            3          45679999999997653   34688999999999999998 66699988888888777776 6689999


Q ss_pred             hHhhhccc
Q psy9925         170 AKATDFVE  177 (180)
Q Consensus       170 ~~ayl~~~  177 (180)
                      +.+|+.|.
T Consensus       233 a~~~~~p~  240 (391)
T d1gpea1         233 ARAWLLPN  240 (391)
T ss_dssp             HHHHTTTT
T ss_pred             hhhccCcc
Confidence            99999875

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.91  E-value=1.4e-24  Score=181.46  Aligned_cols=148  Identities=22%  Similarity=0.294  Sum_probs=127.8

Q ss_pred             cCCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCC
Q psy9925          26 LGATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY  103 (180)
Q Consensus        26 ~~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~  103 (180)
                      .+.++|.|.++++.   ++++ +.+++||++||||.||+|+|.|+.+.|||.|+++ ++.+|+|++++|||+|+|++..+
T Consensus        71 ~~~~dw~~~t~~~~---~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~  147 (385)
T d1cf3a1          71 GSSVDHAYETVELA---TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAP  147 (385)
T ss_dssp             TSTTBCCEECCCCT---TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCC
T ss_pred             CCCCCcCccccCcC---CCCceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCC
Confidence            35689999999874   6778 8899999999999999999999999999999998 89999999999999999998765


Q ss_pred             C----------CCCCCCCCCceeeecCC---CCChHHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccc-CCeechh
Q psy9925         104 N----------SSQNHARGGLLTVSHYN---DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTR-NGARLSA  169 (180)
Q Consensus       104 ~----------~~~~hg~~Gpl~v~~~~---~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~-~g~R~sa  169 (180)
                      .          +...||..+|+.++...   ...|+.+.|.++++++|++. ..|+|.....+++..+.++. ...|+++
T Consensus       148 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~-~~d~n~~~~~~~~~~~~~~~~~~~~~~s  226 (385)
T d1cf3a1         148 NAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPT-KKDFGCGDPHGVSMFPNTLHEDQVRSDA  226 (385)
T ss_dssp             CHHHHHHTCCCCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCB-CCCTTSSCCCEEECCCBSBCTTCBBCCH
T ss_pred             CcccccccccccccccCCcccccccccccccccCHHHHHHHHHHHHcCCCC-cCCcccccccccccccccccccccchhh
Confidence            3          34579999999987653   34689999999999999999 66699988888888887776 5677778


Q ss_pred             hHhhhccc
Q psy9925         170 AKATDFVE  177 (180)
Q Consensus       170 ~~ayl~~~  177 (180)
                      +.+||.|.
T Consensus       227 ~~~~~~p~  234 (385)
T d1cf3a1         227 AREWLLPN  234 (385)
T ss_dssp             HHHHTGGG
T ss_pred             hhhhcCch
Confidence            88898875

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.70  E-value=6.5e-18  Score=139.43  Aligned_cols=133  Identities=16%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             CCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCC--CccchhHHHHhhhcCCCCCCC
Q psy9925          30 GWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW--GYKNVLPYFLKSEHNLQYNSS  106 (180)
Q Consensus        30 ~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW--~~~~v~pyf~k~E~~~~~~~~  106 (180)
                      .|.+.+.++.  .+.++ +.+++|++|||+|.||+|+|.|+.+.||++|.     +|  +|++++|||+|+|++.+.  .
T Consensus        64 ~~~~~~~~~~--~~~~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~-----gwp~~~~~l~py~~~~e~~~~~--~  134 (360)
T d1kdga1          64 FESLFTDSNP--FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPS--T  134 (360)
T ss_dssp             GGGGGTCSCC--TTBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG-----TCCGGGSCCHHHHHHHHHHSCC--B
T ss_pred             ccccccCCCc--ccCCccccccceeeecchhccccccccccchhhheecc-----cccccccchhhhhhhhhccccc--c
Confidence            3566666775  45666 88999999999999999999999999999883     56  789999999999998764  3


Q ss_pred             CCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCC-CCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925         107 QNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTD-VDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE  177 (180)
Q Consensus       107 ~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~-~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~  177 (180)
                      .+|+.+|++.+      .+....+.++++++|+... ..|.+.....+++.++.++.+|.|+|++.+||.|.
T Consensus       135 ~~~~~~g~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a  200 (360)
T d1kdga1         135 DHPSTDGQRYL------EQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTA  200 (360)
T ss_dssp             SCCSTTSCCCS------CHHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHH
T ss_pred             ceecCCCcccc------cchhHHHHHHHHHhhccCCCcccCCCccccccceeeeeccccccccccchhhhhh
Confidence            56777787754      2345566777777776541 23355566778888898999999999999999764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.54  E-value=1.2e-15  Score=125.34  Aligned_cols=127  Identities=18%  Similarity=0.099  Sum_probs=101.5

Q ss_pred             CCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCCC
Q psy9925          28 ATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSS  106 (180)
Q Consensus        28 ~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~~  106 (180)
                      ...|.+.+.++.  .+.++ +.+++||+|||||.||+|+|.|+.+.||+.|.    .+|+|+++.|||+++|.....   
T Consensus        77 ~~~~~~~~~~~~--~~~~~~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~---  147 (351)
T d1ju2a1          77 QQEDDGKTPVER--FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVY---  147 (351)
T ss_dssp             HSCCCSSSSEEE--EECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCB---
T ss_pred             cCCCCCCCcccc--ccCCCceeeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeeccccccc---
Confidence            356777788776  45666 88999999999999999999999999999883    689999999999999976422   


Q ss_pred             CCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925         107 QNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE  177 (180)
Q Consensus       107 ~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~  177 (180)
                                   ..........+.+++.++|++. ..|++.....++.....+++++.|++++.+||.+.
T Consensus       148 -------------~~~~~~~~~~~~~a~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~a  204 (351)
T d1ju2a1         148 -------------KPNSQSWQSVTKTAFLEAGVHP-NHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKG  204 (351)
T ss_dssp             -------------CCCCCHHHHHHHHHHHHTTCCC-EEEECCBCCSEEEECEESBCTTSBBCCGGGGGGGS
T ss_pred             -------------ccccccccccccchhhhhcccc-ccccccccccccccccccccCCCcccccchhhccc
Confidence                         0122345667778888999988 55588777778888888888777777788898753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.54  E-value=9e-09  Score=83.25  Aligned_cols=123  Identities=14%  Similarity=0.059  Sum_probs=79.1

Q ss_pred             ccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCCCCCCCCCCceeeecCCC
Q psy9925          44 EHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYND  122 (180)
Q Consensus        44 ~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~~~~hg~~Gpl~v~~~~~  122 (180)
                      +.+ +.+++++++||+|.+|++.+.|+.+.||+.|...   ++.++.+.|||+++|+......       .+..+.....
T Consensus        96 ~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~---~~~~~~~~~~y~~~e~~lgv~~-------~~~~~~~~~~  165 (370)
T d3coxa1          96 RFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPS---VDSNEMYNKYFPRANTGLGVNN-------IDQAWFESTE  165 (370)
T ss_dssp             ECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTT---SCHHHHHHTHHHHHHHHHTCBC-------CCHHHHHHCG
T ss_pred             CCCcceeeeeccccccccccCceeccCCHHHhhccccc---CCcHHHHHHHHHHHHHhcCCcc-------ccCCcccCCC
Confidence            334 6778999999999999999999999999999632   2334669999999998764310       0111111223


Q ss_pred             CChHHHHHHHHHHHcCCCCCCC----CCCCC--------CCcccccccccccCCeechhhHhhhcc
Q psy9925         123 LPDLGHTLLAAGRELGYPTDVD----IGHGR--------LREGFYRAQMTTRNGARLSAAKATDFV  176 (180)
Q Consensus       123 ~~~~~~~~~~a~~~~G~~~~~~----d~n~~--------~~~G~~~~~~~~~~g~R~sa~~ayl~~  176 (180)
                      ..++.+.+.++++++|++....    +++..        .+..++.......++.|.|+..+||.+
T Consensus       166 ~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~  231 (370)
T d3coxa1         166 WYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQ  231 (370)
T ss_dssp             GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHH
T ss_pred             CccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHHHHHH
Confidence            3567788888999888764211    11110        111222222334467788888899864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.45  E-value=2.1e-08  Score=80.87  Aligned_cols=120  Identities=15%  Similarity=0.057  Sum_probs=75.3

Q ss_pred             cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCCCCCCCCCCceeeecCCCCChH
Q psy9925          47 LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDL  126 (180)
Q Consensus        47 ~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~~~~hg~~Gpl~v~~~~~~~~~  126 (180)
                      +.+++|+++||+|.||++.+.|+.+.+|+.|..   ..|.++++.|||+++|+...+..       .|...-......+.
T Consensus        96 ~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~-------~~~~~~~~~~~~~~  165 (367)
T d1n4wa1          96 MSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNH-------IDTKWFEDTEWYKF  165 (367)
T ss_dssp             CEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBC-------CCHHHHHHCGGGHH
T ss_pred             cceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCC-------CCCCccccCCCChH
Confidence            667899999999999999999999999999853   23345779999999998765420       01111011122355


Q ss_pred             HHHHHHHHHHcCCCCCCC----CC-------CCC-CCcccccccccccCCeechhhHhhhcc
Q psy9925         127 GHTLLAAGRELGYPTDVD----IG-------HGR-LREGFYRAQMTTRNGARLSAAKATDFV  176 (180)
Q Consensus       127 ~~~~~~a~~~~G~~~~~~----d~-------n~~-~~~G~~~~~~~~~~g~R~sa~~ayl~~  176 (180)
                      .+.+.+++..+|+.....    ++       +.. ....+.........+.|.|+...||.+
T Consensus       166 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~  227 (367)
T d1n4wa1         166 ARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAA  227 (367)
T ss_dssp             HHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhHH
Confidence            677888888888754111    00       000 111111112233456788888889864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.45  E-value=7.3e-08  Score=79.14  Aligned_cols=64  Identities=28%  Similarity=0.540  Sum_probs=51.1

Q ss_pred             CCcccccccceeccCChhhhHHHHh-cCCCCCccccccchhhhcccc-cc---------cccccccCCcccccce
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHN-LQ---------YNVRKVMGGTTVLNGL   64 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~-~~~~~W~~~t~~~~~~~~~~~-~~---------~~~g~~lGGss~in~~   64 (180)
                      |||||++|+|+|+|+++.|||.|.. .++.+|+|+.+.++|++++.. ..         ......+|...+++..
T Consensus       104 lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  178 (391)
T d1gpea1         104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSG  178 (391)
T ss_dssp             TTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEB
T ss_pred             cCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCccccc
Confidence            7999999999999999999999987 478899999999998877753 11         1234566777777664

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.34  E-value=5.4e-08  Score=79.63  Aligned_cols=46  Identities=35%  Similarity=0.764  Sum_probs=41.7

Q ss_pred             CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHN   46 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~   46 (180)
                      |||||++|+|+|+|+++.|||.|.+. +..+|+|+.+.++|++++..
T Consensus        98 lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~  144 (385)
T d1cf3a1          98 LGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERA  144 (385)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEE
T ss_pred             ccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhh
Confidence            79999999999999999999999985 67899999999998777753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.54  E-value=8.8e-06  Score=65.54  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=36.1

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhcccc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN   46 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~~   46 (180)
                      |||||++|.|+|+|+.+.|||.|.   ...|+|+.+.++|++++..
T Consensus        88 lGGsS~in~~~~~r~~~~D~~~~~---gwp~~~~~l~py~~~~e~~  130 (360)
T d1kdga1          88 VGGGTSVNGALYWYPNDGDFSSSV---GWPSSWTNHAPYTSKLSSR  130 (360)
T ss_dssp             TTGGGGTSCCBCCCCCGGGGCGGG---TCCGGGSCCHHHHHHHHHH
T ss_pred             ecchhccccccccccchhhheecc---cccccccchhhhhhhhhcc
Confidence            799999999999999999999884   2345888888888777654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.49  E-value=4.9e-06  Score=66.98  Aligned_cols=40  Identities=28%  Similarity=0.501  Sum_probs=34.3

Q ss_pred             CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhcc
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE   44 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~   44 (180)
                      |||||++|.|+|+|+++.|||.|.    .+|+|+.+.+++..++
T Consensus       103 lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e  142 (351)
T d1ju2a1         103 LGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVE  142 (351)
T ss_dssp             TTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHH
T ss_pred             cccccccceeeeccCCHHHHhhcc----cccChhHhCcceeecc
Confidence            799999999999999999999883    5899988888765444

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.00  E-value=0.029  Score=43.63  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CCcccccccceeccCChhhhHHHHh
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK   25 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~   25 (180)
                      |||+|.+|.++++|+++.+||.|..
T Consensus       104 lGG~S~i~~~~~~r~~~~~f~~~~~  128 (367)
T d1n4wa1         104 VGGGSLVNGGMAVEPKRSYFEEILP  128 (367)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHCT
T ss_pred             cCCCCceecceeeccChhHhhcccc
Confidence            7999999999999999999999853

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=91.20  E-value=0.04  Score=42.92  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=23.5

Q ss_pred             CCcccccccceeccCChhhhHHHHh
Q psy9925           1 MGGTTVLNGLMYCRGDSSDYDEYEK   25 (180)
Q Consensus         1 ~gG~s~~n~~~~~rg~~~d~d~w~~   25 (180)
                      |||+|.+|.++++|+++.||+.|..
T Consensus       108 vGG~S~~~~~~~~r~~~~df~~~~~  132 (370)
T d3coxa1         108 VGGGSLVNGGMAVTPKRNYFEEILP  132 (370)
T ss_dssp             TTGGGGTSCCBCCCCCHHHHHHHCT
T ss_pred             ccccccccCceeccCCHHHhhcccc
Confidence            7999999999999999999999964