Psyllid ID: psy9993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-----
AHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPKSKSYVSLLEN
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHEEEEEEEccccccHHHHccc
ahysrsdlltdrgltklgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrvltnlgltdrgltnlgltdrgltnlgltdrdvtddgvGAALGysaseidselnyswnyepngmahysrsdlltdrgltklgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltpeayqsgpgiiglshasgmifrnsnffqNIDTLRLLYTSLDRSkleyatviwapksksYVSLLEN
ahysrsdlltdrgltklgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrvltnlgltdrgltnlgltdrgltnlgltdrdvtDDGVGAALGysaseidseLNYSWNYEPNGMAHYSRSDLLTDRGLTKLgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlgltdrgltnlGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEyatviwapksksyvsllen
AHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPKSKSYVSLLEN
***********RGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPK**********
*****SD*****************************************************D******************************RGLTNLGLTDRDVTDDGVGAALGYS*SEIDSE**YSW**************LLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL*D*GLTNL*LT**G***************LTDRGLTNLGLTDRGLTNLGLTD*GLTNLGLTDRGLTNLGLTD*******************DRGLTNLGLTDRGLTNLGL**********************************************************************LEYATVIWAPK**********
AHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPKSKSYVSLLEN
***************KLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPKSKSYVS****
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AHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKLEYATVIWAPKSKSYVSLLEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query605 2.2.26 [Sep-21-2011]
Q9H0J4 1663 Glutamine-rich protein 2 yes N/A 0.879 0.319 0.303 2e-55
Q79FS0618 Uncharacterized PPE famil no N/A 0.644 0.631 0.312 6e-30
Q7D7A1615 Uncharacterized PPE famil yes N/A 0.656 0.645 0.309 1e-27
Q7D5C5582 Uncharacterized PPE famil no N/A 0.616 0.640 0.263 3e-22
Q10778678 Uncharacterized PPE famil no N/A 0.697 0.622 0.300 3e-21
Q79FW4645 Uncharacterized PPE famil no N/A 0.433 0.406 0.291 9e-17
Q6MWY2 2523 Uncharacterized PPE famil no N/A 0.555 0.133 0.321 2e-14
Q8ILR9 4662 Protein PF14_0175 OS=Plas yes N/A 0.383 0.049 0.128 9e-14
Q86VE3508 Spermidine/spermine N(1)- no N/A 0.542 0.645 0.166 1e-13
Q79FL2 1053 Uncharacterized PPE famil no N/A 0.365 0.209 0.318 1e-10
>sp|Q9H0J4|QRIC2_HUMAN Glutamine-rich protein 2 OS=Homo sapiens GN=QRICH2 PE=1 SV=1 Back     alignment and function desciption
 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 210/561 (37%), Gaps = 29/561 (5%)

Query: 16  KLGLTDR-GLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVL 74
           +L  TD+ GL ++     G+T  G   R +  LG+  RG    G+  +GL   G+  + L
Sbjct: 290 ELPSTDQHGLVSVSAYQHGMTFPGTDQRSMEPLGMDQRGCVISGMGQQGLVPPGIDQQGL 349

Query: 75  TNLGLTDRGLTNLGLTDR-GLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPN 133
           T L + D+    L  TD+ GL + GL        G           +   L  +   +P 
Sbjct: 350 T-LPVVDQHGLVLPFTDQHGLVSPGLMPISADQQGF----------VQPSLEATGFIQPG 398

Query: 134 GMAHYSRSDLLT----DRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 189
              H    DL+      R L + G    GL   G   RGL   G+   GL   G   RGL
Sbjct: 399 TEQH----DLIQSGRFQRALVQRGAYQPGLVQPGADQRGLVRPGMDQSGLAQPGADQRGL 454

Query: 190 TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 249
              G+   GL   G    GL   G     L   G     L   G+   G+   G   R L
Sbjct: 455 VWPGMDQSGLAQPGRDQHGLIQPGTGQHDLVQSGTGQGVLVQPGVDQPGMVQPGRFQRAL 514

Query: 250 TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 309
              G    GL   G     +   G    GL   G     L   G    GL   G+  RGL
Sbjct: 515 VQPGAYQPGLVQPGADQIDVVQPGADQHGLVQSGADQSDLAQPGAVQHGLVQPGVDQRGL 574

Query: 310 TNLGL-TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 368
                   RGL   G   RGL   G    GL   G+   GL   G   R L   G+  RG
Sbjct: 575 AQPRADHQRGLVPPGADQRGLVQPGADQHGLVQPGVDQHGLAQPGEVQRSLVQPGIVQRG 634

Query: 369 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 428
           L   G   RGL   G   RGL   G+  RGL   G   RGL   G    GL   G   RG
Sbjct: 635 LVQPGAVQRGLVQPGAVQRGLVQPGVDQRGLVQPGAVQRGLVQPGAVQHGLVQPGADQRG 694

Query: 429 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 488
           L   G+  RGL   G+  RGL   G+  RGL   G    GL   G    G+   G+  +G
Sbjct: 695 LVQPGVDQRGLVQPGVDQRGLVQPGMDQRGLIQPGADQPGLVQPGAGQLGMVQPGIGQQG 754

Query: 489 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL-TPEAYQSG 547
           +        GL   G    GL   G     L+  G   RGL   G+   GL  P AYQ  
Sbjct: 755 MVQPQADPHGLVQPGAYPLGLVQPGAYLHDLSQSGTYPRGLVQPGMDQYGLRQPGAYQ-- 812

Query: 548 PGIIGLSHASGMIFRNSNFFQ 568
           PG+I    A G   R S+ FQ
Sbjct: 813 PGLI----APGTKLRGSSTFQ 829

Homo sapiens (taxid: 9606)
>sp|Q79FS0|PPE16_MYCTU Uncharacterized PPE family protein PPE16 OS=Mycobacterium tuberculosis GN=ppe16 PE=3 SV=1 Back     alignment and function description
>sp|Q7D7A1|PPE40_MYCTU Uncharacterized PPE family protein PPE40 OS=Mycobacterium tuberculosis GN=ppe40 PE=3 SV=1 Back     alignment and function description
>sp|Q7D5C5|PPE62_MYCTU Uncharacterized PPE family protein PPE62 OS=Mycobacterium tuberculosis GN=ppe62 PE=3 SV=1 Back     alignment and function description
>sp|Q10778|PPE21_MYCTU Uncharacterized PPE family protein PPE21 OS=Mycobacterium tuberculosis GN=ppe21 PE=3 SV=2 Back     alignment and function description
>sp|Q79FW4|PPE12_MYCTU Uncharacterized PPE family protein PPE12 OS=Mycobacterium tuberculosis GN=ppe12 PE=3 SV=1 Back     alignment and function description
>sp|Q6MWY2|PPE54_MYCTU Uncharacterized PPE family protein PPE54 OS=Mycobacterium tuberculosis GN=ppe54 PE=3 SV=1 Back     alignment and function description
>sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0175 PE=4 SV=1 Back     alignment and function description
>sp|Q86VE3|SATL1_HUMAN Spermidine/spermine N(1)-acetyltransferase-like protein 1 OS=Homo sapiens GN=SATL1 PE=2 SV=3 Back     alignment and function description
>sp|Q79FL2|PPE24_MYCTU Uncharacterized PPE family protein PPE24 OS=Mycobacterium tuberculosis GN=ppe24 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
25395397 712 protein M01D1.5 [imported] - Caenorhabdi 0.874 0.742 0.509 1e-113
25395399581 protein M01D1.6 [imported] - Caenorhabdi 0.829 0.864 0.504 1e-110
82538971 1545 hypothetical protein [Plasmodium yoelii 0.833 0.326 0.220 1e-90
7509618460 hypothetical protein Y38E10A.t - Caenorh 0.672 0.884 0.468 2e-79
344291402 1973 PREDICTED: glutamine-rich protein 2-like 0.808 0.247 0.302 2e-59
354489484 2010 PREDICTED: glutamine-rich protein 2-like 0.828 0.249 0.293 3e-55
119609791 1485 glutamine rich 2, isoform CRA_b [Homo sa 0.879 0.358 0.303 9e-54
14149793 1663 glutamine-rich protein 2 [Homo sapiens] 0.879 0.319 0.303 1e-53
386726944405 translation initiation factor IF-2 [Paen 0.419 0.627 0.384 2e-52
395749477 1924 PREDICTED: LOW QUALITY PROTEIN: glutamin 0.809 0.254 0.277 2e-52
>gi|25395397|pir||D88035 protein M01D1.5 [imported] - Caenorhabditis elegans Back     alignment and taxonomy information
 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 277/544 (50%), Positives = 345/544 (63%), Gaps = 15/544 (2%)

Query: 9   LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 68
           LT  GLT  G T +GLT +G+T +GLT +GLT +GLT  GLT +G T  GLT  GL  +G
Sbjct: 33  LTTMGLTTKGFTTKGLTTMGVTTKGLTTMGLTTKGLTTKGLTTKGFTTKGLTTMGLATMG 92

Query: 69  LTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSW 128
           LT + LT +GLT  GLT  GLT +GLT  GLT + +T  G+   +G +     ++   + 
Sbjct: 93  LTTKGLTTMGLTTMGLTTKGLTTKGLTTKGLTTKGLTTKGL-TTMGLTTKGFTTKGLTTM 151

Query: 129 NYEPNGMAHYSRSDLLTDRGLTKLGLTDRG-----LTNLGLTDRGLTNLGLTDRGLTNLG 183
                G+A       LT +GLT +GLT +G     LT +GL   GLT +GLT +GLT  G
Sbjct: 152 GLTTMGLATMG----LTTKGLTTMGLTTKGFITKGLTTMGLATMGLTTMGLTTKGLTTKG 207

Query: 184 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 243
           LT +GLT +GLT +G    GLT  GL  +GLT  GLT  GLT  GLT +GLT +GLT  G
Sbjct: 208 LTTKGLTTMGLTTKGFITKGLTTMGLATMGLTTMGLTTKGLTTMGLTTMGLTTKGLTTKG 267

Query: 244 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 303
           LT +GLT  GLT +GLT +GLT +G    GL   GL  +GLT  GLT  GLT +GLT  G
Sbjct: 268 LTTKGLTTKGLTTKGLTTMGLTTKGFITKGLNTMGLATMGLTTMGLTTKGLTTKGLTTKG 327

Query: 304 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 363
           LT +GLT  GLT  GLT  G T +GLT +GL   GLT +GLT +GLT  GLT +GLT +G
Sbjct: 328 LTTKGLTTKGLTTMGLTTKGFTTKGLTTMGLATMGLTTMGLTTKGLTTKGLTTKGLTTMG 387

Query: 364 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 423
           LT +GLT  GLT  GLT  GLT +GLT +GL   GLT +GLT  GLT  GLT +GLT  G
Sbjct: 388 LTTKGLTTKGLTTMGLTTKGLTTKGLTTMGLVTMGLTTMGLTTMGLTTKGLTTKGLTTKG 447

Query: 424 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT-----DRGLTNLGLTDRG 478
           LT +GLT +GLT +G T  GLT  GL  +GLT +GLT +GLT      +GLT +GL   G
Sbjct: 448 LTTKGLTTMGLTTKGFTTKGLTTMGLATMGLTTKGLTTMGLTTKGFITKGLTTMGLATMG 507

Query: 479 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 538
           LT +GLT +GLT  GLT +GLT +GLT +G T  GLT  GL  +GLT +GLT +GLT +G
Sbjct: 508 LTTMGLTTKGLTTKGLTTKGLTTMGLTTKGFTTKGLTTMGLATMGLTTKGLTTMGLTTKG 567

Query: 539 LTPE 542
              +
Sbjct: 568 FITK 571

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom:

>gi|25395399|pir||E88035 protein M01D1.6 [imported] - Caenorhabditis elegans Back     alignment and taxonomy information
>gi|82538971|ref|XP_723910.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL] gi|23478367|gb|EAA15475.1| immediate early protein homolog [Plasmodium yoelii yoelii] Back     alignment and taxonomy information
>gi|7509618|pir||T26670 hypothetical protein Y38E10A.t - Caenorhabditis elegans Back     alignment and taxonomy information
>gi|344291402|ref|XP_003417424.1| PREDICTED: glutamine-rich protein 2-like [Loxodonta africana] Back     alignment and taxonomy information
>gi|354489484|ref|XP_003506892.1| PREDICTED: glutamine-rich protein 2-like [Cricetulus griseus] Back     alignment and taxonomy information
>gi|119609791|gb|EAW89385.1| glutamine rich 2, isoform CRA_b [Homo sapiens] Back     alignment and taxonomy information
>gi|14149793|ref|NP_115510.1| glutamine-rich protein 2 [Homo sapiens] gi|74717987|sp|Q9H0J4.1|QRIC2_HUMAN RecName: Full=Glutamine-rich protein 2 gi|12053061|emb|CAB66708.1| hypothetical protein [Homo sapiens] gi|119609790|gb|EAW89384.1| glutamine rich 2, isoform CRA_a [Homo sapiens] gi|190690143|gb|ACE86846.1| glutamine rich 2 protein [synthetic construct] gi|190691517|gb|ACE87533.1| glutamine rich 2 protein [synthetic construct] Back     alignment and taxonomy information
>gi|386726944|ref|YP_006193270.1| translation initiation factor IF-2 [Paenibacillus mucilaginosus K02] gi|384094069|gb|AFH65505.1| translation initiation factor IF-2 [Paenibacillus mucilaginosus K02] Back     alignment and taxonomy information
>gi|395749477|ref|XP_003778951.1| PREDICTED: LOW QUALITY PROTEIN: glutamine-rich protein 2 [Pongo abelii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
UNIPROTKB|Q6MWX9 3157 PPE55 "PPE FAMILY PROTEIN" [My 0.545 0.104 0.329 1.3e-50
UNIPROTKB|Q6MWY2 2523 ppe54 "Uncharacterized PPE fam 0.507 0.121 0.343 2.7e-46
UNIPROTKB|Q6MX48963 PPE6 "PPE family protein" [Myc 0.447 0.281 0.328 6.7e-43
UNIPROTKB|Q79FI9 1459 PPE34 "Uncharacterized protein 0.538 0.223 0.319 1.3e-38
UNIPROTKB|Q79FW4645 ppe12 "Uncharacterized PPE fam 0.733 0.688 0.282 2.2e-30
UNIPROTKB|Q28298 1534 RRBP1 "Ribosome-binding protei 0.849 0.335 0.271 2.5e-27
UNIPROTKB|Q47XC6816 CPS_3882 "Leucine rich repeat 0.796 0.590 0.293 3e-26
TIGR_CMR|CPS_3882816 CPS_3882 "leucine rich repeat 0.796 0.590 0.293 3e-26
UNIPROTKB|E2RAB2 1424 RRBP1 "Ribosome-binding protei 0.646 0.274 0.283 2.7e-24
UNIPROTKB|E2RL02 1424 RRBP1 "Ribosome-binding protei 0.646 0.274 0.283 2.7e-24
UNIPROTKB|Q6MWX9 PPE55 "PPE FAMILY PROTEIN" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
 Score = 380 (138.8 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
 Identities = 112/340 (32%), Positives = 162/340 (47%)

Query:   203 GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 262
             G  + G    G  ++  T L     G+ N+G    G+ NLG    G+ N      G   L
Sbjct:  2490 GFGNFGANMSGWWNQAHTALAGAGSGIANVGTLHSGVLNLGSGLSGIYNTSTLPLGTPAL 2549

Query:   263 GLTDRGLTNLGLTDRGL--TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 320
                  GL N+G    GL  +N+G     + N+GL + G  N+GL + G  NLG  + G  
Sbjct:  2550 V---SGLGNVGDHLSGLLASNVGQNPITIVNIGLANVGNGNVGLGNIGNLNLGAANIGDV 2606

Query:   321 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 380
             NLG  + G  NLG  + G  N+G  + G  N G  + GL   GL   G+ N+GL + G  
Sbjct:  2607 NLGFGNIGDVNLGFGNIGGGNVGFGNIGDANFGFGNSGLA-AGLA--GMGNIGLGNAGSG 2663

Query:   381 NLGLTDRGLTNLGLTDRGLTNLG--LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 438
             N+G  + GL N+G  + G  NLG  LT    + +G  + G  N+GL + G  N+G  + G
Sbjct:  2664 NVGWANMGLGNIGFGNTGTNNLGIGLTGDNQSGIGGLNSGTGNIGLFNSGTGNIGFFNSG 2723

Query:   439 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 498
               N GL + G  N G+ + G+ + GL + G  N G+ + G  N G  + G TN G  + G
Sbjct:  2724 TANFGLFNSGSYNTGIGNSGVASTGLVNAGGFNTGVANAGSYNTGSFNAGDTNTGGFNPG 2783

Query:   499 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 538
              TN G  + G  N G+ + G  N G    G  + G+  RG
Sbjct:  2784 STNTGWFNTGNANTGVANAGNVNTGALITGNFSNGILWRG 2823
GO:0052556 "positive regulation by symbiont of host immune response" evidence=IDA
UNIPROTKB|Q6MWY2 ppe54 "Uncharacterized PPE family protein PPE54" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q6MX48 PPE6 "PPE family protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|Q79FI9 PPE34 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|Q79FW4 ppe12 "Uncharacterized PPE family protein PPE12" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q28298 RRBP1 "Ribosome-binding protein 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q47XC6 CPS_3882 "Leucine rich repeat protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3882 CPS_3882 "leucine rich repeat protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAB2 RRBP1 "Ribosome-binding protein 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RL02 RRBP1 "Ribosome-binding protein 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7D7A1PPE40_MYCTUNo assigned EC number0.30990.65610.6455yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 605
COG5651490 PPE-repeat proteins [Cell motility and secretion] 99.19
COG5651490 PPE-repeat proteins [Cell motility and secretion] 96.53
PF0174429 GLTT: GLTT repeat (6 copies); InterPro: IPR008164 85.32
PF0174429 GLTT: GLTT repeat (6 copies); InterPro: IPR008164 84.02
>COG5651 PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information 
Probab=99.19  E-value=1e-09  Score=121.52  Aligned_cols=47  Identities=15%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             cCCChHHHH---HHHhhhcccCCCccccccccchhhhhcccccccccccc
Q psy9993         113 LGYSASEID---SELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGL  159 (605)
Q Consensus       113 ~G~~~~~i~---~~~~~~w~~dv~~m~gy~~~asaaAaaL~~~G~t~~GL  159 (605)
                      +|++.++|+   +.|+|||+||+++|..||..+++++++|.+|..+.+-.
T Consensus       126 fGqNt~aIaa~Ea~Y~~MW~qda~aM~~yy~~~saaa~~l~p~~~p~~~~  175 (490)
T COG5651         126 FGQNTPAIAATEAQYAEMWAQDAAAMYGYYAAASAAASALTPFNEPPPTT  175 (490)
T ss_pred             ccchhHHHhhhhcchHHHHHHHHhhhhhhhHHHHHHHHhcCCCCCCcccc
Confidence            899999985   56899999999999999999999999999998665543

>COG5651 PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>PF01744 GLTT: GLTT repeat (6 copies); InterPro: IPR008164 This short repeat of unknown function is found in multiple copies in several Caenorhabditis elegans proteins Back     alignment and domain information
>PF01744 GLTT: GLTT repeat (6 copies); InterPro: IPR008164 This short repeat of unknown function is found in multiple copies in several Caenorhabditis elegans proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
3g06_A622 The Salmonella Virulence Effector Ssph2 Functions A 2e-05
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 25/201 (12%)
Query: 13  GLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDR 72
           GL +L +    LT+L     GL  L +    LT+L +   GL  L ++D  L +L     
Sbjct: 102 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPS 161
Query: 73  VLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEP 132
            L  L   +  LT+L +   GL  L ++D  +           S   + SEL   W Y  
Sbjct: 162 ELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA----------SLPTLPSELYKLWAY-- 209
Query: 133 NGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 192
                        +  LT L     GL  L ++   LT+L +    L  L ++   LT+L
Sbjct: 210 -------------NNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 256
Query: 193 GLTDRGLTNLGLTDRGLTNLG 213
            +   GL +L +    LT L 
Sbjct: 257 PMLPSGLLSLSVYRNQLTRLP 277

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 5e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 4e-16
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-11
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 2e-10
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 5e-07
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-15
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-13
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 3e-13
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 6e-09
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-09
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-07
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 81/425 (19%), Positives = 133/425 (31%), Gaps = 45/425 (10%)

Query: 144 LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL- 202
             D  L   G    G     +     +   L +  L  + +TD  L  +  + +    L 
Sbjct: 79  FADFNLVPDGW--GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 203 -----GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDR 257
                G +  GL  +  T R L  L L +  + ++  +   L++   T   L +L ++  
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGHWLSHFPDTYTSLVSLNISC- 193

Query: 258 GLTNLGLTDRGLTNLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGLTNLG 313
                 ++   L  L      L +L L        L  L      L  LG          
Sbjct: 194 --LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251

Query: 314 LTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTNLGL-----TDRGLTNLGL 364
               GL+      + L  L          L  +      LT L L         L  L  
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311

Query: 365 TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD----RGLTNLGLTDRGLT 420
               L  L + D       + D GL  L  T + L  L +          N+ LT++GL 
Sbjct: 312 QCPKLQRLWVLDY------IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 421 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 480
           ++ +    L ++    R +TN  L         +T   L  +         L   D G  
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425

Query: 481 NLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNL-----GLTDRGLTNLGLTDRGLTN 531
            +    + L  L L    TD+    +G   + +  L     G +D G+ ++      L  
Sbjct: 426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 532 LGLTD 536
           L + D
Sbjct: 486 LEIRD 490
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query605
2g38_B198 PPE family protein; protein-protein complex, struc 97.35
>2g38_B PPE family protein; protein-protein complex, structural genomics, PSI, protein S initiative, TB structural genomics consortium, TBSGC; 2.20A {Mycobacterium tuberculosis} SCOP: a.25.4.2 Back     alignment and structure
Probab=97.35  E-value=2.3e-05  Score=76.66  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=40.6

Q ss_pred             cCCChHHHH---HHHhhhcccCCCccccccccchhhhhcccccccccc
Q psy9993         113 LGYSASEID---SELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDR  157 (605)
Q Consensus       113 ~G~~~~~i~---~~~~~~w~~dv~~m~gy~~~asaaAaaL~~~G~t~~  157 (605)
                      +|+|.+.|+   ++|++||+||.++|.+|+..+++++++|.+|..+.+
T Consensus       125 fGqNt~aIAa~EA~Y~~MWaQdaaaM~~Y~a~asaa~~~l~pf~~pp~  172 (198)
T 2g38_B          125 LGQFTAQIADLDQEYDDFWDEDGEVMRDYRLRVSDALSKLTPWKAPPP  172 (198)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999984   789999999999999999988999999999986643

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query605
d2g38b1173 PPE41 {Mycobacterium tuberculosis [TaxId: 1773]} 96.04
>d2g38b1 a.25.4.2 (B:2-174) PPE41 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: PE/PPE dimer-like
family: PPE
domain: PPE41
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.00039  Score=64.38  Aligned_cols=44  Identities=20%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             cCCChHHHH---HHHhhhcccCCCccccccccchhhhhccccccccc
Q psy9993         113 LGYSASEID---SELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTD  156 (605)
Q Consensus       113 ~G~~~~~i~---~~~~~~w~~dv~~m~gy~~~asaaAaaL~~~G~t~  156 (605)
                      +|++.+.|+   ++|++||+||+.+|..|+..++.+++.|++|..+.
T Consensus       124 ~G~nt~~IA~~Ea~y~~mw~qaa~aM~~Y~a~s~~a~~~l~~f~~PP  170 (173)
T d2g38b1         124 LGQFTAQIADLDQEYDDFWDEDGEVMRDYRLRVSDALSKLTPWKAPP  170 (173)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            899999986   58999999999999999999888889999887654