Conserved Domains in CDD Database
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value Target 67
hypothetical protein CLIBASIA_00140 [Candidatus Liberib
PRK07597 64
PRK07597, secE, preprotein translocase subunit SecE; Re
2e-07 TIGR00964 55
TIGR00964, secE_bact, preprotein translocase, SecE subu
1e-06 COG0690 73
COG0690, SecE, Preprotein translocase subunit SecE [Int
5e-06 PRK05740 92
PRK05740, secE, preprotein translocase subunit SecE; Re
0.001 pfam00584 56
pfam00584, SecE, SecE/Sec61-gamma subunits of protein t
1e-07
>gnl|CDD|181055 PRK07597, secE, preprotein translocase subunit SecE; Reviewed
Back Show alignment and domain information
Score = 49.5 bits (119), Expect = 2e-07
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 10 NFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
FFK V+ E KK+ WP+R E++ S IVV++ ++ ++FF ++D L+ +
Sbjct: 12 KFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL 64
>gnl|CDD|162136 TIGR00964, secE_bact, preprotein translocase, SecE subunit, bacterial
Back Show alignment and domain information
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
+ FFK+V+ E KK+ WPSR E++ IVVI+ + S+F +D G L+ I
Sbjct: 1 IFKFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLISLI 55
This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC. Length = 55
>gnl|CDD|31034 COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Back Show alignment and domain information
Score = 44.6 bits (105), Expect = 5e-06
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHF 61
NFFK+VR E KK+ WP+R E++ S ++V+++++ S+F +DQ IG L+ F
Sbjct: 19 KFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLVSF 73
>gnl|CDD|180229 PRK05740, secE, preprotein translocase subunit SecE; Reviewed
Back Show alignment and domain information
Score = 36.7 bits (86), Expect = 0.001
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILG 64
A F K+ R E +K+ WP+R E L + ++VI ++ + ++ +D + WL+ FI G
Sbjct: 35 AFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFITG 92
>gnl|CDD|144250 pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex
Back Show alignment and domain information
Score = 50.2 bits (121), Expect = 1e-07
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
++ FFK+V+ E KK+ WP+R E L + +VV+I + + ++F ++D GWL+ I
Sbjct: 2 IVKFFKEVKAELKKVVWPTRKETLKTTVVVLIFVLVMALFLWLVDLVFGWLVKLI 56
SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex. Length = 56
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability Target
67
hypothetical protein CLIBASIA_00140 [Candidatus Liberib
TIGR00964 61
secE_bact preprotein translocase, SecE subunit; InterPr
99.74 PRK05740 124
secE preprotein translocase subunit SecE; Reviewed
99.73 PRK07597 62
secE preprotein translocase subunit SecE; Reviewed
99.69 pfam00584 56
SecE SecE/Sec61-gamma subunits of protein translocation
99.69 COG0690 73
SecE Preprotein translocase subunit SecE [Intracellular
99.62 TIGR00327 61
secE_euk_arch protein translocase SEC61 complex gamma s
92.13
>TIGR00964 secE_bact preprotein translocase, SecE subunit; InterPro: IPR005807 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway
Back Show alignment and domain information
Probab=99.74 E-value=3.9e-18 Score=120.36 Aligned_cols=57 Identities=37% Similarity=0.775 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 9999999999998734898899999999999999999999999999999999----99971
Q gi|254780149|r 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLM----HFILG 64 (67)
Q Consensus 8 i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~----~~i~~ 64 (67)
T Consensus 1 ~~~F~~~~~~E~~KV~WP~r~e~~~~t~~Vi~~v~~~~~f~~~~D~~~~~l~t~~I~~~~~ 61 (61)
T TIGR00964 1 IFKFFKEVKAELRKVVWPSRKELITYTLVVIVFVIFFSLFLFGVDYLFGKLVTLVISLIFG 61 (61)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9168899998866174886899999999999999999999999999999999999987619
Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0009306 protein secretion, 0016021 integral to membrane.
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Back Show alignment and domain information
Probab=99.73 E-value=1.2e-17 Score=117.65 Aligned_cols=59 Identities=32% Similarity=0.694 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55999999999999873489889999999999999999999999999999999999971
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILG 64 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~ 64 (67)
T Consensus 66 k~~~~f~~e~~~E~rKVvWPtr~Et~~~T~iV~~~vii~~l~lw~~D~~l~~~v~~i~G 124 (124)
T PRK05740 66 KAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFITG 124 (124)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999957399869988799999999999999999999999999999739
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Back Show alignment and domain information
Probab=99.69 E-value=8.7e-17 Score=112.96 Aligned_cols=59 Identities=36% Similarity=0.711 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56559999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 4 NRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 4 ~~~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
T Consensus 4 ~~~~~~~f~~~v~~ElkkV~WPtr~e~~~~t~~Vi~~~~i~~~~i~~~D~~~~~l~~~i 62 (62)
T PRK07597 4 KMKKLIKFFKDVKAELKKVTWPTRKELVKSTIVVLVFVAFFSLFFYLVDLLISKLISLL 62 (62)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78899999999999964075989799886999999999999999999999999999769
>pfam00584 SecE SecE/Sec61-gamma subunits of protein translocation complex
Back Show alignment and domain information
Probab=99.69 E-value=7.7e-17 Score=113.24 Aligned_cols=56 Identities=38% Similarity=0.883 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
T Consensus 1 ~~~~f~~~v~~ElkkV~WPtr~e~~~~t~~Vi~~~~i~~~~~~~vD~~~~~~~~~i 56 (56)
T pfam00584 1 KIVKFFKEVKAELKKVVWPTRKETLKTTVVVLIFVLVMALFLWLVDLVFGWLVKLI 56 (56)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97889999999978365989799986999999999999999999999999999769
SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Back Show alignment and domain information
Probab=99.62 E-value=1.5e-15 Score=106.14 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65599999999999987348988999999999999999999999999999999999
Q gi|254780149|r 5 RLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMH 60 (67)
Q Consensus 5 ~~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~ 60 (67)
T Consensus 17 ~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i~ 72 (73)
T COG0690 17 GKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLVS 72 (73)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 17799999999999996518878999999999999999999999999999999860
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic; InterPro: IPR008158 This family is the protein translocase SEC61 complex gamma subunit of the archaeal and eukaryotic type
Back Show alignment and domain information
Probab=92.13 E-value=0.81 Score=25.36 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56559999999999998734898899---99999999999999999999999999999
Q gi|254780149|r 4 NRLAVLNFFKQVRDESKKIFWPSRSE---VLVSVIVVIIMLSISSVFFLVIDQSIGWL 58 (67)
Q Consensus 4 ~~~~i~~f~~ev~~ElkkV~WPt~~e---~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~ 58 (67)
T Consensus 2 ~~e~~~~f~~e~~~vL~~~kKP~~~EY~~v~Kv~~~g~~~vG~iGf~I~i~~~~l~G~ 59 (61)
T TIGR00327 2 KIEEVKEFIKESKRVLKVAKKPDKEEYLKVAKVTGIGIIIVGIIGFIIKIIAELLKGV 59 (61)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2357899999999999970699878899999999999999989999999999980311
It does not hit bacterial SecE proteins. Sec61 is required for protein translocation in the endoplasmic reticulum. The Sec61 complex (eukaryotes) or SecY complex (prokaryotes) forms a conserved heterotrimeric integral membrane protein complex and forms a protein-conducting channel that allows polypeptides to be transferred across (or integrated into) the endoplasmic reticulum (eukaryotes) or across the cytoplasmic membrane (prokaryotes) , . This complex is itself a part of a larger translocase heterotrimeric complex composed of alpha, beta and gamma subunits. The channel is a passive conduit for polypeptides. It therefore has to associate with other components that provide a driving force. The partner proteins in bacteria and eukaryotes differ. In bacteria, the translocase complex comprises 7 proteins , including a chaperone protein (SecB) an ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD) and SecF. The SecA ATPase interacts dynamically with the SecYEG integral membrane components to drive the transmembrane movement of newly synthesized preproteins . In yeast (and probably in all eukaryotes), the full translocase comprises another membrane protein subcomplex (the tetrameric Sec62/63p complex), and the lumenal protein BiP, a member of the Hsp70 family of ATPases. BiP promotes translocation by acting as a molecular ratchet, preventing the polypeptide chain from sliding back into the cytosol .; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane.
Homologous Domains in SCOP and MMDB Database
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value Target
67
hypothetical protein CLIBASIA_00140 [Candidatus Li
3bo0_B_ 65
(B:) Preprotein translocase SECE subunit; ribosome
7e-10 3din_D_ 65
(D:) Preprotein translocase subunit SECE; protein
4e-09 3dl8_C_ 65
(C:) SECE; RECA-type ATPase membrane protein trans
7e-09 2akh_Z_ 111
(Z:) Preprotein translocase SECE subunit; protein
6e-08 2zjs_E_ 60
(E:) Preprotein translocase SECE subunit; transloc
2e-07
>3bo0_B (B:) Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_BLength = 65
Back Hide alignment and structure
Score = 57.3 bits (139), Expect = 7e-10
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
A + F ++ R E +K+ WP+R + V + ++ +I I +I GI
Sbjct: 5 ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64
Query: 67 R 67
+
Sbjct: 65 K 65
>3din_D (D:) Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8}Length = 65
Back Show alignment and structure
Score = 55.0 bits (133), Expect = 4e-09
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
+ FF++V E+KKI WPSR E+L S VV+++L+++SV+F V+D ++ I
Sbjct: 4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKAL 62
>3dl8_C (C:) SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}Length = 65
Back Show alignment and structure
Score = 53.9 bits (130), Expect = 7e-09
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
+ F K VRDE K++ WPSR V+ + I VII V+ ++D + ++ FIL +
Sbjct: 4 LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLR 62
>2akh_Z (Z:) Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_ZLength = 111
Back Show alignment and structure
Score = 50.8 bits (122), Expect = 6e-08
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI 65
A + F ++ R E +K+ WP+R E L + ++V + ++ S+ +D + L+ FI G+
Sbjct: 51 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 109
>2zjs_E (E:) Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_ELength = 60
Back Show alignment and structure
Score = 49.3 bits (118), Expect = 2e-07
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 8 VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
++ +F++ R E ++ WP+R +V+ +++ V + D +L+ +
Sbjct: 5 LIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability Target 67
hypothetical protein CLIBASIA_00140 [Candidatus Liberib
3bo0_B_ 65
Preprotein translocase SECE subunit; ribosome-SECY
99.79 2akh_Z_ 111
Preprotein translocase SECE subunit; protein trans
99.77 3dl8_C_ 65
SECE; RECA-type ATPase membrane protein translocat
99.76 3din_D_ 65
Preprotein translocase subunit SECE; protein trans
99.71 2zjs_E_ 60
Preprotein translocase SECE subunit; translocon, S
99.65 2ww9_B_ 80
Protein transport protein SSS1; ribonucleoprotein,
91.58 1rh5_B_ 74
Preprotein translocase SECE subunit; protein trans
91.25 2wwb_B_ 68
SEC61gamma, protein transport protein SEC61 subuni
90.97
>3bo0_B (B:) Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B
Back Hide alignment and structure
Probab=99.79 E-value=4.3e-20 Score=130.76 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5655999999999999873489889999999999999999999999999999999999971179
Q gi|254780149|r 4 NRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR 67 (67)
Q Consensus 4 ~~~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr 67 (67)
...++.+|++|+++|||||+||||+|+.++|.+|+++++++++|+|++|.+++++++.++|+||
T Consensus 2 k~~~~~~f~~ev~~ElkKV~WPtr~E~~~~T~vVli~~ii~~~~l~~~D~~~~~~~~~i~gl~k 65 (65)
T 3bo0_B 2 KGKATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8487999999999998451089808988799999999999999999999999999999975339
>2akh_Z (Z:) Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z
Back Show alignment and structure
Probab=99.77 E-value=1.1e-18 Score=123.12 Aligned_cols=61 Identities=28% Similarity=0.566 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5599999999999987348988999999999999999999999999999999999997117
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg 66 (67)
.++.+|++|++.|+|||+||||||+.++|.+|+++++++++++|++|.+++++++.++|+.
T Consensus 50 ~~~~~f~~e~~~ElkKVvWPtr~Et~~~T~iVi~~vii~al~lw~~D~~~~~~i~~ilglr 110 (111)
T 2akh_Z 50 KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLR 110 (111)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4899999999999784789997999879999999999999999999999999999984386
>3dl8_C (C:) SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Back Show alignment and structure
Probab=99.76 E-value=3.1e-19 Score=126.03 Aligned_cols=62 Identities=34% Similarity=0.594 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55999999999999873489889999999999999999999999999999999999971179
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIGR 67 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lgr 67 (67)
.++.+|++|+++|||||+||||+|+.++|.+|+++++++++++|++|++++++++++++++.
T Consensus 2 ~~~~~f~~ev~~ElkKV~WPtr~e~~~~T~vVi~~~~i~~~~i~~~D~~~~~~~~~i~~~~~ 63 (65)
T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLRG 63 (65)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 37899999999997537797979987399999999999999999999999999999994424
>3din_D (D:) Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Back Show alignment and structure
Probab=99.71 E-value=6.1e-19 Score=124.42 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5599999999999987348988999999999999999999999999999999999997117
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i~~lg 66 (67)
.++.+|++|+++|+|||+||||+|+.++|.+|+++++++++++|++|++++++++.+++++
T Consensus 2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~v~i~~~~i~~~D~~~~~~~~~i~~~~ 62 (65)
T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKAL 62 (65)
T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3789999999999753659897998638897778999999999999999999999998466
>2zjs_E (E:) Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Back Show alignment and structure
Probab=99.65 E-value=2.5e-18 Score=121.02 Aligned_cols=57 Identities=18% Similarity=0.478 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 559999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
.++.+|++|+++|+|||+||||+|+.++|.+|+++++++++|+|++|.+++++++++
T Consensus 3 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi~~~~i~a~~l~~~D~~~~~~i~~i 59 (60)
T 2zjs_E 3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999974277929799873999999999999999999999999999985
>2ww9_B (B:) Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Back Show alignment and structure
Probab=91.58 E-value=1 Score=24.46 Aligned_cols=50 Identities=18% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55999999999999873489889999999999999999999999999999
Q gi|254780149|r 6 LAVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSI 55 (67)
Q Consensus 6 ~~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~ 55 (67)
..+.+|++|.+.-++|.+=|+|+|-.+...++-+--+++|++=+.+..++
T Consensus 23 ~~~~eF~kd~~r~lk~c~KP~~kEf~~ia~a~~iGf~imG~IGf~IkLI~ 72 (80)
T 2ww9_B 23 EAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98999999989999996499889999999999998999999999999731
>1rh5_B (B:) Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii}
Back Show alignment and structure
Probab=91.25 E-value=1.1 Score=24.27 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999998734898899999999999999999999999999999999999
Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62 (67)
Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D~~~~~~~~~i 62 (67)
.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++.+=+.+..++.-+-+.+
T Consensus 11 ~~~eF~~~~~r~lk~~~KPd~~Ef~~iak~~~iGf~imG~IGf~Ikli~ipi~~ii 66 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 66 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999816998999999999999999999999999999998732556
>2wwb_B (B:) SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Back Show alignment and structure
Probab=90.97 E-value=0.78 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999999999873489889999999999999999999999999
Q gi|254780149|r 7 AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVID 52 (67)
Q Consensus 7 ~i~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~~~~i~~~D 52 (67)
.+.+|++|.+.-+||.+=|+|+|-.+...++-+-.++++++=+.+.
T Consensus 10 ~~~eF~kd~~r~vk~c~KP~~kEf~kia~a~~iGf~imG~iGf~ik 55 (68)
T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999989999992499989999999999984999999999988