254780199
outer membrane lipoprotein
| GeneID in NCBI database: | 8209180 | Locus tag: | CLIBASIA_00420 |
| Protein GI in NCBI database: | 254780199 | Protein Accession: | YP_003064612.1 |
| Gene range: | +(89418, 89900) | Protein Length: | 160aa |
| Gene description: | outer membrane lipoprotein | ||
| COG prediction: | none | ||
| KEGG prediction: | outer membrane lipoprotein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 160 | outer membrane lipoprotein [Candidatus Liberibacter asi | |||
| 315122626 | 157 | outer membrane lipoprotein [Candidatus Liberibacter sol | 1 | 1e-40 | |
| 222149721 | 130 | outer membrane lipoprotein [Agrobacterium vitis S4] Len | 1 | 3e-13 | |
| 325063187 | 124 | Outer membrane lipoprotein omp10 [Agrobacterium sp. H13 | 1 | 8e-12 | |
| 241206291 | 122 | outer membrane lipoprotein [Rhizobium leguminosarum bv. | 1 | 6e-11 | |
| 116253811 | 122 | hypothetical protein RL4074 [Rhizobium leguminosarum bv | 1 | 6e-11 | |
| 209550877 | 122 | outer membrane lipoprotein [Rhizobium leguminosarum bv. | 1 | 6e-11 | |
| 86359145 | 122 | outer membrane lipoprotein [Rhizobium etli CFN 42] Leng | 1 | 2e-10 | |
| 153011580 | 126 | lipoprotein Omp10 [Ochrobactrum anthropi ATCC 49188] Le | 1 | 4e-10 | |
| 15891181 | 124 | outer membrane lipoprotein [Agrobacterium tumefaciens s | 1 | 5e-10 | |
| 239834496 | 139 | Hypothetical protein, conserved [Ochrobactrum intermedi | 1 | 5e-10 |
| >gi|315122626|ref|YP_004063115.1| outer membrane lipoprotein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 157 | Back alignment and organism information |
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Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 110/145 (75%), Gaps = 10/145 (6%)
Query: 21 VVSCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSY 80
+ SC + +V D+ LLP I GYWEDDNGILS FQKDG FKTISTDGSSS+LATG Y
Sbjct: 18 IGSCGVIPMV-DNQILLPS---IVGYWEDDNGILSQFQKDGTFKTISTDGSSSILATGFY 73
Query: 81 HVKINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLAKDQKQFYLRRTHLTELPSSKPQD 140
K NQ ++IKLTSLIR+TS KIQC+F++ +KL C+ +++KQFYLRRTHLTE+P +KPQ+
Sbjct: 74 SEKANQGIDIKLTSLIRSTSEKIQCKFVEYSKLTCITQNKKQFYLRRTHLTEVPVTKPQN 133
Query: 141 D-----VAEIPEDPTTPSTSIIFYK 160
D AE P +P PS S+I+YK
Sbjct: 134 DNVVVTSAEDPNNP-NPSPSMIYYK 157
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222149721|ref|YP_002550678.1| outer membrane lipoprotein [Agrobacterium vitis S4] Length = 130 | Back alignment and organism information |
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| >gi|325063187|gb|ADY66877.1| Outer membrane lipoprotein omp10 [Agrobacterium sp. H13-3] Length = 124 | Back alignment and organism information |
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| >gi|241206291|ref|YP_002977387.1| outer membrane lipoprotein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 122 | Back alignment and organism information |
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| >gi|116253811|ref|YP_769649.1| hypothetical protein RL4074 [Rhizobium leguminosarum bv. viciae 3841] Length = 122 | Back alignment and organism information |
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| >gi|209550877|ref|YP_002282794.1| outer membrane lipoprotein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 122 | Back alignment and organism information |
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| >gi|86359145|ref|YP_471037.1| outer membrane lipoprotein [Rhizobium etli CFN 42] Length = 122 | Back alignment and organism information |
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| >gi|153011580|ref|YP_001372794.1| lipoprotein Omp10 [Ochrobactrum anthropi ATCC 49188] Length = 126 | Back alignment and organism information |
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| >gi|15891181|ref|NP_356853.1| outer membrane lipoprotein [Agrobacterium tumefaciens str. C58] Length = 124 | Back alignment and organism information |
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| >gi|239834496|ref|ZP_04682824.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 139 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 160 | outer membrane lipoprotein [Candidatus Liberibacter asi | ||
| TIGR03066 | 111 | Gem_osc_para_1 Gemmata obscuriglobus paralogous family | 91.98 |
| >TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066 | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00