Conserved Domains in CDD Database
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value Target 98
hypothetical protein CLIBASIA_00580 [Candidatus Liberib
PRK01310 104
PRK01310, PRK01310, hypothetical protein; Validated
5e-13 COG1872 102
COG1872, COG1872, Uncharacterized conserved protein [Fu
7e-09 PRK00647 96
PRK00647, PRK00647, hypothetical protein; Validated
6e-07 PRK01530 105
PRK01530, PRK01530, hypothetical protein; Reviewed
4e-05 PRK05090 95
PRK05090, PRK05090, hypothetical protein; Validated
0.004 pfam02594 78
pfam02594, DUF167, Uncharacterized ACR, YggU family COG
4e-10
>gnl|CDD|167208 PRK01310, PRK01310, hypothetical protein; Validated
Back Show alignment and domain information
Score = 68.1 bits (167), Expect = 5e-13
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSS 63
+ VRL P + I +E D +K++V A P+ G+AN+A++ +LAK L + KSS
Sbjct: 14 LAVRLTPRGGRDAIDGIETLADGRA--VLKVRVRAVPEGGEANRALIELLAKALGVPKSS 71
Query: 64 LRMLSKQSSPLKIIYIDKDCKEITELLQ 91
+R+LS +S LK + ID D +++ E L+
Sbjct: 72 VRLLSGATSRLKQLRIDGDPEDLGEALR 99
>gnl|CDD|32056 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Score = 54.2 bits (130), Expect = 7e-09
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
VR+ P AK+ I L+ +K+++TA P GKAN+ ++ LAK + KSS+
Sbjct: 17 VRVKPKAKRDSIVGLDE-----WRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVE 71
Query: 66 MLSKQSSPLKIIYIDKDCKEI 86
++S ++S LK + I +
Sbjct: 72 IVSGETSRLKTVLIKNIDPDQ 92
>gnl|CDD|100624 PRK00647, PRK00647, hypothetical protein; Validated
Back Show alignment and domain information
Score = 47.9 bits (114), Expect = 6e-07
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
V++ P A+++ I E I +K++VT P+KGKAN A++A+LAK L+L K +
Sbjct: 10 VKVTPKARENKIVGFE------GGI-LKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVT 62
Query: 66 MLSKQSSPLKIIYIDKDCKEI 86
+++ ++S K + + + K I
Sbjct: 63 LIAGETSRKKKVLLPRSIKAI 83
>gnl|CDD|134567 PRK01530, PRK01530, hypothetical protein; Reviewed
Back Show alignment and domain information
Score = 42.1 bits (99), Expect = 4e-05
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 10 PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69
PNAK++ I++ I + ++K+ + A P++GKAN+ ++ LAK+ LS+S++ ++
Sbjct: 22 PNAKQNLISNFVIINNIP---YLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKG 78
Query: 70 QSSPLKIIYIDKDCKEITELLQN 92
+ LK I I ++ L+ N
Sbjct: 79 HTHSLKTILIKNINEDYLNLIIN 101
>gnl|CDD|179931 PRK05090, PRK05090, hypothetical protein; Validated
Back Show alignment and domain information
Score = 35.3 bits (82), Expect = 0.004
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 23 PKDTSDTI---H---MKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKI 76
PK + D I H +K+ +TA P G+AN +L LAK+ ++KS + + + K
Sbjct: 19 PKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQ 78
Query: 77 IYIDKDCK---EITELL 90
+ I + EI LL
Sbjct: 79 VRIINPQQIPPEIAALL 95
>gnl|CDD|111487 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872
Back Show alignment and domain information
Score = 58.4 bits (142), Expect = 4e-10
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
VR+ PNAKK+ I +E + +K+++TA P GKAN ++ LAK L + KS +
Sbjct: 9 VRVKPNAKKNSIVGVE------EWGELKVRITAPPVDGKANAELIKFLAKTLGVPKSDVE 62
Query: 66 MLSKQSSPLKIIYID 80
++S ++S K++ I+
Sbjct: 63 IVSGETSRSKVLLIE 77
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability Target
98
hypothetical protein CLIBASIA_00580 [Candidatus Liberib
PRK01310 106
hypothetical protein; Validated
99.95 PRK00647 96
hypothetical protein; Validated
99.93 PRK01530 105
hypothetical protein; Reviewed
99.92 COG1872 102
Uncharacterized conserved protein [Function unknown]
99.91 PRK04021 92
hypothetical protein; Reviewed
99.91 PRK05090 95
hypothetical protein; Validated
99.91 pfam02594 78
DUF167 Uncharacterized ACR, YggU family COG1872.
99.9 TIGR00251 91
TIGR00251 conserved hypothetical protein TIGR00251; Int
99.83 KOG3276 125
consensus
99.71
>PRK01310 hypothetical protein; Validated
Back Show alignment and domain information
Probab=99.95 E-value=6.1e-28 Score=187.54 Aligned_cols=94 Identities=34% Similarity=0.474 Sum_probs=88.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 11 ~~l~Vrv~P~Asr~~i~G~~~d~dG~--~~LkvrV~ApP~dGkAN~al~~~LAk~lgvpks~v~i~~G~tSR~K~i~I~G 88 (106)
T PRK01310 11 LRVAVRVTPRGGRDAIDGIETLADGR--SVLKVRVRAIAEGGEANRAVTELLAKALGVPKSSVRVLSGATSRLKQVAIDG 88 (106)
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCC--EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCEEEEEEC
T ss_conf 89999985488756220030277776--0589999649987758999999999985998333899707877845999967
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9899999997523015
Q gi|254780231|r 82 DCKEITELLQNNDSLT 97 (98)
Q Consensus 82 ~~~~i~~~L~~~~s~t 97 (98)
T Consensus 89 d~~~l~~~L~~l~~~~ 104 (106)
T PRK01310 89 DPEDLGEALRALTAAK 104 (106)
T ss_pred CHHHHHHHHHHHHCCC
T ss_conf 9999999999974469
>PRK00647 hypothetical protein; Validated
Back Show alignment and domain information
Probab=99.93 E-value=1.6e-25 Score=173.15 Aligned_cols=88 Identities=32% Similarity=0.468 Sum_probs=80.0
Q ss_pred EEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECCC
Q ss_conf 59999941866530231014566677767999996387679788999999999829984447998355778069998299
Q gi|254780231|r 3 NVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDKD 82 (98)
Q Consensus 3 ~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~~ 82 (98)
T Consensus 7 il~V~VqP~A~r~~i~G~~-------~~~LkV~vtApPvdGKAN~ali~~LAk~l~vpks~I~Ii~G~tSR~K~I~I~~~ 79 (96)
T PRK00647 7 ILEVKVTPKARENKIVGFE-------GGILKVRVTEVPEKGKANDAVIALLAKALSLPKRDVTLIAGETSRKKKVLLPRS 79 (96)
T ss_pred EEEEEEECCCCCCCEECCC-------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCEEEECCCC
T ss_conf 9999986298736250002-------998999995599887189999999999969983447996067757338977996
Q ss_pred -HHHHHHHHHHHHHCC
Q ss_conf -899999997523015
Q gi|254780231|r 83 -CKEITELLQNNDSLT 97 (98)
Q Consensus 83 -~~~i~~~L~~~~s~t 97 (98)
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (96)
T PRK00647 80 IKAIIFEQFPDVSSST 95 (96)
T ss_pred CHHHHHHHCCCCCCCC
T ss_conf 3358887597644466
>PRK01530 hypothetical protein; Reviewed
Back Show alignment and domain information
Probab=99.92 E-value=1.5e-24 Score=167.43 Aligned_cols=86 Identities=28% Similarity=0.464 Sum_probs=77.0
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 14 vll~vkVkP~Ak~N~I~G~~~~~~---~~~LKv~VtApPedGKAN~ali~~LAk~l~l~kS~i~Iv~G~tsR~K~i~I~n 90 (105)
T PRK01530 14 ALLNLKVKPNAKQNLISNFVIINN---IPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILIKN 90 (105)
T ss_pred EEEEEEEECCCCCCCCCCEEECCC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCEEEEEEC
T ss_conf 999999703867031133661179---87389999749988807899999999995998222799507777722899915
Q ss_pred CHHHHHHHH
Q ss_conf 989999999
Q gi|254780231|r 82 DCKEITELL 90 (98)
Q Consensus 82 ~~~~i~~~L 90 (98)
T Consensus 91 i~~~~l~~i 99 (105)
T PRK01530 91 INEDYLNLI 99 (105)
T ss_pred CCHHHHHHH
T ss_conf 798999999
>COG1872 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=99.91 E-value=2.8e-24 Score=165.76 Aligned_cols=87 Identities=33% Similarity=0.516 Sum_probs=79.8
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 13 ~~l~V~V~P~a~~~~i~g~~-----~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K~v~i~~ 87 (102)
T COG1872 13 VLLRVRVKPKAKRDSIVGLD-----EWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLKTVLIKN 87 (102)
T ss_pred EEEEEEECCCCCCCCCCCEE-----CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECC
T ss_conf 69999977788657533250-----6755599998469877613699999999995998541799846755530799548
Q ss_pred -CHHHHHHHHHHH
Q ss_conf -989999999752
Q gi|254780231|r 82 -DCKEITELLQNN 93 (98)
Q Consensus 82 -~~~~i~~~L~~~ 93 (98)
T Consensus 88 i~~d~~~~~~~~~ 100 (102)
T COG1872 88 IDPDQLPERLAAL 100 (102)
T ss_pred CCHHHHHHHHHHH
T ss_conf 8989999998864
>PRK04021 hypothetical protein; Reviewed
Back Show alignment and domain information
Probab=99.91 E-value=3.4e-24 Score=165.22 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=76.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 9 v~l~v~vqP~A~~~~i~G~~-----~~~~~Lkv~l~ApPv~GkAN~ali~flak~lg---s~V~i~~G~tSR~K~v~i~g 80 (92)
T PRK04021 9 VIISVIVQPNAKENKIEGVD-----EWRGRIKVNIKAPPVKGKANKELIKFFSKLLG---AEVEIIRGETSREKDLLVKG 80 (92)
T ss_pred EEEEEEEECCCCCCEEECCC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCEEEEEC
T ss_conf 99999981099855460313-----77885899987799877689999999999859---97899705777853899906
Q ss_pred -CHHHHHHHHH
Q ss_conf -9899999997
Q gi|254780231|r 82 -DCKEITELLQ 91 (98)
Q Consensus 82 -~~~~i~~~L~ 91 (98)
T Consensus 81 is~e~v~~~L~ 91 (92)
T PRK04021 81 ISLEEVKKKLK 91 (92)
T ss_pred CCHHHHHHHHC
T ss_conf 99999999865
>PRK05090 hypothetical protein; Validated
Back Show alignment and domain information
Probab=99.91 E-value=2.7e-24 Score=165.79 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=69.8
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 11 ~~l~V~V~P~A~r~~i~g~~-------~~~Lkv~v~ApPvdGkAN~ali~~LA~~l~vpks~V~i~~G~tsR~K~i~I~~ 83 (95)
T PRK05090 11 LVLRLYIQPKASRDQIVGLH-------GDELKVAITAPPVDGQANAHLVKFLAKQFKVAKSQVVIEKGELGRHKQVRIIN 83 (95)
T ss_pred EEEEEEEEECCCCCEECCCC-------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCEEEEEEC
T ss_conf 99999995288804580103-------99899999659978728999999999985997565899525876843999838
Q ss_pred C
Q ss_conf 9
Q gi|254780231|r 82 D 82 (98)
Q Consensus 82 ~ 82 (98)
T Consensus 84 p 84 (95)
T PRK05090 84 P 84 (95)
T ss_pred C
T ss_conf 1
>pfam02594 DUF167 Uncharacterized ACR, YggU family COG1872
Back Show alignment and domain information
Probab=99.90 E-value=2.4e-23 Score=160.17 Aligned_cols=74 Identities=36% Similarity=0.547 Sum_probs=69.1
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 5 v~i~i~V~P~a~~~~i~g~~~------~~~l~V~v~a~p~~GkAN~ali~~la~~l~v~ks~I~Iv~G~~sr~K~i~I~g 78 (78)
T pfam02594 5 VLLRVRVKPNAKKNSIVGVEE------WGELKVRITAPPVDGKANAELIKFLAKTLGVPKSDVEIVSGETSRSKVLLIEG 78 (78)
T ss_pred EEEEEEEEECCCCCEECCCCC------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEC
T ss_conf 999999974886251840269------84799999649977748999999999985997000899865877862899819
>TIGR00251 TIGR00251 conserved hypothetical protein TIGR00251; InterPro: IPR005228 This family of conserved hypothetical proteins has no known function
Back Show alignment and domain information
Probab=99.83 E-value=7e-21 Score=145.51 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=74.0
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 8 ll~~~~v~p~a~k~~i~g~~-----eWR~~v~v~I~aPp~~GkAN~el~K~f~~~F~~aks~VeivsG~~~R~K~iki~~ 82 (91)
T TIGR00251 8 LLIRIEVQPKASKDSIVGYN-----EWRKRVEVKIKAPPKEGKANRELIKFFKEIFGKAKSDVEIVSGELSRQKTIKIKN 82 (91)
T ss_pred EEEEEEECCCCCCCCCCCCC-----CCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECC
T ss_conf 58998866777865147824-----5311467877077988840158898888644734330788606228831687046
Q ss_pred CHHHH
Q ss_conf 98999
Q gi|254780231|r 82 DCKEI 86 (98)
Q Consensus 82 ~~~~i 86 (98)
T Consensus 83 ~~~~~ 87 (91)
T TIGR00251 83 IKRDI 87 (91)
T ss_pred CCCCC
T ss_conf 47211
>KOG3276 consensus
Back Show alignment and domain information
Probab=99.71 E-value=3.7e-17 Score=123.34 Aligned_cols=86 Identities=28% Similarity=0.427 Sum_probs=76.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
T Consensus 35 V~i~IhakpgaK~s~It~v~-------~e~V~V~IaApp~eGeANaeLl~ylskvLgLRksdv~ldkG~kSrsKvv~i~~ 107 (125)
T KOG3276 35 VQIAIHAKPGAKQSAITDVG-------DEAVGVAIAAPPREGEANAELLEYLSKVLGLRKSDVTLDKGWKSRSKVVVIED 107 (125)
T ss_pred EEEEEEECCCCCCCCEEECC-------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEC
T ss_conf 89999846874312255126-------43104577359766533699999999986012431365036565432899962
Q ss_pred --CHHHHHHHHHHHH
Q ss_conf --9899999997523
Q gi|254780231|r 82 --DCKEITELLQNND 94 (98)
Q Consensus 82 --~~~~i~~~L~~~~ 94 (98)
T Consensus 108 ~~~~~e~i~~l~ak~ 122 (125)
T KOG3276 108 LSATQEYIELLEAKV 122 (125)
T ss_pred CCCCHHHHHHHHCCC
T ss_conf 744099999974458
Homologous Domains in SCOP and MMDB Database
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value Target 98
hypothetical protein CLIBASIA_00580 [Candidatus Liberib
d1yh5a1 100
d.206.1.1 (A:1-100) Hypothetical protein YggU {Escheric
1e-11 d1jrma_ 104
d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Me
1e-10
>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]
Score = 62.0 bits (151), Expect = 1e-11
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
+ + P A + I L +K+ +TA P G+AN ++ L K+ ++KS +
Sbjct: 19 LYIQPKASRDSIVGLH-------GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVV 71
Query: 66 MLSKQSSPLKIIYIDKDCK---EITELL 90
+ + K I I + E+ L+
Sbjct: 72 IEKGELGRHKQIKIINPQQIPPEVAALI 99
>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 58.6 bits (142), Expect = 1e-10
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
+ + P + K GI S + +++K+ + PQKGKAN+ ++ ++ +
Sbjct: 18 IEVSPASGKFGIPSYNEWRK-----RIEVKIHSPPQKGKANREIIKEFSETF---GRDVE 69
Query: 66 MLSKQSSPLKIIYIDKDCKE-ITELLQ 91
++S Q S K I I ++ +L+
Sbjct: 70 IVSGQKSRQKTIRIQGMGRDLFLKLVS 96
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability Target 98
hypothetical protein CLIBASIA_00580 [Candidatus Liberib
d1yh5a1 100
Hypothetical protein YggU {Escherichia coli, o157 [TaxI
99.88 d1jrma_ 104
Hypothetical protein MTH637 {Archaeon Methanobacterium
99.88
>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]
Probab=99.88 E-value=1.8e-23 Score=158.26 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=69.4
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|+ ++++|+|+|+|||+||+||+||++|||++|++|||+|+|++|++||+|+++|.+
T Consensus 15 v~i~v~V~P~ak~~~i~~~-------~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~K~i~I~~ 87 (100)
T d1yh5a1 15 LVLRLYIQPKASRDSIVGL-------HGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIIN 87 (100)
T ss_dssp EEEEEECCBSCSSCCCCCC-------CSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSEEEEEEES
T ss_pred EEEEEEEEECCCCCCCCCC-------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEC
T ss_conf 8999999759751432551-------199899999669977717899999999995997100899864777850899957
Q ss_pred C
Q ss_conf 9
Q gi|254780231|r 82 D 82 (98)
Q Consensus 82 ~ 82 (98)
.
T Consensus 88 ~ 88 (100)
T d1yh5a1 88 P 88 (100)
T ss_dssp C
T ss_pred C
T ss_conf 5
>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=1.8e-23 Score=158.22 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=77.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|++ .|+++|+|+|+|||+||+||+||++|||++|+ |+|+|++|++||+|+++|.|
T Consensus 14 v~i~v~V~P~A~~~~i~g~~-----~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~K~i~I~g 85 (104)
T d1jrma_ 14 LLVNIEVSPASGKFGIPSYN-----EWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKTIRIQG 85 (104)
T ss_dssp EEEEEESCCCSSSCCCCCCC-----TTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEEEEEES
T ss_pred EEEEEEEEECCCCCEEEEEC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEEC
T ss_conf 99999986099854464160-----77998999995699777689999999999868---98899846877850899908
Q ss_pred -CHHHHHHHHHHHHH
Q ss_conf -98999999975230
Q gi|254780231|r 82 -DCKEITELLQNNDS 95 (98)
Q Consensus 82 -~~~~i~~~L~~~~s 95 (98)
+.+++.++|+...-
T Consensus 86 ~~~~~~~~~L~~~lg 100 (104)
T d1jrma_ 86 MGRDLFLKLVSEKFG 100 (104)
T ss_dssp CCHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 999999999999866
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value Target
98
hypothetical protein CLIBASIA_00580 [Candidatus Li
1n91_A_ 108
(A:) ORF, hypothetical protein; alpha+beta, northe
8e-11 1jrm_A_ 104
(A:) MTH0637, conserved hypothetical protein MTH63
2e-09
>1n91_A (A:) ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, protein structure initiative, NESG; NMR {Escherichia coli O157}Length = 108
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Score = 60.5 bits (147), Expect = 8e-11
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
+ + P A + I L +K+ +TA P G+AN ++ L K+ ++KS +
Sbjct: 19 LYIQPKASRDSIVGLHGD-------EVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVV 71
Query: 66 MLSKQSSPLKIIYIDKDCKEITELLQ 91
+ + K I I + E+
Sbjct: 72 IEKGELGRHKQIKIINPQQIPPEVAA 97
>1jrm_A (A:) MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus}Length = 104
Back Show alignment and structure
Score = 55.9 bits (135), Expect = 2e-09
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
+ + P + K GI S + +++K+ + PQKGKAN+ ++ ++ +
Sbjct: 18 IEVSPASGKFGIPSYNEWRK-----RIEVKIHSPPQKGKANREIIKEFSETF---GRDVE 69
Query: 66 MLSKQSSPLKIIYIDKDCKE-----ITELLQN 92
++S Q S K I I ++ ++E
Sbjct: 70 IVSGQKSRQKTIRIQGMGRDLFLKLVSEKFGL 101
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability Target 98
hypothetical protein CLIBASIA_00580 [Candidatus Liberib
1n91_A_ 108
ORF, hypothetical protein; alpha+beta, northeast s
99.89 1jrm_A_ 104
MTH0637, conserved hypothetical protein MTH637; al
99.87
>1n91_A (A:) ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, protein structure initiative, NESG; NMR {Escherichia coli O157}
Back Hide alignment and structure
Probab=99.89 E-value=1e-23 Score=161.97 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=76.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|++ ++.|+|+|+|||+||+||++|++|||++|+||+|+|+|++|++||.|+++|+|
T Consensus 15 ~~i~i~v~P~a~~~~i~~~~-------~~~l~v~v~app~~GkAN~~li~~Lak~l~v~ks~I~i~~G~tsr~K~i~i~g 87 (108)
T 1n91_A 15 LVLRLYIQPKASRDSIVGLH-------GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIIN 87 (108)
T ss_dssp EEEEEEEECSSSSCEEEEEC-------SSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEEEEES
T ss_pred EEEEEEEEECCCCCCCCCEE-------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCEEEEEC
T ss_conf 99999998598635104450-------88799999669978707899999999995997000899863777852899957
Q ss_pred C---HHHHHHHHHHH
Q ss_conf 9---89999999752
Q gi|254780231|r 82 D---CKEITELLQNN 93 (98)
Q Consensus 82 ~---~~~i~~~L~~~ 93 (98)
. .+++.+.|+..
T Consensus 88 ~~~~~~~l~~~L~~~ 102 (108)
T 1n91_A 88 PQQIPPEVAALINLE 102 (108)
T ss_dssp CCCCCHHHHCCCCCC
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 553879999998644
>1jrm_A (A:) MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus}
Back Show alignment and structure
Probab=99.87 E-value=1.3e-22 Score=155.48 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=77.2
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|++ .|++.|+|+|+|||+|||||++|++|||++|+ |+|+|++|++||+|+++|++
T Consensus 14 ~~i~i~V~P~a~~~~i~g~~-----~~~~~l~v~v~app~~GkAN~ali~~La~~lk---s~i~iv~G~tsr~K~i~I~~ 85 (104)
T 1jrm_A 14 LLVNIEVSPASGKFGIPSYN-----EWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKTIRIQG 85 (104)
T ss_dssp EEEEEESCCCSSSCCCCCCC-----TTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEEEEEES
T ss_pred EEEEEEEEECCCCCEEEEEC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCEEEEEC
T ss_conf 99999997489754363051-----77988999995699887689999999999858---99899846877860899907
Q ss_pred -CHHHHHHHHHHH
Q ss_conf -989999999752
Q gi|254780231|r 82 -DCKEITELLQNN 93 (98)
Q Consensus 82 -~~~~i~~~L~~~ 93 (98)
+.+++.++|...
T Consensus 86 ~~~~~l~~~l~~~ 98 (104)
T 1jrm_A 86 MGRDLFLKLVSEK 98 (104)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999998