254780279
dihydrodipicolinate reductase
| GeneID in NCBI database: | 8209261 | Locus tag: | CLIBASIA_00820 |
| Protein GI in NCBI database: | 254780279 | Protein Accession: | YP_003064692.1 |
| Gene range: | -(165572, 166414) | Protein Length: | 280aa |
| Gene description: | dihydrodipicolinate reductase | ||
| COG prediction: | [E] Dihydrodipicolinate reductase | ||
| KEGG prediction: | dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] | ||
| SEED prediction: | Dihydrodipicolinate reductase (EC 1.3.1.26) | ||
| Pathway involved in KEGG: | Lysine biosynthesis [PATH:las00300] | ||
| Subsystem involved in SEED: | Lysine Biosynthesis DAP Pathway | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 280 | dihydrodipicolinate reductase [Candidatus Liberibacter | |||
| 315122839 | 276 | dihydrodipicolinate reductase [Candidatus Liberibacter | 1 | 1e-117 | |
| 150398560 | 272 | dihydrodipicolinate reductase [Sinorhizobium medicae WS | 1 | 8e-79 | |
| 227823992 | 272 | dihydrodipicolinate reductase [Sinorhizobium fredii NGR | 1 | 5e-78 | |
| 15963914 | 272 | dihydrodipicolinate reductase [Sinorhizobium meliloti 1 | 1 | 1e-77 | |
| 222084416 | 274 | dihydrodipicolinate reductase protein [Agrobacterium ra | 1 | 8e-76 | |
| 86355830 | 274 | dihydrodipicolinate reductase [Rhizobium etli CFN 42] L | 1 | 9e-74 | |
| 218515892 | 274 | dihydrodipicolinate reductase [Rhizobium etli 8C-3] Len | 1 | 2e-72 | |
| 209551698 | 274 | dihydrodipicolinate reductase [Rhizobium leguminosarum | 1 | 4e-72 | |
| 116249947 | 274 | dihydrodipicolinate reductase [Rhizobium leguminosarum | 1 | 4e-72 | |
| 327192337 | 274 | dihydrodipicolinate reductase [Rhizobium etli CNPAF512] | 1 | 6e-72 |
| >gi|315122839|ref|YP_004063328.1| dihydrodipicolinate reductase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 276 | Back alignment and organism information |
|---|
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/277 (74%), Positives = 241/277 (87%), Gaps = 1/277 (0%)
Query: 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK 60
M +SPMRI +LGGGRMG++LI EIHNNPS L S++VR GSPL+GQDVG+ VGIS +G+K
Sbjct: 1 MQKSPMRIVILGGGRMGRSLINEIHNNPSFILTSVVVRQGSPLVGQDVGDVVGISTIGVK 60
Query: 61 FSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA 120
FSD+L A+QSVDGIIDFSSP LTLQSL+IS+Q N+VH+IGTTGFS+KENE+I+SFA+N
Sbjct: 61 FSDDLVTAMQSVDGIIDFSSPVLTLQSLDISSQRNLVHVIGTTGFSIKENEMIASFAKNC 120
Query: 121 PIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIA 180
IVKS NMSLGINFL FLV+TA+EY P+KDWDFEILEMHHRRKLDSPSGTA LLGEAIA
Sbjct: 121 RIVKSGNMSLGINFLRFLVKTASEY-FPSKDWDFEILEMHHRRKLDSPSGTAFLLGEAIA 179
Query: 181 NGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD 240
GRKVN DH+VLNR+ QQ R EGSIGI+SLR GSIVGEHSVV+AGEGESITLSHSA+D
Sbjct: 180 EGRKVNFADHVVLNRNKQQRVREEGSIGISSLRGGSIVGEHSVVVAGEGESITLSHSAHD 239
Query: 241 RRIFARGSLTAALWAKSQIPGLYSMRDVLGIGLDKEK 277
R +FARG+LTAALWA+ + GLYSM DVL + L ++K
Sbjct: 240 RCVFARGALTAALWAEFKNFGLYSMYDVLDVELIRKK 276
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150398560|ref|YP_001329027.1| dihydrodipicolinate reductase [Sinorhizobium medicae WSM419] Length = 272 | Back alignment and organism information |
|---|
Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 194/272 (71%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M ++ MR+ V+G GRMGQ LI+ +H P + LH+ I RSGSP +G+D G G+ MG+
Sbjct: 1 MSETDMRLVVVGAAGRMGQTLIRIVHETPGVRLHAAIERSGSPFLGRDAGELAGVGQMGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
SD A +G++DF++P+ T++ +++AQ IVH++GTTG S + I + AR+
Sbjct: 61 AVSDKPLEAFVEAEGVLDFTAPSATVEFADLAAQARIVHVVGTTGCSADDEARIRAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A ++KS NMSLG+N LG L E AA L PA+ WD EILEMHHR K+D+PSGTALLLGEA
Sbjct: 121 ARVIKSGNMSLGVNLLGVLTEKAARAL-PAQGWDIEILEMHHRHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR + L DH V R AR EG+IG A+LR GS++GEHSVVIAGEGE +TLSHSA
Sbjct: 180 ARGRGIKLADHSVRVRDGHTGARVEGAIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSAT 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG+++AA+W +SQ PG YSM DVLG+
Sbjct: 240 DRSIFARGAVSAAIWGRSQKPGFYSMLDVLGL 271
|
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227823992|ref|YP_002827965.1| dihydrodipicolinate reductase [Sinorhizobium fredii NGR234] Length = 272 | Back alignment and organism information |
|---|
Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/272 (53%), Positives = 190/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M ++ M++ V+G GRMGQ LI+ +H + LH+ I RS SP IG+D G G+ P+G+
Sbjct: 1 MSETDMKLVVVGAAGRMGQTLIRTVHEAAGVRLHAAIERSNSPFIGRDAGELAGLGPIGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
+D A +G++DF++PA T++ ++AQ IVH+IGTTG S + I + AR+
Sbjct: 61 PITDKPLEAFVEAEGVLDFTAPAGTVEFAGLAAQARIVHVIGTTGCSADDEAKIRAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A +VKS NMSLG+N LG L ETAA L AKDWD EILEMHHR K+D+PSGTALLLGEA
Sbjct: 121 ARVVKSGNMSLGVNLLGVLTETAARAL-SAKDWDIEILEMHHRHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L D V R R +G+IG A+LR G +VGEHSV++AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLADQAVKVRDGHTGPRPQGTIGFATLRGGLVVGEHSVILAGEGELVTLSHSAT 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALW +SQ PG Y+M DVLG+
Sbjct: 240 DRSIFARGAVAAALWGRSQKPGFYTMLDVLGL 271
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15963914|ref|NP_384267.1| dihydrodipicolinate reductase [Sinorhizobium meliloti 1021] Length = 272 | Back alignment and organism information |
|---|
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 192/272 (70%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M+++ M++ V+G GRMGQ LI+ IH + LH+ I R+GSP IG+D G G PMG+
Sbjct: 1 MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
+D A +G++DF++PA T++ ++AQ IVH++GTTG S + I + AR+
Sbjct: 61 AVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A ++KS NMSLG+N LG L E AA L PA WD EILEMHH+ K+D+PSGTALLLGEA
Sbjct: 121 ARVIKSGNMSLGVNLLGVLTEKAARAL-PAGGWDIEILEMHHKHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L DH V R AR EGSIG A+LR GS++GEHSVVIAGEGE +TLSHSA
Sbjct: 180 ARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSAT 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALW +S+ PG YSM DVLG+
Sbjct: 240 DRSIFARGAVAAALWGRSRKPGFYSMLDVLGL 271
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222084416|ref|YP_002542945.1| dihydrodipicolinate reductase protein [Agrobacterium radiobacter K84] Length = 274 | Back alignment and organism information |
|---|
Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 145/272 (53%), Positives = 188/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M M++ V+G GRMGQALI+ IH +TLH+ + R GS IG+D G G+ +GI
Sbjct: 1 MSDDAMKLVVVGAAGRMGQALIRLIHATEGLTLHAAVARPGSAFIGKDAGEIAGLGQIGI 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
+D+ A DG+IDF++PA ++ +++AQ IVH+IGTTG S ++ + AR+
Sbjct: 61 PVTDDPLSAFLHADGVIDFTTPATSVTFADLAAQARIVHVIGTTGCSAEDETRFKAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A IVKS NM LGIN L LVE AA L PA DWD E+LEMHH+ K+D+PSGTALLLGEA
Sbjct: 121 ARIVKSGNMGLGINLLSVLVEQAARALPPA-DWDIEVLEMHHKHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L DH V R R GSIG A+LR G+++G+HSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLGDHSVRVRDGYTGPRPAGSIGFATLRGGAVIGDHSVIFAGEGERLTLSHSAG 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR +FARG+L AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSLFARGALQAALWARDKKPGLYSMLDVLGL 271
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86355830|ref|YP_467722.1| dihydrodipicolinate reductase [Rhizobium etli CFN 42] Length = 274 | Back alignment and organism information |
|---|
Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 144/272 (52%), Positives = 191/272 (70%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M + M++ V+G GRMGQ LI+ IH+ +TLH+ + R+GSP IG+D G G+ P G+
Sbjct: 1 MSDAAMKLVVVGAAGRMGQTLIRLIHSIEGVTLHAAVERAGSPFIGKDAGEIAGLGPTGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
D+ A +G++DF++PA T++ ++AQ IVH++GTTG S ++N I++ AR+
Sbjct: 61 IIGDDPLQAFLHAEGVVDFTAPAATVEFSGLAAQARIVHVVGTTGCSTEDNTKIAAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A +VKS NMSLG+N L L E AA L PA DWD EILEMHHR K+D+PSGTALL GEA
Sbjct: 121 ARVVKSGNMSLGVNLLSVLAEQAARALDPA-DWDIEILEMHHRHKVDAPSGTALLFGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L V R AR G+IG A+LR GS++GEHSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRNIDLASKSVRVRDGHTGAREAGTIGFATLRGGSVIGEHSVLFAGEGEIVTLSHSAA 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSIFARGAIKAALWARDEKPGLYSMLDVLGL 271
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|218515892|ref|ZP_03512732.1| dihydrodipicolinate reductase [Rhizobium etli 8C-3] Length = 274 | Back alignment and organism information |
|---|
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/272 (52%), Positives = 190/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M + M++ V+G GRMGQ LI+ IH+ +TLH+ + R+GSP +G+D G G+ P G+
Sbjct: 1 MSDAAMKLVVVGAAGRMGQTLIRLIHSMEGVTLHAAVERTGSPFVGKDAGEIAGLGPTGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
D+ A +G++DF+SPA T++ ++AQ IVHI+GTTG S +N I++ AR+
Sbjct: 61 IIGDDPLNAFLHAEGVLDFTSPAATVEFSGLAAQARIVHIVGTTGCSEDDNARIAAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A IVKS NMSLG+N L L E A+ L P DWD EILEMHH+ K+D+PSGTALLLGEA
Sbjct: 121 ARIVKSGNMSLGVNLLSVLTEQASRALDP-DDWDIEILEMHHKHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L V R AR G+IG A+LR GS++GEHSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLASKSVKVRDGHTGAREAGTIGFATLRGGSVIGEHSVLFAGEGEIVTLSHSAA 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSIFARGAIKAALWARDKKPGLYSMLDVLGL 271
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209551698|ref|YP_002283615.1| dihydrodipicolinate reductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 274 | Back alignment and organism information |
|---|
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 145/272 (53%), Positives = 189/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M + M++ V+G GRMGQ LI+ IH+ TLH+ + RSGSP IG+D G G+ P GI
Sbjct: 1 MSDAAMKLVVVGAAGRMGQTLIRLIHSIEGATLHAAVERSGSPFIGKDAGEIAGLGPSGI 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
D+ A +G++DF+SPA T + ++AQ IVH++GTTG S ++ I++ AR+
Sbjct: 61 LIGDDPLNAFLHAEGVLDFTSPAATAEFSGLAAQARIVHVVGTTGCSADDDARIAAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A +VKS NMSLG+N L L E AA L P +DWD EILEMHH+ K+D+PSGTALLLGEA
Sbjct: 121 ARVVKSGNMSLGVNLLSVLAEQAARALEP-EDWDIEILEMHHKHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L V R AR G+IG A+LR GS++GEHSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLASKSVRVRDGHTGAREAGTIGFATLRGGSVIGEHSVLFAGEGEIVTLSHSAA 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSIFARGAIKAALWARDKKPGLYSMLDVLGL 271
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116249947|ref|YP_765785.1| dihydrodipicolinate reductase [Rhizobium leguminosarum bv. viciae 3841] Length = 274 | Back alignment and organism information |
|---|
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 142/272 (52%), Positives = 189/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M + M++ V+G GRMGQ LI+ IH+ + LH+ + R+GSP +G+D G G+ P G+
Sbjct: 1 MSDAAMKLVVVGAAGRMGQTLIRLIHSIEGVRLHAAVERAGSPFVGKDAGEIAGLGPTGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
D+ A +G++DF+SPA T++ ++AQ IVH++GTTG S +N I++ AR+
Sbjct: 61 IIGDDPLNAFLDAEGVLDFTSPAATVEFSGLAAQARIVHVVGTTGCSADDNTKIAAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A IVKS NMSLG+N L L E AA L P DWD EILEMHH+ K+D+PSGTALL+GEA
Sbjct: 121 ARIVKSGNMSLGVNLLSVLAEQAARALDP-DDWDIEILEMHHKHKVDAPSGTALLIGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L V R AR G+IG A+LR GS++GEHSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLASQSVRVRDGHTGAREAGTIGFATLRGGSVIGEHSVLFAGEGEIVTLSHSAA 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSIFARGAIKAALWARDKKPGLYSMLDVLGL 271
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|327192337|gb|EGE59301.1| dihydrodipicolinate reductase [Rhizobium etli CNPAF512] Length = 274 | Back alignment and organism information |
|---|
Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 145/272 (53%), Positives = 189/272 (69%), Gaps = 2/272 (0%)
Query: 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI 59
M + M++ V+G GRMGQ LI+ IH+ +TLH+ + R+GSP IG+D G G+ P G+
Sbjct: 1 MSDAAMKLVVVGAAGRMGQTLIRLIHSMEGVTLHAAVERTGSPFIGKDAGEIAGLGPTGV 60
Query: 60 KFSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119
D+ A +G++DF+SPA T++ + AQ IVHI+GTTG S +N I++ AR+
Sbjct: 61 IIGDDPLNAFLHAEGVLDFTSPAATVEFSGLVAQARIVHIVGTTGCSEDDNARIAAAARH 120
Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179
A IVKS NMSLG+N L L E A+ L P DWD EILEMHH+ K+D+PSGTALLLGEA
Sbjct: 121 ARIVKSGNMSLGVNLLSVLTEQASRALDP-DDWDIEILEMHHKHKVDAPSGTALLLGEAA 179
Query: 180 ANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239
A GR ++L V R AR G+IG A+LR GS++GEHSV+ AGEGE +TLSHSA
Sbjct: 180 AKGRGIDLASKSVKVRDGHTGAREVGAIGFATLRGGSVIGEHSVLFAGEGEIVTLSHSAA 239
Query: 240 DRRIFARGSLTAALWAKSQIPGLYSMRDVLGI 271
DR IFARG++ AALWA+ + PGLYSM DVLG+
Sbjct: 240 DRSIFARGAIKAALWARDKKPGLYSMLDVLGL 271
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 280 | dihydrodipicolinate reductase [Candidatus Liberibacter | ||
| PRK00048 | 257 | PRK00048, PRK00048, dihydrodipicolinate reductase; Prov | 9e-83 | |
| TIGR00036 | 266 | TIGR00036, dapB, dihydrodipicolinate reductase | 1e-61 | |
| COG0289 | 266 | COG0289, DapB, Dihydrodipicolinate reductase [Amino aci | 3e-79 | |
| pfam05173 | 137 | pfam05173, DapB_C, Dihydrodipicolinate reductase, C-ter | 4e-43 | |
| pfam01113 | 122 | pfam01113, DapB_N, Dihydrodipicolinate reductase, N-ter | 1e-28 |
| >gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 9e-83
Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 12/268 (4%)
Query: 5 PMRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD 63
++++V G GRMG+ LI+ + + L + + R GSPL+GQ +G+ +D
Sbjct: 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQG--------ALGVAITD 52
Query: 64 NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123
+L + D +IDF++P TL++L + +H +IGTTGF+ ++ + A+ P+V
Sbjct: 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVV 112
Query: 124 KSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGR 183
+ N S+G+N L L E AA+YL D+D EI+E HHR K+D+PSGTAL L EAIA R
Sbjct: 113 IAPNFSIGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEAR 169
Query: 184 KVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243
+L + V R AR +G IGI S+R G IVGEH V+ AG+GE I + H A R
Sbjct: 170 GRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATSRMS 229
Query: 244 FARGSLTAALWAKSQIPGLYSMRDVLGI 271
FA G+L AA W + PGLY M DVLG+
Sbjct: 230 FAPGALLAARWLVGKKPGLYGMEDVLGL 257
|
Length = 257 |
| >gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 1e-61
Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 6/268 (2%)
Query: 6 MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN 64
++++V G GRMG+ LIK + L + R GS L G D G GI +G+ +D+
Sbjct: 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDD 61
Query: 65 LAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA--RNAPI 122
L D +IDF++P L L + +H + ++GTTGFS ++ + ++ A
Sbjct: 62 LEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAA 121
Query: 123 VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANG 182
V + N S+G+N + L+E AA+YL D+D EI+E+HHR K D+PSGTAL E IA
Sbjct: 122 VIAPNFSIGVNLMFKLLEKAAKYL---GDYDIEIIELHHRHKKDAPSGTALKTAEMIAEA 178
Query: 183 RKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242
R L + V R R IGI ++R G +VGEH+V+ AG+GE + ++H A R
Sbjct: 179 RGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHRASSRA 238
Query: 243 IFARGSLTAALWAKSQIPGLYSMRDVLG 270
FA G++ AA W + G+Y M DVL
Sbjct: 239 CFANGAVRAARWLADKEAGVYDMEDVLD 266
|
Length = 266 |
| >gnl|CDD|30637 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 3e-79
Identities = 119/269 (44%), Positives = 161/269 (59%), Gaps = 4/269 (1%)
Query: 4 SPMRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS 62
S ++++V G GRMG+ LI+ + P + L + R GS +G D G G+ +G+ +
Sbjct: 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVT 60
Query: 63 DNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI 122
D+L + D +IDF++P TL++L + +H +IGTTGF+ ++ E + A P+
Sbjct: 61 DDLLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPV 120
Query: 123 VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANG 182
V + N SLG+N L L E AA+ L D+D EI+E HHR K D+PSGTAL L EAIA
Sbjct: 121 VIAPNFSLGVNLLFKLAEQAAKVL---DDYDIEIIEAHHRHKKDAPSGTALKLAEAIAEA 177
Query: 183 RKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242
R +L D V R AR EG IGI S+R G IVGEH V+ AGEGE I + H A R
Sbjct: 178 RGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRHRATSRD 237
Query: 243 IFARGSLTAALWAKSQIPGLYSMRDVLGI 271
FARG+L AA W + PGLY M DVLG+
Sbjct: 238 SFARGALLAARWLVGKPPGLYDMEDVLGL 266
|
Length = 266 |
| >gnl|CDD|147385 pfam05173, DapB_C, Dihydrodipicolinate reductase, C-terminus | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 4e-43
Identities = 69/140 (49%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 131 GINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDH 190
G+N L L E AA+YL D+D EI+E+HHR+K D+PSGTAL L EAIA R L
Sbjct: 1 GVNLLMKLAEEAAKYL--GDDYDIEIIEIHHRQKKDAPSGTALKLAEAIAEARGEALEVV 58
Query: 191 MVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLT 250
R R+ IGI S+R G +VGEH V+ G+GE I ++H A+ R IFA G+L
Sbjct: 59 ADE-REGGTRGRSVNEIGIHSVRGGGVVGEHEVIFGGDGERIEITHDAHSREIFAPGALL 117
Query: 251 AALW-AKSQIPGLYSMRDVL 269
AA W A ++PGLY M DVL
Sbjct: 118 AAEWLAGKKLPGLYGMEDVL 137
|
Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The C-terminal domain of DapB has been proposed to be the substrate- binding domain. Length = 137 |
| >gnl|CDD|144632 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 6 MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN 64
++++V+G GRMG+ LIK I P L + + R GS L+G D G G P+G+ +D+
Sbjct: 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAG--PLGVPVTDD 58
Query: 65 LAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVK 124
L + D +IDF++P TL++L ++ +H +IGTTGF+ ++ + A+ PIV
Sbjct: 59 LEEVLADADVLIDFTTPEATLENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPIVI 118
Query: 125 SSNM 128
+ N
Sbjct: 119 APNF 122
|
Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 280 | dihydrodipicolinate reductase [Candidatus Liberibacter | ||
| TIGR00036 | 281 | dapB dihydrodipicolinate reductase; InterPro: IPR011770 | 100.0 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid transpor | 100.0 | |
| PRK00048 | 265 | dihydrodipicolinate reductase; Provisional | 100.0 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase; InterPro: IPR | 99.96 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 99.08 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 99.06 | |
| TIGR01921 | 326 | DAP-DH diaminopimelate dehydrogenase; InterPro: IPR0101 | 98.75 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related proteins [A | 98.66 | |
| TIGR03450 | 351 | mycothiol_INO1 inositol 1-phosphate synthase, Actinobac | 96.97 | |
| COG1260 | 362 | INO1 Myo-inositol-1-phosphate synthase [Lipid metabolis | 94.88 | |
| pfam05173 | 137 | DapB_C Dihydrodipicolinate reductase, C-terminus. Dihyd | 100.0 | |
| pfam01113 | 122 | DapB_N Dihydrodipicolinate reductase, N-terminus. Dihyd | 99.97 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.11 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 99.05 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid transpor | 99.03 | |
| pfam01408 | 120 | GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossman | 98.79 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General functi | 98.79 | |
| PRK08374 | 316 | homoserine dehydrogenase; Provisional | 98.79 | |
| PRK06349 | 432 | homoserine dehydrogenase; Provisional | 98.71 | |
| PRK06270 | 342 | homoserine dehydrogenase; Provisional | 98.62 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins [Gen | 98.61 | |
| pfam03447 | 116 | NAD_binding_3 Homoserine dehydrogenase, NAD binding dom | 98.59 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.58 | |
| PRK10206 | 345 | putative dehydrogenase; Provisional | 98.54 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihydrodip | 98.49 | |
| PRK06813 | 341 | homoserine dehydrogenase; Validated | 98.48 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 98.43 | |
| pfam01210 | 159 | NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehyd | 98.42 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.35 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transport and | 98.33 | |
| KOG2741 | 351 | consensus | 98.29 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.28 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.25 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 98.25 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.24 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.2 | |
| PRK08664 | 350 | aspartate-semialdehyde dehydrogenase; Reviewed | 98.2 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 98.18 | |
| pfam01118 | 121 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding | 98.18 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid tran | 98.16 | |
| PRK06476 | 255 | pyrroline-5-carboxylate reductase; Reviewed | 98.14 | |
| PRK06928 | 275 | pyrroline-5-carboxylate reductase; Reviewed | 98.07 | |
| PRK05678 | 289 | succinyl-CoA synthetase subunit alpha; Validated | 98.0 | |
| PRK08955 | 333 | glyceraldehyde-3-phosphate dehydrogenase; Validated | 97.96 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.93 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validated | 97.9 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [Amino | 97.86 | |
| PRK00436 | 345 | argC N-acetyl-gamma-glutamyl-phosphate reductase; Valid | 97.85 | |
| pfam03446 | 163 | NAD_binding_2 NAD binding domain of 6-phosphogluconate | 97.84 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 97.72 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 97.71 | |
| PRK09436 | 817 | thrA bifunctional aspartokinase I/homeserine dehydrogen | 97.67 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino acid tr | 97.64 | |
| pfam03807 | 93 | F420_oxidored NADP oxidoreductase coenzyme F420-depende | 97.57 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine dehydr | 97.54 | |
| PRK08040 | 337 | putative semialdehyde dehydrogenase; Provisional | 97.54 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energy pro | 97.53 | |
| pfam00899 | 134 | ThiF ThiF family. This family contains a repeated domai | 97.51 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding | 97.5 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.45 | |
| PRK06598 | 348 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.43 | |
| PRK11863 | 314 | N-acetyl-gamma-glutamyl-phosphate reductase; Provisiona | 97.42 | |
| PRK05472 | 211 | redox-sensing transcriptional repressor Rex; Provisiona | 97.39 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 97.39 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function predictio | 97.39 | |
| PTZ00187 | 309 | succinyl-CoA synthetase alpha subunit; Provisional | 97.38 | |
| PTZ00142 | 474 | 6-phosphogluconate dehydrogenase; Provisional | 97.37 | |
| PRK08293 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.34 | |
| CHL00194 | 319 | ycf39 Ycf39; Provisional | 97.31 | |
| TIGR02717 | 457 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP formi | 97.28 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like | 97.24 | |
| PRK12475 | 337 | thiamine/molybdopterin biosynthesis MoeB-like protein; | 97.24 | |
| PRK09260 | 289 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.21 | |
| PRK07531 | 489 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioestera | 97.19 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases and s | 97.19 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.19 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like prot | 97.14 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes (E1) | 97.11 | |
| PRK07411 | 390 | hypothetical protein; Validated | 97.1 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Validated | 97.08 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provisional | 97.07 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.06 | |
| PRK08328 | 230 | hypothetical protein; Provisional | 97.05 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.05 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | 97.03 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All of the | 97.02 | |
| PRK08762 | 379 | molybdopterin biosynthesis protein MoeB; Validated | 97.0 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.0 | |
| PRK07660 | 283 | consensus | 96.94 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.93 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General funct | 96.93 | |
| PRK09117 | 282 | consensus | 96.92 | |
| PRK09496 | 455 | trkA potassium transporter peripheral membrane componen | 96.9 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehydroge | 96.89 | |
| KOG2711 | 372 | consensus | 96.85 | |
| pfam02737 | 180 | 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding do | 96.84 | |
| pfam00056 | 142 | Ldh_1_N lactate/malate dehydrogenase, NAD binding domai | 96.81 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat 1-li | 96.78 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.77 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 96.64 | |
| PRK07819 | 284 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.59 | |
| KOG1255 | 329 | consensus | 96.58 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.53 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transport and | 96.51 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.45 | |
| PRK08644 | 209 | thiamine biosynthesis protein ThiF; Provisional | 96.38 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | 96.38 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [Inorg | 96.37 | |
| TIGR02356 | 210 | adenyl_thiF thiazole biosynthesis adenylyltransferase T | 96.37 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.35 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Members | 96.32 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrog | 96.32 | |
| PTZ00082 | 322 | L-lactate dehydrogenase; Provisional | 96.31 | |
| PRK06545 | 357 | prephenate dehydrogenase; Validated | 96.3 | |
| pfam02423 | 312 | OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin | 96.27 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat 2-li | 96.26 | |
| KOG0172 | 445 | consensus | 96.24 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.18 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein; Pro | 96.11 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, | 96.07 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequences | 96.04 | |
| PRK10083 | 339 | putative dehydrogenase; Provisional | 95.98 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism associate | 95.97 | |
| PRK03369 | 487 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.94 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohy | 95.9 | |
| TIGR01534 | 366 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type | 95.78 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.77 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelop | 95.69 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.69 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-dependent de | 95.69 | |
| PRK02006 | 501 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.67 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate dehydr | 95.58 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknown] | 95.53 | |
| PRK01368 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.48 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General functio | 95.46 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope bi | 95.45 | |
| PRK06407 | 302 | ornithine cyclodeaminase; Provisional | 95.45 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.39 | |
| pfam10727 | 111 | Rossmann-like Rossmann-like domain. This family of prot | 95.36 | |
| PRK06522 | 307 | 2-dehydropantoate 2-reductase; Reviewed | 95.36 | |
| PRK12921 | 306 | 2-dehydropantoate 2-reductase; Provisional | 95.34 | |
| PRK01438 | 481 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 95.32 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 95.3 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 95.29 | |
| PRK13771 | 332 | putative alcohol dehydrogenase; Provisional | 95.02 | |
| KOG1198 | 347 | consensus | 94.95 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-am | 94.94 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provisional | 94.89 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 94.69 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 94.65 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketide syn | 94.57 | |
| PRK05562 | 222 | precorrin-2 dehydrogenase; Provisional | 94.55 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.44 | |
| PRK06901 | 323 | aspartate-semialdehyde dehydrogenase; Provisional | 94.43 | |
| PRK01390 | 457 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 94.4 | |
| TIGR00872 | 341 | gnd_rel 6-phosphogluconate dehydrogenase (decarboxylati | 94.11 | |
| pfam02826 | 176 | 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogen | 94.09 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 94.05 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 93.88 | |
| pfam00107 | 131 | ADH_zinc_N Zinc-binding dehydrogenase. | 93.79 | |
| pfam02254 | 115 | TrkA_N TrkA-N domain. This domain is found in a wide va | 93.72 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate de | 93.63 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.63 | |
| KOG4354 | 340 | consensus | 93.59 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-dependent ox | 93.5 | |
| TIGR01087 | 476 | murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; I | 93.47 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provisional | 93.19 | |
| KOG2018 | 430 | consensus | 93.19 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 93.16 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 93.08 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ce | 93.07 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase [Ami | 93.03 | |
| pfam10087 | 96 | DUF2325 Uncharacterized protein conserved in bacteria ( | 92.9 | |
| TIGR01761 | 378 | thiaz-red thiazolinyl imide reductase; InterPro: IPR010 | 92.73 | |
| pfam06408 | 471 | consensus | 92.6 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. | 92.56 | |
| TIGR01296 | 350 | asd_B aspartate-semialdehyde dehydrogenase; InterPro: I | 92.34 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function predict | 92.29 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate de | 91.92 | |
| PRK12767 | 325 | carbamoyl phosphate synthase-like protein; Provisional | 91.87 | |
| PRK09496 | 455 | trkA potassium transporter peripheral membrane componen | 91.59 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC; InterPro | 91.58 | |
| TIGR01759 | 329 | MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 | 91.44 | |
| pfam04321 | 284 | RmlD_sub_bind RmlD substrate binding domain. L-rhamnose | 91.35 | |
| PRK09414 | 446 | glutamate dehydrogenase; Provisional | 91.35 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of gluta | 91.14 | |
| KOG1014 | 312 | consensus | 90.85 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.83 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.76 | |
| TIGR01202 | 325 | bchC Chlorophyll synthesis pathway, bchC; InterPro: IPR | 90.46 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzy | 90.13 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | 90.12 | |
| PRK04207 | 338 | glyceraldehyde-3-phosphate dehydrogenase; Provisional | 99.01 | |
| TIGR01546 | 335 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenas | 98.3 | |
| PRK08300 | 298 | acetaldehyde dehydrogenase; Validated | 97.87 | |
| pfam02629 | 96 | CoA_binding CoA binding domain. This domain has a Rossm | 97.84 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). | 97.69 | |
| pfam03721 | 185 | UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase fa | 97.28 | |
| PRK06130 | 310 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.23 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate | 97.21 | |
| PRK12490 | 298 | 6-phosphogluconate dehydrogenase-like protein; Reviewed | 97.2 | |
| pfam01488 | 134 | Shikimate_DH Shikimate / quinate 5-dehydrogenase. This | 97.13 | |
| PRK05442 | 325 | malate dehydrogenase; Provisional | 97.11 | |
| PRK08655 | 441 | prephenate dehydrogenase; Provisional | 97.1 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Reviewed | 97.06 | |
| PTZ00325 | 313 | malate dehydrogenase; Provisional | 97.02 | |
| PRK06223 | 312 | malate dehydrogenase; Reviewed | 96.91 | |
| PRK00045 | 429 | hemA glutamyl-tRNA reductase; Reviewed | 96.83 | |
| TIGR01035 | 436 | hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetra | 96.81 | |
| PRK07417 | 280 | arogenate dehydrogenase; Reviewed | 96.75 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Mal | 96.75 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.66 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate | 96.64 | |
| TIGR00715 | 260 | precor6x_red precorrin-6x reductase; InterPro: IPR00372 | 96.64 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function predic | 96.51 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily of act | 96.46 | |
| PRK00141 | 476 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 96.43 | |
| PRK08268 | 503 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.42 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of gl | 96.3 | |
| KOG1502 | 327 | consensus | 96.22 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.21 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is | 96.2 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like structu | 96.16 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.14 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.87 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and related bet | 95.86 | |
| KOG2380 | 480 | consensus | 95.85 | |
| pfam05368 | 232 | NmrA NmrA-like family. NmrA is a negative transcription | 95.81 | |
| PTZ00117 | 313 | malate dehydrogenase; Provisional | 95.72 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubiquiti | 95.64 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 95.37 | |
| PRK08291 | 330 | ornithine cyclodeaminase; Validated | 95.35 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.08 | |
| TIGR02853 | 288 | spore_dpaA dipicolinic acid synthetase, A subunit; Inte | 94.95 | |
| PRK06019 | 377 | phosphoribosylaminoimidazole carboxylase ATPase subunit | 94.88 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Secondar | 94.86 | |
| PRK06141 | 313 | ornithine cyclodeaminase; Validated | 94.78 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy production an | 94.68 | |
| cd04510 | 334 | consensus | 94.68 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 94.54 | |
| PRK05447 | 379 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provis | 94.34 | |
| PRK10124 | 464 | putative UDP-glucose lipid carrier transferase; Provisi | 94.22 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 94.16 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related dehydro | 94.01 | |
| KOG0069 | 336 | consensus | 94.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 93.92 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdopteri | 93.9 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 93.78 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogenases [ | 93.74 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotra | 93.68 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 93.66 | |
| KOG1494 | 345 | consensus | 93.61 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polyprenyl | 93.6 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 93.39 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 93.35 | |
| COG4693 | 361 | PchG Oxidoreductase (NAD-binding), involved in sideroph | 93.22 | |
| PRK02472 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 92.52 | |
| PRK00258 | 275 | aroE shikimate 5-dehydrogenase; Reviewed | 92.35 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 92.27 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyl | 92.26 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin homol | 91.83 | |
| pfam02571 | 246 | CbiJ Precorrin-6x reductase CbiJ/CobK. This family cons | 91.45 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.32 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 91.13 | |
| PRK13581 | 524 | D-3-phosphoglycerate dehydrogenase; Provisional | 90.86 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases [Cell | 90.63 | |
| KOG0409 | 327 | consensus | 90.08 | |
| pfam03435 | 384 | Saccharop_dh Saccharopine dehydrogenase. This family co | 98.73 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy product | 98.17 | |
| PRK12439 | 340 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; P | 98.15 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+ | 98.14 | |
| PRK11559 | 295 | garR tartronate semialdehyde reductase; Provisional | 97.83 | |
| COG1810 | 224 | Uncharacterized protein conserved in archaea [Function | 96.06 | |
| pfam02593 | 215 | DUF166 Uncharacterized ArCR, COG1810. | 95.94 | |
| PRK03562 | 615 | glutathione-regulated potassium-efflux system protein K | 95.83 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | 95.28 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate | 95.23 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydrolase | 95.03 | |
| PRK03659 | 602 | glutathione-regulated potassium-efflux system protein K | 94.87 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex subun | 94.74 | |
| KOG0455 | 364 | consensus | 94.68 | |
| TIGR02817 | 338 | adh_fam_1 zinc-binding alcohol dehydrogenase family pro | 94.62 | |
| PRK11154 | 706 | fadJ multifunctional fatty acid oxidation complex subun | 94.34 | |
| TIGR01214 | 317 | rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005 | 93.18 | |
| ), spermine synthase ( | 284 | speE spermidine synthase; InterPro: IPR001045 Synonym(s | 92.72 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose | 98.22 | |
| TIGR01850 | 361 | argC N-acetyl-gamma-glutamyl-phosphate reductase; Inter | 97.99 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisional | 97.98 | |
| TIGR00978 | 358 | asd_EA aspartate-semialdehyde dehydrogenase; InterPro: | 97.93 | |
| TIGR01532 | 334 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; In | 95.67 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid transport | 90.91 | |
| pfam00044 | 150 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD b | 98.05 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD b | 98.05 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochond | 96.86 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 95.33 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate dehydrog | 95.21 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.08 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2; Val | 94.31 | |
| PRK12367 | 250 | short chain dehydrogenase; Provisional | 93.42 | |
| PRK08289 | 479 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 92.8 | |
| pfam02670 | 129 | DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoi | 92.0 | |
| pfam01370 | 235 | Epimerase NAD dependent epimerase/dehydratase family. T | 92.0 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 90.78 | |
| KOG2304 | 298 | consensus | 90.54 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 90.46 | |
| KOG2653 | 487 | consensus | 90.36 | |
| pfam02558 | 150 | ApbA Ketopantoate reductase PanE/ApbA. This is a family | 90.18 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 93.47 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 93.36 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 92.68 |
| >TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=625.56 Aligned_cols=265 Identities=37% Similarity=0.664 Sum_probs=258.2 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH------HCCCCEEE Q ss_conf 737999899-87799999999838-99789999964898020455366608754675455685785------21355047 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA------IQSVDGII 76 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~------~~~~DViI 76 (280) T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVli 80 (281) T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLI 80 (281) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 98358847887346999999997489816788886168885665420242255478410005788999874023686478 Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-H Q ss_conf 6310102478887643237215765022231358999874035--552100001156899999999999861156660-0 Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFLVETAAEYLLPAKDW-D 153 (280) Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~-d 153 (280) T Consensus 81 DFT~p~g~~~~~~~a~~~Gv~~V~GTTGf~e~~~~~~~~~a~~~~~~~v~A~NFa~GV~~~~K~~~~aA~~l---~D~~D 157 (281) T TIGR00036 81 DFTTPEGVVENVKIALENGVRLVVGTTGFSEEDLQELRDLAEKKGVAAVIAPNFAIGVNLMFKLLEKAAKYL---GDYTD 157 (281) T ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCCC T ss_conf 738605678999999966885577166899899999999998649978984650689999999999998762---45655 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCCEEEEEEEECCC Q ss_conf 8999986416789986789999999985328-876422111235767654334565---013752882057999981899 Q gi|254780279|r 154 FEILEMHHRRKLDSPSGTALLLGEAIANGRK-VNLTDHMVLNRHIQQCARTEGSIG---IASLRAGSIVGEHSVVIAGEG 229 (280) Q Consensus 154 ieI~E~HH~~K~DaPSGTA~~la~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~---i~s~R~g~~~g~H~V~f~~~~ 229 (280) T Consensus 158 iEIIE~HHr~K~DAPSGTAL~~~E~i~~~~~~~~~~~~~v~~REG~~G~R~~~~iGqI~~~~~RggDvvG~H~V~F~~~G 237 (281) T TIGR00036 158 IEIIELHHRHKKDAPSGTALKLAEIIAEARGEKDIKEVAVTEREGLTGERGREEIGQIRIHAVRGGDVVGEHTVLFAGDG 237 (281) T ss_pred EEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCC T ss_conf 45441200258999707899999999987055430003655456777888888897137998725771354678875898 Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHCCC Q ss_conf 5899999972737679999999999834899-836888982688 Q gi|254780279|r 230 ESITLSHSAYDRRIFARGSLTAALWAKSQIP-GLYSMRDVLGIG 272 (280) Q Consensus 230 E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~~~-G~y~m~dvL~l~ 272 (280) T Consensus 238 E~~ei~H~A~sR~~F~~Gv~~a~~~~~~~~~g~~Y~~~d~L~lN 281 (281) T TIGR00036 238 ERIEITHRASSRAAFANGVVRAIRWIADKDKGGVYDMEDVLGLN 281 (281) T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC T ss_conf 54899861233678888999999999874178720557650379 |
It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=599.01 Aligned_cols=265 Identities=45% Similarity=0.731 Sum_probs=259.5 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC Q ss_conf 8737999899-877999999998389978999996489802045536660875467545568578521355047631010 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280) T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266) T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266) T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCCCCCCEEEECCCCH T ss_conf 97369997578727899999985289946999981378422343112321446557332063433046898899899825 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 24788876432372157650222313589998740355521000011568999999999998611566600899998641 Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHR 162 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~ 162 (280) T Consensus 81 ~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~---~~DiEIiE~HHr 157 (266) T COG0289 81 ATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD---DYDIEIIEAHHR 157 (266) T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCC T ss_conf 46999999997699869979999989999999998538989965640799999999999998667---788786323236 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHH Q ss_conf 67899867899999999853288764221112357676543345650137528820579999818995899999972737 Q gi|254780279|r 163 RKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242 (280) Q Consensus 163 ~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~ 242 (280) T Consensus 158 ~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~GE~iei~H~A~sR~ 237 (266) T COG0289 158 HKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRHRATSRD 237 (266) T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCHH T ss_conf 67889867899999999986065654341560367767778897216875548812047999724882799998413188 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHCC Q ss_conf 67999999999983489983688898268 Q gi|254780279|r 243 IFARGSLTAALWAKSQIPGLYSMRDVLGI 271 (280) Q Consensus 243 ~Fa~Gal~aa~~l~~~~~G~y~m~dvL~l 271 (280) T Consensus 238 ~Fa~Gal~aa~wi~~k~~g~Y~m~dvL~l 266 (266) T COG0289 238 SFARGALLAARWLVGKPPGLYDMEDVLGL 266 (266) T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHCC T ss_conf 88888999999982789871026885266 |
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=589.18 Aligned_cols=263 Identities=44% Similarity=0.757 Sum_probs=257.6 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 737999899-8779999999983899789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~DVvIDFS~p~~ 81 (265) T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDDFDVLIDFTTPEA 81 (265) T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCCCCEEEECCCHHH T ss_conf 45999988888779999999986899799999946897233653566527676784311789886055998998998899 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC Q ss_conf 47888764323721576502223135899987403555210000115689999999999986115666008999986416 Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRR 163 (280) Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~ 163 (280) T Consensus 82 ~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i~~~s~~ipil~apNfSlGvnll~~l~~~aa~~l---~~~dieIiE~HH~~ 158 (265) T PRK00048 82 TLENLEFALEHGKPLVIGTTGFTEEQLAALREAAKKIPVVIAPNFSVGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRH 158 (265) T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCC T ss_conf 999999999749977996089998999999974658878997855899999999999999756---65777999906888 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHHH Q ss_conf 78998678999999998532887642211123576765433456501375288205799998189958999999727376 Q gi|254780279|r 164 KLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243 (280) Q Consensus 164 K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~ 243 (280) T Consensus 159 K~DaPSGTAl~la~~i~~~~~~~~~~~~~~~~~~~~g~r~~~~I~i~SiR~g~vvG~H~V~f~~~~E~i~i~H~A~~R~~ 238 (265) T PRK00048 159 KVDAPSGTALKLAEAIAEARGRDLKDVAVYGREGATGARVPGGIGIHSVRGGDIVGEHTVIFAGDGERIEIRHDATSRMS 238 (265) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHH T ss_conf 89999888999999999862645655403214565577577861599896589884089997189967999999698888 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHC Q ss_conf 799999999998348998368889826 Q gi|254780279|r 244 FARGSLTAALWAKSQIPGLYSMRDVLG 270 (280) Q Consensus 244 Fa~Gal~aa~~l~~~~~G~y~m~dvL~ 270 (280) T Consensus 239 Fa~Gal~Aa~wl~~k~~g~Y~m~dvLg 265 (265) T PRK00048 239 FAPGALRAARWLVGKKPGLYGMEDVLG 265 (265) T ss_pred HHHHHHHHHHHHHCCCCCEEEEEHHCC T ss_conf 899999999998369997995025048 |
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase; InterPro: IPR011859 This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer) | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=217.06 Aligned_cols=254 Identities=20% Similarity=0.278 Sum_probs=185.2 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCC--CCCHHHHHCC-CC-EEEEEE Q ss_conf 37999899-8779999999983899789999964898020455366608754-67545--5685785213-55-047631 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKF--SDNLAMAIQS-VD-GIIDFS 79 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i--~~dl~~~~~~-~D-ViIDFT 79 (280) T Consensus 1 ~~~MVNG~~G~MG~~V~~~~~-~~G~~~VP~Sl~-~~~~~~~~-~EV~GK~I~~~~P~~RE~~~~~Vl~KYP~lI~~DYT 77 (275) T TIGR02130 1 VSVMVNGISGKMGKIVIKAAV-AAGLELVPYSLT-SVIIVENE-VEVAGKEILLLKPSEREKVLSEVLEKYPELIVVDYT 77 (275) T ss_pred CEEEEECCCCCHHHHHHHHHH-HCCCEEECCCCC-CEEEECCE-EEEECCEEEEECCCHHHHHHHHHHHHCCCEEEECCC T ss_conf 958872678825688887775-478434302556-33563454-665063888617751467899998638875998047 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH Q ss_conf 010247888764323721576502223135899987403555210000115689999999999986115-6660089999 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLP-AKDWDFEILE 158 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~-~~~~dieI~E 158 (280) T Consensus 78 ~P~AVNDNA~lY~K~~~PFVMGTTGGDR~~L~K~V~~~-~~~~VI~P~M~KQ~VAF~~~~E~l~~~FP~AF~GY~L~V~E 156 (275) T TIGR02130 78 IPSAVNDNAELYVKVKVPFVMGTTGGDREALAKLVEDA-KIYAVIAPNMAKQVVAFLAAIEILAKEFPTAFEGYKLEVVE 156 (275) T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 88731220352002357646537874189999998750-77614367302489999999999863077621472168870 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEECCCCCEEEEEEEECCCCEE-- Q ss_conf 86416789986789999999985328876422111235767654334----565013752882057999981899589-- Q gi|254780279|r 159 MHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEG----SIGIASLRAGSIVGEHSVVIAGEGESI-- 232 (280) Q Consensus 159 ~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~I~i~s~R~g~~~g~H~V~f~~~~E~i-- 232 (280) T Consensus 157 SHQ~~K~D~-SGTA~AV~~~FQKl-G~------~Y~~D~I~~~R~~K~Q~E~~~VPEE~~~GH-AFH~Y~L~S~D~TV~F 227 (275) T TIGR02130 157 SHQKSKLDA-SGTAKAVVSTFQKL-GV------DYDMDDIEKVRDEKEQIEVVGVPEEYLSGH-AFHLYSLDSADKTVSF 227 (275) T ss_pred CCCCCCCCC-CCCHHHHHHHHHHC-CC------CCCHHHHHHHCCCCCCEEECCCCCCCCCCC-EEEEEEECCCCCCEEE T ss_conf 111224675-65302201024224-73------247215763227014162334785202772-4565431189970766 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHCCC Q ss_conf 99999727376799999999998348-----99836888982688 Q gi|254780279|r 233 TLSHSAYDRRIFARGSLTAALWAKSQ-----IPGLYSMRDVLGIG 272 (280) Q Consensus 233 ~i~H~a~~R~~Fa~Gal~aa~~l~~~-----~~G~y~m~dvL~l~ 272 (280) T Consensus 228 EFQHNVCGR~IYAEGTVDAV~FLA~~i~~~~~~~~yNM~DVLR~G 272 (275) T TIGR02130 228 EFQHNVCGRKIYAEGTVDAVLFLADKIIAKAEKKIYNMIDVLREG 272 (275) T ss_pred EEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 554143575054062289999999998863116840000000378 |
The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=83.93 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=132.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763101024 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 MmrVgiiG~GaIG~~va~~l~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~~~DlVVE~A~~~av 74 (265) T PRK13303 1 MMKVAMIGFGAIAAAVYELLEHDPRLRVDWVIVPEHSVD------AVRRALGRAVQVVSSVDALAQRPDLVVECAGHAAL 74 (265) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCHH------HHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHH T ss_conf 929999854689999999984499727999994685267------78753045886447988982379999989888999 Q ss_pred HHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-- Q ss_conf 78887643237215765022-23135-899987403555-21000011568999999999998611566600899998-- Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM-- 159 (280) Q Consensus 85 ~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~-- 159 (280) T Consensus 75 ~~~~~~~L~~g~dl~v~SvgALaD~~~~~~l~~~A~~~~~~i~ipsGAigGl---D~l~aa-~~~~---i~~V~~~t~K~ 147 (265) T PRK13303 75 KEHVVPILKAGIDCAVASVGALADEALRERLEQAAEAGGARLHLLSGAIGGI---DALAAA-KEGG---LDEVRYTGRKP 147 (265) T ss_pred HHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHH---HHHHHH-HCCC---CCEEEEEEEEC T ss_conf 9999999972998899881585798899999999986897599726234406---799998-7189---73899998608 Q ss_pred -------HHHCCCC---------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CEEEE Q ss_conf -------6416789---------986789999999985328876422111235767654334565013752882-05799 Q gi|254780279|r 160 -------HHRRKLD---------SPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSI-VGEHS 222 (280) Q Consensus 160 -------HH~~K~D---------aPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~-~g~H~ 222 (280) T Consensus 148 P~~l~~~~~e~~~~l~~~~~~~~~F~G~area~~~f--P~NvNVa--aa~aLA---g-~G~d~t~v~l~aDP~~~~n~H~ 219 (265) T PRK13303 148 PKSWRGSPAEQLCDLDALTEPTVIFEGSAREAARLF--PKNANVA--ATIALA---G-LGLDRTRVELIADPAVTRNVHE 219 (265) T ss_pred HHHHCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHC--CCHHHHH--HHHHHH---C-CCCCCEEEEEEECCCCCCCEEE T ss_conf 578666715431561037777699731899999877--8617699--999985---3-7966359999978998884799 Q ss_pred EEEECCCCEEEEEEEE----CCHHHHHHHHHHHHHHHHCC Q ss_conf 9981899589999997----27376799999999998348 Q gi|254780279|r 223 VVIAGEGESITLSHSA----YDRRIFARGSLTAALWAKSQ 258 (280) Q Consensus 223 V~f~~~~E~i~i~H~a----~~R~~Fa~Gal~aa~~l~~~ 258 (280) T Consensus 220 I~v~g~~g~~~~~i~n~p~~~NPkTS~laa~Svi~~l~~l 259 (265) T PRK13303 220 IEARGAFGEFEFEMSGKPLPDNPKTSALTALSAIRALRNR 259 (265) T ss_pred EEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 9999355789999967748999830899999999999721 |
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=84.74 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=133.4 Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 73799989987799999999838-99789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 1 M~rVgiIG~GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~--~~a~-----~~~~~~~~~ld~l~~~~DlVVE~A~~~a 73 (265) T PRK13304 1 MLKIGIVGCGAIANLITKAIDSGRINAELLAFYDRNLEKAE--NLAE-----KTGAPACLSIDELVKDVDLVVECASQKA 73 (265) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH--HHHH-----CCCCCCCCCHHHHHHCCCEEEECCCHHH T ss_conf 94999986578999999998679986499999789878988--7764-----1599712798998338999998989899 Q ss_pred HHHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---- Q ss_conf 478887643237215765022-23135-899987403555-21000011568999999999998611566600899---- Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEI---- 156 (280) Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI---- 156 (280) T Consensus 74 v~~~~~~~L~~G~dlvv~SvGALaD~~l~~~L~~~A~~~g~~i~ipsGAigG---lD~l~aa~-~~~---l~~V~~~trK 146 (265) T PRK13304 74 VEDTVPKSLNNGKDVIIMSVGALADKELFLKLYKLAKENGCKIYLPSGAIAG---IDGIKAAS-LGE---IESVTLTTRK 146 (265) T ss_pred HHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHH---HHHHHHHH-CCC---CCEEEEEEEE T ss_conf 9999999997599899981368559899999999997379779982613442---78899986-589---7579999874 Q ss_pred -----HHHHHHCCCCCC---------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CEEE Q ss_conf -----998641678998---------6789999999985328876422111235767654334565013752882-0579 Q gi|254780279|r 157 -----LEMHHRRKLDSP---------SGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSI-VGEH 221 (280) Q Consensus 157 -----~E~HH~~K~DaP---------SGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~-~g~H 221 (280) T Consensus 147 ~P~~l~~~~~~~~~~l~~~~e~~~~F~G~Area~~~f--P~NvNVa--aa~aLAg~----~~--t~v~i~aDP~~~~n~H 216 (265) T PRK13304 147 PPHGLEGALEELGINLEDIKEPKVLFEGTASEAVKKF--PQNINVS--ATLSLASI----YP--AKVKIIADPNLDRNVH 216 (265) T ss_pred CHHHHCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHC--CCHHHHH--HHHHHHCC----CC--EEEEEEECCCCCCCEE T ss_conf 8689677866604673014677799825899999876--7527899--99986457----96--5999997799988569 Q ss_pred EEEEECCCCEEEEEEEEC----CHHHHHHHHHHHHHHHHCC Q ss_conf 999818995899999972----7376799999999998348 Q gi|254780279|r 222 SVVIAGEGESITLSHSAY----DRRIFARGSLTAALWAKSQ 258 (280) Q Consensus 222 ~V~f~~~~E~i~i~H~a~----~R~~Fa~Gal~aa~~l~~~ 258 (280) T Consensus 217 ~I~~~g~~g~~~~~i~n~p~~~NPkTS~laa~Svi~~l~~l 257 (265) T PRK13304 217 EITVKGSFGTFKTRVENVPCPDNPKTSALAAYSAIRLLKDL 257 (265) T ss_pred EEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 99999335169999966608899840899999999999840 |
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=74.49 Aligned_cols=241 Identities=15% Similarity=0.196 Sum_probs=125.5 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC- Q ss_conf 873799989987799999999838997899999648980204--55366608754675455685785213550476310- Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS- 80 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~- 80 (280) T Consensus 2 ~kiRaaIVGYGNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~va~~~~---------vy~V~~~~K~~~dvdv~iLC~gs 72 (326) T TIGR01921 2 SKIRAAIVGYGNLGKSVEEAIQQAPDMELVGVFRRRDAETLDVAEELA---------VYAVVEDEKELEDVDVLILCTGS 72 (326) T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCC---------HHHHHHHHHCCCCEEEEEECCCC T ss_conf 705788862232007999998408980489988707887576112252---------02222223202882599973886 Q ss_pred ----CCHHH----------------------HHHHH-HHHCCCEEEEEECCCCHHHHHHHHHHHC-----CCC-CEECCC Q ss_conf ----10247----------------------88876-4323721576502223135899987403-----555-210000 Q gi|254780279|r 81 ----PALTL----------------------QSLNI-SAQHNIVHIIGTTGFSVKENEVISSFAR-----NAP-IVKSSN 127 (280) Q Consensus 81 ----P~~~~----------------------~~~~~-a~~~g~~vViGTTG~~~e~~~~l~~~s~-----~~~-il~apN 127 (280) T Consensus 73 atd~pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~~g~VSvi-s~GWDPG~fSi~Rv~geA~lp~g~tyTfwGpG 151 (326) T TIGR01921 73 ATDLPEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKEAGAVSVI-SAGWDPGLFSINRVLGEAILPKGITYTFWGPG 151 (326) T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-EECCCCCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 45554345100122101236502242078999999999861987899-83478872679999999750168613323788 Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCCCHHHH----------------HHHHHHHHHCCCCCCCC Q ss_conf 115689999999999986115-6660089999864167899867899----------------99999985328876422 Q gi|254780279|r 128 MSLGINFLGFLVETAAEYLLP-AKDWDFEILEMHHRRKLDSPSGTAL----------------LLGEAIANGRKVNLTDH 190 (280) Q Consensus 128 ~SiGv~ll~~l~~~~a~~l~~-~~~~dieI~E~HH~~K~DaPSGTA~----------------~la~~i~~~~~~~~~~~ 190 (280) T Consensus 152 lS~GHsdAvrrIdGVk~Av~yTlP~~D--A~E~~R~GE~~~LTg~~~H~R~~~vvl~eG~~~e~ve~eI~t-~~~YFv~y 228 (326) T TIGR01921 152 LSQGHSDAVRRIDGVKAAVQYTLPIKD--ALEKVRRGEAEELTGKEIHRRECYVVLKEGAEFEKVEAEIKT-MADYFVEY 228 (326) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHCC-CCCCCCCC T ss_conf 664358988765667888641788578--889862688888875650015899973688783689998347-87765775 Q ss_pred CCCCC-------CCCCCCCCCCCCCCEEEECCCCCE--EEEEEEECCCCEEEEEEEE---CCHHHHHHHHHHHHHHHHC- Q ss_conf 11123-------576765433456501375288205--7999981899589999997---2737679999999999834- Q gi|254780279|r 191 MVLNR-------HIQQCARTEGSIGIASLRAGSIVG--EHSVVIAGEGESITLSHSA---YDRRIFARGSLTAALWAKS- 257 (280) Q Consensus 191 ~~~~~-------~~~~~~~~~~~I~i~s~R~g~~~g--~H~V~f~~~~E~i~i~H~a---~~R~~Fa~Gal~aa~~l~~- 257 (280) T Consensus 229 et~V~fi~e~~f~~~~tGM-P--HGg~vir~G~sG~~~~q~~Ef-------~lkl~~NP~fTa~vlva-~aRAa~rl~~A 297 (326) T TIGR01921 229 ETEVNFIDEVDFDLDHTGM-P--HGGFVIRKGESGKTQKQLLEF-------NLKLDRNPDFTASVLVA-YARAAYRLKEA 297 (326) T ss_pred CEEEEECCCHHHHHCCCCC-C--CCCEEEECCCCCCCCCEEEEE-------EEEECCCCCHHHHHHHH-HHHHHHHHHHC T ss_conf 0179850731212007898-8--575387105778754327889-------74124783424689999-99988888750 Q ss_pred CCCCCCCHHHH Q ss_conf 89983688898 Q gi|254780279|r 258 QIPGLYSMRDV 268 (280) Q Consensus 258 ~~~G~y~m~dv 268 (280) T Consensus 298 Gq~Ga~Tv~ev 308 (326) T TIGR01921 298 GQKGAYTVLEV 308 (326) T ss_pred CCCCCEEEEEE T ss_conf 66666168751 |
The enzyme from Corynebacterium glutamicum has been crystallized and characterised .. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=71.63 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=136.4 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHC--CCC--CCCCCCCCCHHHHHCCCCEEEEEEC Q ss_conf 737999899877999999998389978999996489802045536660--875--4675455685785213550476310 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFV--GIS--PMGIKFSDNLAMAIQSVDGIIDFSS 80 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~--~~~--~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280) T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~--~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389) T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCA--RIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEE-EEECCHHHHH--HHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECC T ss_conf 97289989866679999999857896299-9848888999--98753346631699425675889998725778999287 Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH Q ss_conf 10247888764323721576502223135899987403555--21000011568999999999998611-5666008999 Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGFLVETAAEYLL-PAKDWDFEIL 157 (280) Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~l~~~~a~~l~-~~~~~dieI~ 157 (280) T Consensus 78 ~~~~~~i~ka~i~~gv~yv--Dts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi--~nv~a~~a~~~~~~~i~--si~iy 151 (389) T COG1748 78 PFVDLTILKACIKTGVDYV--DTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGI--TNVLAAYAAKELFDEIE--SIDIY 151 (389) T ss_pred CHHHHHHHHHHHHHCCCEE--ECCCCCCHHHHHHHHHHHCCCEEECCCCCCCCH--HHHHHHHHHHHHHCCCC--EEEEE T ss_conf 0542999999998599889--754677506565489887490797166768645--79999999998616564--89999 Q ss_pred HHHHHCCCCCCCHHHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCCCEEEEEEEECCCCEE Q ss_conf 986416789986789999--999985328876422111235767654334565013752---882057999981899589 Q gi|254780279|r 158 EMHHRRKLDSPSGTALLL--GEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRA---GSIVGEHSVVIAGEGESI 232 (280) Q Consensus 158 E~HH~~K~DaPSGTA~~l--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~---g~~~g~H~V~f~~~~E~i 232 (280) T Consensus 152 ~g~~g~~~~~~l~ya~tws~e~~l~e~~~p-----~~~~~~G---k~--~~v~~~~~~~~~~~~~~G~~~~y~~~~~el~ 221 (389) T COG1748 152 VGGLGEHGDNPLGYATTWSPEINLREYTRP-----ARYWENG---KW--VEVDPLEEREVFEFPVIGYGDVYAFYHDELR 221 (389) T ss_pred EECCCCCCCCCCCCEEEECHHHHHHHHCCC-----EEEEECC---EE--EEECCCCCCCCCCCCCCCCEEEEECCCCCHH T ss_conf 825898988776532662578868975475-----5998478---79--9816656323324677873258953782277 Q ss_pred EEE------EEECCHHHHH-HHHHHHHHHHHCCCCCCCC Q ss_conf 999------9972737679-9999999998348998368 Q gi|254780279|r 233 TLS------HSAYDRRIFA-RGSLTAALWAKSQIPGLYS 264 (280) Q Consensus 233 ~i~------H~a~~R~~Fa-~Gal~aa~~l~~~~~G~y~ 264 (280) T Consensus 222 sL~~~i~~~~~~~~~~t~r~~g~~~~i~~L~--~lGll~ 258 (389) T COG1748 222 SLVKTIPGVVRTRFEMTFRYPGHLEVIKALR--DLGLLS 258 (389) T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--HCCCCC T ss_conf 7977575400046776048640999999998--757886 |
|
| >TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0084 Score=39.33 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=127.2 Q ss_pred EEEEEECCCHHHHHHHHHHHH--C--------------------CCCEEEEEEECCCCHHHCCCHHHHCCCCCC------ Q ss_conf 379998998779999999983--8--------------------997899999648980204553666087546------ Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHN--N--------------------PSITLHSIIVRSGSPLIGQDVGNFVGISPM------ 57 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~--~--------------------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~------ 57 (280) T Consensus 1 IrVaIvGvGncASslvqGieyyk~~~~~~~v~Glm~~~iggy~v~DIeiVaafDVD~~K-VGkdlseAi~~~pN~~~~~~ 79 (351) T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKK-VGFDLSDAIFASENNTIKIA 79 (351) T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-CCCCHHHHHHCCCCCCCCCC T ss_conf 95999913078999999999996389645667730022478674446999997327040-47769999740689864217 Q ss_pred -----CCCCC-----------------C------CHHHHHC--CCCEEEEEE---CCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf -----75455-----------------6------8578521--355047631---0102478887643237215765022 Q gi|254780279|r 58 -----GIKFS-----------------D------NLAMAIQ--SVDGIIDFS---SPALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 58 -----~v~i~-----------------~------dl~~~~~--~~DViIDFT---~P~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 80 dvp~~gv~V~~G~~lDG~~~~~~~~i~~~~~~~~Dvv~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~aFVN~iP~ 159 (351) T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPV 159 (351) T ss_pred CCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCH T ss_conf 88887988855687565344555056665335366999998628746897157686699999999889849817833541 Q ss_pred CCHHHHHHHHHHH-CCCCCEECC-CHHHHHHHHHHHHHHHHH----------HHCCCCCCH-HHHHHHHHHCCCCCCCHH Q ss_conf 2313589998740-355521000-011568999999999998----------611566600-899998641678998678 Q gi|254780279|r 105 FSVKENEVISSFA-RNAPIVKSS-NMSLGINFLGFLVETAAE----------YLLPAKDWD-FEILEMHHRRKLDSPSGT 171 (280) Q Consensus 105 ~~~e~~~~l~~~s-~~~~il~ap-N~SiGv~ll~~l~~~~a~----------~l~~~~~~d-ieI~E~HH~~K~DaPSGT 171 (280) T Consensus 160 fIAsdp~~~~~F~e~glpi~GDDiksq~GATi~hr~La~L~~~Rgv~v~~tyQlNiGGNtDFlnm~e~~Rl~sKk~-SKt 238 (351) T TIGR03450 160 FIASDPEWAKKFTDAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDFKNMLERDRLESKKI-SKT 238 (351) T ss_pred HCCCCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHCCHHHHHHCCC-HHH T ss_conf 0158989999999879978725301135616479999999997597565899973046506666454113432100-288 Q ss_pred HHHHHHHHHHHC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHHHHHH--- Q ss_conf 999999998532-88764221-1123576765433456501375288205799998189958999999727376799--- Q gi|254780279|r 172 ALLLGEAIANGR-KVNLTDHM-VLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFAR--- 246 (280) Q Consensus 172 A~~la~~i~~~~-~~~~~~~~-~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~Fa~--- 246 (280) T Consensus 239 ~aV-----~s~l~~~~l~~~~i~igPSdYv~~L~D~--K~~~i~iEg------~~Fgg~p~~le~~l~V~DSPnsAGvvI 305 (351) T TIGR03450 239 QAV-----TSNLPDRPLKDKNVHIGPSDHVGWLDDR--KWAYVRLEG------RAFGDVPLNLEYKLEVWDSPNSAGVII 305 (351) T ss_pred HHH-----HHHCCCCCCCCCCEEECCCCCCCCCCCC--EEEEEEEEE------EECCCCCEEEEEEEEEECCCHHHHHHH T ss_conf 999-----9751566577786578964567747893--599999986------764897679999999732714677899 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999998348 Q gi|254780279|r 247 GSLTAALWAKSQ 258 (280) Q Consensus 247 Gal~aa~~l~~~ 258 (280) T Consensus 306 DaiR~~KlA~dr 317 (351) T TIGR03450 306 DAVRAAKIAKDR 317 (351) T ss_pred HHHHHHHHHHHC T ss_conf 999999999866 |
This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid. |
| >COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.17 Score=30.38 Aligned_cols=253 Identities=13% Similarity=0.153 Sum_probs=131.0 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHC---------------------CCCEEEEEEECCCCHHHCCCHHHHCCCCCC-- Q ss_conf 998873799989987799999999838---------------------997899999648980204553666087546-- Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNN---------------------PSITLHSIIVRSGSPLIGQDVGNFVGISPM-- 57 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~---------------------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-- 57 (280) T Consensus 1 ~~~~~vrv~iiG~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~-~KVg~dl~Eai~~~~n~~ 79 (362) T COG1260 1 STTTMVRVAIIGVGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDA-RKVGKDLSEAIKAPPNVT 79 (362) T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCH-HHCCHHHHHHHHCCCCCC T ss_conf 9763588999842631888987789886268876624532330575756448997400127-553934999971677897 Q ss_pred ----------CCCCC---------CCHHHHHC--------------------CCCEEEEEEC---CCHHHHHHHHHHHCC Q ss_conf ----------75455---------68578521--------------------3550476310---102478887643237 Q gi|254780279|r 58 ----------GIKFS---------DNLAMAIQ--------------------SVDGIIDFSS---PALTLQSLNISAQHN 95 (280) Q Consensus 58 ----------~v~i~---------~dl~~~~~--------------------~~DViIDFT~---P~~~~~~~~~a~~~g 95 (280) T Consensus 80 ~~~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG 159 (362) T COG1260 80 SKIAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAG 159 (362) T ss_pred CEECCCCCCCCCEECCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 33205666679675356776764410555311232023356445035741467413135566222678999999999749 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHH---HHHHHHHHHHHHHHH----------HHCCCCCCHH-HHHHHHH Q ss_conf 2157650222313589998740355521000011---568999999999998----------6115666008-9999864 Q gi|254780279|r 96 IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS---LGINFLGFLVETAAE----------YLLPAKDWDF-EILEMHH 161 (280) Q Consensus 96 ~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~S---iGv~ll~~l~~~~a~----------~l~~~~~~di-eI~E~HH 161 (280) T Consensus 160 ~afvN~~P~~iA~d-P~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~NigGN~Dflnl~~r~r 238 (362) T COG1260 160 VAFVNAIPVFIASD-PAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGGNTDFLNLLARER 238 (362) T ss_pred CCEECCCCCCCCCC-HHHHHHHHHCCCCEECCCHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCHHH T ss_conf 84030557623489-89999998759955556315422772208999999997496051589871377717777456345 Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECC Q ss_conf 16789986789999999985328876422111-23576765433456501375288205799998189958999999727 Q gi|254780279|r 162 RRKLDSPSGTALLLGEAIANGRKVNLTDHMVL-NRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD 240 (280) Q Consensus 162 ~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~ 240 (280) T Consensus 239 ~~SKk~-SKts~-----V~sil~~~~~~~~~~I~ps~yv~~L~D~--K~a~~~i------e~~~F~g~~~~l~~~l~v~D 304 (362) T COG1260 239 LESKKI-SKTSA-----VTSILGYKLGDKPIHIGPSDYVEPLGDR--KVAYMRI------EGKLFGGVPMNLEIKLEVED 304 (362) T ss_pred HHHHHH-HHHHH-----HHHHHCCCCCCCCEEECCCCCCCCCCCC--EEEEEEE------EEEECCCCCEEEEEEEEEEC T ss_conf 555242-27899-----9998544245787577723356525774--4899999------75433887358999988605 Q ss_pred HHHHH---HHHHHHHHHHHCCCCC--CCCHHHHH Q ss_conf 37679---9999999998348998--36888982 Q gi|254780279|r 241 RRIFA---RGSLTAALWAKSQIPG--LYSMRDVL 269 (280) Q Consensus 241 R~~Fa---~Gal~aa~~l~~~~~G--~y~m~dvL 269 (280) T Consensus 305 SpnsagliiD~vR~~k~a~drGi~G~v~~~say~ 338 (362) T COG1260 305 SPNSAGLIIDLVRLAKLALDRGIGGPVYEVSAYF 338 (362) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH T ss_conf 6024678999999999998657786233126655 |
|
| >pfam05173 DapB_C Dihydrodipicolinate reductase, C-terminus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=307.74 Aligned_cols=136 Identities=50% Similarity=0.780 Sum_probs=125.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 68999999999998611566600899998641678998678999999998532887642211123576765433456501 Q gi|254780279|r 131 GINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIA 210 (280) Q Consensus 131 Gv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~ 210 (280) T Consensus 1 Gvnll~~l~~~aa~~l~--~~~dieI~E~HH~~K~DaPSGTAl~la~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~I~i~ 77 (137) T pfam05173 1 GVNLLMKLAEEAAKYLG--DDYDIEIIEIHHRQKKDAPSGTALKLAEAIAEARGEALEVVAD-EREGGTRGRSVNEIGIH 77 (137) T ss_pred CHHHHHHHHHHHHHHCC--CCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCEEE T ss_conf 98999999999998558--6488898688335899998789999999999863524444532-22455578877860389 Q ss_pred EEECCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHH Q ss_conf 375288205799998189958999999727376799999999998348-99836888982 Q gi|254780279|r 211 SLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLTAALWAKSQ-IPGLYSMRDVL 269 (280) Q Consensus 211 s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~-~~G~y~m~dvL 269 (280) T Consensus 78 s~R~g~i~g~H~V~f~~~~E~i~i~H~A~~R~~Fa~Gal~Aa~wl~~~k~~G~y~m~dvL 137 (137) T pfam05173 78 SVRGGGVVGEHEVIFGGDGERIEITHDAHSREIFAPGALLAAEWLAGKKLPGLYGMEDVL 137 (137) T ss_pred EEECCCCCEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEECHHHCC T ss_conf 996378415799999328828999999588888799999999999569998684022329 |
Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The C-terminal domain of DapB has been proposed to be the substrate- binding domain. |
| >pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=225.61 Aligned_cols=121 Identities=36% Similarity=0.666 Sum_probs=115.5 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~DVvIDFS~p~~~ 78 (122) T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL--GVPVTDDLEEVLADADVLIDFTTPEAT 78 (122) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC--CCEECCCHHHHCCCCCEEEEECCHHHH T ss_conf 989998898878999999998589968999994389612254310014678--711124477751578889990687899 Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCH Q ss_conf 78887643237215765022231358999874035552100001 Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 79 ~~~~~~~~~~~~~~ViGTTG~s~~~~~~i~~~a~~ipi~~apNF 122 (122) T pfam01113 79 LENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPIVIAPNF 122 (122) T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCC T ss_conf 99999999679988998999999999999998445988982799 |
Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=86.56 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=88.4 Q ss_pred CC-CCCEEEEEECCCHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE Q ss_conf 99-887379998998779999999983-8997899999648980204553666087546754556857852135504763 Q gi|254780279|r 1 MH-QSPMRISVLGGGRMGQALIKEIHN-NPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280) Q Consensus 1 M~-~~~IkV~I~GaGkMG~~ii~~i~~-~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280) T Consensus 1 ~~~~~kmrVgliG~GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~--~~~~~~--~--~~~~~~~~~~l~~~~DlVVE~ 74 (271) T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA--DFIWGL--R--RPPPVVPLDQLATHADIVVEA 74 (271) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH--HHHHHC--C--CCCCCCCHHHHHHCCCEEEEC T ss_conf 9976667799988678999999999758998189999928878889--998735--8--987407889960189999989 Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC-CCCEECCCHHHH Q ss_conf 10102478887643237215765022231358999874035-552100001156 Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN-APIVKSSNMSLG 131 (280) Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~-~~il~apN~SiG 131 (280) T Consensus 75 A~~~av~~~~~~~L~~G~dlvv~SvGALad~-~~l~~~A~~~g~~i~ipsGAig 127 (271) T PRK13302 75 APASVLRAIVEPVLAAGKKAIVLSVGALLRN-EDLIDLARQNGGQIIVPTGALL 127 (271) T ss_pred CCHHHHHHHHHHHHHCCCCEEEECHHHHCCC-HHHHHHHHHCCCEEEEECCHHH T ss_conf 8989999999999975997899755795692-9999999966985998070343 |
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=82.76 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=90.6 Q ss_pred CCCCCEEEEEECCCHHHHH-HHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEE Q ss_conf 9988737999899877999-999998389978999996489802045536660875467545568578521--3550476 Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQA-LIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIID 77 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~-ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViID 77 (280) T Consensus 1 M~~-~irvgiiG~G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~---------~a~~~~~~~~~~~~~ll~~~~id~V~i 70 (346) T PRK11579 1 MSD-KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDETKV---------KADWPTVTVVSEPKHLFNDPNIDLIVI 70 (346) T ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHH---------HCCCCCCCEECCHHHHHCCCCCCEEEE T ss_conf 998-8759999362999999999996299919999979899999---------502589953899999945999999999 Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECCCH Q ss_conf 3101024788876432372157650-22231358999874035552100001 Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 71 ~tp~~~H~~~~~~al~aGkhv~~EKP~a~~~~~a~~l~~~a~~~g~~l~v~~ 122 (346) T PRK11579 71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFH 122 (346) T ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 7996789999999998799489538767879999999999987296799965 |
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=84.95 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=97.2 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------C---------CCHHHHCC-CCCCCCCCCCCHH Q ss_conf 887379998998779999999983899789999964898020------4---------55366608-7546754556857 Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------G---------QDVGNFVG-ISPMGIKFSDNLA 66 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g---------~d~~~~~~-~~~~~v~i~~dl~ 66 (280) T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~ 94 (438) T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAE 94 (438) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHH T ss_conf 99559987545411067999875068836999842464278899987358720000111166788998628679826535 Q ss_pred HHHC--CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf 8521--355047631-0102478887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 67 MAIQ--SVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 67 ~~~~--~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 95 ~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~ 174 (438) T COG4091 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFAS 174 (438) T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECEEECHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHH T ss_conf 43238860499976788530147579998567728999754032534889987765475885467897177878999998 |
|
| >pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=75.62 Aligned_cols=115 Identities=14% Similarity=0.290 Sum_probs=87.8 Q ss_pred EEEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCC Q ss_conf 37999899877999999998-389978999996489802045536660875467545568578521--355047631010 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIH-NNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPA 82 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~-~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~ 82 (280) T Consensus 1 iki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~~iD~v~I~tp~~ 73 (120) T pfam01408 1 LRVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARA--EAVAE-----SFGVPAYSDLEELLADPDVDAVSVATPPG 73 (120) T ss_pred CEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH--HHHHH-----HHCCCEECCHHHHHHCCCCCEEEECCCHH T ss_conf 989999077999999999985599978999982999999--99999-----83996788699997377889899908746 Q ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECCC Q ss_conf 24788876432372157650-2223135899987403555210000 Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSSN 127 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~apN 127 (280) T Consensus 74 ~H~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (120) T pfam01408 74 LHFELALAALEAGKHVLVEKPLATTVEEAKELVELAEKKGVRLSVG 119 (120) T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 1899999999819989996898199999999999999829969995 |
This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=74.89 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=93.4 Q ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 3799989987799999999838-997899999648980204553666087546754556857852135504763101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~--~~-----~~~~~~~s~ide~~~~~DlvVEaAS~~Av 73 (255) T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL--EA-----SVGRRCVSDIDELIAEVDLVVEAASPEAV 73 (255) T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH--HH-----HCCCCCCCCHHHHHHCCCEEEEECCHHHH T ss_conf 957898233788999999866886436999944887888888--86-----03887635677773024425430788999 Q ss_pred HHHHHHHHHCCCEEEEEECCC-CHHH-HHHHHHHHCCCC-CEECCCHHHHH Q ss_conf 788876432372157650222-3135-899987403555-21000011568 Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGF-SVKE-NEVISSFARNAP-IVKSSNMSLGI 132 (280) Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~-~~e~-~~~l~~~s~~~~-il~apN~SiGv 132 (280) T Consensus 74 ~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255) T COG1712 74 REYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255) T ss_pred HHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHH T ss_conf 998699996599889995122068679999999985389479933764012 |
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=74.74 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=90.9 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-----CCEEEEEEECCCCHHHCCCHHHHCCCCCC--------CC-CCCCCHHHHHC Q ss_conf 737999899877999999998389-----97899999648980204553666087546--------75-45568578521 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-----SITLHSIIVRSGSPLIGQDVGNFVGISPM--------GI-KFSDNLAMAIQ 70 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-----~~eLv~~i~~~~~~~~g~d~~~~~~~~~~--------~v-~i~~dl~~~~~ 70 (280) T Consensus 2 ~i~I~l~G~G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (316) T PRK08374 2 EVKVSLFGFGTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEIVE 81 (316) T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHC T ss_conf 51299993388999999999971887298659999995567634565556655533202543445530120489899834 Q ss_pred --CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC--EECCCHHHHHHHH Q ss_conf --3550476310102478887643237215765022231358999874035552--1000011568999 Q gi|254780279|r 71 --SVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI--VKSSNMSLGINFL 135 (280) Q Consensus 71 --~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i--l~apN~SiGv~ll 135 (280) T Consensus 82 ~~~~dvvVd~t~~~~~~~~~~~al~~G~hVVTANK~~lA~~~~eL~~~A~~~~~~~~yEasVggGiPiI 150 (316) T PRK08374 82 EVDPDIVVDVSSWDEAHEWYLTALKEGKSVVTSNKPPIANHYDELLNEANERNLGYFFEATVMAGTPII 150 (316) T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCH T ss_conf 889998998799969999999999889929978869998519999999997498499953400020316 |
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=70.32 Aligned_cols=126 Identities=13% Similarity=0.240 Sum_probs=91.6 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC---------CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CC Q ss_conf 8737999899877999999998389---------978999996489802045536660875467545568578521--35 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNP---------SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SV 72 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~---------~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~ 72 (280) T Consensus 2 ~~ikIgl~G~GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k~r~~~~--------~~~~~t~d~~~i~~d~~i 73 (432) T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL--------SGYLLTTDPEELVNDPDI 73 (432) T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--------CCCEEECCHHHHHCCCCC T ss_conf 553899998780699999999980999999869976999999689753558999--------855554799999438999 Q ss_pred CEEEEEEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHH Q ss_conf 50476310-10247888764323721576502223135899987403555--2100001156899999 Q gi|254780279|r 73 DGIIDFSS-PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGF 137 (280) Q Consensus 73 DViIDFT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~ 137 (280) T Consensus 74 divVEliGG~~~A~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~fEAaV~GGIPiI~~ 141 (432) T PRK06349 74 DIVVELMGGIEPARELILAALEAGKHVVTANKALLAVHGNELFAAAEEKGVDLYFEAAVAGGIPIIKA 141 (432) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH T ss_conf 89999669950799999999985996892587999867999999998719649996322466120699 |
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-07 Score=69.12 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=87.3 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC---------CCEEEEEEECCCCHH--HCCCHHHHCCCCC-------C-CCCCCCCH Q ss_conf 737999899877999999998389---------978999996489802--0455366608754-------6-75455685 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP---------SITLHSIIVRSGSPL--IGQDVGNFVGISP-------M-GIKFSDNL 65 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~---------~~eLv~~i~~~~~~~--~g~d~~~~~~~~~-------~-~v~i~~dl 65 (280) T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (342) T PRK06270 2 EMKIALVGFGGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEIDG 81 (342) T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 63199987688999999999987999999849978999999165433576678989998766411650003200012789 Q ss_pred HHHHC--CCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHH Q ss_conf 78521--35504763101-----0247888764323721576502223135899987403555--210000115689999 Q gi|254780279|r 66 AMAIQ--SVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLG 136 (280) Q Consensus 66 ~~~~~--~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~ 136 (280) T Consensus 82 ~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~VVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGlPiI~ 161 (342) T PRK06270 82 LEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKENGVCFRYEATVGGAMPIIR 161 (342) T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH T ss_conf 99842779998999304467774889999999997799499988717898899999999972984998544111535389 |
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=65.54 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=88.9 Q ss_pred CCEEEEEECCC-HHHHHHHHHHHHCCC-CEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE Q ss_conf 87379998998-779999999983899-789999964898020455366608754675455685785213--55047631 Q gi|254780279|r 4 SPMRISVLGGG-RMGQALIKEIHNNPS-ITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280) Q Consensus 4 ~~IkV~I~GaG-kMG~~ii~~i~~~~~-~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280) T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~--a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iat 75 (342) T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPER--AEAFAEEFGIA----KAYTDLEELLADPDIDAVYIAT 75 (342) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH--HHHHHHHCCCC----CCCCCHHHHHCCCCCCEEEEEC T ss_conf 93279998987678888899997388746999996499899--99999981997----4529999994599998899969 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCC--CEECCCHHHH Q ss_conf 01024788876432372157650-2223135899987403555--2100001156 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAP--IVKSSNMSLG 131 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~--il~apN~SiG 131 (280) T Consensus 76 p~~~H~~~a~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~Rf~ 130 (342) T COG0673 76 PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFD 130 (342) T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHCC T ss_conf 8067799999999779969992899899999999999999759949998846549 |
|
| >pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=68.95 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=82.3 Q ss_pred CCCHHHHHHHHHHHHCC---CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCCHHHH Q ss_conf 99877999999998389---978999996489802045536660875467545568578521--3550476310102478 Q gi|254780279|r 12 GGGRMGQALIKEIHNNP---SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPALTLQ 86 (280) Q Consensus 12 GaGkMG~~ii~~i~~~~---~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~~~~~ 86 (280) T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~-------~~~~~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~ 73 (116) T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKAR-------AALLGDEPVTLDLDDLVADPRPDVVVECASSEAVAE 73 (116) T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCC-------CCCCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHH T ss_conf 9870289999999949203567999998478343232-------124666715779999961889989998899489999 Q ss_pred HHHHHHHCCCEEEEEECCCCHH--HHHHHHHHHCCCCC Q ss_conf 8876432372157650222313--58999874035552 Q gi|254780279|r 87 SLNISAQHNIVHIIGTTGFSVK--ENEVISSFARNAPI 122 (280) Q Consensus 87 ~~~~a~~~g~~vViGTTG~~~e--~~~~l~~~s~~~~i 122 (280) T Consensus 74 ~~~~aL~~GkhVVTaNK~~lA~~~~~~eL~~~A~~~g~ 111 (116) T pfam03447 74 YVLKALKAGKHVVTASKGALADLALRERLREAAEASGV 111 (116) T ss_pred HHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHHHCCC T ss_conf 99999987998999078896785799999999998399 |
This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=67.02 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=83.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEECC Q ss_conf 73799989987799999999838--9978999996489802045536660875467545568578521-35504763101 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFSSP 81 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT~P 81 (280) T Consensus 2 ~~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~~~------~~~~~~---~~~~~~~~~~~~lla~~pDlVvE~As~ 72 (267) T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA------DLPPAL---AGRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCHH------HHHHHH---CCCCCCCCCHHHHHCCCCCEEEECCCH T ss_conf 51799985169999999998617776528999815335------555553---256654577577741289999989798 Q ss_pred CHHHHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHH-HHHH Q ss_conf 02478887643237215765022-23135-899987403555-2100001156-8999 Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLG-INFL 135 (280) Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiG-v~ll 135 (280) T Consensus 73 ~Av~~~a~~vL~~G~dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ipsGAIgGlD~l 130 (267) T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYL 130 (267) T ss_pred HHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHCHHHH T ss_conf 9999999999975996999823784798899999999997798699747301046899 |
|
| >PRK10206 putative dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=64.63 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=81.5 Q ss_pred CEEEEEECCCHHHHHH-HHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEECC Q ss_conf 7379998998779999-999983899789999964898020455366608754675455685785213--5504763101 Q gi|254780279|r 5 PMRISVLGGGRMGQAL-IKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSSP 81 (280) Q Consensus 5 ~IkV~I~GaGkMG~~i-i~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~P 81 (280) T Consensus 2 ~irvaiiG~G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~-~~~~a~-----~~~~~~~~~~~~~ll~~~~id~V~i~tP~ 75 (345) T PRK10206 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK-PEEQAP-----IYSHIHFTSDLDEVLNDPDVKLVVVCTHA 75 (345) T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHH-HHHHHH-----HCCCCCEECCHHHHHCCCCCCEEEECCCC T ss_conf 247999926499999989999638995799999788761-888887-----76998122899999549999999987995 Q ss_pred CHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECC Q ss_conf 024788876432372157650-222313589998740355521000 Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSS 126 (280) Q Consensus 82 ~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~ap 126 (280) T Consensus 76 ~~H~~~a~~al~aGkhV~~EKP~~~~~~ea~~l~~~a~~~g~~l~v 121 (345) T PRK10206 76 DSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTP 121 (345) T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 7899999999978992898036649899999999999970997999 |
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.9e-07 Score=66.24 Aligned_cols=114 Identities=19% Similarity=0.305 Sum_probs=88.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCC Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521--355047631010 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPA 82 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~ 82 (280) T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~-ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~ 80 (350) T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSA-AKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS 80 (350) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCH T ss_conf 730589625557799999997088971689995174-0013017876488885168652322200026663156102612 Q ss_pred HHHHHHHHHHHCCCEEEE-EEC-----CCCHHHHHHHHHHHCCCC Q ss_conf 247888764323721576-502-----223135899987403555 Q gi|254780279|r 83 LTLQSLNISAQHNIVHII-GTT-----GFSVKENEVISSFARNAP 121 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vVi-GTT-----G~~~e~~~~l~~~s~~~~ 121 (280) T Consensus 81 --~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraG 123 (350) T COG3804 81 --VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAG 123 (350) T ss_pred --HHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHHHHCC T ss_conf --9999999975870661585334778679678655578998538 |
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=65.48 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=84.9 Q ss_pred CEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCH--HHCCCHHHHCCCCCCCCCCC----CCHHHHH Q ss_conf 73799989987799999999838---------997899999648980--20455366608754675455----6857852 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSP--LIGQDVGNFVGISPMGIKFS----DNLAMAI 69 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~--~~g~d~~~~~~~~~~~v~i~----~dl~~~~ 69 (280) T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (341) T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEERA 81 (341) T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHHHH T ss_conf 60299995388999999999999999999749977999999686011376688878987503530235555542346663 Q ss_pred ---CCCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC--CCEECCCHHHHHHHH Q ss_conf ---135504763101-----024788876432372157650222313589998740355--521000011568999 Q gi|254780279|r 70 ---QSVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA--PIVKSSNMSLGINFL 135 (280) Q Consensus 70 ---~~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~--~il~apN~SiGv~ll 135 (280) T Consensus 82 ~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~VVTANK~~la~~~~el~~la~~~~~~~~yEasVggGiPiI 157 (341) T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL 157 (341) T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHH T ss_conf 0355676699911221357645899999999729968932747777539999999997399189970401140252 |
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=63.88 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=86.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCC-------CCEEEEEEECCCCHH--HCCCHHHHCCCCCCCCCCCC-----CHHHHH-C Q ss_conf 37999899877999999998389-------978999996489802--04553666087546754556-----857852-1 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNP-------SITLHSIIVRSGSPL--IGQDVGNFVGISPMGIKFSD-----NLAMAI-Q 70 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~-------~~eLv~~i~~~~~~~--~g~d~~~~~~~~~~~v~i~~-----dl~~~~-~ 70 (280) T Consensus 1 i~I~l~G~G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (326) T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326) T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHHCC T ss_conf 97999957889999999999749999848993799999610101465688988852122323444442000444566456 Q ss_pred CCCEEEEEECC--CH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHHHHH Q ss_conf 35504763101--02--47888764323721576502223135899987403555--2100001156899999999 Q gi|254780279|r 71 SVDGIIDFSSP--AL--TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGFLVE 140 (280) Q Consensus 71 ~~DViIDFT~P--~~--~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~l~~ 140 (280) T Consensus 81 ~~dvive~~~~~~~g~~~~~~~~~aL~~GkhVVTANK~~la~~~~eL~~lA~~~~~~~~yEAsV~gGiPii-~~l~ 155 (326) T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLF-SLRD 155 (326) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHH-HHHH T ss_conf 89879993027754422699999999879969977960666619999999998098499975403662317-9888 |
|
| >pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=63.96 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=78.7 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----CCCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEE Q ss_conf 379998998779999999983899789999964898020-----45536660875-467545568578521355047631 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI-----GQDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFS 79 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~-----g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT 79 (280) T Consensus 1 kKI~IiGaG~wGtAla~~la~n~-~~-V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiav 78 (159) T pfam01210 1 KKIAVLGAGSWGTALAKVLARNG-HE-VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAV 78 (159) T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CE-EEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEEC T ss_conf 98999996999999999999879-98-99999043666778866978210478645553054288999983798999917 Q ss_pred CCCHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHC------CCCCEECCCHHHHHH Q ss_conf 010247888764---323721576502223135899987403------555210000115689 Q gi|254780279|r 80 SPALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFAR------NAPIVKSSNMSLGIN 133 (280) Q Consensus 80 ~P~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~------~~~il~apN~SiGv~ 133 (280) T Consensus 79 ps~~~~~~~~~i~~~~~~~~~iv~~sKGie~~t~~~~s~i~~~~~~~~~~~vlsGPs~A~Ev~ 141 (159) T pfam01210 79 PSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEIIEEELPINPIAVLSGPSHAEEVA 141 (159) T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHH T ss_conf 488999999999865576556888751442788752999999878998739995786499997 |
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=62.94 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=85.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HC---CCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEE Q ss_conf 737999899877999999998389978999996489802--04---5536660875-46754556857852135504763 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IG---QDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDF 78 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g---~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDF 78 (280) T Consensus 1 MmkI~ViGaGawGtAlA~~la~n~-~~V~-lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~ii-i 77 (325) T PRK00094 1 MMKIAVLGAGSWGTALAILLARNG-HDVV-LWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLIL-V 77 (325) T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEE-E T ss_conf 988999898999999999999789-9789-998389999999964988656897858998389789999983798499-9 Q ss_pred ECCCH-HHHHHHHH---HHCCCEEEEEECCCCHHHHH----HHHHHH-CC--CCCEECCCHHHHHHH-----------HH Q ss_conf 10102-47888764---32372157650222313589----998740-35--552100001156899-----------99 Q gi|254780279|r 79 SSPAL-TLQSLNIS---AQHNIVHIIGTTGFSVKENE----VISSFA-RN--APIVKSSNMSLGINF-----------LG 136 (280) Q Consensus 79 T~P~~-~~~~~~~a---~~~g~~vViGTTG~~~e~~~----~l~~~s-~~--~~il~apN~SiGv~l-----------l~ 136 (280) T Consensus 78 avPs~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~seii~~~l~~~~~~~~lsGP~~A~Eva~~~pt~~vias~~~ 157 (325) T PRK00094 78 AVPSHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSEVAEEELPDQAPLAVLSGPSFAKEVAQGLPTALVIASTDE 157 (325) T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCH T ss_conf 45769999999999864689974999765562488751999999973999867998177429999808983999507999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998611 Q gi|254780279|r 137 FLVETAAEYLL 147 (280) Q Consensus 137 ~l~~~~a~~l~ 147 (280) T Consensus 158 ~~~~~~~~lf~ 168 (325) T PRK00094 158 ELAKEVQQLFH 168 (325) T ss_pred HHHHHHHHHHC T ss_conf 99999999967 |
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-06 Score=61.57 Aligned_cols=133 Identities=11% Similarity=0.151 Sum_probs=84.8 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH-HCCCC Q ss_conf 873799989987799999999838---------99789999964898020455366608754675455685785-21355 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA-IQSVD 73 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~-~~~~D 73 (280) T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d 80 (333) T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-EVWTTDGALSLGDEVLLDEDID 80 (333) T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCH-HHHEECCCCCCCHHHHCCCCCC T ss_conf 548999983371429999999982688876328726999999615301135665332-3430055324427665045688 Q ss_pred EEEEEECC--CHHH--HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHH Q ss_conf 04763101--0247--888764323721576502223135899987403555--2100001156899999 Q gi|254780279|r 74 GIIDFSSP--ALTL--QSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGF 137 (280) Q Consensus 74 ViIDFT~P--~~~~--~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~ 137 (280) T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~ 150 (333) T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL 150 (333) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHH T ss_conf 7985576668741238999999975996997896476766999999999739858998550257543789 |
|
| >KOG2741 consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=58.81 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=92.5 Q ss_pred CCC-CCEEEEEECCCHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEE Q ss_conf 998-8737999899877999999998389--9789999964898020455366608754675455685785213--5504 Q gi|254780279|r 1 MHQ-SPMRISVLGGGRMGQALIKEIHNNP--SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGI 75 (280) Q Consensus 1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~--~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DVi 75 (280) T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~--A~~fAq~~~~~--~~k~y~syEeLakd~~vDvV 76 (351) T KOG2741 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLER--AKEFAQRHNIP--NPKAYGSYEELAKDPEVDVV 76 (351) T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH--HHHHHHHCCCC--CCCCCCCHHHHHCCCCCCEE T ss_conf 998860589886046778999997214754582799996552788--99999865999--87425579988249876879 Q ss_pred EEEECCCHH-HHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEEC----CCHHHHHHHHHHHHH Q ss_conf 763101024-788876432372157650-22231358999874035552100----001156899999999 Q gi|254780279|r 76 IDFSSPALT-LQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKS----SNMSLGINFLGFLVE 140 (280) Q Consensus 76 IDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~a----pN~SiGv~ll~~l~~ 140 (280) T Consensus 77 y-i~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~ 146 (351) T KOG2741 77 Y-ISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS 146 (351) T ss_pred E-ECCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHH T ss_conf 9-679980089999999975995786565538899999999999976948876444210738999999971 |
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=57.79 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=75.3 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE Q ss_conf 998873799989987799999999838997--899999648980204553666087546754556857852135504763 Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280) T Consensus 1 M~k---kI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~--~~~-----~~~~~~~~~~~~~e~~~~~Dii~La 70 (272) T PRK12491 1 MNK---QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNL--KNA-----SDKYGITITTNNNEVANSADILILS 70 (272) T ss_pred CCC---EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH--HHH-----HHHCCCEEECCHHHHHHHCCEEEEE T ss_conf 998---699985679999999999978898967699969799999--999-----9971978866879997319999999 Q ss_pred ECCCHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH Q ss_conf 1010247888764---3237215765022231358999874035552100-00115 Q gi|254780279|r 79 SSPALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280) Q Consensus 79 T~P~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280) T Consensus 71 VKP~~~~~vl~~l~~~~~~~~lviSi~AGi~i~~l~--~~l~~~~~vvR~MPN~~a 124 (272) T PRK12491 71 IKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE--NEFDRKLKVIRVMPNTPV 124 (272) T ss_pred ECHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHHCCCCCEEEECCCHHH T ss_conf 577899999999865526991899984899989999--981899857997897699 |
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=58.34 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=77.5 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC Q ss_conf 873799989987799999999838997--899999648980204553666087546754556857852135504763101 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280) T Consensus 2 ~mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~----~~l--~~~~~v~~~~~~~~~~~~~diI~LaVKP 75 (279) T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRL----QEL--HQKYGVKGTHNKKELLTDANILFLAMKP 75 (279) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH----HHH--HHHHCCEEECCHHHHHHHCCEEEEECCH T ss_conf 9788999876899999999999787999757999789849999----999--9971966637779998449999995278 Q ss_pred CHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHHH Q ss_conf 0247888764---3237215765022231358999874035552100-00115689 Q gi|254780279|r 82 ALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGIN 133 (280) Q Consensus 82 ~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv~ 133 (280) T Consensus 76 ~~~~~v~~~i~~~~~~~~~iISi~AGi~~~~l~~~--l~~~~~ivR~MPN~~~~vg 129 (279) T PRK07679 76 KDVAEALTPFKEYIHNNVLIISLLAGVSTHSIRNL--LQKDVPIIRAMPNTSAAIL 129 (279) T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH--CCCCCCEEEECCCHHHHHH T ss_conf 99999999987545899299997478889999975--2999857983597678850 |
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=57.50 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=76.3 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE Q ss_conf 998873799989987799999999838997--899999648980204553666087546754556857852135504763 Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280) T Consensus 1 m~~-~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~-~~l~-----~~~~i~~~~~~~~~~~~~d~Iila 73 (245) T PRK07634 1 MLT-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL-DQLQ-----ARYNVSTTTDWKQHVTSVDTIVLA 73 (245) T ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHH-----HHCCCEECCCHHHHHHHCCEEEEE T ss_conf 999-991999875899999999999779999605999699999999-9999-----971974227779998559999999 Q ss_pred ECCCHHHHHHHHHH--HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH Q ss_conf 10102478887643--237215765022231358999874035552100-00115 Q gi|254780279|r 79 SSPALTLQSLNISA--QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280) Q Consensus 79 T~P~~~~~~~~~a~--~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280) T Consensus 74 vKP~~~~~vl~~i~~~~~~~~iISi~AGi~i~~l~~--~l~~~~~v~R~MPN~~~ 126 (245) T PRK07634 74 MPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE--RLPKGTPVAWIMPNTAA 126 (245) T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH--HCCCCCEEEEECCCHHH T ss_conf 891749999999877606988999817998999998--74899728994585748 |
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=58.03 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=77.1 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 737999899877999999998389-9789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 2 m~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~--~~l~-----~~~~v~~~~~~~~~~~~~diIiLaVKP~~ 74 (267) T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKR--AALA-----EEYGVRAATDNQEAAQEADVVVLAVKPQV 74 (267) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHH--HHHH-----HHHCCEEECCHHHHHHCCCEEEEEECHHH T ss_conf 9879998668999999999997798945289977999999--9999-----97396785786988721999999728789 Q ss_pred HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHHH Q ss_conf 47888764323-7215765022231358999874035552100-00115689 Q gi|254780279|r 84 TLQSLNISAQH-NIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGIN 133 (280) Q Consensus 84 ~~~~~~~a~~~-g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv~ 133 (280) T Consensus 75 ~~~vl~~l~~~~~~~iISv~AGi~i~~l~~~--l~~~~~ivR~MPN~~~~v~ 124 (267) T PRK11880 75 MEDVLSELKGSLDKLVVSIAAGITLARLERA--LGADLPVVRAMPNTPALVG 124 (267) T ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHH--HCCCCHHHHCCCCHHHHHC T ss_conf 9999999876508789991699999999988--6368703420874899970 |
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=58.17 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=75.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 3799989987799999999838997--89999964898020455366608754675455685785213550476310102 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~------~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~ 74 (273) T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAY------HIKEKYPSIHVAKTIEEVIEQSELIFICVKPLD 74 (273) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH------HHHHHCCCEEEECCHHHHHHCCCEEEEECCHHH T ss_conf 98999876999999999999779989456999889989999------999876990886888999840998999648888 Q ss_pred HHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH Q ss_conf 478887643---237215765022231358999874035552100-00115 Q gi|254780279|r 84 TLQSLNISA---QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280) Q Consensus 84 ~~~~~~~a~---~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280) T Consensus 75 ~~~vl~~i~~~~~~~~~iISi~AGisi~~l~~~~~----~~vvR~MPN~~~ 121 (273) T PRK07680 75 IYPLLKKLAPHFSDEKCLVSITSPISPEQLETLVP----CQVARIIPSITN 121 (273) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC----CCCEEEECCCCH T ss_conf 99999998863478848999558888999997479----981588678860 |
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=57.38 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=67.5 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCC------CCC--CCCCCCCCHHHHHCCCCE Q ss_conf 8737999899-8779999999983899789999964898020455366608------754--675455685785213550 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVG------ISP--MGIKFSDNLAMAIQSVDG 74 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~------~~~--~~v~i~~dl~~~~~~~DV 74 (280) T Consensus 2 ~kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~--~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~Dv 79 (350) T PRK08664 2 DKLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASER--SAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPVDVDDVDI 79 (350) T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCE T ss_conf 97779998984299999999997099966899996553--3788415520322346676444650798688457438999 Q ss_pred EEEEECCC-HHHHHHHHHHHCCCEEEEEECCC Q ss_conf 47631010-24788876432372157650222 Q gi|254780279|r 75 IIDFSSPA-LTLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 75 iIDFT~P~-~~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 80 vF~A-lPhg~s~~~~~~l~~~g~~VIDlSadf 110 (350) T PRK08664 80 VFSA-LPSDVAAEVEEEFAKAGKPVFSNASAH 110 (350) T ss_pred EEEC-CCCHHHHHHHHHHHHCCCEEEECCHHH T ss_conf 9998-982699999999987798899786220 |
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-06 Score=60.02 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=81.8 Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE Q ss_conf 9988737999899-877999999998389978999996489802045536660875467545568578521355047631 Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280) Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280) T Consensus 1 m~~k~~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~----~~~~~~~v~~~~~~~~~~~Divf~a~ 76 (347) T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ----FKGREIIIQEAKINSFEGVDIAFFSA 76 (347) T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEE----ECCCEEEEEECCHHHHHCCCEEEECC T ss_conf 99888779999880399999999997278987510799865877997626----89927899857844651697899768 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCCCEECCCHHHHH Q ss_conf 010247888764323721576502223135----------89998740355521000011568 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAPIVKSSNMSLGI 132 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~il~apN~SiGv 132 (280) T Consensus 77 ~~~~s~~~~~~~~~~G~~VID~Ssa~R~~~~vPlvvPEvN~~~l~---~~~~iIanPnC~tt~ 136 (347) T PRK06728 77 GGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLK---EHKGIIAVPNCSALQ 136 (347) T ss_pred CHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHH---CCCCEEECCCHHHHH T ss_conf 578899999999858969998975656899974588752966762---327837789808889 |
|
| >pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=59.03 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=71.2 Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 7999899-8779999999983899789999964898020455366608754--675455685785213550476310102 Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~--saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 78 (121) T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSR--SAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALPAGV 78 (121) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECC--CCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCCHHH T ss_conf 99998936199999999997188755137885056--5896014416542466664477589778538989998387689 Q ss_pred HHHHHHHHHHCCCEEEEEECCC Q ss_conf 4788876432372157650222 Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 79 s~~~~~~~~~~g~~VIDlS~df 100 (121) T pfam01118 79 SKELAPKLLEAGAVVIDLSSAF 100 (121) T ss_pred HHHHHHHHHHCCCEEEECCHHH T ss_conf 9999999871598998785675 |
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-05 Score=54.76 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=78.8 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC Q ss_conf 73799989987799999999838997--8999996489802045536660875467545568578521355047631010 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280) T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~-----~~g~~~~~~~~~~~~~advv~LavKPq 73 (266) T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAA-----EYGVVTTTDNQEAVEEADVVFLAVKPQ 73 (266) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH--HHHH-----HCCCCCCCCHHHHHHHCCEEEEEECHH T ss_conf 965899846889999999999668998023898379999999--9999-----849855686798874089899984827 Q ss_pred HHHHHHHHHH--HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH Q ss_conf 2478887643--237215765022231358999874035552100-00115 Q gi|254780279|r 83 LTLQSLNISA--QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280) Q Consensus 83 ~~~~~~~~a~--~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280) T Consensus 74 ~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~---~~l~~~~vvR~MPNt~a 121 (266) T COG0345 74 DLEEVLSKLKPLTKDKLVISIAAGVSIETLE---RLLGGLRVVRVMPNTPA 121 (266) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCHHHHH---HHCCCCCEEEECCCHHH T ss_conf 6899999732356888799970799799999---87489966996788588 |
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=56.49 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=73.1 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 3799989987799999999838997-899999648980204553666087546754556857852135504763101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSI-TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~-eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~------~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP~~~ 74 (255) T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQI------AARLAARFAKVRIAKDNQAVVDRSDVVFLAVRPQIA 74 (255) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHH------HHHHHHHCCCEEEECCHHHHHHHCCEEEEEECHHHH T ss_conf 98999864699999999999788992508898989899------999998769559857889998518878886178889 Q ss_pred HHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHH Q ss_conf 78887643-237215765022231358999874035552100-0011568 Q gi|254780279|r 85 LQSLNISA-QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGI 132 (280) Q Consensus 85 ~~~~~~a~-~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv 132 (280) T Consensus 75 ~~vl~~l~~~~~~~vISi~AGi~i~~l~~~--l~~~~~vvR~MPN~~~~~ 122 (255) T PRK06476 75 EEVLRALRFRPGQTVISVIAATTRAALLKW--IGADVKLVRAIPLPFVAE 122 (255) T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHH--HCCCCCEEEECCCCHHHH T ss_conf 988776205789789997378779999976--189986488558708884 |
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-05 Score=54.21 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=73.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCE--EEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 37999899877999999998389978--9999964898020455366608754675455685785213550476310102 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSIT--LHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~e--Lv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 2 ~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~dvIilaVKP~~ 75 (275) T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVITPEEIILYSRSENEHF----KQLY--DKYPTVALASNEELFTKCDHSFICVPPLA 75 (275) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH----HHHH--HHCCCEEECCHHHHHHHCCEEEEEECHHH T ss_conf 88999867899999999999789999636999789938999----9999--87495363777999854998999978587 Q ss_pred HHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHH Q ss_conf 478887643---237215765022231358999874035552100-0011568 Q gi|254780279|r 84 TLQSLNISA---QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGI 132 (280) Q Consensus 84 ~~~~~~~a~---~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv 132 (280) T Consensus 76 ~~~vl~~i~~~~~~~~~iISi~AGi~i~~l~~~---~~-~~vvRvMPNtpa~v 124 (275) T PRK06928 76 VLPLMKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TP-GQVSRLIPSLTSAV 124 (275) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH---CC-CCEEEEECCCCHHH T ss_conf 999999976532799689995699989999975---79-98379713732776 |
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=51.70 Aligned_cols=117 Identities=14% Similarity=0.247 Sum_probs=89.6 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE Q ss_conf 88737999899-8779999999983899789999964898020455366608754675455685785213--55047631 Q gi|254780279|r 3 QSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280) Q Consensus 3 ~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280) T Consensus 6 ~~~trv~vqGiTG~~g~~h~~~m~~y-GT~iVaGVtPgkg---G~--------~~~gvPVf~tV~eAv~~~~~d~svIfV 73 (289) T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKG---GT--------THLGLPVFNTVKEAVEATGATASVIYV 73 (289) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCC---CE--------EEECCCCCCCHHHHHHHCCCCEEEEEE T ss_conf 59983999878883777999999986-8956999779978---51--------765833306599998612888699970 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHCCC-CCEECCCHHHHH Q ss_conf 010247888764323721576502-22313589998740355-521000011568 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSFARNA-PIVKSSNMSLGI 132 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~s~~~-~il~apN~SiGv 132 (280) T Consensus 74 Pp~~a~dAi~EAi~agI~~iV~ITEgiP~~D~~~i~~~a~~~g~riIGPNc-~Gi 127 (289) T PRK05678 74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKRYLKGKKTRLIGPNC-PGI 127 (289) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCC-CEE T ss_conf 789999999999867998899943899788899999987307988988999-701 |
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.2e-05 Score=55.92 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=77.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-HHH----------CCCHHHH------CCCCCCCCCC--CCCH Q ss_conf 7379998998779999999983899789999964898-020----------4553666------0875467545--5685 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-PLI----------GQDVGNF------VGISPMGIKF--SDNL 65 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-~~~----------g~d~~~~------~~~~~~~v~i--~~dl 65 (280) T Consensus 2 tirIgINGFGRIGR~v~R~~~~~~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p 81 (333) T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQNKAI 81 (333) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEECCCCC T ss_conf 67999957887899999998528990899991799998999998601267898998689809969999999877414880 Q ss_pred HHH-HCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHH----H--HHHHCC-CCCEECCCHHHHHHHHHH Q ss_conf 785-21355047631010247888764323721576502223135899----9--874035-552100001156899999 Q gi|254780279|r 66 AMA-IQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEV----I--SSFARN-APIVKSSNMSLGINFLGF 137 (280) Q Consensus 66 ~~~-~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~----l--~~~s~~-~~il~apN~SiGv~ll~~ 137 (280) T Consensus 82 ~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~k~~~~~tiV~GVN~~~~~~~~~~ii--S~aSCTTNclAP 159 (333) T PRK08955 82 ADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLYDPAIHPIV--TAASCTTNCLAP 159 (333) T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHCCCCCCCEE--ECCCHHHHHHHH T ss_conf 127866676899916766888999999875985799657998777404899603221476547578--746414213476 Q ss_pred HHHHHHHHH Q ss_conf 999999861 Q gi|254780279|r 138 LVETAAEYL 146 (280) Q Consensus 138 l~~~~a~~l 146 (280) T Consensus 160 ~~kvl~~~f 168 (333) T PRK08955 160 VVKVIHEKL 168 (333) T ss_pred HHHHHHHHC T ss_conf 999888635 |
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-05 Score=54.77 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=75.1 Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEE Q ss_conf 9988737999899-87799999999838--99789999964898020455366608754675455685785213550476 Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIID 77 (280) Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViID 77 (280) T Consensus 1 M~~-~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~---saGk~i~~~----~~~l~v~~~~~~~~~~vDlvf- 71 (336) T PRK05671 1 MSQ-PLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASME---SAGHSVPFA----GKNLRVREVDSFDFSQVKLAF- 71 (336) T ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC---CCCCEEEEC----CCEEEEEECCCCCCCCCCEEE- T ss_conf 998-88799999864999999999863699802699998765---689875468----967899978824424598899- Q ss_pred EEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHH---------HHHHHHHCCCCCEECCCHHHH Q ss_conf 310-102478887643237215765022231358---------999874035552100001156 Q gi|254780279|r 78 FSS-PALTLQSLNISAQHNIVHIIGTTGFSVKEN---------EVISSFARNAPIVKSSNMSLG 131 (280) Q Consensus 78 FT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~---------~~l~~~s~~~~il~apN~SiG 131 (280) T Consensus 72 fa~~~~vs~~~a~~~~~aG~~VID~Ss~fr~~~vPlvvPEvN~~~l~~~-~~~~iVanPnC~t~ 134 (336) T PRK05671 72 FAAGAAVSRSFAEKALAAGCSVIDLSGALPSAQAPNVVPEANAERLASL-AAPFLVSSPSASAV 134 (336) T ss_pred ECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCHHHHHHC-CCCCEEECCCCHHH T ss_conf 8688166799899999769979956201330379777404299999607-56877867860666 |
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=49.89 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=75.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH----------CCCHHHH--------CCCCCCCCCCCCCHH Q ss_conf 7379998998779999999983899789999964898020----------4553666--------087546754556857 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI----------GQDVGNF--------VGISPMGIKFSDNLA 66 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~----------g~d~~~~--------~~~~~~~v~i~~dl~ 66 (280) T Consensus 2 ~irIgINGFGRIGR~v~R~~~~~~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~dp~ 81 (343) T PRK07729 2 KVRVAINGFGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNNRDPK 81 (343) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCCCCHH T ss_conf 67999978886899999999668998899984899989999975852778988997897199799999750123669967 Q ss_pred HHH---CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-----HHHH-CCCCCEECCCHHHHHHHHHH Q ss_conf 852---13550476310102478887643237215765022231358999-----8740-35552100001156899999 Q gi|254780279|r 67 MAI---QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVI-----SSFA-RNAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 67 ~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l-----~~~s-~~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 82 ~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~k~~d~tiV~GVN~~~~~~~~~~Ii--SnASCTTNclAP 159 (343) T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTVI--SNASCTTNCLAP 159 (343) T ss_pred HCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCEE--ECCCHHHHHHHH T ss_conf 788410388499974755678899998885498679988898999745997235554576548389--738479888999 Q ss_pred HHHHHHHHHC Q ss_conf 9999998611 Q gi|254780279|r 138 LVETAAEYLL 147 (280) Q Consensus 138 l~~~~a~~l~ 147 (280) T Consensus 160 v~kvL~~~fG 169 (343) T PRK07729 160 VVKVLDEQFG 169 (343) T ss_pred HHHHHHHHCC T ss_conf 9999986538 |
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=51.36 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=68.0 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCC-CCHHH-HHCCCCEEEEEE Q ss_conf 737999899-8779999999983899789999964898020455366608754--675455-68578-521355047631 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFS-DNLAM-AIQSVDGIIDFS 79 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~-~dl~~-~~~~~DViIDFT 79 (280) T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~---~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349) T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE---RAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHH---HCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEC T ss_conf 815999778877489999998659973799963166---45870687582423534554335774553015688899906 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 01024788876432372157650222 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadf 104 (349) T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADF 104 (349) T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 86368898999974799499887320 |
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=51.35 Aligned_cols=97 Identities=13% Similarity=0.266 Sum_probs=66.8 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-C-CCCCCCC-CCHHHHHCCCCEEEEEEC Q ss_conf 737999899-87799999999838997899999648980204553666087-5-4675455-685785213550476310 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-S-PMGIKFS-DNLAMAIQSVDGIIDFSS 80 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~-~~~v~i~-~dl~~~~~~~DViIDFT~ 80 (280) T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~---saGk~i~~~~p~l~~~~~~~~~~~~~~~~~~~~Divf-~al 76 (345) T PRK00436 1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRS---SAGKPLSDLHPHLRGLVDLVLEPLDPEEIAAGADVVF-LAL 76 (345) T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC---CCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCCEEE-ECC T ss_conf 919999896618899999999809986799997578---6897377858110377787476499889426999999-889 Q ss_pred CC-HHHHHHHHHHHCCCEEEEEECCC Q ss_conf 10-24788876432372157650222 Q gi|254780279|r 81 PA-LTLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 81 P~-~~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 77 p~~~S~~~~~~~~~~g~~VID~Ssdf 102 (345) T PRK00436 77 PHGVSMELAPQLLEAGVKVIDLSADF 102 (345) T ss_pred CHHHHHHHHHHHHHCCCEEEECCHHH T ss_conf 83899999999986698799897012 |
|
| >pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=53.09 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=64.6 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE-ECCCHH Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763-101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF-SSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF-T~P~~~ 84 (280) T Consensus 2 ~~Ig~IGlG~MG~~ma~~L~~-~g~~v~-v~d~~~~~~~-----~~---~~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v 71 (163) T pfam03446 2 AKIGFIGLGVMGSPMALNLLK-AGYTVT-VYNRTPEKVE-----EL---VAEGAVAAASPAEAAASADVVITMVPAGAAV 71 (163) T ss_pred CEEEEEEEHHHHHHHHHHHHH-CCCEEE-EEECCHHHHH-----HH---HHCCCEECCCHHHHHHCCCEEEEECCCHHHH T ss_conf 889998367989999999997-799699-9979788779-----99---9839955399999986199999925871454 Q ss_pred HHHHHH------HHHCCCEEEEEECCCCHHHHHHHHHHH Q ss_conf 788876------432372157650222313589998740 Q gi|254780279|r 85 LQSLNI------SAQHNIVHIIGTTGFSVKENEVISSFA 117 (280) Q Consensus 85 ~~~~~~------a~~~g~~vViGTTG~~~e~~~~l~~~s 117 (280) T Consensus 72 ~~V~~~~~gl~~~~~~g~iiid~sT~~p-~~~~~~~~~~ 109 (163) T pfam03446 72 DAVIFGEDGLLPGLKPGDIIIDGSTISP-DDTRRLAKEL 109 (163) T ss_pred HEEECCCCCHHHHCCCCCEEEECCCCCH-HHHHHHHHHH T ss_conf 0220263133231358988986798999-9999999987 |
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. |
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=52.05 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=66.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHH---CCCCEEEEEEECCCCHHH----------CCCHHHH------CCCCCCCCCC--CC Q ss_conf 7379998998779999999983---899789999964898020----------4553666------0875467545--56 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHN---NPSITLHSIIVRSGSPLI----------GQDVGNF------VGISPMGIKF--SD 63 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~---~~~~eLv~~i~~~~~~~~----------g~d~~~~------~~~~~~~v~i--~~ 63 (280) T Consensus 1 tikIgINGFGRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~~ 80 (336) T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHER 80 (336) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEECC T ss_conf 96999978888999999999866889986999978899989999986422678889997897089799999899999558 Q ss_pred CHHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCC-EEEEEEC-----------CCCHHHHHHHHHHHCCCCCEECCCH Q ss_conf 857852---135504763101024788876432372-1576502-----------2231358999874035552100001 Q gi|254780279|r 64 NLAMAI---QSVDGIIDFSSPALTLQSLNISAQHNI-VHIIGTT-----------GFSVKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 64 dl~~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~-~vViGTT-----------G~~~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 81 dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~~~~d~tiV~GVN~~~~~------~~~~Ii--SnA 152 (336) T PRK13535 81 DLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLR------AEHRIV--SNA 152 (336) T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHCC------CCCEEE--ECC T ss_conf 943398311587599970431167899999987598568982588766686389615756748------665389--757 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 156899999999999861 Q gi|254780279|r 129 SLGINFLGFLVETAAEYL 146 (280) Q Consensus 129 SiGv~ll~~l~~~~a~~l 146 (280) T Consensus 153 SCTTNclAPv~kvl~~~f 170 (336) T PRK13535 153 SCTTNCIIPVIKLLDDAF 170 (336) T ss_pred CCCCCEEEEHHHHHHHCC T ss_conf 533241401255366336 |
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=51.77 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=72.5 Q ss_pred CEEEEEECCCHHHHHHHHHHH--HCCCCEEEEEEECCCCHHH----------CCCHHH--------HCCCCCCCCCCCCC Q ss_conf 737999899877999999998--3899789999964898020----------455366--------60875467545568 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIH--NNPSITLHSIIVRSGSPLI----------GQDVGN--------FVGISPMGIKFSDN 64 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~--~~~~~eLv~~i~~~~~~~~----------g~d~~~--------~~~~~~~~v~i~~d 64 (280) T Consensus 1 MikIgINGFGRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~~ 80 (337) T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECCC T ss_conf 90999968887899999999856699869999847998899999867147899989858971998999998878880599 Q ss_pred HHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHH------HHHHH-CCCCCEECCCHHHHHH Q ss_conf 57852---135504763101024788876432372157650-2223135899------98740-3555210000115689 Q gi|254780279|r 65 LAMAI---QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGT-TGFSVKENEV------ISSFA-RNAPIVKSSNMSLGIN 133 (280) Q Consensus 65 l~~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~------l~~~s-~~~~il~apN~SiGv~ 133 (280) T Consensus 81 p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~k~~d-~~tiV~GVN~~~~~~~~h~II--S~aSCTTN 157 (337) T PRK07403 81 PLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEG-IGTYVVGVNHHEYDHEDYNII--SNASCTTN 157 (337) T ss_pred HHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCC-CCEEEEECCHHHCCCCCCEEE--ECCCHHHH T ss_conf 666980130998999898654877889998756986799806998887-666998426355375444189--73625876 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999861 Q gi|254780279|r 134 FLGFLVETAAEYL 146 (280) Q Consensus 134 ll~~l~~~~a~~l 146 (280) T Consensus 158 clAPv~kvL~~~f 170 (337) T PRK07403 158 CLAPIAKVIHDNF 170 (337) T ss_pred HHHHHHHHHHHHC T ss_conf 6888999887515 |
|
| >PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00042 Score=48.25 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=84.3 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCC--------CCEEEEEEECCCCHH--HCCCHHHHCC-CCCCCCCCCCCHHHHHC- Q ss_conf 88737999899877999999998389--------978999996489802--0455366608-75467545568578521- Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNP--------SITLHSIIVRSGSPL--IGQDVGNFVG-ISPMGIKFSDNLAMAIQ- 70 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~--------~~eLv~~i~~~~~~~--~g~d~~~~~~-~~~~~v~i~~dl~~~~~- 70 (280) T Consensus 463 ~~~i~i~l~G~G~vG~~ll~qi~~q~~~l~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~--~~~~~~~~~~ 540 (817) T PRK09436 463 DQVIDVFVIGVGGVGGALLEQIKRQQQWLKKKHIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGE--PFDLDRLIRL 540 (817) T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCC--CCCHHHHHHH T ss_conf 65477999844728799999999999988526944999999757605766899898999999985678--7779999999 Q ss_pred --C----CCEEEEEECCCHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHH Q ss_conf --3----5504763101024788876432372157650----22231358999874035--5521000011568999999 Q gi|254780279|r 71 --S----VDGIIDFSSPALTLQSLNISAQHNIVHIIGT----TGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFL 138 (280) Q Consensus 71 --~----~DViIDFT~P~~~~~~~~~a~~~g~~vViGT----TG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l 138 (280) T Consensus 541 ~~~~~~~n~v~vD~Tas~~~~~~Y~~~l~~g~~vvt~NK~a~s~-~~~~y~~l~~~~~~~~~~~lyEatVgaGlPii~tl 619 (817) T PRK09436 541 VKEYHLLNPVIVDCTSSAAVADQYADFLAAGFHVVTPNKKANTS-SMAYYHQLREAARKSRRKFLYETNVGAGLPVIENL 619 (817) T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH T ss_conf 99638988489988887688999999998599699268646777-89999999999986498587504204686479999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780279|r 139 VETA 142 (280) Q Consensus 139 ~~~~ 142 (280) T Consensus 620 ~~l~ 623 (817) T PRK09436 620 QNLL 623 (817) T ss_pred HHHH T ss_conf 9998 |
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=44.88 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=81.2 Q ss_pred CEEEEEECC-CHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH--HHHHCCCCEEEEEEC Q ss_conf 737999899-8779999999983-899789999964898020455366608754675455685--785213550476310 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHN-NPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL--AMAIQSVDGIIDFSS 80 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~-~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl--~~~~~~~DViIDFT~ 80 (280) T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rS--aG~~~~~f~~~~---~~v~~~~~~~~~~~~~Divf-~~a 74 (334) T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARS--AGKKYIEFGGKS---IGVPEDAADEFVFSDVDIVF-FAA 74 (334) T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCC--CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEE-EEC T ss_conf 918999942355899999998753998405788852311--577160106750---35762113410012499999-917 Q ss_pred C-CHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCC-CEECCCHHHHH Q ss_conf 1-0247888764323721576502223135----------899987403555-21000011568 Q gi|254780279|r 81 P-ALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAP-IVKSSNMSLGI 132 (280) Q Consensus 81 P-~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~-il~apN~SiGv 132 (280) T Consensus 75 g~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst~~ 137 (334) T COG0136 75 GGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCSTIQ 137 (334) T ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHH-CCCEEECCCHHHHH T ss_conf 6687899999999769889968731115899877658869899974541-79789889718999 |
|
| >pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=48.51 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=57.5 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCC-CCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 79998998779999999983899789999964898020455366608754675-45568578521355047631010247 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI-KFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v-~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 1 KIg~IG~G~mg~ai~~~l~~~-g~~~~~~~~r~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~DvIilavkp~~~~ 72 (93) T pfam03807 1 KIGIIGAGNMGEALARGLAAA-GHEVIIANSRNPEKAA--ALA-----EELGVGATAVSNEEAAEEADVVILAVKPEDAP 72 (93) T ss_pred CEEEECCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHH--HHH-----HHHCCCCCCCCHHHHHHCCCEEEEEECHHHHH T ss_conf 989997009999999999977-9961278648789999--999-----98199764589999974499899997999999 Q ss_pred HHHHHHHH--CCCEEEEEECC Q ss_conf 88876432--37215765022 Q gi|254780279|r 86 QSLNISAQ--HNIVHIIGTTG 104 (280) Q Consensus 86 ~~~~~a~~--~g~~vViGTTG 104 (280) T Consensus 73 ~vl~~i~~~~~~k~vISv~aG 93 (93) T pfam03807 73 EVLAELADLLKGKLVISITNG 93 (93) T ss_pred HHHHHHHHHCCCCEEEEECCC T ss_conf 999987625089999980999 |
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=44.39 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=85.6 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCHH--HCCCHHHHCCCCCCCCCCCCCHHHHHC- Q ss_conf 8873799989987799999999838---------9978999996489802--045536660875467545568578521- Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSPL--IGQDVGNFVGISPMGIKFSDNLAMAIQ- 70 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~~--~g~d~~~~~~~~~~~v~i~~dl~~~~~- 70 (280) T Consensus 456 ~~~i~v~l~G~G~VG~~ll~qi~~q~~~l~~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~-~~~~~~~~~~~~~~ 534 (810) T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGIDASRALAFFD-DEAVEQDEESLFLW 534 (810) T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHH-HCCCCCCHHHHHHH T ss_conf 65577999825728899999999999998875097379999974750575688989899999876-52676769999999 Q ss_pred ------CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHH Q ss_conf ------35504763101024788876432372157650----22231358999874035--5521000011568999999 Q gi|254780279|r 71 ------SVDGIIDFSSPALTLQSLNISAQHNIVHIIGT----TGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFL 138 (280) Q Consensus 71 ------~~DViIDFT~P~~~~~~~~~a~~~g~~vViGT----TG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l 138 (280) T Consensus 535 ~~~~~~~~~v~vD~t~s~~~~~~y~~~l~~g~~vvt~Nk~a~s~-~~~~y~~l~~~~~~~~~~~~yEttVgaGlPii~tl 613 (810) T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSS-PSPFYRQIKDAFAKTGRHWLYNATVGAGLPINHTV 613 (810) T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCCCC-CHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH T ss_conf 98538888779975747889999999998198798256304687-79999999999997097588604324685369999 Q ss_pred H Q ss_conf 9 Q gi|254780279|r 139 V 139 (280) Q Consensus 139 ~ 139 (280) T Consensus 614 ~ 614 (810) T PRK09466 614 R 614 (810) T ss_pred H T ss_conf 9 |
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0004 Score=48.40 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=77.0 Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEE Q ss_conf 9988737999899-87799999999838--99789999964898020455366608754675455685785213550476 Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIID 77 (280) Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViID 77 (280) T Consensus 1 M~~-~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~l-aS~~S--aGk~i~----~~~~~~~v~~~~~~~~~~~di~f- 71 (337) T PRK08040 1 MSE-GWNIALLGATGAVGEALLETLAERQFPVGEIYAL-AREES--AGETLR----FGGKSITVQDAAEFDWTQAQLAF- 71 (337) T ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE-ECCCC--CCCEEE----ECCCEEEEEECCCCCCCCCCEEE- T ss_conf 999-9879998885088999999997179981359999-88888--997777----89918899977703324698899- Q ss_pred EE-CCCHHHHHHHHHHHCCCEEEEEECCCCHH-H---------HHHHHHHHCCCCCEECCCHHHHH Q ss_conf 31-01024788876432372157650222313-5---------89998740355521000011568 Q gi|254780279|r 78 FS-SPALTLQSLNISAQHNIVHIIGTTGFSVK-E---------NEVISSFARNAPIVKSSNMSLGI 132 (280) Q Consensus 78 FT-~P~~~~~~~~~a~~~g~~vViGTTG~~~e-~---------~~~l~~~s~~~~il~apN~SiGv 132 (280) T Consensus 72 f~a~~~~s~~~~~~a~~aG~~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~-~~~~IianPNCsT~~ 136 (337) T PRK08040 72 FVAGKEASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY-RNRNVIAVADSLTSQ 136 (337) T ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCHHHHHHH-CCCCEEECCCHHHHH T ss_conf 91771788888999984895999796131058887421674087888743-249825457708888 |
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00059 Score=47.24 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=87.2 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEEC Q ss_conf 8737999899-8779999999983899789999964898020455366608754675455685785213--550476310 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSS 80 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~ 80 (280) T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgk-----------gG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp 74 (293) T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGK-----------GGQTILGLPVFNTVEEAVKETGANASVIFVP 74 (293) T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-CCCEEECCCCCC-----------CCEEECCCCHHHHHHHHHHHHCCCEEEEECC T ss_conf 8974898336542003889999972-985664236897-----------7438837547899999987028977999648 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHCCCC-CEECCC Q ss_conf 10247888764323721576502-223135899987403555-210000 Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSFARNAP-IVKSSN 127 (280) Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~s~~~~-il~apN 127 (280) T Consensus 75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPn 123 (293) T COG0074 75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPN 123 (293) T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCC T ss_conf 1778999999985799579999599988899999999986697998799 |
|
| >pfam00899 ThiF ThiF family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00046 Score=47.97 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=61.1 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--HHH-------CCCHH----HH-----CCCC-C-----CCCCC- Q ss_conf 79998998779999999983899789999964898--020-------45536----66-----0875-4-----67545- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--PLI-------GQDVG----NF-----VGIS-P-----MGIKF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--~~~-------g~d~~----~~-----~~~~-~-----~~v~i- 61 (280) T Consensus 3 kVlivG~GglG~~~~~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~ 81 (134) T pfam00899 3 RVLVVGAGGLGSPAAEYLARA-GVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLT 81 (134) T ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 899989888999999999993-8974999989567632227224233646688107999999997789958999925679 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC Q ss_conf 568578521355047631-010247888764323721576502-223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280) T Consensus 82 ~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~ip~i~~~~~g~~ 128 (134) T pfam00899 82 PENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAGALGFD 128 (134) T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCE T ss_conf 77876426448899999899999999999999859989995546788 |
This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00081 Score=46.28 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=59.3 Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 7999899-877999999998389978999996489802045536660875-46754556857852135504763101024 Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~--~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s 78 (122) T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR--SAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHH T ss_conf 98998945199999999998589974577774046--5897578859664577350565331100179999993882788 Q ss_pred HHHHHH---HHHCCCEEEEEECCC Q ss_conf 788876---432372157650222 Q gi|254780279|r 85 LQSLNI---SAQHNIVHIIGTTGF 105 (280) Q Consensus 85 ~~~~~~---a~~~g~~vViGTTG~ 105 (280) T Consensus 79 ~~~~~~~~~~~~~g~~VIDlSadf 102 (122) T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAF 102 (122) T ss_pred HHHHHHHHHHHHCCCEEEECCHHH T ss_conf 999998898875698798684775 |
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00084 Score=46.17 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=62.6 Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC--C--------CCCCCCCCCCHHH Q ss_conf 73-799989987799999999838997899999648980204------55366608--7--------5467545568578 Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG--I--------SPMGIKFSDNLAM 67 (280) Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~--~--------~~~~v~i~~dl~~ 67 (280) T Consensus 1 Pi~~VaViGaG~mG~giA~~~a-~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~ 78 (308) T PRK06129 1 PMGSIAIVGAGLIGRAWAIVFA-RAGHRVR-LWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLAD 78 (308) T ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHH T ss_conf 9987999777899999999998-5899389-9989889999999999999999997699987659999835072288899 Q ss_pred HHCCCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 521355047631010-----24788876432372157650222313589 Q gi|254780279|r 68 AIQSVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 68 ~~~~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 79 al~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~is~la 127 (308) T PRK06129 79 AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFT 127 (308) T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 8474999999980779999999999996569855898455538899999 |
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=45.59 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=73.4 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC Q ss_conf 737999899-87799999999838--997899999648980204553666087546754556857852135504763101 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280) T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s---~G~~~~-~~~---~~~~~~~~~~~~~~~~Di~f-~a~~ 73 (348) T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRS---GGKAPS-FGG---KTLLVDALDIEDLKGLDIAL-FSAG 73 (348) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC---CCCCCE-ECC---CEEEEEECCHHHHHCCCEEE-ECCC T ss_conf 847999898459999999999867999624999987566---898750-689---55478627855760799999-8688 Q ss_pred -CHHHHHHHHHHHCCCEEEEEECCCC----------HHHHHHHHHHHCCCCCEECCCHHHHH Q ss_conf -0247888764323721576502223----------13589998740355521000011568 Q gi|254780279|r 82 -ALTLQSLNISAQHNIVHIIGTTGFS----------VKENEVISSFARNAPIVKSSNMSLGI 132 (280) Q Consensus 82 -~~~~~~~~~a~~~g~~vViGTTG~~----------~e~~~~l~~~s~~~~il~apN~SiGv 132 (280) T Consensus 74 ~~~s~~~~~~~~~~g~~VIDlSs~fR~~~~vplvvPEiN~~~i~~~~-~~~iIAnPgC~~t~ 134 (348) T PRK06598 74 GDYSKEVAPKLRAAGGVVIDNASALRMDPDVPLVVPEVNPDAIKDAL-KKGIIANPNCTTSL 134 (348) T ss_pred CHHHHHHHHHHHHCCCEEEECCHHHCCCCCCEEECCCCCHHHHHHCC-CCCCEECCCCHHHH T ss_conf 23568888999758989998864310368843764620789997341-36822388819999 |
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00095 Score=45.82 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=57.3 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 737999899-8779999999983899789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~i~~~~~-----k~~~--------------~~~~~~~~~DvvFlalPh~~ 62 (314) T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR-----KDPA--------------ARRELLNAADIAILCLPDDA 62 (314) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCC-----CCHH--------------HHHHHHHCCCEEEECCCCHH T ss_conf 8269998998856999999997599829999671125-----5755--------------67877506999999999778 Q ss_pred HHHHHHHHHHCCCEEEEEEC Q ss_conf 47888764323721576502 Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTT 103 (280) Q Consensus 84 ~~~~~~~a~~~g~~vViGTT 103 (280) T Consensus 63 s~~~v~~~~~~g~kVIDLSa 82 (314) T PRK11863 63 AREAVALIDNPATRVIDAST 82 (314) T ss_pred HHHHHHHHHHCCCEEEECCC T ss_conf 99999988627988998985 |
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=45.35 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=75.4 Q ss_pred CCCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCC--CCEEEE Q ss_conf 8873799989987799999999-8389978999996489802045536660875467545--5685785213--550476 Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQS--VDGIID 77 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~--~DViID 77 (280) T Consensus 82 ~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~-kiG~~i--------~gi~V~~i~~L~~~i~~~~i~iaIi 152 (211) T PRK05472 82 DKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPE-KVGTKI--------GGIPVYHIDELEEVIKENDIEIAIL 152 (211) T ss_pred CCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHH-HCCCEE--------CCEEEECHHHHHHHHHHHCCCEEEE T ss_conf 9975089988877999998487623189789999748978-859883--------8838734999999999819938999 Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHH Q ss_conf 3101024788876432372157650222313589998740355521000011568999 Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135 (280) Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll 135 (280) T Consensus 153 aVP~~~AQ~vad~Lv~aGIk~Il---NFap~~L~vP----~~-V~V~nvDl~~~L~~L 202 (211) T PRK05472 153 TVPAEAAQEVADRLVEAGIKGIL---NFAPVRLNVP----ED-VIVQNVDLTVELQTL 202 (211) T ss_pred ECCHHHHHHHHHHHHHHCCEEEE---ECCCCCCCCC----CC-CEEEECCHHHHHHHH T ss_conf 55768899999999981983999---7687244799----99-789973709899999 |
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=45.26 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=59.9 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 1 M~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~---~~A~~~g~id----~~~~~~-~i~~aDlVila~Pv~~~~ 72 (275) T PRK08507 1 MKIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHE---KDALDLGLVD----EIVEFE-EIKECDVIFLAIPVDAII 72 (275) T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHCCCCC----CCCCHH-HCCCCCEEEEECCHHHHH T ss_conf 98999900878999999999509986799995999999---9999869986----106731-236579899917699999 Q ss_pred HHHHHHHHCCCEEEEEECCCCHHH Q ss_conf 888764323721576502223135 Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGFSVKE 109 (280) Q Consensus 86 ~~~~~a~~~g~~vViGTTG~~~e~ 109 (280) T Consensus 73 ~~l~~l~~l~~~~iitDv~SvK~~ 96 (275) T PRK08507 73 EILQKLLDIKENTTIIDLGSTKAK 96 (275) T ss_pred HHHHHHHHCCCCCEEEECCCHHHH T ss_conf 999998604678889834312899 |
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00062 Score=47.07 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=67.2 Q ss_pred CCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEEC Q ss_conf 873799989987799999999-83899789999964898020455366608754675455685785213--550476310 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSS 80 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~ 80 (280) T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~-~VG~~~~~------v~V~~~d~le~~v~~~dv~iaiL-tV 154 (211) T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPD-KVGTKIGD------VPVYDLDDLEKFVKKNDVEIAIL-TV 154 (211) T ss_pred CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHH-HHCCCCCC------EEEECHHHHHHHHHHCCCCEEEE-EC T ss_conf 403489990570888986074233269359999617878-83752488------14552688888988617618999-73 Q ss_pred CC-HHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 10-2478887643237215765022231358 Q gi|254780279|r 81 PA-LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280) Q Consensus 81 P~-~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280) T Consensus 155 Pa~~AQ~vad~Lv~aGVkGIlN---FtPv~l 182 (211) T COG2344 155 PAEHAQEVADRLVKAGVKGILN---FTPVRL 182 (211) T ss_pred CHHHHHHHHHHHHHCCCCEEEE---CCCEEE T ss_conf 4898999999999838735884---263575 |
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0041 Score=41.46 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=83.5 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEEC Q ss_conf 8737999899-877999999998389978999996489802045536660875467545568578521--3550476310 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSS 80 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~ 80 (280) T Consensus 22 ~~TkViVQGiTG~~g~~h~~~m~~-yGT~iVaGVtPgkg---G--------~~~~gvPVf~tV~eAv~~~~~d~SvIfVP 89 (309) T PTZ00187 22 KDTKVICQGITGKQGTFHTEQALA-YGTKMVGGVSPKKA---G--------TTHLGLPVFGTVAEAKKATGADASVIYVP 89 (309) T ss_pred CCCEEEEECCCCCHHHHHHHHHHH-HCCCEEEEECCCCC---C--------EECCCCCCCCCHHHHHHHHCCCEEEEECC T ss_conf 998199976888288899999998-68977987478868---7--------24379887665999998568987999626 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHH-HCC-CCCEECCCH Q ss_conf 10247888764323721576502-2231358999874-035-552100001 Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSF-ARN-APIVKSSNM 128 (280) Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~-s~~-~~il~apN~ 128 (280) T Consensus 90 p~~a~dAilEAi~agI~liV~ITEgIP~~Dm~~v~~~~~~~~~t~liGPNc 140 (309) T PTZ00187 90 PPHAAAAIIEAIEAEIPLVVVITEGIPQHDMLKVKSMLLSQNKTRLIGPNC 140 (309) T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 411188999999779987999338988888999999998669959989999 |
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=45.52 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=66.2 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------------CCCHHHHCCCCCC-------- Q ss_conf 99887379998998779999999983899789999964898020---------------4553666087546-------- Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------------GQDVGNFVGISPM-------- 57 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------------g~d~~~~~~~~~~-------- 57 (280) T Consensus 1 m~~~~~~IGiIGLGvMG~nmA~Nl~~-~G~~V~-vynrt~~k~~~~~~~~~~~~~~i~~~~sl~e~v~sl~~pr~Iilmv 78 (474) T PTZ00142 1 MDEGESDIGLIGLAVMGQNLSLNMYS-RGFKVS-VYNRTTEKVEEFMKKAKEGNKFVKGYHSLEELVNSLKRPRRVMLLI 78 (474) T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEE T ss_conf 99776746687363867999999997-898799-9779879999999853224677646678999997379999899982 Q ss_pred --CCCCC---CCHHHHHCCCCEEEEEE--CCCHHHHHHHHHHHCCCEEEE-EECC Q ss_conf --75455---68578521355047631--010247888764323721576-5022 Q gi|254780279|r 58 --GIKFS---DNLAMAIQSVDGIIDFS--SPALTLQSLNISAQHNIVHII-GTTG 104 (280) Q Consensus 58 --~v~i~---~dl~~~~~~~DViIDFT--~P~~~~~~~~~a~~~g~~vVi-GTTG 104 (280) T Consensus 79 ~aG~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~rr~~~l~~kgI~fld~GVSG 133 (474) T PTZ00142 79 KAGEAVDEFIDNILPHLEKGDIIIDGGNEWYNNSERRIKLCKEKGILYIGMGVSG 133 (474) T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCC T ss_conf 6982599999999850889998987998886579999999985799186478884 |
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=43.38 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=53.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-C-----CCHHHHC---CCC--------CCCCCCCCCHHHHH Q ss_conf 79998998779999999983899789999964898020-4-----5536660---875--------46754556857852 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI-G-----QDVGNFV---GIS--------PMGIKFSDNLAMAI 69 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~-g-----~d~~~~~---~~~--------~~~v~i~~dl~~~~ 69 (280) T Consensus 5 ~VaViGaG~MG~gIA~~~a~-~G~~V~-l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~ 82 (288) T PRK08293 5 KVTVAGAGVLGSQIAFQTAF-KGFDVT-IYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQAV 82 (288) T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH T ss_conf 89998978899999999995-799289-9989889999999999999999997059991789999980773058989984 Q ss_pred CCCCEEEEEECCCH-----HHHHHHHHHHCCCEEEEEECCCCHHH Q ss_conf 13550476310102-----47888764323721576502223135 Q gi|254780279|r 70 QSVDGIIDFSSPAL-----TLQSLNISAQHNIVHIIGTTGFSVKE 109 (280) Q Consensus 70 ~~~DViIDFT~P~~-----~~~~~~~a~~~g~~vViGTTG~~~e~ 109 (280) T Consensus 83 ~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~it~ 127 (288) T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLPSQ 127 (288) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH T ss_conf 669999997808799999999999974677669986687676579 |
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.002 Score=43.63 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=61.5 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEECC- Q ss_conf 37999899-8779999999983899789999964898020455366608754--6754556857852135504763101- Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFSSP- 81 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT~P- 81 (280) T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~-~G~~Vr~l-vRnp~ka--~~l~~-~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~ 75 (319) T CHL00194 1 MSLLVIGATGTLGRQIVRRALD-EGYQVKCL-VRNLRKA--AFLKE-WGAELVYGDLSLPETIPPALEGITAIIDASTSR 75 (319) T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCCEEEE-ECCHHHH--HHHHH-CCCEEEEECCCCHHHHHHHHCCCCEEEEECCCC T ss_conf 9799989985899999999996-88908999-5786763--23421-596799942788778999965996799945667 Q ss_pred -CH-----------HHHHHHHHHHCCCEEEEEECCCCHH Q ss_conf -02-----------4788876432372157650222313 Q gi|254780279|r 82 -AL-----------TLQSLNISAQHNIVHIIGTTGFSVK 108 (280) Q Consensus 82 -~~-----------~~~~~~~a~~~g~~vViGTTG~~~e 108 (280) T Consensus 76 ~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~ 114 (319) T CHL00194 76 PSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE 114 (319) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 788620889889889999999998499889996135666 |
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=44.46 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=90.1 Q ss_pred CCEEEEEECC----CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCC-CCCCCCHHHH-HCCCCEEEE Q ss_conf 8737999899----877999999998389978999996489802045536660875467-5455685785-213550476 Q gi|254780279|r 4 SPMRISVLGG----GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG-IKFSDNLAMA-IQSVDGIID 77 (280) Q Consensus 4 ~~IkV~I~Ga----GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~-v~i~~dl~~~-~~~~DViID 77 (280) T Consensus 6 ~P~SvAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~~------------i~i~Gr~k~Y~~~~~~dP~~VDLAVi 73 (457) T TIGR02717 6 NPKSVAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKAG------------IEILGRVKAYPSVLEIDPDEVDLAVI 73 (457) T ss_pred CCCCEEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCCC------------EEEEECCCCCCCHHHCCCCCCCEEEE T ss_conf 887158971248898510022000003783036876227887------------14630114578711148997347999 Q ss_pred EECCCHHHHHHHHHHHCCCE-EEEEECCCCH------HHHHHHHHHHCCCCC-EECCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 31010247888764323721-5765022231------358999874035552-1000011568999999999998611 Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIV-HIIGTTGFSV------KENEVISSFARNAPI-VKSSNMSLGINFLGFLVETAAEYLL 147 (280) Q Consensus 78 FT~P~~~~~~~~~a~~~g~~-vViGTTG~~~------e~~~~l~~~s~~~~i-l~apN~SiGv~ll~~l~~~~a~~l~ 147 (280) T Consensus 74 vvPa~~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~lNAtFA~~~p 151 (457) T TIGR02717 74 VVPAKLVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKLNATFAPTMP 151 (457) T ss_pred ECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHCCCCCCC T ss_conf 728567999999986179518999714864531678999999999997678817767362258144021100135788 |
In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. . |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=43.48 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=61.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----------CCCCCCCCCC Q ss_conf 379998998779999999983899789999964898-------------0204553666-----------0875467545 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----------VGISPMGIKF 61 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----------~~~~~~~v~i 61 (280) T Consensus 22 s~VlivG~GGlGs~~~~~La~~-Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i 100 (228) T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228) T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC T ss_conf 9789988778899999999983-997589997874556764221023786687895999999998548875303132100 Q ss_pred -CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf -568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 -SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 -~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 101 ~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~iP~i~g~~~g~~ 148 (228) T cd00757 101 DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFE 148 (228) T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCE T ss_conf 575699887379899987799889999999999839988999740028 |
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=44.12 Aligned_cols=100 Identities=22% Similarity=0.246 Sum_probs=63.4 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC---------CHHHCCCHHH----------HCCCCCCCCCC----- Q ss_conf 37999899877999999998389978999996489---------8020455366----------60875467545----- Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG---------SPLIGQDVGN----------FVGISPMGIKF----- 61 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~---------~~~~g~d~~~----------~~~~~~~~v~i----- 61 (280) T Consensus 25 s~VlIVGaGGLGs~~a~~La~-aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337) T PRK12475 25 KHVLIIGAGALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337) T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH T ss_conf 969999777778999999998-2898699984998314467453002221215574889999999984499974475131 Q ss_pred ---CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf ---568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 ---SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ---~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~ 153 (337) T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYNIPWIYGGCVGSY 153 (337) T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE T ss_conf 19979999998618899988889999999999999969998998870568 |
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=43.10 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=53.9 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCC---C-------CCCCCCCCCCHHHHHC Q ss_conf 79998998779999999983899789999964898020------455366608---7-------5467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280) T Consensus 4 kV~ViGaG~MG~~IA~~~a~-~G~~V~-l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~ 81 (289) T PRK09260 4 KIVVVGAGVMGRGIAYVFAS-SGFQTT-LVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAVA 81 (289) T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHC T ss_conf 69997968878999999996-899889-9979989999999999999999987179998999999955876688899847 Q ss_pred CCCEEEEEEC-----CCHHHHHHHHHHHCCCEEEEEECCCCH Q ss_conf 3550476310-----102478887643237215765022231 Q gi|254780279|r 71 SVDGIIDFSS-----PALTLQSLNISAQHNIVHIIGTTGFSV 107 (280) Q Consensus 71 ~~DViIDFT~-----P~~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280) T Consensus 82 ~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~i 123 (289) T PRK09260 82 GADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLSP 123 (289) T ss_pred CCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCC T ss_conf 699999888686323689999986068998089855888771 |
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0046 Score=41.10 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=62.7 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCC-------CHHHHCC--C-CCCCCCCCCCHHHHHCCCC Q ss_conf 37999899877999999998389978999996489802--045-------5366608--7-5467545568578521355 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQ-------DVGNFVG--I-SPMGIKFSDNLAMAIQSVD 73 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~-------d~~~~~~--~-~~~~v~i~~dl~~~~~~~D 73 (280) T Consensus 3 kkVAVIGAGvMGsGwAa~FA-~aG~~V~-L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dAD 80 (489) T PRK07531 3 MKAACIGGGVIGGGWAARFL-LNGWDVA-VFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGAD 80 (489) T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCC T ss_conf 67999871886899999999-5799699-994887899999999999999877532035564677686388999974799 Q ss_pred EEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 047631010-----24788876432372157650222313589 Q gi|254780279|r 74 GIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 74 ViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 81 lVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~S~l~ 123 (489) T PRK07531 81 WIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKPSELQ 123 (489) T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH T ss_conf 9998785669999999999997679983898536658899998 |
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=43.19 Aligned_cols=126 Identities=13% Similarity=0.198 Sum_probs=69.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE-ECCCH Q ss_conf 799989987799999999838997899999648980204--553666087546754556857852135504763-10102 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF-SSPAL 83 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF-T~P~~ 83 (280) T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG~~rk 81 (306) T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQK 81 (306) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCCCCCC T ss_conf 59999969889999999985799877999818987017699988701330599739960887884789999990676679 Q ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf -478887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 84 -TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 84 -~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 82 ~g~~R~dL-l~~N~~I~-------k~i~~~i~~~~p~aivivvtNP---vDvmt~~~~k~s 131 (306) T cd05291 82 PGETRLDL-LEKNAKIM-------KSIVPKIKASGFDGIFLVASNP---VDVITYVVQKLS 131 (306) T ss_pred CCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEEECCC---HHHHHHHHHHHC T ss_conf 99987899-99789999-------9999998722997189993581---678999999850 |
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=43.33 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=63.2 Q ss_pred CCCCCE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE Q ss_conf 998873-7999899877999999998389978999996489802045536660875467545568578521355047631 Q gi|254780279|r 1 MHQSPM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280) Q Consensus 1 M~~~~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280) T Consensus 1 ~~~~~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l---~~A~~~g~i---d~~~~~~~e~~~~~DlIilat 74 (307) T PRK07502 1 MSAPLFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETR---ARARELGLG---DRVTTSAAEAVKGADLVILCV 74 (307) T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHCCCC---CHHCCCHHHHHCCCCEEEEEC T ss_conf 98564566899927879999999998549985799984999999---999986997---511277766404589799917 Q ss_pred CCCHHHHHHHHHHHC-CCEEEEEECCCCHHH Q ss_conf 010247888764323-721576502223135 Q gi|254780279|r 80 SPALTLQSLNISAQH-NIVHIIGTTGFSVKE 109 (280) Q Consensus 80 ~P~~~~~~~~~a~~~-g~~vViGTTG~~~e~ 109 (280) T Consensus 75 Pv~~~~~vl~~l~~~l~~~~ivTDvgSvK~~ 105 (307) T PRK07502 75 PVGASGAVAAEIAPHLKPGAIVTDVGSVKAS 105 (307) T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCHHH T ss_conf 8999999999998555899689966321189 |
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0023 Score=43.24 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=63.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC---------CHHHCCCHHHH----------CCCCCCCCCC----- Q ss_conf 37999899877999999998389978999996489---------80204553666----------0875467545----- Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG---------SPLIGQDVGNF----------VGISPMGIKF----- 61 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~---------~~~~g~d~~~~----------~~~~~~~v~i----- 61 (280) T Consensus 25 a~VlVvGaGGLGs~~a~~La~a-GVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~ 103 (339) T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ 103 (339) T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 9789987777779999999984-898299980999246678865065621332263779999999983499860587600 Q ss_pred ---CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf ---568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 ---SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ---~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~ 153 (339) T PRK07688 104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYSIPWIYGACVGSY 153 (339) T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE T ss_conf 39989999998518899987889999999999999959998999884468 |
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=42.55 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=59.5 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----C-CC------CCCCCCCC Q ss_conf 79998998779999999983899789999964898-------------0204553666----0-87------54675455 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----V-GI------SPMGIKFS 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~-~~------~~~~v~i~ 62 (280) T Consensus 1 kVlivG~GglG~~va~~L~~~Gv-~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~ 79 (143) T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143) T ss_pred CEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 99999979899999999999379-71999978987500146422589889492248999999985689838999945689 Q ss_pred -CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC Q ss_conf -68578521355047631-010247888764323721576502-223 Q gi|254780279|r 63 -DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280) Q Consensus 63 -~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280) T Consensus 80 ~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~~~g~~ 126 (143) T cd01483 80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLG 126 (143) T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCE T ss_conf 64699997599999987799999999999999869988996366768 |
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=42.49 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=62.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----------CCCCCCCCCC- Q ss_conf 79998998779999999983899789999964898-------------0204553666-----------0875467545- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----------VGISPMGIKF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----------~~~~~~~v~i- 61 (280) T Consensus 40 ~VlvvG~GGLG~p~~~yLaa-aGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l~ 118 (390) T PRK07411 40 SVLCIGTGGLGSPLLLYLAA-AGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLS 118 (390) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHCC T ss_conf 78998887237999999998-38975999748994623478543666200797189999999998689864210343255 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf 568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 119 ~~na~~li~~~DvvvD~tDNf~tRylindac~~~~~PlV~ga~~~~~ 165 (390) T PRK07411 119 SENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFE 165 (390) T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE T ss_conf 52488742288689967888899999899999969987997647778 |
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0031 Score=42.33 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=61.9 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----CCCCCCCC-------CC- Q ss_conf 79998998779999999983899789999964898-------------0204553666----08754675-------45- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----VGISPMGI-------KF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~~~~~~~v-------~i- 61 (280) T Consensus 44 ~VlvvG~GGLG~~~~~yLaa-aGvG~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v~~~~~~l~ 122 (392) T PRK07878 44 RVLVIGAGGLGSPTLLYLAA-AGVGTIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLE 122 (392) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCCC T ss_conf 78998787578999999998-28975999878996745577200568433587079999999998789853121131378 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC Q ss_conf 568578521355047631-010247888764323721576502-223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280) T Consensus 123 ~~n~~~li~~~DvViD~tDN~~tR~lindac~~~~~PlV~ga~~~~~ 169 (392) T PRK07878 123 PSNAVDLFAQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFE 169 (392) T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCE T ss_conf 88987643177689866899899999999999969987997605758 |
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0031 Score=42.31 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=60.3 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----------CCCCCCCCCCC Q ss_conf 799989987799999999838997899999648980-------------204553666-----------08754675455 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----------VGISPMGIKFS 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----------~~~~~~~v~i~ 62 (280) T Consensus 34 ~VlivG~GGlG~~~~~~La~a-Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i~ 112 (245) T PRK05690 34 RVLVVGLGGLGCAAAQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARLD 112 (245) T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCCC T ss_conf 789987777789999999985-9965999968867888678886459877898879999999997588752263331448 Q ss_pred -CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC Q ss_conf -68578521355047631-010247888764323721576502 Q gi|254780279|r 63 -DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT 103 (280) Q Consensus 63 -~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT 103 (280) T Consensus 113 ~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~~~~P~v~g~~ 155 (245) T PRK05690 113 DDELAALIAAHDLVLDCTDNVATRNQLNAACFAAKKPLVSGAA 155 (245) T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 8899887507888998789999999999999971998798778 |
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.004 Score=41.52 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=63.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----CCCCC-CC-----CCC- Q ss_conf 799989987799999999838997899999648980-------------204553666-----08754-67-----545- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----VGISP-MG-----IKF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----~~~~~-~~-----v~i- 61 (280) T Consensus 30 ~VlvvG~GGLG~~~~~yLa~-aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l~ 108 (355) T PRK05597 30 KVSVIGAGGLGSPALLYLAG-AGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRLD 108 (355) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHCC T ss_conf 68998777668999999998-49975999729992612133775654121797979999999998789974275332157 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf 568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 109 ~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~~PlV~ga~~~~~ 155 (355) T PRK05597 109 WSNALSELADADVILDGSDNFDTRHVASWAAARLGIPHVWASILGFD 155 (355) T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE T ss_conf 77899775288789876788889999999999869987996524467 |
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0029 Score=42.48 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=60.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC-----C--------CHHHCCC-HHH-----HCCCCC-CCC-----CC Q ss_conf 799989987799999999838997899999648-----9--------8020455-366-----608754-675-----45 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRS-----G--------SPLIGQD-VGN-----FVGISP-MGI-----KF 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~-----~--------~~~~g~d-~~~-----~~~~~~-~~v-----~i 61 (280) T Consensus 29 ~VlvvG~GGlGs~~~~~La~~-GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~i 107 (230) T PRK08328 29 KVAVVGVGGLGSPVAYYLAAA-GVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGRL 107 (230) T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHH T ss_conf 789988787899999999984-8986898748787515632554030877477103999999999759950575266442 Q ss_pred -CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf -568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 -SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 -~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 108 ~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~iPlI~g~v~g~~ 155 (230) T PRK08328 108 TEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGMY 155 (230) T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCE T ss_conf 377798620059899998899899999999999839977999966179 |
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0051 Score=40.84 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=54.3 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---CC-------CCCCCCCCCHHHHHC Q ss_conf 799989987799999999838997899999648980204------55366608---75-------467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---IS-------PMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~~-------~~~v~i~~dl~~~~~ 70 (280) T Consensus 5 ~VaViGaG~mG~~IA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~-~~~ 81 (282) T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYDVV-MVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282) T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH-HHC T ss_conf 8999897889999999999-5799389-997998999999999999999999708864266999995263668888-967 Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 355047631010-----2478887643237215765022231358 Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280) Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280) T Consensus 82 ~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is~l 126 (282) T PRK05808 82 DADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLSITEL 126 (282) T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH T ss_conf 599999877563455699999999557998489975887766999 |
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=41.89 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=61.1 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----CCCCC-CC-----CCC Q ss_conf 3799989987799999999838997899999648980-------------204553666-----08754-67-----545 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----VGISP-MG-----IKF 61 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----~~~~~-~~-----v~i 61 (280) T Consensus 22 s~VlvvG~GGLG~~v~~~La~a-Gvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~ 100 (197) T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197) T ss_pred CCEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9599988788999999999983-798699998991877773978603233478885999999999738997289870458 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCCH Q ss_conf 568578521355047631-01024788876432372157650-22231 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFSV 107 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~~ 107 (280) T Consensus 101 ~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~iplI~g~~~g~~G 148 (197) T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFG 148 (197) T ss_pred CHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEE T ss_conf 576899982899999999999999999999998199789998137552 |
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0088 Score=39.21 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=67.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH----------HCCCHHHHCC--CCCCCCCCCCCHHHHHCCCC Q ss_conf 37999899877999999998389978999996489802----------0455366608--75467545568578521355 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL----------IGQDVGNFVG--ISPMGIKFSDNLAMAIQSVD 73 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~----------~g~d~~~~~~--~~~~~v~i~~dl~~~~~~~D 73 (280) T Consensus 1 MkI~ViGlGyVGl~~a~~l-A~~G~~V~g-~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~d 78 (411) T TIGR03026 1 MKIAVIGLGYVGLPLAALL-ADLGHEVTG-VDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411) T ss_pred CEEEEECCCHHHHHHHHHH-HHCCCCEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCC T ss_conf 9799989787799999999-948994899-98999999999779899789898999999986399799878899872099 Q ss_pred EEEEEE-CCC-----HHHHHHH-------HHHHCCCEEEEEEC---CCCHHHH-HHHHHHHC-----CCCCEECCCHH Q ss_conf 047631-010-----2478887-------64323721576502---2231358-99987403-----55521000011 Q gi|254780279|r 74 GIIDFS-SPA-----LTLQSLN-------ISAQHNIVHIIGTT---GFSVKEN-EVISSFAR-----NAPIVKSSNMS 129 (280) Q Consensus 74 ViIDFT-~P~-----~~~~~~~-------~a~~~g~~vViGTT---G~~~e~~-~~l~~~s~-----~~~il~apN~S 129 (280) T Consensus 79 ii~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~STV~pGTt~~i~~~ile~~~~~~~g~df~v~~~PEfl 156 (411) T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411) T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCCCC T ss_conf 999976898666887213899999999997668999899957868681048999988774046668854799683546 |
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=42.75 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=61.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH---------HHCCCHHH---------------HCCCCCCCCCC- Q ss_conf 799989987799999999838997899999648980---------20455366---------------60875467545- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP---------LIGQDVGN---------------FVGISPMGIKF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~---------~~g~d~~~---------------~~~~~~~~v~i- 61 (280) T Consensus 140 ~VlivG~GGLGs~~a~yLA~a-GVG~i~lvD~D~Ve~SNL~RQil~~~~diG~~Ka~~a~~~L~~~Np~i~i~~~~~~l~ 218 (379) T PRK08762 140 RVLLIGAGGLGSPAAFYLAAA-GVGHLRIADHDVVDRSNLQRQILHTEDSVGQPKVDSAAQRIAALNPRVQVEAVQTRVT 218 (379) T ss_pred CEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHCCC T ss_conf 789988875579999999983-7975897628861334501125746433555589999999998689973385021089 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf 568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 219 ~~n~~~li~~~DlViDctDN~~tR~liN~~c~~~~~PlV~ga~~g~~ 265 (379) T PRK08762 219 SSNVEALLQDVDVVVDGADNFPARYLLNDACVKLGKPLVYGAVQRFE 265 (379) T ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE T ss_conf 89999998628899986887788999999999979997999884469 |
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.004 Score=41.55 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=62.3 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHH----H-CCCCC-CCC-----CC- Q ss_conf 79998998779999999983899789999964898-------------020455366----6-08754-675-----45- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGN----F-VGISP-MGI-----KF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~----~-~~~~~-~~v-----~i- 61 (280) T Consensus 43 ~VlvvG~GGLG~p~~~yLaa-aGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l~ 121 (370) T PRK05600 43 RVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLT 121 (370) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHCC T ss_conf 78998887578999999998-28974898738982602105554269766697579999999998789971573566469 Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf 568578521355047631-01024788876432372157650-2223 Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 122 ~~n~~~li~~~DvVvD~tDNf~tRylindaC~~~~~PlV~ga~~~~e 168 (370) T PRK05600 122 AENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFH 168 (370) T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCE T ss_conf 99999876368789977888799999999999849976984532628 |
|
| >PRK07660 consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0081 Score=39.45 Aligned_cols=102 Identities=16% Similarity=0.236 Sum_probs=55.6 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCC---CC-------CCCCCCCCCHHHHHC Q ss_conf 79998998779999999983899789999964898020------455366608---75-------467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVG---IS-------PMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~---~~-------~~~v~i~~dl~~~~~ 70 (280) T Consensus 5 ~VaViGaG~MG~gIA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 81 (283) T PRK07660 5 KIVVIGAGQMGSGIAQVCA-MAGYDVK-VQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLD-CVK 81 (283) T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH-HHC T ss_conf 8999896989999999999-6698189-997988999999999999999998705899899999983587768989-976 Q ss_pred CCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 35504763101-----024788876432372157650222313589 Q gi|254780279|r 71 SVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 71 ~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 82 ~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~ia 127 (283) T PRK07660 82 EADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITEIA 127 (283) T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH T ss_conf 8999998785754442999999996479971898658888732556 |
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0067 Score=40.02 Aligned_cols=105 Identities=11% Similarity=0.205 Sum_probs=61.6 Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HCCCHHHH--CCC----CCCCCCCCCCHHHHHCC Q ss_conf 73-7999899877999999998389978999996489802------04553666--087----54675455685785213 Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL------IGQDVGNF--VGI----SPMGIKFSDNLAMAIQS 71 (280) Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~------~g~d~~~~--~~~----~~~~v~i~~dl~~~~~~ 71 (280) T Consensus 6 ~Ik~VaVIGaG~MG~giAa~~a~-~G~~V~-l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~ 83 (321) T PRK07066 6 DIKTFAAIGSGVIGSGWVARALA-HGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321) T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCC T ss_conf 78879998887888999999994-798599-9969888999999999999999986689963169650146888998635 Q ss_pred CCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 55047631010-----24788876432372157650222313589 Q gi|254780279|r 72 VDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 72 ~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 84 aD~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~is~l~ 128 (321) T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFY 128 (321) T ss_pred CCEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH T ss_conf 998998776659999999999997679886785257657899998 |
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0097 Score=38.91 Aligned_cols=134 Identities=22% Similarity=0.190 Sum_probs=80.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 37999899877999999998389978999996489802-04553666087546754556857852135504763101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~-ga~Via~-~~~~~K~e~a~~lGAd~~i~---~~~~~~~~~~~~~~d~ii~tv~~~~~ 242 (339) T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM-GAEVIAI-TRSEEKLELAKKLGADHVIN---SSDSDALEAVKEIADAIIDTVGPATL 242 (339) T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHHHHHCCCEEEE---CCCCHHHHHHHHHCCEEEECCCHHHH T ss_conf 8999987748999999999986-9969999-57877999999848828997---67811667767347399998774559 Q ss_pred HHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHH Q ss_conf 78887643237215765022231-358999874035552100001156899999999999861 Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSV-KENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYL 146 (280) Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~-e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l 146 (280) T Consensus 243 ~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~--~~d~~e~l~f~~~g~ 303 (339) T COG1064 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT--RADLEEALDFAAEGK 303 (339) T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCEEEEEECCC--HHHHHHHHHHHHHCC T ss_conf 9999986429789997888876666678778632670899972489--999999999998189 |
|
| >PRK09117 consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0063 Score=40.18 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=50.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---C-------CCCCCCCCCCHHHHHC Q ss_conf 799989987799999999838997899999648980204------55366608---7-------5467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280) T Consensus 4 ~VaViGaG~mG~~iA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~-a~~ 80 (282) T PRK09117 4 TVGIIGAGTMGNGIAQACA-VAGLDVV-MVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYD-ALK 80 (282) T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH-HHC T ss_conf 7999897799999999999-6799689-998988999999999999999999706887788999984065679989-975 Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCH Q ss_conf 355047631010-----2478887643237215765022231 Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSV 107 (280) Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280) T Consensus 81 ~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i 122 (282) T PRK09117 81 DADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSISI 122 (282) T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC T ss_conf 599999878588888899999998657998189865876761 |
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0067 Score=40.02 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=61.4 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CC-CCCCCCHHHH-HCCCCEEEEEECCC Q ss_conf 379998998779999999983899789999964898020455366608754-67-5455685785-21355047631010 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MG-IKFSDNLAMA-IQSVDGIIDFSSPA 82 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~-v~i~~dl~~~-~~~~DViIDFT~P~ 82 (280) T Consensus 1 M~IiI~GaG~vG~~La~~Ls~-e~~dV~-vID~d~~~~--~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~D 76 (455) T PRK09496 1 MKIIILGAGQVGGTLAERLVG-ENNDVT-VIDTDEERL--RRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSD 76 (455) T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHH--HHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCH T ss_conf 979999988899999999986-899799-998999999--9988625868999668999999965998699999957971 Q ss_pred HHHH-HHHHHHH-CCCEEEEEECCCCHHHHHHHHHH--HC--CCCCEECCCHHHHHHHHH Q ss_conf 2478-8876432-37215765022231358999874--03--555210000115689999 Q gi|254780279|r 83 LTLQ-SLNISAQ-HNIVHIIGTTGFSVKENEVISSF--AR--NAPIVKSSNMSLGINFLG 136 (280) Q Consensus 83 ~~~~-~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~--s~--~~~il~apN~SiGv~ll~ 136 (280) T Consensus 77 e~Nli~~~lAk~l~g~~~tIaRv~-n~ey~~~~~~~~~~~~lgid~iI~Pe~~~a~~I~~ 135 (455) T PRK09496 77 ETNMVACQIAKSLFGTPTKIARIR-NPEYLREYPKLFNKEALGIDVLISPELLVAREIAR 135 (455) T ss_pred HHHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHH T ss_conf 899999999998669982499974-77764304442001147864898782999999999 |
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=38.25 Aligned_cols=124 Identities=16% Similarity=0.250 Sum_probs=61.6 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHC------CCCEEEEEEECCCCH--HH--CCCHHHHCCCCCCCCCCCCCHHHHHCCC Q ss_conf 8737999899-87799999999838------997899999648980--20--4553666087546754556857852135 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNN------PSITLHSIIVRSGSP--LI--GQDVGNFVGISPMGIKFSDNLAMAIQSV 72 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~------~~~eLv~~i~~~~~~--~~--g~d~~~~~~~~~~~v~i~~dl~~~~~~~ 72 (280) T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l-~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~a 79 (322) T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVIL-QLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDA 79 (322) T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEE-EEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCC T ss_conf 970999989996899999999971113079972699-9975757566676577445326765458779748878983788 Q ss_pred CEEEEEE-CC-CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-CCCCCEECCCHHHHHHHHHHHH Q ss_conf 5047631-01-024788876432372157650222313589998740-3555210000115689999999 Q gi|254780279|r 73 DGIIDFS-SP-ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA-RNAPIVKSSNMSLGINFLGFLV 139 (280) Q Consensus 73 DViIDFT-~P-~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s-~~~~il~apN~SiGv~ll~~l~ 139 (280) T Consensus 80 DvVvitaG~prkPG~tR~DLl~~-Na~I-------~~~~~~~i~~~a~p~~~vivvsNP---vd~~~~v~ 138 (322) T cd01338 80 DWALLVGAKPRGPGMERADLLKA-NGKI-------FTAQGKALNDVASRDVKVLVVGNP---CNTNALIA 138 (322) T ss_pred CEEEEECCCCCCCCCCHHHHHHH-HHHH-------HHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHH T ss_conf 78999368789989818999998-6899-------999999999757988389995781---88899999 |
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2711 consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.019 Score=36.89 Aligned_cols=129 Identities=19% Similarity=0.314 Sum_probs=78.3 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHC--CCHHHHCC-----------CC-CCCCCCCC Q ss_conf 8873799989987799999999838997-----899999648980204--55366608-----------75-46754556 Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSI-----TLHSIIVRSGSPLIG--QDVGNFVG-----------IS-PMGIKFSD 63 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~-----eLv~~i~~~~~~~~g--~d~~~~~~-----------~~-~~~v~i~~ 63 (280) T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee-~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372) T KOG2711 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEE-EINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372) T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC T ss_conf 0753799981680899999998652540556673036777501-337705789987515563423367865997767652 Q ss_pred CHHHHHCCCCEEEEEECCCHHHH-H---HHHHHHCCCEEEEEECCCCHH--H--HHHHHHH---HCCCC--CEECCCHHH Q ss_conf 85785213550476310102478-8---876432372157650222313--5--8999874---03555--210000115 Q gi|254780279|r 64 NLAMAIQSVDGIIDFSSPALTLQ-S---LNISAQHNIVHIIGTTGFSVK--E--NEVISSF---ARNAP--IVKSSNMSL 130 (280) Q Consensus 64 dl~~~~~~~DViIDFT~P~~~~~-~---~~~a~~~g~~vViGTTG~~~e--~--~~~l~~~---s~~~~--il~apN~Si 130 (280) T Consensus 98 dl~ea~~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~ 176 (372) T KOG2711 98 DLVEAAKDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS 176 (372) T ss_pred HHHHHHCCCCEEE-EECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCEEEHHHHHHHHHCCCCEEECCCCHHH T ss_conf 3998843388899-948715479999998542579980788540414168888446369999998689703214774589 Q ss_pred HHH Q ss_conf 689 Q gi|254780279|r 131 GIN 133 (280) Q Consensus 131 Gv~ 133 (280) T Consensus 177 EVa 179 (372) T KOG2711 177 EVA 179 (372) T ss_pred HHH T ss_conf 997 |
|
| >pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0079 Score=39.51 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=56.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HCCCHHHHCCCC----------CCCCCCCCCHHHHHC Q ss_conf 7999899877999999998389978999996489802------045536660875----------467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL------IGQDVGNFVGIS----------PMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~------~g~d~~~~~~~~----------~~~v~i~~dl~~~~~ 70 (280) T Consensus 1 kV~ViGaG~mG~~iA~~~a~-~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~ 77 (180) T pfam02737 1 KVAVIGAGTMGAGIAQVFAR-AGLEVV-LVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADA-V 77 (180) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH-C T ss_conf 98999978899999999996-799399-99799899999999999989999972567567699998524105889997-5 Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 355047631010-----24788876432372157650222313589 Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 78 ~adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is~la 123 (180) T pfam02737 78 DADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELA 123 (180) T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHHHHH T ss_conf 8999999251768899999999997430330887526768999999 |
This family also includes lambda crystallin. |
| >pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0057 Score=40.47 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=70.9 Q ss_pred EEEEEECCC-HHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CC Q ss_conf 379998998-77999999998389978999996489802045--536660875467545568578521355047631-01 Q gi|254780279|r 6 MRISVLGGG-RMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SP 81 (280) Q Consensus 6 IkV~I~GaG-kMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P 81 (280) T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~~ 80 (142) T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGVP 80 (142) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCCC T ss_conf 98999898778999999999747966347885057764117999986144347887697488388837899999815777 Q ss_pred C-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH Q ss_conf 0-24788876432372157650222313589998740355521000011568999999999998 Q gi|254780279|r 82 A-LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAE 144 (280) Q Consensus 82 ~-~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~ 144 (280) T Consensus 81 ~k~g~~R~dl-l~~Na~I~-------~~i~~~i~~~~p~~ivivvtNP---vDvmt~~~~~~sg 133 (142) T pfam00056 81 RKPGMTRLDL-LNRNAGIF-------KDIVPAIAKSAPDAIVLVVSNP---VDILTYIAWKVSG 133 (142) T ss_pred CCCCCCHHHH-HHHHHHHH-------HHHHHHHHHHCCCEEEEEECCC---HHHHHHHHHHHHC T ss_conf 8999877899-99746999-------9999999976998199994594---6889999999978 |
L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=38.41 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=60.4 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC---------------HHHCCCHHHHC-----CCCC-CCCC----- Q ss_conf 79998998779999999983899789999964898---------------02045536660-----8754-6754----- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS---------------PLIGQDVGNFV-----GISP-MGIK----- 60 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~---------------~~~g~d~~~~~-----~~~~-~~v~----- 60 (280) T Consensus 21 ~VlVvG~GGLG~~v~~~La~-aGVg~i~ivD~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~ 99 (198) T cd01485 21 KVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 89998778899999999997-49986999959963533577575026541116872999999999977999779998224 Q ss_pred ---CCCCHHHHHCCCCEEEEEEC-CCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf ---55685785213550476310-1024788876432372157650-2223 Q gi|254780279|r 61 ---FSDNLAMAIQSVDGIIDFSS-PALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 61 ---i~~dl~~~~~~~DViIDFT~-P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 100 ~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c~~~~iPlI~ga~~G~~ 150 (198) T cd01485 100 SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLI 150 (198) T ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE T ss_conf 457786899998489999999999999999999999929988999745668 |
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=37.90 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=56.7 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---C-------CCCCCCCCCC Q ss_conf 998873799989987799999999838997899999648980204------55366608---7-------5467545568 Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---I-------SPMGIKFSDN 64 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~-------~~~~v~i~~d 64 (280) T Consensus 1 M~~-ik~VaViGAG~MG~giA~~~a-~~G~~V~-l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~ 77 (292) T PRK07530 1 MMA-IKKVGVIGAGQMGNGIAHVCA-LAGYDVL-LNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATT 77 (292) T ss_pred CCC-CCEEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC T ss_conf 999-888999896699999999999-6799689-9979889999999999999999997068888999999840777689 Q ss_pred HHHHHCCCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHH Q ss_conf 57852135504763101-----024788876432372157650222313589 Q gi|254780279|r 65 LAMAIQSVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280) Q Consensus 65 l~~~~~~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 78 ~~~-~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~la 128 (292) T PRK07530 78 LDD-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISITRLA 128 (292) T ss_pred HHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH T ss_conf 889-664999998884745878989999986269884898758887505666 |
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.046 Score=34.25 Aligned_cols=122 Identities=16% Similarity=0.277 Sum_probs=67.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHCCCCEEEEEECCCHH Q ss_conf 379998998779999999983899789999964898020455366608754675455-6857852135504763101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~d~vv--~SPGi~ 80 (468) T PRK04690 9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEV---REVGAL---ADAALLVETEASAQRLAAFEVVV--KSPGIS 80 (468) T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCC---HHHHHH---CCCCCEEECCCCHHHHHCCCEEE--ECCCCC T ss_conf 9799983478799999999966990499972883246---466762---04575674677855761488999--899579 Q ss_pred --HHHHHHHHHCCCEE--------------------EEEECCCCHHH--HHHHHHHHC--CCCCEECCCHHHHHHHHHH Q ss_conf --78887643237215--------------------76502223135--899987403--5552100001156899999 Q gi|254780279|r 85 --LQSLNISAQHNIVH--------------------IIGTTGFSVKE--NEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 85 --~~~~~~a~~~g~~v--------------------ViGTTG~~~e~--~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 81 ~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN--IG~P~~~~ 157 (468) T PRK04690 81 PYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGQPLLEV 157 (468) T ss_pred CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHH T ss_conf 868999999987994886899999875311256787899969985899999999999857998289867--76446765 |
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=37.47 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=52.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCCC---C-------CCCCCCCCCHHHHHC Q ss_conf 79998998779999999983899789999964898020------4553666087---5-------467545568578521 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVGI---S-------PMGIKFSDNLAMAIQ 70 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~~---~-------~~~v~i~~dl~~~~~ 70 (280) T Consensus 4 kV~ViGaG~mG~~IA~~~a-~~G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~~ 80 (284) T PRK07819 4 RVGVVGAGQMGSGIAEVCA-RAGVDVL-VFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLED-LA 80 (284) T ss_pred EEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH-HC T ss_conf 7999897789999999999-5799089-9979889999999999999999987278987999999963706689999-76 Q ss_pred CCCEEEEEECCCHH--HHHHHHHHH----CCCEEEEEECCCCHHHH Q ss_conf 35504763101024--788876432----37215765022231358 Q gi|254780279|r 71 SVDGIIDFSSPALT--LQSLNISAQ----HNIVHIIGTTGFSVKEN 110 (280) Q Consensus 71 ~~DViIDFT~P~~~--~~~~~~a~~----~g~~vViGTTG~~~e~~ 110 (280) T Consensus 81 ~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is~l 126 (284) T PRK07819 81 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 126 (284) T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH T ss_conf 5999999073878888999999997428998599965888761344 |
|
| >KOG1255 consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=38.20 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=85.4 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE Q ss_conf 88737999899-8779999999983899789999964898020455366608754675455685785213--55047631 Q gi|254780279|r 3 QSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280) Q Consensus 3 ~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280) T Consensus 36 nk~TkVi~QGfTGKqgTFHs~q~~e-YgTk~VgG~~pkK-----------~Gt~HLG~PVF~sV~eA~~~t~a~AsvIyV 103 (329) T KOG1255 36 NKDTKVICQGFTGKQGTFHSQQALE-YGTKVVGGVNPKK-----------GGTTHLGLPVFNSVAEAKKETGADASVIYV 103 (329) T ss_pred CCCCEEEEECCCCCCCCEEHHHHHH-HCCCEEECCCCCC-----------CCCCCCCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 5886599832357765320788887-2771330468885-----------753212842566799998740898349980 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHH--HCCCCCEECCCHH Q ss_conf 010247888764323721576502-2231358999874--0355521000011 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSF--ARNAPIVKSSNMS 129 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~--s~~~~il~apN~S 129 (280) T Consensus 104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCP 156 (329) T KOG1255 104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCP 156 (329) T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCC T ss_conf 78278899999885448679996279855668999999854333422079998 |
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.029 Score=35.60 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=68.0 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC---CCCEEEEEE-CCC Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521---355047631-010 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ---SVDGIIDFS-SPA 82 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~---~~DViIDFT-~P~ 82 (280) T Consensus 172 ~VlV~G~G~iGl~~~~~ak~~-Ga~~Vi~~d~~~~rl---~~a~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvie~~G~~~ 247 (343) T PRK09880 172 RVFISGVGPIGCLIVSAVKTL-GAAEIVCADLSPRSL---SLARQMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPS 247 (343) T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCHHHH---HHHHHCCCCEEECCCCCCHHHHHHHCCCCCEEEEECCCHH T ss_conf 899984776799999999986-998799997978999---9999729979987987439999963699778999219999 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCH Q ss_conf 2478887643237215765022231358999874035552100001 Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 248 ~~~~al~~~r~gG~iv~vG~~~~~-~~~~~~~l~~kei~i~Gs~~~ 292 (343) T PRK09880 248 SVNTCLEVTRAKGVMVQVGMGGAM-PEFPMMTLISKEISLKGSFRF 292 (343) T ss_pred HHHHHHHHCCCCEEEEEEECCCCC-CCCCHHHHHHCCCEEEEECCC T ss_conf 999999737798399999727988-870899998588499990486 |
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.037 Score=34.95 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=60.5 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCH-HHHHCCCCEEEEEEC Q ss_conf 8737999899877999999998389978999996489802045536660875467545--5685-785213550476310 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNL-AMAIQSVDGIIDFSS 80 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl-~~~~~~~DViIDFT~ 80 (280) T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~---~a~-----~lgv~d~~~~~~~~~~~~~aDlVivavP 73 (279) T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLK---AAL-----ELGVIDELTVAGLAEAAAEADLVIVAVP 73 (279) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH---HHH-----HCCCCHHHCCCHHHHHCCCCCEEEEECC T ss_conf 86489998774677999999997698479972477467787---766-----3585301001155541356998999577 Q ss_pred CCHHHHHHHHHHH-CCCE-EEEEECCCCHHHHHHHHHHH Q ss_conf 1024788876432-3721-57650222313589998740 Q gi|254780279|r 81 PALTLQSLNISAQ-HNIV-HIIGTTGFSVKENEVISSFA 117 (280) Q Consensus 81 P~~~~~~~~~a~~-~g~~-vViGTTG~~~e~~~~l~~~s 117 (280) T Consensus 74 i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279) T COG0287 74 IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279) T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHC T ss_conf 889999999863037999889736420178999999746 |
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.023 Score=36.38 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=51.9 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CC---CHHHHCC---CC-------CCCCCCCCCHHH Q ss_conf 79998998779999999983899789999964898020------45---5366608---75-------467545568578 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQ---DVGNFVG---IS-------PMGIKFSDNLAM 67 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~---d~~~~~~---~~-------~~~v~i~~dl~~ 67 (280) T Consensus 5 ~VaViGaG~MG~gIA~~~a-~~G~~V~-l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~- 81 (291) T PRK06035 5 VIGVVGSGVMGQGIAQVFA-RTGYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE- 81 (291) T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH- T ss_conf 8999887688999999999-5899889-998998999999999997189999998668999999999983664358888- Q ss_pred HHCCCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 521355047631010-----2478887643237215765022231358 Q gi|254780279|r 68 AIQSVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280) Q Consensus 68 ~~~~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280) T Consensus 82 ~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~i 129 (291) T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEI 129 (291) T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH T ss_conf 976599999888388999999999999658998379860887786999 |
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=38.42 Aligned_cols=100 Identities=10% Similarity=0.192 Sum_probs=58.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--------HHHCCCHHH----H----CC-CC-CC-----CCCC-C Q ss_conf 79998998779999999983899789999964898--------020455366----6----08-75-46-----7545-5 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--------PLIGQDVGN----F----VG-IS-PM-----GIKF-S 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--------~~~g~d~~~----~----~~-~~-~~-----~v~i-~ 62 (280) T Consensus 29 ~VlivG~GGLG~~~a~~La~a-GVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~~ 107 (209) T PRK08644 29 KVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKIDE 107 (209) T ss_pred CEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCH T ss_conf 689988878899999999993-8981899889990154110375678775975699999998744898289997224898 Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHH-CCCEEEEEE--CCCCH Q ss_conf 68578521355047631-01024788876432-372157650--22231 Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQ-HNIVHIIGT--TGFSV 107 (280) Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~-~g~~vViGT--TG~~~ 107 (280) T Consensus 108 ~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~~plV~as~i~g~g~ 156 (209) T PRK08644 108 DNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKGKKVVSASGMAGYGD 156 (209) T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECC T ss_conf 9999998579999999999999999999999977996899961215757 |
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=37.06 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=61.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHHCC-----CC-CCCC-----CCC Q ss_conf 79998998779999999983899789999964898-------------020455366608-----75-4675-----455 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNFVG-----IS-PMGI-----KFS 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~~~-----~~-~~~v-----~i~ 62 (280) T Consensus 1 KVlvvGaGglG~e~lk~La~~-Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312) T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312) T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 989988888899999999982-8985999719922610146682768221887099999999998888967998616766 Q ss_pred CC--HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEE-EECCCCH Q ss_conf 68--578521355047631-010247888764323721576-5022231 Q gi|254780279|r 63 DN--LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHII-GTTGFSV 107 (280) Q Consensus 63 ~d--l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vVi-GTTG~~~ 107 (280) T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~~~PlIegGt~G~~G 128 (312) T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312) T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEE T ss_conf 8643498896299999766789999999999998399759720246413 |
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.046 Score=34.25 Aligned_cols=129 Identities=15% Similarity=0.231 Sum_probs=71.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHH-HCCCCEEEEEECCC Q ss_conf 379998998779999999983899789999964898020455366608754--675455685785-21355047631010 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMA-IQSVDGIIDFSSPA 82 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~-~~~~DViIDFT~P~ 82 (280) T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv~-Id~d~~~~~~-~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225) T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVVL-IDRDEERVEE-FLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225) T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE-EECCHHHHHH-HHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC T ss_conf 9899989857889999999878-990899-9768899998-632000449999268898999867986389999980886 Q ss_pred HHHH-HHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH Q ss_conf 2478-8876432-37215765022231358999874035552100001156899999999 Q gi|254780279|r 83 LTLQ-SLNISAQ-HNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE 140 (280) Q Consensus 83 ~~~~-~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~ 140 (280) T Consensus 78 ~~N~i~~~la~~~~gv~~viar~~-~~~~~~~~~~~g--~~~ii~Pe~~~~~~l~~~i~~ 134 (225) T COG0569 78 EVNSVLALLALKEFGVPRVIARAR-NPEHEKVLEKLG--ADVIISPEKLAAKRLARLIVT 134 (225) T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHCC--CCEEECHHHHHHHHHHHHHCC T ss_conf 799999999998739984999956-941677898679--948975589999999998538 |
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.014 Score=37.90 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=63.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH---------HCCCHH------HH----CCCCCCCCCC------ Q ss_conf 7999899877999999998389978999996489802---------045536------66----0875467545------ Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL---------IGQDVG------NF----VGISPMGIKF------ 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~---------~g~d~~------~~----~~~~~~~v~i------ 61 (280) T Consensus 23 ~VLiiGaGgLGs~~~~~LA~-AGVG~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~v~a~~~~ 101 (210) T TIGR02356 23 HVLIIGAGGLGSPAALYLAA-AGVGTITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIRVTALKER 101 (210) T ss_pred CEEEEEECHHHHHHHHHHHH-CCCCEEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 65999726145689999982-88837899851677010120554303244201315899999999853889689985420 Q ss_pred --CCCHHHHHCCCC--EEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC Q ss_conf --568578521355--047631-01024788876432372157650-2223 Q gi|254780279|r 62 --SDNLAMAIQSVD--GIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280) Q Consensus 62 --~~dl~~~~~~~D--ViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280) T Consensus 102 vt~~~~~~~i~~~DPdlVlDc~DNf~tryliNdaC~~~~~PlI~aavvG~~ 152 (210) T TIGR02356 102 VTAENLELLIENVDPDLVLDCTDNFATRYLINDACQALGIPLISAAVVGFE 152 (210) T ss_pred CCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEC T ss_conf 277999999623899689615668778899999999847986999887635 |
This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli.. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.049 Score=34.09 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=52.6 Q ss_pred EEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEEECCC-CHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE------ Q ss_conf 37999899-87799999999838-9978999996489-802045536660875467545568578521355047------ Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNN-PSITLHSIIVRSG-SPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII------ 76 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~-~~~eLv~~i~~~~-~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI------ 76 (280) T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~~~~~~~~~~~~l~~adiVvitAG~~ 80 (312) T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEECCCHHHHHCCCCEEEECCCCC T ss_conf 98999989986999999999828987774999758888610565654787546653461698678717999999878989 Q ss_pred -----------------------------------EEECCCHHHHHH-HH-HHH---CCCEEEEEECCCCHHHHH Q ss_conf -----------------------------------631010247888-76-432---372157650222313589 Q gi|254780279|r 77 -----------------------------------DFSSPALTLQSL-NI-SAQ---HNIVHIIGTTGFSVKENE 111 (280) Q Consensus 77 -----------------------------------DFT~P~~~~~~~-~~-a~~---~g~~vViGTTG~~~e~~~ 111 (280) T Consensus 81 rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvsNPvD~mt~ia~~~~k~~g~~~~~rv~G~t~LDsaR~r 155 (312) T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155 (312) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH T ss_conf 985898899999878999999998872089718999548327789999999998389980113333128899999 |
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.024 Score=36.23 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=67.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCC-CCCHHHHHCCCCEEEEEE-CCCH Q ss_conf 99989987799999999838997899999648980204--5536660875467545-568578521355047631-0102 Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKF-SDNLAMAIQSVDGIIDFS-SPAL 83 (280) Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i-~~dl~~~~~~~DViIDFT-~P~~ 83 (280) T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~-~~~daDvvVitaG~~rk 79 (300) T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAADADIVVITAGAPRK 79 (300) T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHH-HHCCCCEEEECCCCCCC T ss_conf 98989688999999999867998879998189981156888877256346885398279889-96799999987898999 Q ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf -478887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 84 -TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 84 -~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 80 pg~tR~dl-l~~Na~I~-------k~i~~~i~~~~p~~ivivvtNP---vDv~t~~~~k~s 129 (300) T cd00300 80 PGETRLDL-INRNAPIL-------RSVITNLKKYGPDAIILVVSNP---VDILTYVAQKLS 129 (300) T ss_pred CCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHHH T ss_conf 79988999-99888999-------9999999841997189985796---699999999961 |
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.035 Score=35.08 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=54.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEEE- Q ss_conf 799989987799999999838997899999648980204553666087546754556857852----1--355047631- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDFS- 79 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDFT- 79 (280) T Consensus 179 ~VlV~GaG~iGl~a~~~a-k~~Ga~~Vi~~d~~~~rl---~~A~~lGa~~~i~~~~~~~~~~v~~~t~g~G~Dvvie~~G 254 (358) T TIGR03451 179 SVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRKL---EWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254 (358) T ss_pred EEEEECCCHHHHHHHHHH-HHCCCCEEEEEECCHHHH---HHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCC T ss_conf 899967376999999999-983991899991988999---9999659909973998788999999858988749999999 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC Q ss_conf 010247888764323721576502 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT 103 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT 103 (280) T Consensus 255 ~~~~~~~al~~~~~gG~iv~~G~~ 278 (358) T TIGR03451 255 RPETYKQAFYARDLAGTVVLVGVP 278 (358) T ss_pred CHHHHHHHHHHHCCCCEEEEEECC T ss_conf 989999999976279699999225 |
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.044 Score=34.43 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=63.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEEE- Q ss_conf 737999899877999999998389978999996489802045--536660875--467545568578521355047631- Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDFS- 79 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDFT- 79 (280) T Consensus 7 ~~KV~IIGaG~VG~~~A~~l~~~~l~ei-vLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~-~~~aDiVVitAG 84 (322) T PTZ00082 7 RKKISLIGSGNIGGVMAYLIQLKNLADV-VLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDD-IAGSDVVIVTAG 84 (322) T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHH-HCCCCEEEECCC T ss_conf 9829998969899999999963899779-99978898008899987663644688857983799999-779999998988 Q ss_pred CC---CHHHH---HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf 01---02478---887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 80 SP---ALTLQ---SLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 80 ~P---~~~~~---~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 85 ~~~kpg~t~~~~~R~dL-l~~Na~I~-------~~i~~~i~~~~p~aiiivvsNP---vDv~t~~~~k~s 143 (322) T PTZ00082 85 LAKAPGKSDDEWNRDDL-LPLNAKIM-------IEVGENIKKYCPNAFVIVITNP---LDVMVQLLLKVS 143 (322) T ss_pred CCCCCCCCCCCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHHH T ss_conf 87789998765678899-99889999-------9999998740998359974892---699999999976 |
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.037 Score=34.88 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=58.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 7999899877999999998389-978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 2 ~V~IiGlGLIGgSlalalk~~g~~~~i~-~~d~~~~~l-----~~A~~~g~-id~~~~~~~~~~~~~DlVvlatPv~~~~ 74 (357) T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFII-GYDPSGAQL-----ARALGFGV-IDELAEDLARAAAEADLIVLAVPVDATA 74 (357) T ss_pred EEEEEEECHHHHHHHHHHHHCCCCEEEE-EECCCHHHH-----HHHHHCCC-CCEECCCHHHHCCCCCEEEECCCHHHHH T ss_conf 7999977878999999998549976999-966999999-----99986899-7730488767156799999949999999 Q ss_pred HHHHHHHHCCCEEEEEECCCCHH Q ss_conf 88876432372157650222313 Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGFSVK 108 (280) Q Consensus 86 ~~~~~a~~~g~~vViGTTG~~~e 108 (280) T Consensus 75 ~~l~~l~~l~~~~ivTDVgSvK~ 97 (357) T PRK06545 75 ALLAELADLAPGVIVTDVGSVKG 97 (357) T ss_pred HHHHHHHHCCCCCEEEECCCCHH T ss_conf 99999872389978997510079 |
|
| >pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.017 Score=37.23 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=66.9 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 130 ~~l~iiGaG~QA~~~l~al~~v~~i~~v~v~~r~~~~~--~~f~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~s~~~- 206 (312) T pfam02423 130 STLAIIGAGAQAEFQAEALSAVLPIEEIRIYDRDPEAA--EKFARNLQGKGFEIVACTSAEEAVEGADIVVTVTPDKEF- 206 (312) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHCCCCEEEECCHHHHHHCCCEEEEEECCCCC- T ss_conf 57999646253899999999619976899996898999--999999983499659948999997149989997359977- Q ss_pred HHH-HHHHHCCCEEE-EEECCCCHHH Q ss_conf 888-76432372157-6502223135 Q gi|254780279|r 86 QSL-NISAQHNIVHI-IGTTGFSVKE 109 (280) Q Consensus 86 ~~~-~~a~~~g~~vV-iGTTG~~~e~ 109 (280) T Consensus 207 P~~~~~~l~~G~hv~~vGs~~p~~~E 232 (312) T pfam02423 207 PILKAEWVKPGVHINAVGADCPGKTE 232 (312) T ss_pred CCCCHHHCCCCCEEEEECCCCCCCCC T ss_conf 50077883898689972699997043 |
This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.027 Score=35.87 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=60.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----CCCCCCCCC-------CC Q ss_conf 79998998779999999983899789999964898-------------0204553666----087546754-------55 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----VGISPMGIK-------FS 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~~~~~~~v~-------i~ 62 (280) T Consensus 1 KVlvvGaGglGce~~k~La~~-Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~ 79 (234) T cd01484 1 KVLLVGAGGIGCELLKNLALM-GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234) T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 989994888799999999983-9986999759900567701302446442688229999999998789977999805568 Q ss_pred C--C-HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEE-ECCCCH Q ss_conf 6--8-578521355047631-0102478887643237215765-022231 Q gi|254780279|r 63 D--N-LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIG-TTGFSV 107 (280) Q Consensus 63 ~--d-l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViG-TTG~~~ 107 (280) T Consensus 80 ~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~~~PLIegGt~G~~G 129 (234) T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234) T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEE T ss_conf 62105798885299999885788899999999998099859720246147 |
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >KOG0172 consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0091 Score=39.08 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=77.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC---CHHHHHCCCCEEEEEECCCH Q ss_conf 799989987799999999838997899999648980204553666087546754556---85785213550476310102 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD---NLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~---dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 4 ~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~---~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSL-lP~t 79 (445) T KOG0172 4 GVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLK---DAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISL-LPYT 79 (445) T ss_pred CEEEECCCCCCCHHHHHHHHCCCCEEEEEHHHHH---HHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEE-CCCH T ss_conf 2699537531334788874167823898634677---89998427886506777425178898651541126640-4301 Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE Q ss_conf 4-788876432372157650222313589998740355521 Q gi|254780279|r 84 T-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123 (280) Q Consensus 84 ~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il 123 (280) T Consensus 80 ~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~t 118 (445) T KOG0172 80 FHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGST 118 (445) T ss_pred HHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCCCCE T ss_conf 33889988888640354--1103688898621121478855 |
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.03 Score=35.58 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=59.6 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----CCCCC-C-----CCC- Q ss_conf 379998998779999999983899789999964898-------------0204553666-----08754-6-----754- Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----VGISP-M-----GIK- 60 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----~~~~~-~-----~v~- 60 (280) T Consensus 28 s~VlVvG~GGlGs~~a~~LAr-aGVG~i~lvD~D~velSNLnRQi~~~~~diG~~Kveva~e~l~~INP~v~V~~~~~~l 106 (287) T PRK08223 28 SRVAIAGLGGVGGVHLLTLAR-LGIGKFNIADFDVFELVNSNRQYGAMMSSNGRPKVEVMREIALDINPELEIRAFPEGI 106 (287) T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 968999367557999999998-2897599974998463440222344743449858999999999869898799958789 Q ss_pred CCCCHHHHHCCCCEEEEEEC---CCHHHHHHHHHHHCCCEEEEEEC-CCC Q ss_conf 55685785213550476310---10247888764323721576502-223 Q gi|254780279|r 61 FSDNLAMAIQSVDGIIDFSS---PALTLQSLNISAQHNIVHIIGTT-GFS 106 (280) Q Consensus 61 i~~dl~~~~~~~DViIDFT~---P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280) T Consensus 107 t~~N~~~~l~~~DvVvDg~DnF~~~tR~ll~~ac~~~giP~v~~a~l~f~ 156 (287) T PRK08223 107 GKENLDTFLDGVDVYVDGLDFFVFDIRRLLFREAQARGIPALTAAPLGFS 156 (287) T ss_pred CHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 98999999867999997966788318999999999859984983154103 |
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.034 Score=35.21 Aligned_cols=92 Identities=16% Similarity=0.293 Sum_probs=56.6 Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC-----CCCC-CCCHHHHHCCCCEEEEEE Q ss_conf 7999899-87799999999838997899999648980204553666087546-----7545-568578521355047631 Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM-----GIKF-SDNLAMAIQSVDGIIDFS 79 (280) Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-----~v~i-~~dl~~~~~~~DViIDFT 79 (280) T Consensus 3 kILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~-d~~~~~-----~~~~~~~~~~~~~~gDi~~~~~~~~~~~~~~D~V~HlA 76 (347) T PRK11908 3 KVLILGVNGFIGHHLTKRILETTDWEVYGM-DMQTDR-----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVVLPLV 76 (347) T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCC-----HHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEH T ss_conf 899975743899999999998289789999-799763-----67755799859997754469999997660598897520 Q ss_pred ----------CC--------CHHHHHHHHHHHCCCEEEEEECC Q ss_conf ----------01--------02478887643237215765022 Q gi|254780279|r 80 ----------SP--------ALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 80 ----------~P--------~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 77 a~~~~~~~~~~p~~~~~~nv~~t~~ll~~~~~~~~r~if~SS~ 119 (347) T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347) T ss_pred HCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC T ss_conf 0036488886889999999999999999999739838962661 |
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.047 Score=34.21 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=63.9 Q ss_pred EEEECC-CHHHHHHHHHHHHCCC---CEEEEEEECCCCHHHC--CCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEE-E Q ss_conf 999899-8779999999983899---7899999648980204--553666087-546754556857852135504763-1 Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPS---ITLHSIIVRSGSPLIG--QDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDF-S 79 (280) Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~---~eLv~~i~~~~~~~~g--~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDF-T 79 (280) T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el-~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag 79 (263) T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263) T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECC T ss_conf 98987797799999999982899999889-99958987208799999854523578739974873898379989999057 Q ss_pred CCCHH-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH Q ss_conf 01024-7888764323721576502223135899987403555210000115689999999999 Q gi|254780279|r 80 SPALT-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETA 142 (280) Q Consensus 80 ~P~~~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~ 142 (280) T Consensus 80 ~~~k~g~~R~-dll~~N~~I~-------~~i~~~i~~~~p~a~iivvtNP---vdv~t~~~~~~ 132 (263) T cd00650 80 VGRKPGMGRL-DLLKRNVPIV-------KEIGDNIEKYSPDAWIIVVSNP---VDIITYLVWRY 132 (263) T ss_pred CCCCCCCCHH-HHHHCHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHH T ss_conf 7889998765-6640328899-------9998888732998369973894---89999999983 |
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.037 Score=34.91 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=55.0 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEEEC-- Q ss_conf 37999899-877999999998389978999996489802045536660875--4675455685785213550476310-- Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDFSS-- 80 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDFT~-- 80 (280) T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~-G~~V~~-l~r~~~~~~~--~~~-~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa~~ 75 (328) T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLER-GEEVRV-LVRPTSDRRN--LEG-LDVEIVEGDLRDPASLRKALAGCRALFHVAADY 75 (328) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EECCCCCHHH--HCC-CCCEEEEEECCCHHHHHHHHHCCCEEEEECCCC T ss_conf 94999867779999999999978-498999-9899986556--521-797799820799999999971785897613423 Q ss_pred ------C--------CHHHHHHHHHHHCCCE-EEEEEC Q ss_conf ------1--------0247888764323721-576502 Q gi|254780279|r 81 ------P--------ALTLQSLNISAQHNIV-HIIGTT 103 (280) Q Consensus 81 ------P--------~~~~~~~~~a~~~g~~-vViGTT 103 (280) T Consensus 76 ~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS 113 (328) T TIGR03466 76 RLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSS 113 (328) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 44679989999999999999999999729874315633 |
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK10083 putative dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.039 Score=34.73 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=66.6 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC----CCCEEEEEE-CC Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521----355047631-01 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ----SVDGIIDFS-SP 81 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~----~~DViIDFT-~P 81 (280) T Consensus 163 ~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl---~~A~~~GAd~vi~~~~~~~~~~~~~~G~~~dvvid~~g~~ 239 (339) T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERL---ALAKESGADWVINNAQESLAEALAEKGVKPTLIFDAACHP 239 (339) T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHH---HHHHHCCCCEEECCCCCCHHHHHHHCCCCCCEEEECCCCH T ss_conf 8999587659999999999856997899937989999---9999719989984887669999985399961999666688 Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf 02478887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 240 ~~~~~a~~~~~~gG~iv~~G~~~~-~~~i~~~~~~~k~l~i~-gs~~--~~~~~~~~~~li~ 297 (339) T PRK10083 240 SILEEAVTLASPAARIVLMGFSSE-PSEIVQQGITGKELTIY-SSRL--NANKFPVVIDWLA 297 (339) T ss_pred HHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHHHCEEEEE-ECCC--CHHHHHHHHHHHH T ss_conf 999999998518809999925899-87536888742678999-9226--8889999999998 |
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.04 Score=34.71 Aligned_cols=130 Identities=17% Similarity=0.110 Sum_probs=74.4 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH---H---CCCCEEEEEE- Q ss_conf 79998998779999999983899789999964898020455366608754675455685785---2---1355047631- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA---I---QSVDGIIDFS- 79 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~---~---~~~DViIDFT- 79 (280) T Consensus 123 ~V~V~G~G~iGl~~~~~a~-~~Ga~~Vi~~d~~~~rl---~~a~~~Ga~~~-i~-~~~~~~~~~~~~~g~g~D~vie~~G 196 (280) T TIGR03366 123 RVLVVGAGMLGLTAAAAAA-AAGAARVVAADPSPDRR---ELALSFGATAL-AE-PEVLAERQGGLQNGRGVDVALEFSG 196 (280) T ss_pred EEEEEECCHHHHHHHHHHH-HCCCCEEEEEECCHHHH---HHHHHCCCCEE-EC-CCCHHHHHHHHHCCCCCCEEEECCC T ss_conf 8999907868999999999-84998799991998999---99997399898-37-7577999999727888709998789 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH Q ss_conf 010247888764323721576502223-13589998740355521000011568999999999998 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFS-VKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAE 144 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~-~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~ 144 (280) T Consensus 197 ~~~~~~~a~~~l~~gG~iv~vG~~~~~~~~~~~~~~l~~ke~~i~Gs~~~~~~~--~~~ai~ll~~ 260 (280) T TIGR03366 197 ATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRH--LDQAVRFLAA 260 (280) T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHHHHHHCCEEEEEEECCCHHH--HHHHHHHHHH T ss_conf 889999999986049899998046899841478999986987999960689899--9999999997 |
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.093 Score=32.19 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=65.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH-- Q ss_conf 799989987799999999838997899999648980204553666087546754556857852135504763101024-- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT-- 84 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~-- 84 (280) T Consensus 14 ~V~V~GlG~sG~a~a~~L~-~~G~~v~-~~D~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~d~vV--~SPGI~~~ 83 (487) T PRK03369 14 PVLVAGAGVTGRAVLAALT-RFGARPT-VCDDDPDAL-----RPHAER-GVATVSSSDAVQQIADYALVV--TSPGFPPT 83 (487) T ss_pred EEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCHHH-----HHHHHC-CCCEECCCCCHHHHCCCCEEE--ECCCCCCC T ss_conf 8999915683899999999-7869799-998982577-----999865-994863762265646778899--89957998 Q ss_pred HHHHHHHHHCCCEE------------------------EEEECCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHH Q ss_conf 78887643237215------------------------76502223135899987403--5552100001156899999 Q gi|254780279|r 85 LQSLNISAQHNIVH------------------------IIGTTGFSVKENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 85 ~~~~~~a~~~g~~v------------------------ViGTTG~~~e~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 84 ~p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTtt-sli~~iL~~~g~~~~~~GN--iG~p~~~~ 159 (487) T PRK03369 84 APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTT-SMLHAMLRAAGRRSVLCGN--IGSPVLDV 159 (487) T ss_pred CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEEEC--CCHHHHHH T ss_conf 9999999988990765999999987444336766559997988727899-9999999858998599813--66576641 |
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.011 Score=38.54 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=57.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHHHHCCC---C-------CCC---CCCCC Q ss_conf 379998998779999999983899789999964898020---------4553666087---5-------467---54556 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVGNFVGI---S-------PMG---IKFSD 63 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~~~~~~---~-------~~~---v~i~~ 63 (280) T Consensus 1 M~iGmiGLGrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~ 78 (300) T COG1023 1 MQIGMIGLGRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID 78 (300) T ss_pred CCCEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHH T ss_conf 90115400052699999998-38972899-73888999999865775436799999746987479997337773689999 Q ss_pred CHHHHHCCCCEEEEEEC--CCHHHHHHHHHHHCCCEEEE-EECC Q ss_conf 85785213550476310--10247888764323721576-5022 Q gi|254780279|r 64 NLAMAIQSVDGIIDFSS--PALTLQSLNISAQHNIVHII-GTTG 104 (280) Q Consensus 64 dl~~~~~~~DViIDFT~--P~~~~~~~~~a~~~g~~vVi-GTTG 104 (280) T Consensus 79 ~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300) T COG1023 79 DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300) T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 98853678888987886325778999998876597178346777 |
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=38.63 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=50.3 Q ss_pred EEEEECCCHHHHHHHHHHHHC----CCCEE-EEEEEC-CCCHHHCCCHH--HHCC-------CCCCCCCCCCCH-----H Q ss_conf 799989987799999999838----99789-999964-89802045536--6608-------754675455685-----7 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNN----PSITL-HSIIVR-SGSPLIGQDVG--NFVG-------ISPMGIKFSDNL-----A 66 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~----~~~eL-v~~i~~-~~~~~~g~d~~--~~~~-------~~~~~v~i~~dl-----~ 66 (280) T Consensus 1 kvgINGFGRIGRlvlR~~~~~~~~g~~~~viv~inD~~~~~~~~ayLlkyDSvhG~~~y~~~~f~~~v~~~~~~~~~~~~ 80 (366) T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGSGLDLEVIVAINDLSTDLEKLAYLLKYDSVHGRLAYLYFRFEGEVTVDEDKAEKTNG 80 (366) T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHEECCCCCEEEEEECCCCCCCE T ss_conf 93651478589999999850578897058998314887688999988641235587110312788528883034367416 Q ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCH Q ss_conf 85213550476310102478887643237215765022231 Q gi|254780279|r 67 MAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSV 107 (280) Q Consensus 67 ~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280) T Consensus 81 l~v~g~~~~~~~-~~~~~P~~lpWt~~~~vD~V~EcTG~f~ 120 (366) T TIGR01534 81 LVVNGKVKVIVV-ASERDPSDLPWTKALGVDIVIECTGKFR 120 (366) T ss_pred EEECCCEEEEEE-EECCCHHHCCCHHHHCCEEEEECCCCCC T ss_conf 888680457887-4047853778712607328995887502 |
Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.043 Score=34.45 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=55.7 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCC---HHHHCCCCC-CCCCCCCCHHHHHCCCCEEE Q ss_conf 99887379998998779999999983899789999964898020455---366608754-67545568578521355047 Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQD---VGNFVGISP-MGIKFSDNLAMAIQSVDGII 76 (280) Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d---~~~~~~~~~-~~v~i~~dl~~~~~~~DViI 76 (280) T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~a-G~~V~li-~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~-~~~~D~vi 77 (313) T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLARA-GFDVHFL-LRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAED-MPPCDWVL 77 (313) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCCEEEE-ECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHH-CCCCCEEE T ss_conf 999988899999149999999999966-9956999-67559999868859996698289768402369778-39965899 Q ss_pred EEECCC---HHHHHHHHHHHCCCEEEEEECCCCH Q ss_conf 631010---2478887643237215765022231 Q gi|254780279|r 77 DFSSPA---LTLQSLNISAQHNIVHIIGTTGFSV 107 (280) Q Consensus 77 DFT~P~---~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280) T Consensus 78 v~vKs~~~~~~~~~l~~~~~~~t~il~lQNG~g~ 111 (313) T PRK06249 78 VGLKTTANALLAPLIPQVAAPGAKVLLLQNGLGV 111 (313) T ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH T ss_conf 9536677899999878644899589994476661 |
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=30.97 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=66.7 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC----------CHHHCCCHHHHCCCCCC-C-CCCCCCHHHHHCCCC Q ss_conf 37999899877999999998389978999996489----------80204553666087546-7-545568578521355 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG----------SPLIGQDVGNFVGISPM-G-IKFSDNLAMAIQSVD 73 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~----------~~~~g~d~~~~~~~~~~-~-v~i~~dl~~~~~~~D 73 (280) T Consensus 1 MkI~viGtGYVGLv~g-~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414) T COG1004 1 MKITVIGTGYVGLVTG-ACLAELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414) T ss_pred CCEEEECCCHHHHHHH-HHHHHCCCEEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCC T ss_conf 9158988855688789-9998709848999-5788999998679999767058999984623572798747888962597 Q ss_pred EEEEEE-CCCH---H--HHHHHH-------HHHCCCEEEEEEC---CCCHHHHHHHHHHHC--CCCCEECCCH Q ss_conf 047631-0102---4--788876-------4323721576502---223135899987403--5552100001 Q gi|254780279|r 74 GIIDFS-SPAL---T--LQSLNI-------SAQHNIVHIIGTT---GFSVKENEVISSFAR--NAPIVKSSNM 128 (280) Q Consensus 74 ViIDFT-~P~~---~--~~~~~~-------a~~~g~~vViGTT---G~~~e~~~~l~~~s~--~~~il~apN~ 128 (280) T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414) T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414) T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHH T ss_conf 7999748999988973289999999999862678739998488798846999999986346777507618678 |
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.071 Score=32.97 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=62.9 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCCHH Q ss_conf 79998998779999999983899789999964898020455366608754675455--6857852135504763101024 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 16 kv~i~GlG~sG~a~a~~L~~-~g~~v~-~~D~~~~~~~~~~~~~l---~~~gi~~~~g~~~~~~~~~~d~vv--~SPgI~ 88 (458) T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVT-AFDKKSEEELGEISLEL---KEKGVNLELGENYLDKLTGFDVIF--KTPSMR 88 (458) T ss_pred EEEEEEECHHHHHHHHHHHH-CCCEEE-EEECCCCHHHHHHHHHH---HHCCCEEEECCCHHHHCCCCCEEE--ECCCCC T ss_conf 69999787889999999997-889799-99898843148999999---857998995784054237888899--899879 Q ss_pred --HHHHHHHHHCCCEEE--------------EEECCCCHH--HHHHHHHHHC--CCCCEECCCHHHHHHHHHH Q ss_conf --788876432372157--------------650222313--5899987403--5552100001156899999 Q gi|254780279|r 85 --LQSLNISAQHNIVHI--------------IGTTGFSVK--ENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 85 --~~~~~~a~~~g~~vV--------------iGTTG~~~e--~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 89 ~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGN--iG~p~~~~ 159 (458) T PRK01710 89 IDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN 159 (458) T ss_pred CCCHHHHHHHHCCCCEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCHHHHH T ss_conf 989999999987993740999998637587799936898478999999999984997585166--26446888 |
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.15 Score=30.68 Aligned_cols=116 Identities=18% Similarity=0.100 Sum_probs=68.5 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHH---HHH--CCCCEEEEEE- Q ss_conf 79998998779999999983899789999964898020455366608754675455-6857---852--1355047631- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLA---MAI--QSVDGIIDFS- 79 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~---~~~--~~~DViIDFT- 79 (280) T Consensus 171 ~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl~~--A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350) T COG1063 171 TVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERLEL--AKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350) T ss_pred EEEEECCCHHHHHHHHH-HHHCCCCEEEEECCCHHHHHH--HHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 89998888999999999-987698279997999899999--998779718724630147889998608987999999989 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC Q ss_conf 0102478887643237215765022231358999874035552100 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS 125 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a 125 (280) T Consensus 248 ~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~g~ 293 (350) T COG1063 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGS 293 (350) T ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCEEEECC T ss_conf 9799999999602598999995158866656888997535089734 |
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.044 Score=34.41 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=62.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-C-CCHHHHHCCCCEEEEEECCCH Q ss_conf 37999899877999999998389978999996489802045536660875467545-5-685785213550476310102 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-S-DNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~-~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 8 k~vlV~GlG~sG~a~a~~L~~-~G~~V~~-~D~~~~~~---~~~~l~~~~-~~~~~~~g~~~~~~~~~~d~vV--~SPGI 79 (501) T PRK02006 8 PMVLVLGLGESGLAMARWCAR-HGCRLRV-ADTREAPP---NLAALQAEG-IDAEFVGGAFDPALLDGVELVA--LSPGL 79 (501) T ss_pred CEEEEEEECHHHHHHHHHHHH-CCCEEEE-EECCCCCC---CHHHHHHCC-CCCEEECCCCCHHHHCCCCEEE--ECCEE T ss_conf 839998336889999999997-8984999-98999986---199998608-9818977889867846899999--89900 Q ss_pred ------HHHHHHHHHHCCCEE-----------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHH Q ss_conf ------478887643237215-----------------------76502223135--8999874035--55210000115 Q gi|254780279|r 84 ------TLQSLNISAQHNIVH-----------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSL 130 (280) Q Consensus 84 ------~~~~~~~a~~~g~~v-----------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~Si 130 (280) T Consensus 80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GNI-- 157 (501) T PRK02006 80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGNI-- 157 (501) T ss_pred CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC-- T ss_conf 888854319999999879958768999998876302223568748999389966879999999999769974652564-- Q ss_pred HHHHHHHH Q ss_conf 68999999 Q gi|254780279|r 131 GINFLGFL 138 (280) Q Consensus 131 Gv~ll~~l 138 (280) T Consensus 158 G~p~l~~l 165 (501) T PRK02006 158 SPAALDKL 165 (501) T ss_pred CCHHHHHH T ss_conf 61026778 |
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.1 Score=31.92 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=65.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCC--CCCCCCHHHHHCCCCEEEEE-ECCC Q ss_conf 99989987799999999838997899999648980204--5536660875467--54556857852135504763-1010 Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMG--IKFSDNLAMAIQSVDGIIDF-SSPA 82 (280) Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~--v~i~~dl~~~~~~~DViIDF-T~P~ 82 (280) T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el-~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~-~~~daDvvVitaG~~~ 78 (300) T cd01339 1 ISIIGAGNVGATLAQLLALKELGDV-VLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPR 78 (300) T ss_pred CEEECCCHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHH-HHCCCCEEEEECCCCC T ss_conf 9898968889999999985799679-9980999800579887761320158985899478879-9479989999067789 Q ss_pred -HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf -2478887643237215765022231358999874035552100001156899999999999 Q gi|254780279|r 83 -LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280) Q Consensus 83 -~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280) T Consensus 79 k~g~tR~dLl-~~N~~I-------~~~i~~~i~~~~p~~i~lvvsNP---vDv~t~~~~k~s 129 (300) T cd01339 79 KPGMSRDDLL-GTNAKI-------VKEVAENIKKYAPNAIVIVVTNP---LDVMTYVAYKAS 129 (300) T ss_pred CCCCCHHHHH-HHHHHH-------HHHHHHHHHHHCCCCEEEECCCC---HHHHHHHHHHHH T ss_conf 9899889999-988999-------99999999965998489982793---899999999972 |
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.053 Score=33.84 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=71.7 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 87379998998779999999983899789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 9 a~~~v~~igtGrl~ra~~~ra-~h~~~~cs~i~srS~--~~a~~LaE~~~a~p~d~~~~ae------l~~~vf-v~vpd~ 78 (289) T COG5495 9 ARVVVGIVGTGRLGRAALLRA-DHVVVACSAISSRSR--DRAQNLAETYVAPPLDVAKSAE------LLLLVF-VDVPDA 78 (289) T ss_pred CEEEEEEEECCHHHHHHHHHH-HHHHEEEHHHHHCCH--HHHHHHHHHCCCCCCCHHHCHH------HHCEEE-ECCCHH T ss_conf 015888760442789999874-003212113432178--9986204421799510120734------515478-626088 Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHH Q ss_conf 4-78887643237215765022231358999874035--552100001156 Q gi|254780279|r 84 T-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN--APIVKSSNMSLG 131 (280) Q Consensus 84 ~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiG 131 (280) T Consensus 79 ~~~~vaa~~~~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fs 127 (289) T COG5495 79 LYSGVAATSLNRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFS 127 (289) T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHCCCCCCEECCCHHCC T ss_conf 88888876046898389974688740--45425421587530005211036 |
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=31.77 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=57.4 Q ss_pred CCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE Q ss_conf 998-8737999899877999999998389978999996489802045536660875467545568578521355047631 Q gi|254780279|r 1 MHQ-SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280) Q Consensus 1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280) T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~----~~~~~~~~~-~~~~~~~~--~~~~~~d~iV--~ 69 (450) T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR----DIFEELFSK-NAIIALSD--SRWQNLDKIV--L 69 (450) T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH----HHHHHHHCC-CCEECCCC--CCHHCCCEEE--E T ss_conf 9766899089995878799999999719--9989998996564----789975214-83602571--1152199999--8 Q ss_pred CCCHH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHHHHHH Q ss_conf 01024--78887643237215---------------7650222313--58999874035--55210000115689999 Q gi|254780279|r 80 SPALT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGINFLG 136 (280) Q Consensus 80 ~P~~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280) T Consensus 70 SPGI~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN--IG~p~l~ 145 (450) T PRK01368 70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN--IGVPALQ 145 (450) T ss_pred CCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCHHHHH T ss_conf 996199899999999879958769999997667997799968999748999999999975996289625--5636652 |
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=31.10 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=51.6 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC-H Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631010-2 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA-L 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~-~ 83 (280) T Consensus 1 m~~~~i~GtGniG~alA~~~a~-ag~eV~igs~r~~~~~~a--~a~~l~--~~--i~~~~~~dA~~~aDVVv-LAVP~~a 72 (211) T COG2085 1 MMIIAIIGTGNIGSALALRLAK-AGHEVIIGSSRGPKALAA--AAAALG--PL--ITGGSNEDAAALADVVV-LAVPFEA 72 (211) T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHH--HHHHHC--CC--CCCCCHHHHHHCCCEEE-EECCHHH T ss_conf 9179996257187899999996-797399964788067889--998645--65--33477688884399899-9545787 Q ss_pred HHHHHHHHHH-C-CCEEEEEECC Q ss_conf 4788876432-3-7215765022 Q gi|254780279|r 84 TLQSLNISAQ-H-NIVHIIGTTG 104 (280) Q Consensus 84 ~~~~~~~a~~-~-g~~vViGTTG 104 (280) T Consensus 73 ~~~v~~~l~~~~~~KIvID~tnp 95 (211) T COG2085 73 IPDVLAELRDALGGKIVIDATNP 95 (211) T ss_pred HHHHHHHHHHHHCCEEEEECCCC T ss_conf 77699999987099099966887 |
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.063 Score=33.34 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=52.5 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEE---- Q ss_conf 37999899-877999999998389978999996489802045536660875467545568578521--35504763---- Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDF---- 78 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDF---- 78 (280) T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~-~~~----------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt 61 (281) T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATD-RAE----------------LDITDPDAVLEVIRETRPDVVINAAAYT 61 (281) T ss_pred CCEEEECCCCHHHHHHHHHHC--CCCEEEECC-CCC----------------CCCCCHHHHHHHHHHHCCCEEEECCCCC T ss_conf 958997698767999999717--784399515-765----------------5556858999999861999899873203 Q ss_pred ------ECCC--------HHHHHHHHHHHCCCEEEEEECCC Q ss_conf ------1010--------24788876432372157650222 Q gi|254780279|r 79 ------SSPA--------LTLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 79 ------T~P~--------~~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 62 ~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281) T COG1091 62 AVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCE T ss_conf 65413389899777677999999999997197699963445 |
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.037 Score=34.91 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=63.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 3799989987799999999838997899999648980204553666087-546754556857852135504763101024 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 119 ~~l~iiG~G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~--~f~~~~~~~~~~~v~~~~~~e~av~~aDiI~taT~-s~~ 195 (302) T PRK06407 119 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHAR--AFAERFSKEFGVDIRPVDNAEAALRDADTITSITN-SDT 195 (302) T ss_pred CEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH--HHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECC-CCC T ss_conf 789999665999999999997407738999808889999--99999864409957994899999834999999418-988 Q ss_pred HHHHHHHHHCCCEEEE-EEC Q ss_conf 7888764323721576-502 Q gi|254780279|r 85 LQSLNISAQHNIVHII-GTT 103 (280) Q Consensus 85 ~~~~~~a~~~g~~vVi-GTT 103 (280) T Consensus 196 Pv~~~~~l~~g~hi~aiGa~ 215 (302) T PRK06407 196 PIFNRKYLGDEYHVNLAGSN 215 (302) T ss_pred CCCCHHHCCCCCEEEEECCC T ss_conf 67158887999489963799 |
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.097 Score=32.06 Aligned_cols=118 Identities=16% Similarity=0.294 Sum_probs=58.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCCH Q ss_conf 7999899877999999998389-978999996489802045536660875467545--5685785213550476310102 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 9 kvlV~GlG~sG~s~a~~L~~~~~~~~v-~~~D~~~~~~~~~~l~-------~~~~~~~g~~~~~~l~~~d~vV--~SPGI 78 (438) T PRK04663 9 NVVVVGLGITGLSVVKHLRKTQPQLTV-KVIDTRETPPGQEQLP-------EDVELHSGGWNQDWLAEADLVV--TNPGI 78 (438) T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEE-EEECCCCCHHHHHHHH-------CCCEEEECCCCHHHHCCCCEEE--ECCCC T ss_conf 499990678589999999966998469-9963988936887620-------6976972788967836899999--89976 Q ss_pred H--HHHHHHHHHCCCEE--------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHHHHHHHH Q ss_conf 4--78887643237215--------------76502223135--8999874035--55210000115689999 Q gi|254780279|r 84 T--LQSLNISAQHNIVH--------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSLGINFLG 136 (280) Q Consensus 84 ~--~~~~~~a~~~g~~v--------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280) T Consensus 79 ~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNi--G~p~~~ 149 (438) T PRK04663 79 ALATPEIQPVLAKGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALD 149 (438) T ss_pred CCCCHHHHHHHHCCCCEECHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEC--CCHHHH T ss_conf 99898999999869937038899976458978999489982899999999998289970687215--716887 |
|
| >pfam10727 Rossmann-like Rossmann-like domain | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.077 Score=32.74 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=59.4 Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-HH Q ss_conf 99899877999999998389978999996489802045536660875467545568578521355047631010247-88 Q gi|254780279|r 9 SVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL-QS 87 (280) Q Consensus 9 ~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~-~~ 87 (280) T Consensus 1 GiIGaGrvG~~L~~al~-~aGh~v~gv~srs~~s~--~~a~~~~-----~~~~~-~~~ev~~~adlv~-itvPDd~I~~v 70 (111) T pfam10727 1 GIISAGRVGVALGEALE-RAGHVVHAISAISDASR--ERAERRL-----DSPVL-PIPDVIRRAELVV-LAVPDAELPGL 70 (111) T ss_pred CCCCCCHHHHHHHHHHH-HCCCEEEEEEECCHHHH--HHHHHHC-----CCCCC-CHHHHHHHCCEEE-EECCHHHHHHH T ss_conf 94376577999999999-78982899983898899--9999866-----99767-9589897679999-98978889999 Q ss_pred HHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCC Q ss_conf 8764---3237215765022231358999874035 Q gi|254780279|r 88 LNIS---AQHNIVHIIGTTGFSVKENEVISSFARN 119 (280) Q Consensus 88 ~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~ 119 (280) T Consensus 71 v~~la~~~~~Gq-iV~HtSGa~g--~~vL~pa~~~ 102 (111) T pfam10727 71 VEGLAATVRRGQ-IVAHTSGAHG--IGILAPLETS 102 (111) T ss_pred HHHHHHHCCCCC-EEEECCCCCH--HHHHCHHHHC T ss_conf 999983267997-9998668750--7761449878 |
This family of proteins contain a Rossmann-like domain. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.22 Score=29.64 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=55.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--H---CCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC Q ss_conf 37999899877999999998389978999996489802--0---455366608754675455685785213550476310 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--I---GQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS 80 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~---g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280) T Consensus 1 MkI~IiGaGaiG~~~a~~L~~-ag~~V~-li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK 77 (307) T PRK06522 1 MKIAILGAGAIGGLFGARLAQ-AGHDVT-LVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAE-LGPQDLVILAVK 77 (307) T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHH-CCCCCEEEEECC T ss_conf 989999914999999999984-899889-99788889999996893995289769805503488667-489888999806 Q ss_pred CCHHHHH---HHHHHHCCCEEEEEECCCCHH Q ss_conf 1024788---876432372157650222313 Q gi|254780279|r 81 PALTLQS---LNISAQHNIVHIIGTTGFSVK 108 (280) Q Consensus 81 P~~~~~~---~~~a~~~g~~vViGTTG~~~e 108 (280) T Consensus 78 s~~~~~a~~~l~~~l~~~t~iv~lqNG~g~~ 108 (307) T PRK06522 78 AYQLPAALPDLAPLLGPETVVLFLQNGVGHE 108 (307) T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCHH T ss_conf 6689999999986459994899961686779 |
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.12 Score=31.32 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=53.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHH----CCCCCCCCCCCCCHHHHHCCCCEEEEEECC Q ss_conf 3799989987799999999838997899999648980204553666----087546754556857852135504763101 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNF----VGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~----~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280) T Consensus 1 MkI~I~GaGAiG~~~a~~L~~-~g~~V~lv-~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~Ks 78 (306) T PRK12921 1 MKIAVVGAGAVGGTFGARLLE-AGRDVTFL-GRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAVKA 78 (306) T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEEEE-EECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEECC T ss_conf 989999924999999999983-69988999-7000999999789699977976998061050805656897689997045 Q ss_pred CHHHHH---HHHHHHCCCEEEEEECCCCHH Q ss_conf 024788---876432372157650222313 Q gi|254780279|r 82 ALTLQS---LNISAQHNIVHIIGTTGFSVK 108 (280) Q Consensus 82 ~~~~~~---~~~a~~~g~~vViGTTG~~~e 108 (280) T Consensus 79 ~~~~~a~~~l~~~~~~~t~il~lQNG~g~~ 108 (306) T PRK12921 79 YQLDAAIPDLKPLVGEDTVIIPLQNGIGHL 108 (306) T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHH T ss_conf 677999999986339994899934877538 |
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.11 Score=31.61 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=62.1 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCC Q ss_conf 737999899877999999998389978999996489802045536660875467545--568578521355047631010 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPA 82 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~ 82 (280) T Consensus 14 gk~v~V~GlG~sG~s~a~~L~~-~G~~v~~~D~~~~~~-~~-~--~~~~l~~~g~~~~~g~~~~~~~~~~d~vV--~SPG 86 (481) T PRK01438 14 GLRVVVAGLGVSGFPAADALHE-LGASVTVVADGDDDR-SR-E--RAALLEVLGATVRLGDGETTLPEGTELVV--TSPG 86 (481) T ss_pred CCEEEEEEECHHHHHHHHHHHH-CCCEEEEEECCCCCC-CH-H--HHHHHHHCCCEEEECCCHHHHHCCCCEEE--ECCC T ss_conf 9989999575889999999996-799899997998744-86-8--99988854988996887566624899999--8997 Q ss_pred HH--HHHHHHHHHCCCEE----------------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH Q ss_conf 24--78887643237215----------------------765022231358999874035--55210000115689999 Q gi|254780279|r 83 LT--LQSLNISAQHNIVH----------------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG 136 (280) Q Consensus 83 ~~--~~~~~~a~~~g~~v----------------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280) T Consensus 87 I~~~~p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTT-tsli~~iL~~~g~~~~~~GN--IG~p~l~ 163 (481) T PRK01438 87 WRPTHPLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTT-VQMLASILRAAGLRAAAVGN--IGVPVLD 163 (481) T ss_pred CCCCCHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHCCCCEEEEEE--CCHHHHH T ss_conf 89989999999986993861899999875213688878999389974609-99999999966997079962--5677776 |
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.03 Score=35.58 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=52.0 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC------CCCEEEEEE- Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521------355047631- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ------SVDGIIDFS- 79 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~------~~DViIDFT- 79 (280) T Consensus 166 ~VlV~GaG~vGl~~~~~a-k~~Ga~~Vi~~d~~~~kl---~~a~~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvid~~G 241 (341) T PRK05396 166 DVLITGAGPIGIMAAAVA-KHVGARHVVITDVNEYRL---ELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341) T ss_pred EEEEECCCCCCHHHHHHH-HHCCCEEEEEEECCHHHH---HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 699989975432999999-984992899994899999---9898649949996885068999999748999769998789 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf 0102478887643237215765022 Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 242 ~~~~~~~~~~~l~~gG~vv~~G~~~ 266 (341) T PRK05396 242 APSAFRQMLDAMNHGGRIAMLGIPP 266 (341) T ss_pred CHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 8999999999863598999995579 |
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.11 Score=31.74 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=48.6 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEE---E Q ss_conf 37999899-877999999998389978999996489802045536660875467545568578521--35504763---1 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDF---S 79 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDF---T 79 (280) T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~~~~~~---~~~~~~~~-~D-----------it~~~~v~~~~~~~~Pd~IIN~aA~T 65 (299) T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGNLIAL---DVHSTDYC-GD-----------FSNPEGVAETVRKIRPDVIVNAAAHT 65 (299) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE---ECCCCCCC-CC-----------CCCHHHHHHHHHHCCCCEEEECHHHC T ss_conf 97999899997899999986650988998---52630013-67-----------89999999999965999999883101 Q ss_pred CCC---------------HHHHHHHHHHHCCCEEEEEEC Q ss_conf 010---------------247888764323721576502 Q gi|254780279|r 80 SPA---------------LTLQSLNISAQHNIVHIIGTT 103 (280) Q Consensus 80 ~P~---------------~~~~~~~~a~~~g~~vViGTT 103 (280) T Consensus 66 ~VD~~E~~~~~a~~vN~~~~~~La~~~~~~~~~lIhiST 104 (299) T PRK09987 66 AVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299) T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 636652489999998889999999999973985999632 |
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.19 Score=30.10 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=57.3 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH---HCCCCEEEEEECC Q ss_conf 37999899-8779999999983899789999964898020455366608754675455685785---2135504763101 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA---IQSVDGIIDFSSP 81 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~---~~~~DViIDFT~P 81 (280) T Consensus 164 ~~VlI~Ga~G~vG~~aiqla-k~~Ga~vi~v~~-~~~k~---~~~~~~~~---~~i~~~~~~~~~~~~~g~Dvvid~~G~ 235 (332) T PRK13771 164 ETVLVTGAGGGVGIHAVQVA-KAYGAKVIAVTT-SESKA---KAVGKYAD---YVIVGSKFSEEVKKLGGADIVIETVGG 235 (332) T ss_pred CEEEEECCCCHHHHHHHHHH-HHCCCEEEEEEC-CHHHH---HHHHHCCC---EEEECCCHHHHHHHCCCCCEEEECCCH T ss_conf 99999778775899999999-986998999949-99999---99985699---898363057888734686389845766 Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE Q ss_conf 0247888764323721576502223135899987403555210 Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVK 124 (280) Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~ 124 (280) T Consensus 236 ~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~k~~~i~g 278 (332) T PRK13771 236 PTLEESLRSLNWGGKIVLIGNVDPSPASLRLGLLILKDIEILG 278 (332) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEE T ss_conf 8899888862589699999345787576458999866878999 |
|
| >KOG1198 consensus | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.13 Score=31.08 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=55.2 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHC-----CCCEEEE Q ss_conf 737999899-8779999999983899789999964898020455366608754675455-68578521-----3550476 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQ-----SVDGIID 77 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~-----~~DViID 77 (280) T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA----d~v-vdy~~~~~~e~~kk~~~~~~DvVlD 231 (347) T KOG1198 158 GKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA----DEV-VDYKDENVVELIKKYTGKGVDVVLD 231 (347) T ss_pred CCEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCC----CCC-CCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 9869999387489999999998749-747999815541689997299----651-2488577999987622788509998 Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf 310102478887643237215765022 Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347) T KOG1198 232 CVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347) T ss_pred CCCCCCCHHHHHHHCCCCCCEEEEECC T ss_conf 888973243234332378726999437 |
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.069 Score=33.05 Aligned_cols=98 Identities=16% Similarity=0.330 Sum_probs=62.3 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC-----CCCCCCC-HHHHHCCCCEEEE Q ss_conf 737999899-87799999999838997899999648980204553666087546-----7545568-5785213550476 Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM-----GIKFSDN-LAMAIQSVDGIID 77 (280) Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-----~v~i~~d-l~~~~~~~DViID 77 (280) T Consensus 315 ~~~vlilgvngfig~hl~~~~l~~~~~~v~g~-d~~~~~-----i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlp 388 (660) T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGL-DIGSDA-----ISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660) T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE-ECCCCH-----HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEE T ss_conf 22799983441367899999850388589988-657534-----557534995488815614668999988754576732 Q ss_pred E---------E-CCC--------HHHHHHHHHHHCCCEEEEEEC----CCCHH Q ss_conf 3---------1-010--------247888764323721576502----22313 Q gi|254780279|r 78 F---------S-SPA--------LTLQSLNISAQHNIVHIIGTT----GFSVK 108 (280) Q Consensus 78 F---------T-~P~--------~~~~~~~~a~~~g~~vViGTT----G~~~e 108 (280) T Consensus 389 lvaiatp~~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d 441 (660) T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTD 441 (660) T ss_pred EHHHCCHHHHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCC T ss_conf 05534747763486047873267552899999974877896560551014788 |
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.36 Score=28.12 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=62.6 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-CCCH--HHHH-----CCCC-EEEE Q ss_conf 7999899877999999998389978999996489802045536660875467545-5685--7852-----1355-0476 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-SDNL--AMAI-----QSVD-GIID 77 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~~dl--~~~~-----~~~D-ViID 77 (280) T Consensus 419 hvii~G~Gr~G~~va~~L~~-~~~~~v-vid~d~~~v--------~~~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit 488 (558) T PRK10669 419 HALLVGYGRVGSLLGEKLLA-SGIPLV-VIETSRTRV--------DELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558) T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHH--------HHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEE T ss_conf 98998988669999999998-799889-998989999--------99996899799978998899985791324999998 Q ss_pred EECCCHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH Q ss_conf 3101024788876432372--15765022231358999874035552100001156 Q gi|254780279|r 78 FSSPALTLQSLNISAQHNI--VHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280) Q Consensus 78 FT~P~~~~~~~~~a~~~g~--~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280) T Consensus 489 ~~d~~~~~~iv~~~r~~~p~~~Ii--aRa~~~~~~~~L~~aG--A~~VV~~~~e~a 540 (558) T PRK10669 489 IPNGYEAGEIVASAREKNPDIEII--ARAHYDDEVAYITERG--ANQVVMGEREIA 540 (558) T ss_pred ECCHHHHHHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHCC--CCEEECCHHHHH T ss_conf 198899999999999878698699--9979899999999779--998989378999 |
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.41 Score=27.80 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=74.8 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763101024 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280) T Consensus 1 m~Ki~~~~~~~~e~~~~~~~~~~~~~ev~~~~~----------------------~~~ee~i~~~~~~D~i~v~~~~~i~ 58 (332) T PRK08605 1 MTKIKLMSVRDEDAPYIKAWAEKHHVEVDLTKE----------------------ALTDDNVEEVEGFDGLSLSQQIPLS 58 (332) T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC----------------------CCCHHHHHHHCCCCEEEEECCCCCC T ss_conf 976999827665699999988865907999669----------------------9998999985799889997079779 Q ss_pred HHHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 7888764323721576-502223135899987403555210000115 Q gi|254780279|r 85 LQSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 85 ~~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 59 ~~vl~~~~~l~iK~I~r~gvG~DnIDl~~a~~--~gI~V~n~P~~~~ 103 (332) T PRK08605 59 EAIYKLLNELGIKQIAQRSAGFDTYDLELANK--YNIIISNVPSYSP 103 (332) T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH--CCCEEEECCCCCH T ss_conf 99999666369779997772174546999997--9998995998684 |
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=30.64 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=52.4 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 1 mKi~V~GlG~sG~s~a~~L~~~g~~--~i~dD~~~~~~~~-~~~~---------~~~~~~~~~~~~~d~vv--~SPGI~~ 66 (401) T PRK03815 1 MKISLFGYGKTTKALARFFVKNGGV--DIYDDKFTEPKKD-EEGN---------LLLPSNDFDPNKSDLEI--PSPGIPP 66 (401) T ss_pred CEEEEEEECHHHHHHHHHHHHCCCE--EEEECCCCCCCHH-HHHC---------CCCCHHHCCCHHCCEEE--ECCCCCC T ss_conf 9399984777189999999948797--9998999862224-6404---------00684335801286899--8998599 Q ss_pred --HH----------HHHHHHCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH Q ss_conf --88----------87643237--215765022231358999874035552100001156 Q gi|254780279|r 86 --QS----------LNISAQHN--IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280) Q Consensus 86 --~~----------~~~a~~~g--~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280) T Consensus 67 ~~p~~~~a~~i~seiel~~~~~~~~I~ITGTNGKsTt-t~li~~iL~~~g~~~~GNIG~P 125 (401) T PRK03815 67 SHPLIQKAKNLISEYDYFYSFMPFSIWISGTNGKTTT-TQMLTHLLEDFGAVSGGNIGTP 125 (401) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH-HHHHHHHHHHCCCCEECCCCHH T ss_conf 8799998745414999998527874899847777899-9999999986698130416643 |
|
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.23 Score=29.53 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=50.8 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHH----C--CCCEEE Q ss_conf 37999899-877999999998389978999996489802045536660875467545--56857852----1--355047 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAI----Q--SVDGII 76 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~----~--~~DViI 76 (280) T Consensus 106 ~~VlI~gg~G~vG~~aiqla-k~~Ga~Vi~t~~s~~k~----~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gvDvv~ 180 (288) T smart00829 106 ESVLIHAAAGGVGQAAIQLA-QHLGAEVFATAGSPEKR----DFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVL 180 (288) T ss_pred CEEEEECCCCHHHHHHHHHH-HHCCCCEEEEECCHHHH----HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEE T ss_conf 99999789867779999999-97398300340888999----99997699960762179950999999870898827999 Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEECCCCHH Q ss_conf 63101024788876432372157650222313 Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTTGFSVK 108 (280) Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e 108 (280) T Consensus 181 d~vgg~~~~~~~~~l~~~G~~v~ig~~~~~~~ 212 (288) T smart00829 181 NSLAGEFLDASLRCLAPGGRFVEIGKRDIRDN 212 (288) T ss_pred ECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 89868999999997536988999756666675 |
Enoylreductase in Polyketide synthases. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.24 Score=29.41 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=75.4 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH-HHHHCCCCEEEEEEC Q ss_conf 8873799989987799999999838-99789999964898020455366608754675455685-785213550476310 Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL-AMAIQSVDGIIDFSS 80 (280) Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl-~~~~~~~DViIDFT~ 80 (280) T Consensus 22 s~klkvLVVGGG~VA~RKi~~Ll~agA~VtVV---SP~----~~~el~~L~~~~~I~-~i~r~y~~~dL~~~~LVIaATd 93 (222) T PRK05562 22 SNKIKVLVIGGGKAAFIKGKTFLKKGCYVEIL---SKE----FSKEFLDLKKYGNLK-LIKGNYDKEFIKDKHLIIIATD 93 (222) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---CCC----CCHHHHHHHHCCCEE-EEECCCCHHHCCCCCEEEEECC T ss_conf 26766999998799999999998789989998---786----688999999759869-9968679778088739999479 Q ss_pred -CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH-HHHHHHCCCCCCH Q ss_conf -102478887643237215765022231358999874035552100001156899999999-9998611566600 Q gi|254780279|r 81 -PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE-TAAEYLLPAKDWD 153 (280) Q Consensus 81 -P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~-~~a~~l~~~~~~d 153 (280) T Consensus 94 d~~lN~~I~~~a~~~~ilvNvvdd-p~~~~-fi~Paiv~Rg~L~IAIST~G~SP~lAr~iR~klE~~~---pey~ 163 (222) T PRK05562 94 DEELNNKIRKHCDRLYKLYIDCSD-FKKGL-CVIPYQRSSKNMVFALNTKGGSPKTSVFIGEKVKNFL---KKYD 163 (222) T ss_pred CHHHHHHHHHHHHHHCCEEEECCC-CCCCC-EEECEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHH---HHHH T ss_conf 889999999999980998898578-87681-7977099728979999899989799999999999987---8899 |
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.098 Score=32.03 Aligned_cols=95 Identities=9% Similarity=0.159 Sum_probs=48.6 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHH Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310102478 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTLQ 86 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~~ 86 (280) T Consensus 4 Kvlvt~--~i~~~~~~~L~~~--~~v~~~~~~~--~-----------------~~~~~l~~~i~~~d~li~~~~~~i~~~ 60 (333) T PRK13243 4 RVFITR--EIPENGIEMLEEH--FEVEVWEDER--E-----------------IPREVLLEKVKDVDALVTMLSERIDAE 60 (333) T ss_pred EEEEEC--CCCHHHHHHHHHC--CCEEEECCCC--C-----------------CCHHHHHHHHCCCCEEEECCCCCCCHH T ss_conf 899969--8899999999717--9599926999--9-----------------999999998679829998588858899 Q ss_pred HHHHHHHCCCEEE-EEECCCCHHHHHHHHHHHCCCCCEECCCH Q ss_conf 8876432372157-65022231358999874035552100001 Q gi|254780279|r 87 SLNISAQHNIVHI-IGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 87 ~~~~a~~~g~~vV-iGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 61 ~l~~ap~--LK~I~~~gvG~D~ID~~~a~~--~gI~V~ntpg~ 99 (333) T PRK13243 61 VFEAAPR--LRIVANYAVGYDNIDVEEATK--RGIYVTNTPGV 99 (333) T ss_pred HHHCCCC--CEEEEECCCCCCCCCHHHHHH--CCCEEEECCCC T ss_conf 9946999--809988574643305999996--99789968996 |
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=30.13 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=64.9 Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEE--EECCCCHHHCCCHHHHCCCCCCCCCCC-CCHH-HHHCCCCEE Q ss_conf 9988737999899-8779999999983899789999--964898020455366608754675455-6857-852135504 Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSI--IVRSGSPLIGQDVGNFVGISPMGIKFS-DNLA-MAIQSVDGI 75 (280) Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~--i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~-~~~~~~DVi 75 (280) T Consensus 1 M~-~~~niAI-GATGaVG~~~l~iLee-r~fPv~~L~llas~~-~s~~~~i------~f~g~~v~~~~~~~f~~~~vdi~ 70 (323) T PRK06901 1 MD-ATLNIAI-AAEFELSEKIVEALEE-SDLEISSISIVEIEP-FGEEQGI------RFNNKAVEQIAPDEVEWADFNYV 70 (323) T ss_pred CC-CCCCEEE-ECCCHHHHHHHHHHHH-CCCCCCEEEEEEECC-CCCCCEE------EECCEEEEEECHHHCCCCCCCEE T ss_conf 99-7641899-7666899999999997-599946087776326-6788579------98998999951213563248899 Q ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCCCEECCCHHHH Q ss_conf 7631010247888764323721576502223135----------8999874035552100001156 Q gi|254780279|r 76 IDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAPIVKSSNMSLG 131 (280) Q Consensus 76 IDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~il~apN~SiG 131 (280) T Consensus 71 f-fAg~~~s~~~~p~A~~aG~vVIDnSSafRmd~dvPLVVPEVN~~~l~~~-~~~~IIANPNCsTi 134 (323) T PRK06901 71 F-FAGKLEQVEHLAQAAEAGCIVIDMLGICAALANVPVVVPSVNDEQLAEL-RQRNIVSLPDPQVS 134 (323) T ss_pred E-ECCCHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCEECCCCCHHHHHCC-HHCCEEECCCHHHH T ss_conf 9-8582899999999998898999897565178998648067499998513-11798889982899 |
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.15 Score=30.72 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=55.5 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH- Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280) T Consensus 11 ~v~v~GlG~sG~s~a~~L~-~~G~~V~-~~D~~~~~~---~~~-----~~~g~~~~~~~~~~~~~~~~iV--~SPGIp~~ 78 (457) T PRK01390 11 TVALFGLGGSGLATARALK-AGGAEVI-AWDDNPDSV---AKA-----AAAGIATADLRTADWSQFAALV--LSPGVPLT 78 (457) T ss_pred EEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCHHH---HHH-----HHCCCCCCCCCCCCCCCCCEEE--ECCCCCCC T ss_conf 8999943699999999999-7899799-993992066---899-----8759831455412320387899--99988865 Q ss_pred -----HHHHHHHHCCCEE-------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHHHHHHH Q ss_conf -----8887643237215-------------------76502223135--8999874035--5521000011568999 Q gi|254780279|r 86 -----QSLNISAQHNIVH-------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSLGINFL 135 (280) Q Consensus 86 -----~~~~~a~~~g~~v-------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~SiGv~ll 135 (280) T Consensus 79 ~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN--IG~p~l 154 (457) T PRK01390 79 HPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN--IGTAIL 154 (457) T ss_pred CCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHC T ss_conf 6673199999998599186008999999873257898899928996498999999999973998699666--240111 |
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.32 Score=28.49 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=51.0 Q ss_pred EE-EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH---CCCCEE---EEE Q ss_conf 37-99989987799999999838997899999648980204553666087546754556857852---135504---763 Q gi|254780279|r 6 MR-ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI---QSVDGI---IDF 78 (280) Q Consensus 6 Ik-V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~---~~~DVi---IDF 78 (280) T Consensus 1 MktlglIGLGrMG~ni~~rl~-~rgh~~vg-Yd~~q~av------~~~kG~d~~~gv~-nl~E~~~~l~~Pr~vWvMVPh 71 (341) T TIGR00872 1 MKTLGLIGLGRMGANIAKRLA-DRGHEVVG-YDRDQAAV------EELKGEDRAEGVA-NLKELLKRLSAPRVVWVMVPH 71 (341) T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCHHHH------HHHHCCCCCCCCH-HHHHHHHCCCCCCEEEEECCC T ss_conf 952443133467899999985-27946998-53887999------9972011343001-247888417999589986287 Q ss_pred E-CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH Q ss_conf 1-0102478887643237215765022231358999874 Q gi|254780279|r 79 S-SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSF 116 (280) Q Consensus 79 T-~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~ 116 (280) T Consensus 72 gnivdaVl~~l~p~L~kGD~vIdgGNsyYkds~Rry~~l 110 (341) T TIGR00872 72 GNIVDAVLRELAPLLEKGDIVIDGGNSYYKDSLRRYKEL 110 (341) T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH T ss_conf 367999999766676408889827865123347888768 |
Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. . |
| >pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.14 Score=31.05 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=55.1 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 37 k~vgIiG~G~IG~~va~~l~-~fg~~V~~-~d~~~~~~-----~-----~~~~~-~~~~l~~ll~~sDii~~-~~plt~- 101 (176) T pfam02826 37 KTVGIIGLGRIGRAVARRLK-AFGMKVIA-YDRYPKAE-----A-----EALGA-RYVSLDELLAESDVVSL-HLPLTP- 101 (176) T ss_pred CEEEEECCCHHHHHHHHHHH-HHCCCEEE-ECCCCCCH-----H-----HHCCE-EECCHHHHHHHCCEEEE-CCCCCC- T ss_conf 99999896999999999999-83981254-37987610-----2-----31571-66689999862998875-476742- Q ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH Q ss_conf 88876432372157650222-313589998740355521000011568999999 Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGF-SVKENEVISSFARNAPIVKSSNMSLGINFLGFL 138 (280) Q Consensus 86 ~~~~~a~~~g~~vViGTTG~-~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l 138 (280) T Consensus 102 ---------------~T~~li~~~~l~~mk~----~a~l--IN~sRG~ivde~a 134 (176) T pfam02826 102 ---------------ETRHLINAERLALMKP----GAIL--INTARGGLVDEDA 134 (176) T ss_pred ---------------CCCCCCCHHHHHHHCC----CCEE--EEECCCCCCCHHH T ss_conf ---------------0246346999985189----9889--9806755128999 |
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.18 Score=30.18 Aligned_cols=100 Identities=24% Similarity=0.268 Sum_probs=50.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH----HCCCHHHHCC----CCCCCCCCCCCHHHHHCCCCEEE Q ss_conf 737999899877999999998389978999996489802----0455366608----75467545568578521355047 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL----IGQDVGNFVG----ISPMGIKFSDNLAMAIQSVDGII 76 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~----~g~d~~~~~~----~~~~~v~i~~dl~~~~~~~DViI 76 (280) T Consensus 2 mmkI~IiGaGAvG~~~a~~L~~-aG~~V~lv-~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi 78 (341) T PRK08229 2 MARICVLGAGSIGCYLGGRLAA-AGADVTLI-GRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPA-ALATADLVL 78 (341) T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCCEEEE-ECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHH-HCCCCCEEE T ss_conf 4779998967999999999985-89987999-56789999996790996389976896366156148865-658999899 Q ss_pred EEECCCHHHHHHHHH---HHCCCEEEEEECCCCH Q ss_conf 631010247888764---3237215765022231 Q gi|254780279|r 77 DFSSPALTLQSLNIS---AQHNIVHIIGTTGFSV 107 (280) Q Consensus 77 DFT~P~~~~~~~~~a---~~~g~~vViGTTG~~~ 107 (280) T Consensus 79 v~vKa~~~~~a~~~l~~~l~~~t~il~lQNGlg~ 112 (341) T PRK08229 79 VTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341) T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 9707578899999998643899689995047771 |
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.2 Score=29.85 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=56.9 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH- Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280) T Consensus 5 kvlV~GlG~SG~s~a~~L~~-~g~~v~-~~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~vv--~SPGi~~~ 72 (418) T PRK00683 5 RVVVLGLGVTGKSVARFLAQ-KGVYVI-GVDNSLEALQSC--------PYIHERYLEGAEEFPEQVDLVV--RSPGIKPY 72 (418) T ss_pred EEEEEEECHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHC--------CHHHHHCCCCHHHCCCCCCEEE--ECCCCCCC T ss_conf 69998088879999999997-829899-982981454546--------1455540562332423498999--89985998 Q ss_pred -HHHHHHHHCCCE--------------------EEEEECCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHH Q ss_conf -888764323721--------------------576502223135899987403--5552100001156899999 Q gi|254780279|r 86 -QSLNISAQHNIV--------------------HIIGTTGFSVKENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 86 -~~~~~a~~~g~~--------------------vViGTTG~~~e~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 73 ~p~~~~a~~~~i~i~seiel~~~~~~~~~~~~IaITGTNGKTTT-t~ll~~iL~~~g~~~~~~GNI--G~p~l~~ 144 (418) T PRK00683 73 HPWVEAAVALKIPVVTDIQLAFQTPEFQRYPSLGITGSTGKTTT-ILFLEHLLRTLGIPAFAMGNI--GLPILDG 144 (418) T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEH-HHHHHHHHHHCCCCCEEEECC--CHHHHHH T ss_conf 89999999869975407999974244147987999768986609-999999998679981888034--6577764 |
|
| >pfam00107 ADH_zinc_N Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.35 Score=28.23 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=60.6 Q ss_pred HHHHHHHHHHHCCCC-EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEEE-CCCHHHHH Q ss_conf 799999999838997-899999648980204553666087546754556857852----1--355047631-01024788 Q gi|254780279|r 16 MGQALIKEIHNNPSI-TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDFS-SPALTLQS 87 (280) Q Consensus 16 MG~~ii~~i~~~~~~-eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDFT-~P~~~~~~ 87 (280) T Consensus 2 iG~~~iq~ak-~~Ga~~Vi-~~~~~~~r~---~~a~~lGa~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~ 76 (131) T pfam00107 2 VGLAAVQLAK-ALGAARVI-AVDRSEEKL---ELAKELGADHVINYRDEDFVERVRELTGGRGVDVVIDCVGAPATLEQA 76 (131) T ss_pred HHHHHHHHHH-HCCCCEEE-EEECCHHHH---HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHH T ss_conf 5899999999-84998799-996988999---999975997323533221245565404997764988668866679999 Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 8764323721576502223135899987403555210000115 Q gi|254780279|r 88 LNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 88 ~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 77 ~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~k~i~i~Gs~~~~~ 119 (131) T pfam00107 77 LELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGR 119 (131) T ss_pred HHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCEEEEEECCCCH T ss_conf 8753599789999467899740538999869859999814899 |
|
| >pfam02254 TrkA_N TrkA-N domain | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.38 Score=27.98 Aligned_cols=102 Identities=17% Similarity=0.327 Sum_probs=46.1 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCC-CCCHHHH-HCCCCEEEEEE-CCCH Q ss_conf 9998998779999999983899789999964898020455366608754-67545-5685785-21355047631-0102 Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKF-SDNLAMA-IQSVDGIIDFS-SPAL 83 (280) Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i-~~dl~~~-~~~~DViIDFT-~P~~ 83 (280) T Consensus 1 viI~G~g~~G~~la~~L~~~~--~v-~vId~d~~~~~--~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~ 74 (115) T pfam02254 1 IIIIGYGRVGRSLAEELREGG--PV-VVIDKDPERVE--ELRE-EGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEA 74 (115) T ss_pred CEEECCCHHHHHHHHHHHHCC--CE-EEEECCHHHHH--HHHH-CCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHH T ss_conf 999878889999999998089--99-99999879987--7886-698699995688667876192028799996298499 Q ss_pred HHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH Q ss_conf 4788876432-37215765022231358999874 Q gi|254780279|r 84 TLQSLNISAQ-HNIVHIIGTTGFSVKENEVISSF 116 (280) Q Consensus 84 ~~~~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~ 116 (280) T Consensus 75 n~~~~~~~r~~~~~~~ii-ar~~~~~~~~~l~~~ 107 (115) T pfam02254 75 NILIVLLARELNPAKKII-ARANDPEHAELLRRL 107 (115) T ss_pred HHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHC T ss_conf 999999999978998099-998789999999976 |
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.65 Score=26.38 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=68.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHH---HCCCC-------------CCCCCCCCCHH Q ss_conf 737999899877999999998389978999996489802--0455366---60875-------------46754556857 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGN---FVGIS-------------PMGIKFSDNLA 66 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~---~~~~~-------------~~~v~i~~dl~ 66 (280) T Consensus 38 g~~vaIQGfGnVG~~aA~~l~e-~GakvVaVsD~~G~i~~~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 116 (254) T cd05313 38 GKRVAISGSGNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK 116 (254) T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCCC T ss_conf 9999998977999999999997-799799998578508879999889999999999746871024441389856638975 Q ss_pred HHHCCCCEEEEEECCCHH-HHHHHHHHHCCCEEEE-EECCCC-HHHHHHHHHHHCCCCCEECCCH Q ss_conf 852135504763101024-7888764323721576-502223-1358999874035552100001 Q gi|254780279|r 67 MAIQSVDGIIDFSSPALT-LQSLNISAQHNIVHII-GTTGFS-VKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 67 ~~~~~~DViIDFT~P~~~-~~~~~~a~~~g~~vVi-GTTG~~-~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 117 ~~~~~cDIliPaA~en~I~~~nA~~i~a~~ck~IvEgANgP~T~eAd~iL~~--k--GI~viPDi 177 (254) T cd05313 117 PWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQ--A--GVLFAPGK 177 (254) T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH--C--CCEEECHH T ss_conf 1330476997435466789999999996798299865889998789999998--8--98896805 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.24 Score=29.33 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=73.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280) T Consensus 2 ~Ki~~~~~~~~e~~~~~~~~~~~~~e~~~~~~----------------------~~~~~~~~~~~~~d~v~~~~~~~i~~ 59 (330) T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----------------------LLSSATVDQLKDYDGVTTMQFGKLEN 59 (330) T ss_pred CEEEEEECCHHHHHHHHHHHHHCCEEEEEECC----------------------CCCHHHHHHHCCCCEEEEEECCCCCH T ss_conf 66999837686699999988774906999569----------------------89989999847999899960797899 Q ss_pred HHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCCCEECCCHHHH Q ss_conf 888764323721576-5022231358999874035552100001156 Q gi|254780279|r 86 QSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280) Q Consensus 86 ~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280) T Consensus 60 evl~~l~~~~LK~I~~~gvG~D~IDl~aa~~--~GI~V~n~P~~~~~ 104 (330) T PRK12480 60 DVYPKLESYGIKQIAQRTAGFDMYDLDLAKK--HNIVISNVPSYSPE 104 (330) T ss_pred HHHHHHHHCCCEEEEECCEECCHHCHHHHHH--CCCEEEECCCCCHH T ss_conf 9999655679759998772175216999997--89999959986828 |
|
| >KOG4354 consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.33 Score=28.38 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=66.4 Q ss_pred CCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCC-CCCCHHHHHC-C-CCEEEE Q ss_conf 988737999899-87799999999838997899999648980204553666087546754-5568578521-3-550476 Q gi|254780279|r 2 HQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK-FSDNLAMAIQ-S-VDGIID 77 (280) Q Consensus 2 ~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~-i~~dl~~~~~-~-~DViID 77 (280) T Consensus 16 ~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssre---l~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wv- 91 (340) T KOG4354 16 PEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRE---LAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWV- 91 (340) T ss_pred CCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHH---HCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCEEEEE- T ss_conf 689825998733665416699886389736888632254---3477156743221232344246678762577645566- Q ss_pred EECCCHHHH-HHHHH-HHCCCEEEEEEC-------------CCCHH-HHHHHHHHHCC-CCCEECCCHHHHHHHH Q ss_conf 310102478-88764-323721576502-------------22313-58999874035-5521000011568999 Q gi|254780279|r 78 FSSPALTLQ-SLNIS-AQHNIVHIIGTT-------------GFSVK-ENEVISSFARN-APIVKSSNMSLGINFL 135 (280) Q Consensus 78 FT~P~~~~~-~~~~a-~~~g~~vViGTT-------------G~~~e-~~~~l~~~s~~-~~il~apN~SiGv~ll 135 (280) T Consensus 92 maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~iaNPGCYaTgsQl~l~Pl 166 (340) T KOG4354 92 MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARLIANPGCYATGSQLPLVPL 166 (340) T ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 525415678888887623771466311033347754020106710043888754040269973245672564477 |
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.69 Score=26.23 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=56.0 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEE Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852----1--35504763 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDF 78 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDF 78 (280) T Consensus 144 ~~VLv~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~----y~~~d~~~~v~~~t~g~gvDvv~D~ 218 (326) T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN----YREEDFVEQVRELTGGKGVDVVLDT 218 (326) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCCEEEE----CCCCCHHHHHHHHHCCCCCCEEEEC T ss_conf 9799977854699999999998499-5899981757889998739988970----5642489999998379987889979 Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf 10102478887643237215765022 Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326) T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALS 244 (326) T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 86799999999742595899980688 |
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.19 Score=30.09 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=65.3 Q ss_pred EEEEECCCHHHH--HHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCC-CCCCH--HHHHCCCCEEEEEECC Q ss_conf 799989987799--999999838997899999648980204553666087546754-55685--7852135504763101 Q gi|254780279|r 7 RISVLGGGRMGQ--ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK-FSDNL--AMAIQSVDGIIDFSSP 81 (280) Q Consensus 7 kV~I~GaGkMG~--~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~-i~~dl--~~~~~~~DViIDFT~P 81 (280) T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~-~g~~~~~~D~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~vv--~SP 74 (476) T TIGR01087 1 KILILGLGKTGRGVAVARFLKK-KGAEVTVTDDDPEEE-L--ERSKGQLKLSEGVVLYTGGKDDLEDLNNADLVV--LSP 74 (476) T ss_pred CEEEEEECCCCHHHHHHHHHHH-CCCEEEEEECCCCCC-C--CCHHHHCCCCCCEEEEECCCCCCCCCCCCEEEE--ECC T ss_conf 9789986751078999999997-298799998452213-4--311331245564135326753101233420799--789 Q ss_pred CHHH--HHHHHHHHCCCEE---------------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH Q ss_conf 0247--8887643237215---------------------765022231358999874035--55210000115689999 Q gi|254780279|r 82 ALTL--QSLNISAQHNIVH---------------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG 136 (280) Q Consensus 82 ~~~~--~~~~~a~~~g~~v---------------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280) T Consensus 75 Gi~~~hp~~~~a~~~g~~v~gdi~L~~~~~~~~~~~~~~aITGTnGKtT-TT~L~~~~L~~~G~~a~~gGNI--G~p~L~ 151 (476) T TIGR01087 75 GIPPDHPLVQAAAKRGIPVVGDIELALRLVDFPEPAKVVAITGTNGKTT-TTSLLYHLLKAAGLKAVLGGNI--GTPALE 151 (476) T ss_pred CCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEEECCCCHHH-HHHHHHHHHHHCCCCEEEECCC--CCHHHH T ss_conf 8986777999999669808986799997415789873799972686079-9999999998469977862578--812555 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.17 Score=30.44 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=54.1 Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH----H--CCCCEEEEE Q ss_conf 37999899-8779999999983899789999964898020455366608754675455685785----2--135504763 Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA----I--QSVDGIIDF 78 (280) Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~----~--~~~DViIDF 78 (280) T Consensus 142 ~~vLi~gaaGgVG~~avQlAk-~~Ga~Vi~t~~s~~k~e~~~~lGA~~vi~----~~~~~~~~~i~~~t~g~gvdvv~D~ 216 (327) T PRK10754 142 EQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGSAQKAQRALKAGAWQVIN----YREENIVERVKEITGGKKVRVVYDS 216 (327) T ss_pred CEEEEECCCCCCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCEEEE----CCCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 999998177611268999999-86999999989899999999669999998----9999999999998689983699989 Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf 10102478887643237215765022 Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 217 vG~~~~~~~~~~l~~~G~iv~~G~~~ 242 (327) T PRK10754 217 VGKDTWEASLDCLQRRGLMVSFGNAS 242 (327) T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 88899999999863498999980688 |
|
| >KOG2018 consensus | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.35 Score=28.27 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=57.0 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHH------------HHC---CCCCCCCCC- Q ss_conf 79998998779999999983899789999964898020---------45536------------660---875467545- Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVG------------NFV---GISPMGIKF- 61 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~------------~~~---~~~~~~v~i- 61 (280) T Consensus 76 yVVVVG~GgVGSwv~nmL~R-SG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~ 154 (430) T KOG2018 76 YVVVVGAGGVGSWVANMLLR-SGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT 154 (430) T ss_pred EEEEEECCCHHHHHHHHHHH-HCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECHHHHHCC T ss_conf 79999168522999999998-26863899531014575632235246765388168999999985286012008776318 Q ss_pred CCCHHH-HHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 568578-521355047631-01024788876432372157650222 Q gi|254780279|r 62 SDNLAM-AIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTTGF 105 (280) Q Consensus 62 ~~dl~~-~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280) T Consensus 155 ~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~Ga 199 (430) T KOG2018 155 SSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGA 199 (430) T ss_pred CCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEE-CCCC T ss_conf 77522342279985767121021255799999876985673-3674 |
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.3 Score=28.73 Aligned_cols=98 Identities=10% Similarity=0.154 Sum_probs=61.3 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-CCH Q ss_conf 7379998998779999999983899789999964898020455366608754675455685785213550476310-102 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS-PAL 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~-P~~ 83 (280) T Consensus 129 ~~~l~iiG~G~Qa~~~~~al~~v~~i~~i~v~~r~~~~~~-~fa~~~~~~~~~~v~~~~~~~~~~-~aDiI~taT~s~~P 206 (326) T PRK06046 129 SKVIGIIGAGNQARTQLEALSRVFDLEEVRVYDRTKESCE-KFISEMSDFVPCEIVYEEDVEEAC-DCDILVTTTPSRKP 206 (326) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHCCCCEEECCCHHHHH-CCCEEEEEECCCCC T ss_conf 8558996570889999999997389778999918999999-999999865598659739999982-79999998289984 Q ss_pred HHHHHHHHHHCCCEEE-EEECCCC Q ss_conf 4788876432372157-6502223 Q gi|254780279|r 84 TLQSLNISAQHNIVHI-IGTTGFS 106 (280) Q Consensus 84 ~~~~~~~a~~~g~~vV-iGTTG~~ 106 (280) T Consensus 207 ~~~--~~~l~pG~hi~~iG~~~p~ 228 (326) T PRK06046 207 VVK--ADWVKEGTHINAIGADAPG 228 (326) T ss_pred EEC--CCCCCCCCEEEECCCCCCC T ss_conf 514--4335787177412689866 |
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.18 Score=30.25 Aligned_cols=93 Identities=9% Similarity=0.037 Sum_probs=61.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-CCH Q ss_conf 7379998998779999999983899789999964898020455366608754675455685785213550476310-102 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS-PAL 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~-P~~ 83 (280) T Consensus 125 ~~~l~iiGaG~QA~~~~~a~~~v~~~~~V~v~~r~~~~a~~--~~~~~~~~-~~~~~~~~~e~av~~aDiI~taT~S~~P 201 (304) T PRK07340 125 PRDLLLIGTGVQAAHHLEALAALLPVRRVWVRGRTAASAAA--FCAAARAL-GPTLEPLDGDAIPPAVDVVVTVTTSRTP 201 (304) T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--HHHHHHCC-CCCEEECCHHHHHHHCCEEEEECCCCCC T ss_conf 75179973479999999999985997489998799899999--99998600-9917976899998428989994189976 Q ss_pred HHHHHHHHHHCCCEEE-EEEC Q ss_conf 4788876432372157-6502 Q gi|254780279|r 84 TLQSLNISAQHNIVHI-IGTT 103 (280) Q Consensus 84 ~~~~~~~a~~~g~~vV-iGTT 103 (280) T Consensus 202 v---~~~~~~~g~hI~aiGs~ 219 (304) T PRK07340 202 V---YPEAARAGRLVVGVGAF 219 (304) T ss_pred C---CCCCCCCCEEEECCCCC T ss_conf 4---46557998189413789 |
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.49 Score=27.22 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=62.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCC Q ss_conf 7379998998779999999983899789999964898020455366608754675455--68578521355047631010 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPA 82 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~ 82 (280) T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~--~~~~~~~---~~~~~i~~~~g~~~~~~~~~~d~vV--~SPG 78 (448) T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAP--EGLAAQP---LLLEGIEVELGSHDDEDLAEFDLVV--KSPG 78 (448) T ss_pred CCEEEEEECCCCCHHHHHHHHHC-CCEEEEECCCCCC--CCHHHHH---HHCCCCEEECCCCCHHCCCCCCEEE--ECCC T ss_conf 99799992665109999999977-9869998389876--5323444---4203722313764110013477899--8999 Q ss_pred HH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHH Q ss_conf 24--78887643237215---------------7650222313--58999874035--5521000011568 Q gi|254780279|r 83 LT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGI 132 (280) Q Consensus 83 ~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv 132 (280) T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448) T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448) T ss_pred CCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCH T ss_conf 99988899999986993774888898744899989997999628899999999985599832135167137 |
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.81 Score=25.75 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=64.3 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHCCCHHHHCCCCC--------CCCCCCCCHHHHHCCCC Q ss_conf 87379998998779999999983899789999964898--020455366608754--------67545568578521355 Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--PLIGQDVGNFVGISP--------MGIKFSDNLAMAIQSVD 73 (280) Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--~~~g~d~~~~~~~~~--------~~v~i~~dl~~~~~~~D 73 (280) T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~-GAkvv~~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cD 284 (411) T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCD 284 (411) T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC T ss_conf 887899977628999999999974-9979999767884416777788999877664445876348667265130045775 Q ss_pred EEEEEECCCHH-HHHHHHHHHCCCEEEEE-ECCCCH-HHHHHHHHHHCCCCCEECCCHHH Q ss_conf 04763101024-78887643237215765-022231-35899987403555210000115 Q gi|254780279|r 74 GIIDFSSPALT-LQSLNISAQHNIVHIIG-TTGFSV-KENEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 74 ViIDFT~P~~~-~~~~~~a~~~g~~vViG-TTG~~~-e~~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 285 Il~PcA~~n~I~~~na~~---l~ak~V~EgAN~P~t~eA~~i~~----erGIl~~PD~la 337 (411) T COG0334 285 ILIPCALENVITEDNADQ---LKAKIVVEGANGPTTPEADEILL----ERGILVVPDILA 337 (411) T ss_pred EECCCCCCCCCCHHHHHH---HHCCEEEECCCCCCCHHHHHHHH----HCCCEECCHHHC T ss_conf 771044436256321887---50027985267999877899999----789888271322 |
|
| >pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325) | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.7 Score=26.18 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=53.4 Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE---CCC Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578521355047631---010 Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS---SPA 82 (280) Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT---~P~ 82 (280) T Consensus 1 svLiIGG~~~~~~~~~~~~~-~~G~~~~~h~~g~~-------------------~~~~~l~~~i~~aDlVI~~td~vsH~ 60 (96) T pfam10087 1 SVLIVGGRDDRLGHYRKLLE-KYGGEFIVHDGGRE-------------------KKKKKIPALLKKADLVIVFTDCVSHD 60 (96) T ss_pred CEEEECCCHHHHHHHHHHHH-HCCCEEEEECCCCC-------------------CHHHHHHHCCCCCCEEEEECCCCCHH T ss_conf 99999585567899999999-83998999658987-------------------33556775058988899971766879 Q ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHH Q ss_conf 24788876432372157650-22231358999874 Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSF 116 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~ 116 (280) T Consensus 61 ~~~~vK~~akk~~~p~v~~~s~s~~~-l~~~l~~~ 94 (96) T pfam10087 61 AMWRVKEEAKKRGIPVVFSRSRSLSA-LERALARL 94 (96) T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHH-HHHHHHHH T ss_conf 99999999998499789976874999-99999996 |
Members of this family of hypothetical bacterial proteins have no known function. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.89 Score=25.47 Aligned_cols=112 Identities=9% Similarity=0.144 Sum_probs=66.4 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-----------CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCC Q ss_conf 737999899877999999998389-----------978999996489802045536660875467545568578521355 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-----------SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVD 73 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-----------~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~D 73 (280) T Consensus 3 ~~~vlv~G~-~FG~~Yl~A~~~~~~lWaarPahl~r~~L~GlLAqGS~R--SR~LA~-----~lGvpLy~~ve~lp~~~~ 74 (378) T TIGR01761 3 KQSVLVCGT-RFGEVYLAAFAAAPRLWAARPAHLERFELAGLLAQGSER--SRALAH-----RLGVPLYSEVEELPDDID 74 (378) T ss_pred CCEEEEEEC-CHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEEHHCCHH--HHHHHH-----HHCCCCCCCHHHCCCCCC T ss_conf 857999616-667899997267855741363436773244110010368--999999-----809841067100468875 Q ss_pred ---EEEEEEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC Q ss_conf ---0476310-102478887643237215765022231358999874035552100 Q gi|254780279|r 74 ---GIIDFSS-PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS 125 (280) Q Consensus 74 ---ViIDFT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a 125 (280) T Consensus 75 ~ACvvvRSa~~Gg~G~~LA~aLL~RGi~VLqE-HPl~p~d~~~L~~lA~~~Gr~Y~ 129 (378) T TIGR01761 75 IACVVVRSAIVGGKGSELARALLKRGIHVLQE-HPLHPEDIAELLRLAERQGRRYL 129 (378) T ss_pred EEEEEEEEEEECCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHHCCCEEE T ss_conf 55888522531797258999998567515632-89887789999999997098664 |
Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . . |
| >pfam06408 consensus | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.26 Score=29.16 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=76.1 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEE--EEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHC----CC---CEEE Q ss_conf 79998998779999999983899789--999964898020455366608754675455-68578521----35---5047 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITL--HSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQ----SV---DGII 76 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eL--v~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~----~~---DViI 76 (280) T Consensus 3 ~Iv~iGfGSIgq~~LPLl~rH~~~~~~~Itiid~~d~~~-~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv 81 (471) T pfam06408 3 PILMIGFGSIGRGTLPLIERHFKFDRSNIVVIDPRDTKK-DRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV 81 (471) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCHHHEEEECCCCCHH-HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 779987571674206788876078878989976787545-6677875697688614587889999999862677788799 Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEEC-----CCCHH--------H----HHHHHHHHC---C-CCCE--ECCCHHHHHH Q ss_conf 631010247888764323721576502-----22313--------5----899987403---5-5521--0000115689 Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTT-----GFSVK--------E----NEVISSFAR---N-APIV--KSSNMSLGIN 133 (280) Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTT-----G~~~e--------~----~~~l~~~s~---~-~~il--~apN~SiGv~ 133 (280) T Consensus 82 nLSvniss~~ii~~C~e~GvlYld-T~iEpW~g~y~d~~~~p~~RTnYalre~~r~~~~~~~~GpTAv~~hGANPGlVSh 160 (471) T pfam06408 82 NLSVDTSSLDLMRLCREHGVLYVD-TVVEPWLGFYFDADADNEARTNYALRETVRELKRDWPGGPTAVSTCGANPGMVSW 160 (471) T ss_pred EEECCCCHHHHHHHHHHHCCEEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH T ss_conf 801157889999999980987755-4403568866677798556666999999999996579998077746899518999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999861 Q gi|254780279|r 134 FLGFLVETAAEYL 146 (280) Q Consensus 134 ll~~l~~~~a~~l 146 (280) T Consensus 161 fvKqaLldiA~~~ 173 (471) T pfam06408 161 FVKQALVDLAADL 173 (471) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999986 |
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.53 Score=26.99 Aligned_cols=100 Identities=22% Similarity=0.158 Sum_probs=52.7 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-------------CHHHCCCHHHHCC-----------CCCCCCCCC Q ss_conf 7999899877999999998389978999996489-------------8020455366608-----------754675455 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG-------------SPLIGQDVGNFVG-----------ISPMGIKFS 62 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~-------------~~~~g~d~~~~~~-----------~~~~~v~i~ 62 (280) T Consensus 1 kvlvvG~GglG~e~~k~la~~G-vg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~ 79 (291) T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291) T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 9899928888999999999848-985999739934413565674676553687899999999998789978998505310 Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHH--------CCCEEEE-EECCCCH Q ss_conf 68578521355047631-01024788876432--------3721576-5022231 Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQ--------HNIVHII-GTTGFSV 107 (280) Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~--------~g~~vVi-GTTG~~~ 107 (280) T Consensus 80 ~~~~~f~~~fdvVi~~lDn~~aR~~vN~~~v~~~~~~~~~~~~PlidgGt~G~~G 134 (291) T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKG 134 (291) T ss_pred HCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCE T ss_conf 0789899519999988789999999999998743135544577468602566530 |
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.15 Score=30.83 Aligned_cols=117 Identities=16% Similarity=0.321 Sum_probs=71.1 Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHH-HHCC--CCEEEEEEC-C Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578-5213--550476310-1 Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAM-AIQS--VDGIIDFSS-P 81 (280) Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~-~~~~--~DViIDFT~-P 81 (280) T Consensus 1 ~vAiVGATG~VGq~~lk~L-eeR~FP~~~~~~~AS~RS~G~~~~F----~gke~~v~~~~~~n~F~gekidIAl-FSAGg 74 (350) T TIGR01296 1 NVAIVGATGAVGQEMLKIL-EERNFPIDKLVLLASERSAGRKVTF----KGKELEVEEAKKENSFEGEKIDIAL-FSAGG 74 (350) T ss_pred CEEEEECCCHHHHHHHHHH-HCCCCCHHHHHHHCCCCCCCCEEEE----CCCEEEEECCCCCCCCCCCEEEEEE-ECCCH T ss_conf 9478962674799998764-1367877556441056788857851----2753660101001488877033456-51531 Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCC-HHH---------HHHHHHHHCCCCCEECCCHHH Q ss_conf 0247888764323721576502223-135---------899987403555210000115 Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFS-VKE---------NEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~-~e~---------~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 75 svSke~aP~a~k~g~~VIDntS~fR~D~dVPLVVPEVN~~~~~~~-~~kgIIANPNCst 132 (350) T TIGR01296 75 SVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNLEDLKEF-NKKGIIANPNCST 132 (350) T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHCC-CCCCCEECCCCCH T ss_conf 334888788860875798176200057898634437784776347-8888145886007 |
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process. |
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1 Score=25.10 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=66.4 Q ss_pred EEEEECC----CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC Q ss_conf 7999899----877999999998389978999996489802045536660875467545568578521355047631010 Q gi|254780279|r 7 RISVLGG----GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280) Q Consensus 7 kV~I~Ga----GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280) T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV----NP~~~~---~ei-----LG~k~y~sL~dIpe~IDiVdvFR~~e 84 (140) T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV----NPKLAG---EEI-----LGEKVYPSLADIPEPIDIVDVFRRSE 84 (140) T ss_pred EEEEEECCCCCCCCHHHHHHHHH-HCCCEEEEE----CCCCCH---HHH-----CCCHHHHCHHHCCCCCCEEEEECCHH T ss_conf 69999457999861889999999-789989955----855205---776-----28311205875887775799852865 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHH Q ss_conf 2478887643237215765022231358 Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280) Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280) T Consensus 85 ~~~~i~~eal~~~~kv~W~QlGi~n~ea 112 (140) T COG1832 85 AAPEVAREALEKGAKVVWLQLGIRNEEA 112 (140) T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHH T ss_conf 6388999999617885997458579899 |
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.1 Score=24.82 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=66.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHCCCHHHHCCCCC---------CCCCCCCCHHHHHCCCC Q ss_conf 73799989987799999999838997899999648980--20455366608754---------67545568578521355 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP--LIGQDVGNFVGISP---------MGIKFSDNLAMAIQSVD 73 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~--~~g~d~~~~~~~~~---------~~v~i~~dl~~~~~~~D 73 (280) T Consensus 31 g~~v~IqG~GnVG~~~a~~L~~-~Gakvv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 108 (227) T cd01076 31 GARVAIQGFGNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNE-ELLELDCD 108 (227) T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC-CHHCCCCC T ss_conf 9999998988999999999998-799599998478738888889999999999965980267887538962-31047887 Q ss_pred EEEEEECCCHH-HHHHHHHHHCCCEEEEEE-CC-CCHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 04763101024-788876432372157650-22-23135899987403555210000115 Q gi|254780279|r 74 GIIDFSSPALT-LQSLNISAQHNIVHIIGT-TG-FSVKENEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 74 ViIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG-~~~e~~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 109 I~iP~A~~~~I~~~~a~---~l~ak~I~EgAN~p~t~~A~~~L~----~rgI~viPD~la 161 (227) T cd01076 109 ILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEILH----ERGVLVVPDILA 161 (227) T ss_pred EEEECCCCCCCCHHHHH---HCCCEEEEECCCCCCCHHHHHHHH----HCCCEEECCHHH T ss_conf 89877766977999985---447619984578998988999999----886989680774 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.1 Score=24.78 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=41.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH Q ss_conf 73799989987799999999838-99789999964898020455366608754675455685785213550476310102 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280) T Consensus 1 m~nILvt~~G~-~~~ii~~lk~~~~~~~Vi~-~D~~~~a-~-------------~~~~a-------D~~y~~P~~~d~~y 57 (325) T PRK12767 1 MMNILVTSAGR-RVQLVKALKKSLLGGKVIG-ADISPLA-P-------------ALYFA-------DKFYVVPKVTDPNY 57 (325) T ss_pred CCEEEEECCCC-HHHHHHHHHHCCCCCEEEE-ECCCCCC-C-------------CHHHC-------CEEEECCCCCCHHH T ss_conf 94899986786-8999999997699859999-6899899-5-------------34454-------88998788898789 Q ss_pred HHHHHHHHHHCCCEEEEEECC Q ss_conf 478887643237215765022 Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTG 104 (280) Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG 104 (280) T Consensus 58 ~~~ll~i~~~~~id~iiP~~d 78 (325) T PRK12767 58 IDALLDICKKENIDALIPLID 78 (325) T ss_pred HHHHHHHHHHHCCCEEEECCC T ss_conf 999999999879999997785 |
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.11 Score=31.56 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=62.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCC-CCC-CCCCCC-CCH-HHHHCCCCEEEEEECC Q ss_conf 379998998779999999983899789999964898020455366608-754-675455-685-7852135504763101 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVG-ISP-MGIKFS-DNL-AMAIQSVDGIIDFSSP 81 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~-~~~-~~v~i~-~dl-~~~~~~~DViIDFT~P 81 (280) T Consensus 233 ~~v~I~Ggg~ig~~la~~L~--~~~~v-~iIe~d~~~~--~~la~~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia~T~~ 307 (455) T PRK09496 233 KRIMIAGGGNIGLYLAKLLE--KGYSV-KLIERDPERA--EELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (455) T ss_pred CEEEEECCCHHHHHHHHHHH--CCCEE-EEECCCHHHH--HHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEEECCC T ss_conf 51899878699999999874--08838-9970898999--9999747853999788768899976364556489990388 Q ss_pred CHH-HHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHCCCCCEECCCHHHHHHHHHH Q ss_conf 024-78887643237215765022231-358999874035552100001156899999 Q gi|254780279|r 82 ALT-LQSLNISAQHNIVHIIGTTGFSV-KENEVISSFARNAPIVKSSNMSLGINFLGF 137 (280) Q Consensus 82 ~~~-~~~~~~a~~~g~~vViGTTG~~~-e~~~~l~~~s~~~~il~apN~SiGv~ll~~ 137 (280) T Consensus 308 De~Ni~~~llAk~~g~~~~ia~--v~~~~y~~l~~~l--gid~~isp~~~~a~~I~~~ 361 (455) T PRK09496 308 DEANILSSLLAKRLGAKKVIAL--INRSAYVDLVQGL--GIDIAISPRQATISAILRH 361 (455) T ss_pred HHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHC--CCCEEECHHHHHHHHHHHH T ss_conf 1889999999987399736888--4466788765324--8865788899999999998 |
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine) | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.083 Score=32.51 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=79.4 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHH Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310102478 Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTLQ 86 (280) Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~~ 86 (280) T Consensus 131 ~~a~~GAG~QArLQL~AL~LvRdI~~ariWAR~~akA-e~~A~~L~~~~G~~v~a~td~~~A~~~ADI~vT-tTP~~~Pv 208 (326) T TIGR02992 131 VVAILGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQLSSELGIDVTAATDVRAALSGADIIVT-TTPSETPV 208 (326) T ss_pred HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHH-HHHHHHHHHHCCEEEEECCCHHHHCCCCCEEEE-CCCCCCCC T ss_conf 7767525567899999986315214432102556789-999999887469068750476862366887987-48798730 Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHH Q ss_conf 887643237215765022231358999874 Q gi|254780279|r 87 SLNISAQHNIVHIIGTTGFSVKENEVISSF 116 (280) Q Consensus 87 ~~~~a~~~g~~vViGTTG~~~e~~~~l~~~ 116 (280) T Consensus 209 l~a~wL~pGqh~t--AMGsD~EHKnE~~P~ 236 (326) T TIGR02992 209 LKAEWLEPGQHVT--AMGSDAEHKNEIDPA 236 (326) T ss_pred HHHHHCCCCCEEE--EECCCCCCCCCCCHH T ss_conf 2073367887898--606770122343647 |
Members belong to the ornithine cyclodeaminase/mu-crystallin family.. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.76 Score=25.93 Aligned_cols=118 Identities=18% Similarity=0.346 Sum_probs=76.7 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHH------CCCCEEEEEEECCCCH--HHCCCHHHHCCCC-C--CCCCCCCCHHHHHCC Q ss_conf 8737999899-8779999999983------8997899999648980--2045536660875-4--675455685785213 Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHN------NPSITLHSIIVRSGSP--LIGQDVGNFVGIS-P--MGIKFSDNLAMAIQS 71 (280) Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~------~~~~eLv~~i~~~~~~--~~g~d~~~~~~~~-~--~~v~i~~dl~~~~~~ 71 (280) T Consensus 2 ~p~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~-LLdIP~A~~~LeGV-~MEL~DCAFPlL~~v~~T~~p~eAF~d 79 (329) T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDIPQAMKALEGV-VMELEDCAFPLLAGVVATTDPEEAFKD 79 (329) T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCHHHHHHHHHH-HHHHHCCCCCCCCCCEECCCHHHHHCC T ss_conf 9537997374467899998898556104889846888-60772331133443-553530645223511221686875189 Q ss_pred CCEEEEEE--CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC-CCCEECCCHHHH Q ss_conf 55047631--0102478887643237215765022231358999874035-552100001156 Q gi|254780279|r 72 VDGIIDFS--SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN-APIVKSSNMSLG 131 (280) Q Consensus 72 ~DViIDFT--~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~-~~il~apN~SiG 131 (280) T Consensus 80 vD~AlLvGa~PRK~GMER~DLL~~Ng~I-------F~-~QG~aLn~~Ak~~vKVLVVGNPaNT 134 (329) T TIGR01759 80 VDVALLVGAFPRKPGMERRDLLSKNGKI-------FK-EQGKALNKVAKKDVKVLVVGNPANT 134 (329) T ss_pred CCEEEEECCCCCCCCCCHHHHHHHCCHH-------HH-HHHHHHHHHCCCCCEEEEECCCCHH T ss_conf 8757761366895884479998722254-------68-7999999861898569985298627 |
The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process. |
| >pfam04321 RmlD_sub_bind RmlD substrate binding domain | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.2 Score=24.49 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=44.4 Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEE---CC Q ss_conf 999899-877999999998389978999996489802045536660875467545568578521--355047631---01 Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFS---SP 81 (280) Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT---~P 81 (280) T Consensus 1 ILVtG~~GfiGs~l~~~L~~-~g~~v~~-~~r~~~-----D~-----------~d~~~l~~~~~~~~pd~VihlAa~~~~ 62 (284) T pfam04321 1 ILVTGANGQLGRELTRLLAE-RGVEVVA-LDRPEL-----DL-----------TDPEAVAALVREARPDVVVNAAAYTAV 62 (284) T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEE-ECCCCC-----CC-----------CCHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 69964899899999999986-8998999-548625-----78-----------899999999986499799972413555 Q ss_pred C---------------HHHHHHHHHHHCCCEEEEEEC Q ss_conf 0---------------247888764323721576502 Q gi|254780279|r 82 A---------------LTLQSLNISAQHNIVHIIGTT 103 (280) Q Consensus 82 ~---------------~~~~~~~~a~~~g~~vViGTT 103 (280) T Consensus 63 ~~~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss 99 (284) T pfam04321 63 DKAESEPELAYAVNALGPGNLAEACAARGAPLIHIST 99 (284) T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 6777488889987599999999998744985798417 |
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.3 Score=24.41 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=68.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHH---CCCC---C----------CCCCCCCCHHH Q ss_conf 37999899877999999998389978999996489802--04553666---0875---4----------67545568578 Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNF---VGIS---P----------MGIKFSDNLAM 67 (280) Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~---~~~~---~----------~~v~i~~dl~~ 67 (280) T Consensus 230 k~v~IqGfGNVg~~aA~~l~e-~GakvVavSDs~G~Iy~~~Gid~~~L~~~~~~k~~~~~~l~~y~~~~~~a~~~~~~~~ 308 (446) T PRK09414 230 KTVVVSGSGNVAIYAIEKAME-LGAKVVTCSDSSGYVYDEDGITPEKLALLKEIKEVRRGRISEYAEEFPGAEYLEGQKP 308 (446) T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEECCCCCC T ss_conf 879997777799999999997-6997999983786078899989999999999873379843212213899765388760 Q ss_pred HHCCCCEEEEEECCCH-HHHHHHHHHHCCCEEEE-EECCCC-HHHHHHHHHHHCCCCCEECCCH Q ss_conf 5213550476310102-47888764323721576-502223-1358999874035552100001 Q gi|254780279|r 68 AIQSVDGIIDFSSPAL-TLQSLNISAQHNIVHII-GTTGFS-VKENEVISSFARNAPIVKSSNM 128 (280) Q Consensus 68 ~~~~~DViIDFT~P~~-~~~~~~~a~~~g~~vVi-GTTG~~-~e~~~~l~~~s~~~~il~apN~ 128 (280) T Consensus 309 ~~~~cDIliPaA~qn~I~~~nA~~l~a~gck~V~EGAN~P~T~eA~~il~~----~gi~v~Pd~ 368 (446) T PRK09414 309 WSVPCDIALPCATQNELDGEDAKTLIANGVKAVAEGANMPSTPEAIDVFLE----AGVLFAPGK 368 (446) T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH----CCCEEECHH T ss_conf 023554895322257889999999997697699965899989899999998----898895826 |
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.3 Score=24.28 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=62.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCCCC--------CCCCCCCCCHHHHHCCCCE Q ss_conf 737999899877999999998389978999996489802--045536660875--------4675455685785213550 Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVGIS--------PMGIKFSDNLAMAIQSVDG 74 (280) Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~~~--------~~~v~i~~dl~~~~~~~DV 74 (280) T Consensus 23 g~~vaVqGfGnVG~~~a~~l~~-~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DI 100 (217) T cd05211 23 GLTVAVQGLGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE-AILGLDVDI 100 (217) T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCE T ss_conf 9999998988999999999998-59989999857871778999869999999981896536665305986-500367768 Q ss_pred EEEEECCCHH-HHHHHHHHHCCCEEEEEE-CCC-CHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 4763101024-788876432372157650-222-3135899987403555210000115 Q gi|254780279|r 75 IIDFSSPALT-LQSLNISAQHNIVHIIGT-TGF-SVKENEVISSFARNAPIVKSSNMSL 130 (280) Q Consensus 75 iIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~-~~e~~~~l~~~s~~~~il~apN~Si 130 (280) T Consensus 101 liPaAl~~~I~~~~a~~---i~ak~I~EgAN~P~t~ea~~iL~~----rgI~viPD~la 152 (217) T cd05211 101 FAPCALGNVIDLENAKK---LKAKVVAEGANNPTTDEALRILHE----RGIVVAPDIVA 152 (217) T ss_pred EEECCCCCCCCHHHHHH---HCCEEEECCCCCCCCHHHHHHHHH----CCCEEECHHHH T ss_conf 96424458879899987---177289506789989789999997----89989476884 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Ros |