254780326
bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
GeneID in NCBI database: | 8209311 | Locus tag: | CLIBASIA_01055 |
Protein GI in NCBI database: | 254780326 | Protein Accession: | YP_003064739.1 |
Gene range: | -(218787, 220037) | Protein Length: | 416aa |
Gene description: | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein | ||
COG prediction: | [E] N-acetylglutamate synthase (N-acetylornithine aminotransferase) | ||
KEGG prediction: | argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] | ||
SEED prediction: | Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) | ||
Pathway involved in KEGG: | Arginine and proline metabolism [PATH:las00330] | ||
Subsystem involved in SEED: | Arginine Biosynthesis extended; | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | |||
315122249 | 415 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 0.0 | |
222087316 | 413 | glutamate N-acetyltransferase/amino-acid N-acetyltransf | 1 | 1e-136 | |
241206515 | 413 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 1e-134 | |
116254032 | 413 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 1e-134 | |
222149928 | 413 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 1e-134 | |
209551114 | 413 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 1e-133 | |
327193396 | 413 | glutamate N-acetyltransferase/amino-acid N-acetyltransf | 1 | 1e-132 | |
190893604 | 413 | glutamate N-acetyltransferase/amino-acid N-acetyltransf | 1 | 1e-131 | |
150397714 | 413 | bifunctional ornithine acetyltransferase/N-acetylglutam | 1 | 1e-130 | |
332716316 | 413 | amino-acid N-acetyltransferase / glutamate N-acetyltran | 1 | 1e-130 |
>gi|315122249|ref|YP_004062738.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 415 | Back alignment and organism information |
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Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/415 (76%), Positives = 361/415 (86%) Query: 2 LPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSS 61 +PIS M +S V+PV LPIKGVRLS A+LGIKYVGRDDVFLM+FD PASVAGVFTRS Sbjct: 1 MPISSFSLMSRSRVTPVPLPIKGVRLSTASLGIKYVGRDDVFLMLFDKPASVAGVFTRSR 60 Query: 62 CPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYV 121 CPSAPVDFC+ NL HGIARAL+VNSG ANAFTGKRGRD V FIA+++S+LI C+E+EVYV Sbjct: 61 CPSAPVDFCRTNLPHGIARALVVNSGNANAFTGKRGRDAVHFIAQSLSDLISCQEDEVYV 120 Query: 122 ASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT 181 ASTGIIGEFLD+ FDGV K+L +ATDDAWLDSAKAMMTTD YAK AVRTV+IDG++VT Sbjct: 121 ASTGIIGEFLDIGKFDGVFDKLLHNATDDAWLDSAKAMMTTDSYAKTAVRTVNIDGVKVT 180 Query: 182 INGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTL 241 ING+AKGAGMIAPDMATTLAFVVTDI+IS VLQ +LSEG E+SFNSITVD DTSTSDTL Sbjct: 181 INGMAKGAGMIAPDMATTLAFVVTDIDISSPVLQILLSEGVEHSFNSITVDSDTSTSDTL 240 Query: 242 LLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAA 301 +LF+TGTV N PIT + D+RLS FRP LFD+LKDLALQVVCDGEGASK+LEVTVKGA Sbjct: 241 MLFSTGTVSENVPPITSIDDQRLSTFRPVLFDILKDLALQVVCDGEGASKILEVTVKGAE 300 Query: 302 DCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIAN 361 + SAK+VA SIANSPLVKTAFAS S GWWGRIVMA+GKSG VDRD +SVWF ++RIA Sbjct: 301 NATSAKQVAFSIANSPLVKTAFASGSIGWWGRIVMAIGKSGAFVDRDSISVWFRNIRIAT 360 Query: 362 NGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 NGEPEINFSQE V SI+K++C+PI VDL IG+G+HTVWTCDFS EY+ FNSN QS Sbjct: 361 NGEPEINFSQEDVHSIMKEECIPIVVDLGIGDGVHTVWTCDFSGEYVQFNSNCQS 415 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222087316|ref|YP_002545853.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase protein [Agrobacterium radiobacter K84] Length = 413 | Back alignment and organism information |
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>gi|241206515|ref|YP_002977611.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 413 | Back alignment and organism information |
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>gi|116254032|ref|YP_769870.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 413 | Back alignment and organism information |
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>gi|222149928|ref|YP_002550885.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Agrobacterium vitis S4] Length = 413 | Back alignment and organism information |
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>gi|209551114|ref|YP_002283031.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 413 | Back alignment and organism information |
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>gi|327193396|gb|EGE60296.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase protein [Rhizobium etli CNPAF512] Length = 413 | Back alignment and organism information |
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>gi|190893604|ref|YP_001980146.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase [Rhizobium etli CIAT 652] Length = 413 | Back alignment and organism information |
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>gi|150397714|ref|YP_001328181.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase [Sinorhizobium medicae WSM419] Length = 413 | Back alignment and organism information |
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>gi|332716316|ref|YP_004443782.1| amino-acid N-acetyltransferase / glutamate N-acetyltransferase [Agrobacterium sp. H13-3] Length = 413 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
PRK05388 | 395 | PRK05388, argJ, bifunctional ornithine acetyltransferas | 1e-144 | |
cd02152 | 390 | cd02152, OAT, Ornithine acetyltransferase (OAT) family; | 1e-124 | |
COG1364 | 404 | COG1364, ArgJ, N-acetylglutamate synthase (N-acetylorni | 1e-120 | |
TIGR00120 | 404 | TIGR00120, ArgJ, glutamate N-acetyltransferase/amino-ac | 2e-81 | |
KOG2786 | 431 | KOG2786, KOG2786, KOG2786, Putative glutamate/ornithine | 1e-62 | |
pfam01960 | 387 | pfam01960, ArgJ, ArgJ family | 1e-137 | |
cd00123 | 286 | cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of L- | 9e-08 |
>gnl|CDD|180051 PRK05388, argJ, bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated | Back alignment and domain information |
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>gnl|CDD|73147 cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ | Back alignment and domain information |
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>gnl|CDD|31555 COG1364, ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|161718 TIGR00120, ArgJ, glutamate N-acetyltransferase/amino-acid acetyltransferase | Back alignment and domain information |
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>gnl|CDD|37997 KOG2786, KOG2786, KOG2786, Putative glutamate/ornithine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|145242 pfam01960, ArgJ, ArgJ family | Back alignment and domain information |
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>gnl|CDD|73146 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
PRK05388 | 404 | argJ bifunctional ornithine acetyltransferase/N-acetylg | 100.0 | |
pfam01960 | 387 | ArgJ ArgJ family. Members of the ArgJ family catalyse t | 100.0 | |
cd02152 | 390 | OAT Ornithine acetyltransferase (OAT) family; also refe | 100.0 | |
COG1364 | 404 | ArgJ N-acetylglutamate synthase (N-acetylornithine amin | 100.0 | |
KOG2786 | 431 | consensus | 100.0 | |
TIGR00120 | 430 | ArgJ arginine biosynthesis bifunctional protein ArgJ; I | 100.0 | |
cd00123 | 286 | DmpA_OAT DmpA/OAT superfamily; composed of L-aminopepti | 100.0 | |
cd02253 | 339 | DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) famil | 95.59 | |
pfam03576 | 323 | Peptidase_S58 Peptidase family S58. | 92.84 | |
COG3191 | 348 | DmpA L-aminopeptidase/D-esterase [Amino acid transport | 94.5 |
>PRK05388 argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated | Back alignment and domain information |
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>pfam01960 ArgJ ArgJ family | Back alignment and domain information |
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>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ | Back alignment and domain information |
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>COG1364 ArgJ N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism] | Back alignment and domain information |
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>KOG2786 consensus | Back alignment and domain information |
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>TIGR00120 ArgJ arginine biosynthesis bifunctional protein ArgJ; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2 | Back alignment and domain information |
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>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins | Back alignment and domain information |
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>cd02253 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates | Back alignment and domain information |
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>pfam03576 Peptidase_S58 Peptidase family S58 | Back alignment and domain information |
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>COG3191 DmpA L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
1vz6_A | 393 | Ornithine Acetyltransferase (Orf6 Gene Product- Cla | 3e-82 | |
1vz8_A | 393 | Ornithine Acetyltransferase (Orf6 Gene Product- Cla | 6e-79 | |
1vra_B | 215 | Crystal Structure Of Arginine Biosynthesis Bifuncti | 3e-48 | |
2vzk_B | 213 | Structure Of The Acyl-Enzyme Complex Of An N-Termin | 4e-43 | |
2vzk_D | 213 | Structure Of The Acyl-Enzyme Complex Of An N-Termin | 7e-43 | |
2w4n_B | 213 | Structure Of An N-Terminal Nucleophile (Ntn) Hydrol | 2e-42 | |
3it4_B | 205 | The Crystal Structure Of Ornithine Acetyltransferas | 1e-35 | |
1vra_A | 208 | Crystal Structure Of Arginine Biosynthesis Bifuncti | 2e-32 | |
3it4_A | 199 | The Crystal Structure Of Ornithine Acetyltransferas | 3e-32 | |
2vzk_A | 173 | Structure Of The Acyl-Enzyme Complex Of An N-Termin | 8e-29 |
gi|55670479|pdb|1VZ6|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product- Clavulanic Acid Biosynthesis) From Streptomyces Clavuligerus Length = 393 | Back alignment and structure |
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 137/409 (33%), Positives = 210/409 (51%), Gaps = 22/409 (5%) Query: 13 SHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKG 72 S +P +G + A +G+ GRDD ++ PA+V+ VFTRS V C+ Sbjct: 2 SDSTPKTP--RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCRE 59 Query: 73 NLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLD 132 ++ G AR ++V + AN TG G + R + +AV+ + E E+ +ASTG+IG Sbjct: 60 AVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYP 119 Query: 133 VALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMI 192 + L + A + + +A+A+MTTD K +V T+ G+AKG GM+ Sbjct: 120 MESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSV----GGATLVGIAKGVGML 175 Query: 193 APDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGN 252 PDMAT L F TD + PA + + +FN++++D DTSTSDT +LFA G Sbjct: 176 EPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLA--- 232 Query: 253 FAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALS 312 + F AL L + DGEGA+KL+EV V GA D A AK+V + Sbjct: 233 -------GEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKT 285 Query: 313 IANSPLVKTAFASESFGWWGRIVMAVGKS--GVLVDRDRLSVWFGDVRIA---NNGEPEI 367 + NSPLVKTA WGR+ MA+GK +D++R+++ FG+V + G+ Sbjct: 286 VVNSPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQAD 344 Query: 368 NFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416 + + +V ++ V I +DL I +G TV+ CD ++ Y+ NS + Sbjct: 345 DALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393 |
>gi|55670485|pdb|1VZ8|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product- Clavulanic Acid Biosynthesis) From Streptomyces Clavuligerus (Semet Structure) Length = 393 | Back alignment and structure |
>gi|66360302|pdb|1VRA|B Chain B, Crystal Structure Of Arginine Biosynthesis Bifunctional Protein Argj (10175521) From Bacillus Halodurans At 2.00 A Resolution Length = 215 | Back alignment and structure |
>gi|203282331|pdb|2VZK|B Chain B, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 213 | Back alignment and structure |
>gi|203282333|pdb|2VZK|D Chain D, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 213 | Back alignment and structure |
>gi|281500619|pdb|2W4N|B Chain B, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2, In Complex With Glutamate Length = 213 | Back alignment and structure |
>gi|290560238|pdb|3IT4|B Chain B, The Crystal Structure Of Ornithine Acetyltransferase From Mycobacterium Tuberculosis (Rv1653) At 1.7 A Length = 205 | Back alignment and structure |
>gi|66360301|pdb|1VRA|A Chain A, Crystal Structure Of Arginine Biosynthesis Bifunctional Protein Argj (10175521) From Bacillus Halodurans At 2.00 A Resolution Length = 208 | Back alignment and structure |
>gi|290560237|pdb|3IT4|A Chain A, The Crystal Structure Of Ornithine Acetyltransferase From Mycobacterium Tuberculosis (Rv1653) At 1.7 A Length = 199 | Back alignment and structure |
>gi|203282330|pdb|2VZK|A Chain A, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 173 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
1vz6_A | 393 | Ornithine acetyl-transferase; clavulanic acid, N-acetyl | 1e-75 | |
3it4_B | 205 | Arginine biosynthesis bifunctional protein ARGJ beta ch | 3e-50 | |
1vra_B | 215 | Arginine biosynthesis bifunctional protein ARGJ; 101755 | 3e-44 | |
2v4i_B | 213 | Glutamate N-acetyltransferase 2 beta chain; cytoplasm, | 4e-40 | |
1vra_A | 208 | Arginine biosynthesis bifunctional protein ARGJ; 101755 | 1e-45 | |
3it4_A | 199 | Arginine biosynthesis bifunctional protein ARGJ alpha c | 9e-41 | |
2v4i_A | 173 | Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, | 2e-37 |
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A Length = 393 | Back alignment and structure |
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Score = 278 bits (713), Expect = 1e-75 Identities = 137/402 (34%), Positives = 208/402 (51%), Gaps = 21/402 (5%) Query: 16 SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLS 75 S P +G + A +G+ GRDD ++ PA+V+ VFTRS V C+ ++ Sbjct: 4 STPKTP-RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVA 62 Query: 76 HGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVAL 135 G AR ++V + AN TG G + R + +AV+ + E E+ +ASTG+IG + Sbjct: 63 DGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMES 122 Query: 136 FDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPD 195 L + A + + +A+A+MTTD + V + T+ G+AKG GM+ PD Sbjct: 123 IREHLKTLEWPAGEGGFDRAARAIMTTDTR----PKEVRVSVGGATLVGIAKGVGMLEPD 178 Query: 196 MATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP 255 MAT L F TD + PA + + +FN++++D DTSTSDT +LFA G A Sbjct: 179 MATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAG 238 Query: 256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIAN 315 F AL L + DGEGA+KL+EV V GA D A AK+V ++ N Sbjct: 239 E----------FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVN 288 Query: 316 SPLVKTAFASESFGWWGRIVMAVGKS--GVLVDRDRLSVWFGDVRIA---NNGEPEINFS 370 SPLVKTA WGR+ MA+GK +D++R+++ FG+V + G+ + Sbjct: 289 SPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDAL 347 Query: 371 QESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412 + +V ++ V I +DL I +G TV+ CD ++ Y+ NS Sbjct: 348 RAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 389 |
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B Length = 205 | Back alignment and structure |
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>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Length = 215 | Back alignment and structure |
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>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* Length = 213 | Back alignment and structure |
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>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Length = 208 | Back alignment and structure |
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>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A Length = 199 | Back alignment and structure |
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>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* Length = 173 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
1vz6_A | 393 | Ornithine acetyl-transferase; clavulanic acid, N-acetyl | 100.0 | |
1vra_B | 215 | Arginine biosynthesis bifunctional protein ARGJ; 101755 | 100.0 | |
3it4_B | 205 | Arginine biosynthesis bifunctional protein ARGJ beta ch | 100.0 | |
2v4i_B | 213 | Glutamate N-acetyltransferase 2 beta chain; cytoplasm, | 100.0 | |
1vra_A | 208 | Arginine biosynthesis bifunctional protein ARGJ; 101755 | 100.0 | |
2v4i_A | 173 | Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, | 100.0 | |
3it4_A | 199 | Arginine biosynthesis bifunctional protein ARGJ alpha c | 100.0 | |
1b65_A | 375 | DMPA, protein (aminopeptidase); hydrolase, peptide degr | 92.87 |
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A | Back alignment and structure |
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Probab=100.00 E-value=0 Score=1109.00 Aligned_cols=384 Identities=35% Similarity=0.538 Sum_probs=366.9 Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCH Q ss_conf 89878747479999980310188946999994899869998325778534348888872358802999937872234147 Q gi|254780326|r 16 SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGK 95 (416) Q Consensus 16 ~p~l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~ 95 (416) .|.+| +||++++++||||+++|+||+||+++.||++|||||+|+|+||||+|||++++++++|+|||||||||||||+ T Consensus 5 ~~~~P--~Gf~~~~~~aGiK~~gr~Dlali~s~~p~~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~ 82 (393) T 1vz6_A 5 TPKTP--RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGL 82 (393) T ss_dssp ---CC--TTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHH T ss_pred CCCCC--CCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCH T ss_conf 98999--8679999994245799985899996899769999625875305849989975048845999960742155578 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE Q ss_conf 98999999999998764987330887114310224320222210012223458322688887643156575224668875 Q gi|254780326|r 96 RGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDI 175 (416) Q Consensus 96 ~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i 175 (416) +|++|+++|++.+|+.|+|++++||++||||||+||||++|+++||++..++++++|.+||+||||||||||... + T Consensus 83 ~G~~~a~~~~~~~a~~l~~~~~~Vlv~STGVIG~~Lp~~~i~~~i~~~~~~l~~~~~~~aA~AImTTDt~pK~~~----~ 158 (393) T 1vz6_A 83 EGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----V 158 (393) T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEE----E T ss_pred HHHHHHHHHHHHHHHHHCCCCHHEEEECCCHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEE----E T ss_conf 899999999999999849994037884030213658678999987654304586179999988856785057899----9 Q ss_pred CCCEEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 69628999985020002434522588999656439999999999860055541431676564422899632653467777 Q gi|254780326|r 176 DGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP 255 (416) Q Consensus 176 ~g~~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~ 255 (416) +++.++|.|||||||||||||||||+||||||+|+++.||++|+++|++|||||||||||||||||++||||+++ T Consensus 159 ~~~~~~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llAnG~~~----- 233 (393) T 1vz6_A 159 SVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG----- 233 (393) T ss_dssp EETTEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE----- T ss_pred EECCCEEEEEEECCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCC----- T ss_conf 610437999973253458753114788997466798999999998776123637756887777589998338877----- Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH Q ss_conf 68887777998888788999999998622630021379999824899999999987735715665555067886244532 Q gi|254780326|r 256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIV 335 (416) Q Consensus 256 i~~~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~ 335 (416) ++++.+|+++|.++|++||+|||||||||||||+|+|+||+|+.+|++|||+|+||||||||+||+||| ||||+ T Consensus 234 -----~~~~~~f~~aL~~v~~~LA~~Iv~DGEGATKli~v~V~gA~s~~~A~~vA~sIa~S~LVKTAi~G~DpN-WGRI~ 307 (393) T 1vz6_A 234 -----EVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVA 307 (393) T ss_dssp -----ECCHHHHHHHHHHHHHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHH T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHH T ss_conf -----532899999999999999999752622043379999915899999999999975488899998376998-79999 Q ss_pred HHHCCCC--CCCCHHHEEEEECCEEEEECCCC---CCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEEC Q ss_conf 2202457--76582334999899998717731---878899999986254877999972689812899954587546001 Q gi|254780326|r 336 MAVGKSG--VLVDRDRLSVWFGDVRIANNGEP---EINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHF 410 (416) Q Consensus 336 aAiG~sg--~~~d~~~i~i~ig~~~v~~~G~~---~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~i 410 (416) ||+||++ ++|||++++|+||+++|+++|.+ ..+|+|++++++|+++||.|.||||.|++++++||||||||||+| T Consensus 308 ~AiG~sg~~~~~d~~~v~i~~g~~~v~~~g~~~~~~~~~~e~~~~~~m~~~ei~I~vdL~~G~~~at~wtcDLt~~YV~I 387 (393) T 1vz6_A 308 MAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRL 387 (393) T ss_dssp HHHHTCTTCTTCCTTTCEEEETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHH T ss_pred HHHCCCCCCCCCCHHEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCHHHHEE T ss_conf 77412456677771207999899999962677887735669999987567918999997888821899927698668348 Q ss_pred CCCCCC Q ss_conf 146579 Q gi|254780326|r 411 NSNVQS 416 (416) Q Consensus 411 Na~Yrs 416 (416) |||||| T Consensus 388 Na~YrT 393 (393) T 1vz6_A 388 NSEYTT 393 (393) T ss_dssp HHC--- T ss_pred CCCCCC T ss_conf 775589 |
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} | Back alignment and structure |
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>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B | Back alignment and structure |
---|
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* 2w4n_B* | Back alignment and structure |
---|
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} | Back alignment and structure |
---|
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* | Back alignment and structure |
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>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A | Back alignment and structure |
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>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
416 | bifunctional ornithine acetyltransferase/N-acetylglutam | |||
d1vz6a_ | 383 | d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithi | 4e-79 |
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} Length = 383 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901] Score = 288 bits (739), Expect = 4e-79 Identities = 135/395 (34%), Positives = 205/395 (51%), Gaps = 20/395 (5%) Query: 23 KGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARAL 82 +G + A +G+ GRDD ++ PA+V+ VFTRS V C+ ++ G AR + Sbjct: 3 RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGV 62 Query: 83 IVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSK 142 +V + AN TG G + R + +AV+ + E E+ +ASTG+IG + L Sbjct: 63 VVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKT 122 Query: 143 MLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAF 202 + A + + +A+A+MTTD + V + T+ G+AKG GM+ PDMAT L F Sbjct: 123 LEWPAGEGGFDRAARAIMTTDTR----PKEVRVSVGGATLVGIAKGVGMLEPDMATLLTF 178 Query: 203 VVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDK 262 TD + PA + + +FN++++D DTSTSDT +LFA G A Sbjct: 179 FATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGE------ 232 Query: 263 RLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTA 322 F AL L + DGEGA+KL+EV V GA D A AK+V ++ NSPLVKTA Sbjct: 233 ----FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTA 288 Query: 323 FASESFGWWGRIVMAVGKSGVLV--DRDRLSVWFGDVRIA---NNGEPEINFSQESVRSI 377 WGR+ MA+GK D++R+++ FG+V + G+ + + +V Sbjct: 289 VHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEH 347 Query: 378 VKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412 ++ V I +DL I +G TV+ CD ++ Y+ NS Sbjct: 348 LRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 382 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
d1vz6a_ | 383 | Glutamate N-acetyltransferase 2 (ornithine acetyltransf | 100.0 | |
d1b65a_ | 367 | L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobact | 93.21 |
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901] Probab=100.00 E-value=0 Score=1077.67 Aligned_cols=377 Identities=35% Similarity=0.540 Sum_probs=361.8 Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH Q ss_conf 47479999980310188946999994899869998325778534348888872358802999937872234147989999 Q gi|254780326|r 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTV 101 (416) Q Consensus 22 i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a 101 (416) ++||++++++||||+++|+||+||++++||++|||||+|+|+||||+|||++++++++|+|||||||||||||++|++++ T Consensus 2 PkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~a 81 (383) T d1vz6a_ 2 PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENA 81 (383) T ss_dssp CTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHHH T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHH T ss_conf 98599999995366799986899995799769999736875301519989875268842999953741111158889999 Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE Q ss_conf 99999998764987330887114310224320222210012223458322688887643156575224668875696289 Q gi|254780326|r 102 RFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT 181 (416) Q Consensus 102 ~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~ 181 (416) ++|++.+|+.|+|++++||++|||||||+||+++|+++||++..++++++|++||+||||||||||.+. ++++.++ T Consensus 82 ~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~----i~~~~~~ 157 (383) T d1vz6a_ 82 REVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----VSVGGAT 157 (383) T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEE----EEETTEE T ss_pred HHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEE----EEECCCE T ss_conf 999987655304575314551242010146411334433211223234336654445306642025899----9720424 Q ss_pred EEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 99985020002434522588999656439999999999860055541431676564422899632653467777688877 Q gi|254780326|r 182 INGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSD 261 (416) Q Consensus 182 i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~ 261 (416) |.|||||||||||||||||+||||||.|+++.||++|++++++|||+|||||||||||||++||||.++. T Consensus 158 i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~---------- 227 (383) T d1vz6a_ 158 LVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGE---------- 227 (383) T ss_dssp EEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEE---------- T ss_pred EEEEEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCC---------- T ss_conf 7778601432055545247899961556768899999986414500065458888775899984587532---------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC Q ss_conf 77998888788999999998622630021379999824899999999987735715665555067886244532220245 Q gi|254780326|r 262 KRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKS 341 (416) Q Consensus 262 ~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~s 341 (416) +++.+|+++|.++|++||++||||||||||||+|+|+||+|+++|+++||+|+||||||||+||+||| ||||+||+||+ T Consensus 228 ~~~~~f~~aL~~v~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpN-WGRI~aAiG~~ 306 (383) T d1vz6a_ 228 VDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVAMAIGKC 306 (383) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHTC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCC T ss_conf 10787777788999999999863653322589999805899999999999975229999887345884-77777664235 Q ss_pred C--CCCCHHHEEEEECCEEEEECCC---CCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEECCCC Q ss_conf 7--7658233499989999871773---1878899999986254877999972689812899954587546001146 Q gi|254780326|r 342 G--VLVDRDRLSVWFGDVRIANNGE---PEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSN 413 (416) Q Consensus 342 g--~~~d~~~i~i~ig~~~v~~~G~---~~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~ 413 (416) + ++|||++++|++|+++++++|. ...+|+|++++++|+++||+|.||||.|++++++||||||||||+|||| T Consensus 307 ~~~~~~d~~~i~i~~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad 383 (383) T d1vz6a_ 307 SDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 383 (383) T ss_dssp TTCTTCCTTTCEEEETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC T ss_pred CCCCCCCHHHEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC T ss_conf 67766662425999899999963667887733559999987457848999997888922899907698322102689 |
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylg | ||
1vz6_A_1-261 | 261 | (A:1-261) Ornithine acetyl-transferase; clavulanic | 7e-76 | |
1vra_B_1-202 | 202 | (B:1-202) Arginine biosynthesis bifunctional prote | 2e-58 | |
2v4i_B_1-200 | 200 | (B:1-200) Glutamate N-acetyltransferase 2 beta cha | 2e-54 | |
2v4i_A_ | 173 | (A:) Glutamate N-acetyltransferase 2 alpha chain; | 1e-51 | |
1vra_A_31-174 | 144 | (A:31-174) Arginine biosynthesis bifunctional prot | 6e-38 | |
1vz6_A_262-380 | 119 | (A:262-380) Ornithine acetyl-transferase; clavulan | 7e-30 | |
1vra_A_1-30_175-208 | 64 | (A:1-30,A:175-208) Arginine biosynthesis bifunctio | 3e-07 |
>1vz6_A (A:1-261) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus}Length = 261 | Back alignment and structure |
---|
Score = 278 bits (713), Expect = 7e-76 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 14/267 (5%) Query: 22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARA 81 +G + A +G+ GRDD ++ PA+V+ VFTRS V C+ ++ G AR Sbjct: 9 PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARG 68 Query: 82 LIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLS 141 ++V + AN TG G + R + +AV+ + E E+ +ASTG+IG + L Sbjct: 69 VVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLK 128 Query: 142 KMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLA 201 + A + + +A+A+MTTD K + T+ G+AKG GM+ PDMAT L Sbjct: 129 TLEWPAGEGGFDRAARAIMTTDTRPKEVR----VSVGGATLVGIAKGVGMLEPDMATLLT 184 Query: 202 FVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSD 261 F TD + PA + + +FN++++D DTSTSDT +LFA G + Sbjct: 185 FFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGL----------AGE 234 Query: 262 KRLSLFRPALFDLLKDLALQVVCDGEG 288 F AL L + DGEG Sbjct: 235 VDAGEFEEALHTAALALVKDIASDGEG 261 |
>1vra_B (B:1-202) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 202 | Back alignment and structure |
---|
>2v4i_B (B:1-200) Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B*Length = 200 | Back alignment and structure |
---|
>2v4i_A (A:) Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A*Length = 173 | Back alignment and structure |
---|
>1vra_A (A:31-174) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 144 | Back alignment and structure |
---|
>1vz6_A (A:262-380) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus}Length = 119 | Back alignment and structure |
---|
>1vra_A (A:1-30,A:175-208) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 64 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 416 | bifunctional ornithine acetyltransferase/N-acetylglutam | ||
1vz6_A_1-261 | 261 | Ornithine acetyl-transferase; clavulanic acid, N-a | 100.0 | |
1vra_B_1-202 | 202 | Arginine biosynthesis bifunctional protein ARGJ; 1 | 100.0 | |
2v4i_B_1-200 | 200 | Glutamate N-acetyltransferase 2 beta chain; cytopl | 100.0 | |
2v4i_A_ | 173 | Glutamate N-acetyltransferase 2 alpha chain; cytop | 100.0 | |
1vra_A_31-174 | 144 | Arginine biosynthesis bifunctional protein ARGJ; 1 | 100.0 | |
1vz6_A_262-380 | 119 | Ornithine acetyl-transferase; clavulanic acid, N-a | 100.0 | |
1vra_A_1-30_175-208 | 64 | Arginine biosynthesis bifunctional protein ARGJ; 1 | 99.32 | |
1b65_A_70-101_178-375 | 230 | DMPA, protein (aminopeptidase); hydrolase, peptide | 96.5 | |
2drh_A_ | 361 | PH0078 protein, 361AA long hypothetical D-aminopep | 93.12 |
>1vz6_A (A:1-261) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=725.69 Aligned_cols=256 Identities=34% Similarity=0.482 Sum_probs=248.1 Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH Q ss_conf 78747479999980310188946999994899869998325778534348888872358802999937872234147989 Q gi|254780326|r 19 LLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGR 98 (416) Q Consensus 19 l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~ 98 (416) +..++||++++++||||+++|+||+||+++.||++|||||||+|+||||+|||++++++++|+|||||||||||||++|+ T Consensus 6 v~~P~Gf~~~g~~aGiK~~~r~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~~G~ 85 (261) T 1vz6_A 6 PKTPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGE 85 (261) T ss_dssp --CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHH T ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH T ss_conf 89998489999995355699986899996899669999725875203639999875068840899943874434537799 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCC Q ss_conf 99999999998764987330887114310224320222210012223458322688887643156575224668875696 Q gi|254780326|r 99 DTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGI 178 (416) Q Consensus 99 ~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~ 178 (416) +|+++|++.+|+.|+|++++||++||||||+|||||+|+.+||++..+++.++|++||+||||||||||.+.+ +|+ T Consensus 86 ~da~~~~~~~A~~l~~~~~~Vl~~STGvIG~~lp~dki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~i----~g~ 161 (261) T 1vz6_A 86 ENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRV----SVG 161 (261) T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEE----EET T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE----EEC T ss_conf 9999999764233243763155402301211464124444333112455753577765675067531037899----613 Q ss_pred EEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCC Q ss_conf 28999985020002434522588999656439999999999860055541431676564422899632653467777688 Q gi|254780326|r 179 RVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITD 258 (416) Q Consensus 179 ~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~ 258 (416) +++|+|||||||||||||||||+||+|||.|+++.||++|++++++|||+|||||||||||||++||||+++ T Consensus 162 ~~~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~~v~~SFN~ItVDGDtSTNDtvlllAnG~a~-------- 233 (261) T 1vz6_A 162 GATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG-------- 233 (261) T ss_dssp TEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE-------- T ss_pred CCEEEEEEECCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCC-------- T ss_conf 743788961054205431000789998235676889999998641450006535888877579999548755-------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 877779988887889999999986226300 Q gi|254780326|r 259 VSDKRLSLFRPALFDLLKDLALQVVCDGEG 288 (416) Q Consensus 259 ~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEG 288 (416) .+++.+|+++|.+||++||+|||||||| T Consensus 234 --~~~~~~f~~aL~~v~~~LAk~Iv~DGEG 261 (261) T 1vz6_A 234 --EVDAGEFEEALHTAALALVKDIASDGEG 261 (261) T ss_dssp --ECCHHHHHHHHHHHHHHHHHHHHHTCTT T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf --2108899999999999999998736544 |
>1vra_B (B:1-202) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} | Back alignment and structure |
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>2v4i_B (B:1-200) Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* | Back alignment and structure |
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>2v4i_A (A:) Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* | Back alignment and structure |
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>1vra_A (A:31-174) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} | Back alignment and structure |
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>1vz6_A (A:262-380) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} | Back alignment and structure |
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>1vra_A (A:1-30,A:175-208) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} | Back alignment and structure |
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>1b65_A (A:70-101,A:178-375) DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} | Back alignment and structure |
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>2drh_A (A:) PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} | Back alignment and structure |
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