254780326

254780326

bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein

GeneID in NCBI database:8209311Locus tag:CLIBASIA_01055
Protein GI in NCBI database:254780326Protein Accession:YP_003064739.1
Gene range:-(218787, 220037)Protein Length:416aa
Gene description:bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
COG prediction:[E] N-acetylglutamate synthase (N-acetylornithine aminotransferase)
KEGG prediction:argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
SEED prediction:Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Pathway involved in KEGG:Arginine and proline metabolism [PATH:las00330]
Subsystem involved in SEED:Arginine Biosynthesis extended;
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPRED3 TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
cccccccEEcccccccccccccccEEEEEEEEEEEcccccEEEEEEEccccEEEEEEcccccccccHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccHHHEEEEEcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHccccHHHHHccccccccccEEEEEcccccccccccEEEEEEccEEEEccccccccccHHHHHHHHccccEEEEEEEccccccEEEEEccccHHHHHHcccccc
ccccHcccccccccccccccccccEEEHEHHccccccccccEEEEEEccccEEEEEEEccccccccEEEEHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHccccHHHEEEEccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccccccccEEEEEccEEEEccccccccccHHHHHHHHccccEEEEEEEccccccEEEEEccccHHEEEEcccccc
mlpisclpfmlqshvspvllpikGVRLSAAALGikyvgrddvflmvfdnpasvagvftrsscpsapvdfckgnlsHGIARALIVNSGianaftgkrgRDTVRFIAKAVSElipckeeeVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLakgagmiapdmATTLAFVVTDINISPAVLQNILSegaeysfnsitvdgdtstsdTLLLFATGtvlgnfapitdvsdkrlslFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGksgvlvdrdrlsvwfgdvrianngepeinfsQESVRSIVKKkcvpitvdlqigngihtvwtcdfskeyIHFNSNVQS
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGianaftgkrgrDTVRFIAKAvselipckeEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKvavrtvdidgirVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDvrianngepeinfsqesVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
***************SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQ*
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
*********MLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSN*Q*
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HHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxhhhhhhhhhhhhhhhhhhhhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
MLPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
315122249415 bifunctional ornithine acetyltransferase/N-acetylglutam 1 0.0
222087316413 glutamate N-acetyltransferase/amino-acid N-acetyltransf 1 1e-136
241206515413 bifunctional ornithine acetyltransferase/N-acetylglutam 1 1e-134
116254032413 bifunctional ornithine acetyltransferase/N-acetylglutam 1 1e-134
222149928413 bifunctional ornithine acetyltransferase/N-acetylglutam 1 1e-134
209551114413 bifunctional ornithine acetyltransferase/N-acetylglutam 1 1e-133
327193396413 glutamate N-acetyltransferase/amino-acid N-acetyltransf 1 1e-132
190893604413 glutamate N-acetyltransferase/amino-acid N-acetyltransf 1 1e-131
150397714413 bifunctional ornithine acetyltransferase/N-acetylglutam 1 1e-130
332716316413 amino-acid N-acetyltransferase / glutamate N-acetyltran 1 1e-130
>gi|315122249|ref|YP_004062738.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 415 Back     alignment and organism information
 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/415 (76%), Positives = 361/415 (86%)

Query: 2   LPISCLPFMLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSS 61
           +PIS    M +S V+PV LPIKGVRLS A+LGIKYVGRDDVFLM+FD PASVAGVFTRS 
Sbjct: 1   MPISSFSLMSRSRVTPVPLPIKGVRLSTASLGIKYVGRDDVFLMLFDKPASVAGVFTRSR 60

Query: 62  CPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYV 121
           CPSAPVDFC+ NL HGIARAL+VNSG ANAFTGKRGRD V FIA+++S+LI C+E+EVYV
Sbjct: 61  CPSAPVDFCRTNLPHGIARALVVNSGNANAFTGKRGRDAVHFIAQSLSDLISCQEDEVYV 120

Query: 122 ASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT 181
           ASTGIIGEFLD+  FDGV  K+L +ATDDAWLDSAKAMMTTD YAK AVRTV+IDG++VT
Sbjct: 121 ASTGIIGEFLDIGKFDGVFDKLLHNATDDAWLDSAKAMMTTDSYAKTAVRTVNIDGVKVT 180

Query: 182 INGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTL 241
           ING+AKGAGMIAPDMATTLAFVVTDI+IS  VLQ +LSEG E+SFNSITVD DTSTSDTL
Sbjct: 181 INGMAKGAGMIAPDMATTLAFVVTDIDISSPVLQILLSEGVEHSFNSITVDSDTSTSDTL 240

Query: 242 LLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAA 301
           +LF+TGTV  N  PIT + D+RLS FRP LFD+LKDLALQVVCDGEGASK+LEVTVKGA 
Sbjct: 241 MLFSTGTVSENVPPITSIDDQRLSTFRPVLFDILKDLALQVVCDGEGASKILEVTVKGAE 300

Query: 302 DCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIAN 361
           +  SAK+VA SIANSPLVKTAFAS S GWWGRIVMA+GKSG  VDRD +SVWF ++RIA 
Sbjct: 301 NATSAKQVAFSIANSPLVKTAFASGSIGWWGRIVMAIGKSGAFVDRDSISVWFRNIRIAT 360

Query: 362 NGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416
           NGEPEINFSQE V SI+K++C+PI VDL IG+G+HTVWTCDFS EY+ FNSN QS
Sbjct: 361 NGEPEINFSQEDVHSIMKEECIPIVVDLGIGDGVHTVWTCDFSGEYVQFNSNCQS 415



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222087316|ref|YP_002545853.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase protein [Agrobacterium radiobacter K84] Length = 413 Back     alignment and organism information
>gi|241206515|ref|YP_002977611.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 413 Back     alignment and organism information
>gi|116254032|ref|YP_769870.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 413 Back     alignment and organism information
>gi|222149928|ref|YP_002550885.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Agrobacterium vitis S4] Length = 413 Back     alignment and organism information
>gi|209551114|ref|YP_002283031.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 413 Back     alignment and organism information
>gi|327193396|gb|EGE60296.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase protein [Rhizobium etli CNPAF512] Length = 413 Back     alignment and organism information
>gi|190893604|ref|YP_001980146.1| glutamate N-acetyltransferase/amino-acid N-acetyltransferase [Rhizobium etli CIAT 652] Length = 413 Back     alignment and organism information
>gi|150397714|ref|YP_001328181.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase [Sinorhizobium medicae WSM419] Length = 413 Back     alignment and organism information
>gi|332716316|ref|YP_004443782.1| amino-acid N-acetyltransferase / glutamate N-acetyltransferase [Agrobacterium sp. H13-3] Length = 413 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
PRK05388395 PRK05388, argJ, bifunctional ornithine acetyltransferas 1e-144
cd02152390 cd02152, OAT, Ornithine acetyltransferase (OAT) family; 1e-124
COG1364404 COG1364, ArgJ, N-acetylglutamate synthase (N-acetylorni 1e-120
TIGR00120404 TIGR00120, ArgJ, glutamate N-acetyltransferase/amino-ac 2e-81
KOG2786431 KOG2786, KOG2786, KOG2786, Putative glutamate/ornithine 1e-62
pfam01960387 pfam01960, ArgJ, ArgJ family 1e-137
cd00123286 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of L- 9e-08
>gnl|CDD|180051 PRK05388, argJ, bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated Back     alignment and domain information
>gnl|CDD|73147 cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ Back     alignment and domain information
>gnl|CDD|31555 COG1364, ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|161718 TIGR00120, ArgJ, glutamate N-acetyltransferase/amino-acid acetyltransferase Back     alignment and domain information
>gnl|CDD|37997 KOG2786, KOG2786, KOG2786, Putative glutamate/ornithine acetyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|145242 pfam01960, ArgJ, ArgJ family Back     alignment and domain information
>gnl|CDD|73146 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 416 bifunctional ornithine acetyltransferase/N-acetylglutam
PRK05388404 argJ bifunctional ornithine acetyltransferase/N-acetylg 100.0
pfam01960387 ArgJ ArgJ family. Members of the ArgJ family catalyse t 100.0
cd02152390 OAT Ornithine acetyltransferase (OAT) family; also refe 100.0
COG1364404 ArgJ N-acetylglutamate synthase (N-acetylornithine amin 100.0
KOG2786431 consensus 100.0
TIGR00120430 ArgJ arginine biosynthesis bifunctional protein ArgJ; I 100.0
cd00123286 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopepti 100.0
cd02253339 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) famil 95.59
pfam03576323 Peptidase_S58 Peptidase family S58. 92.84
COG3191348 DmpA L-aminopeptidase/D-esterase [Amino acid transport 94.5
>PRK05388 argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated Back     alignment and domain information
>pfam01960 ArgJ ArgJ family Back     alignment and domain information
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ Back     alignment and domain information
>COG1364 ArgJ N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2786 consensus Back     alignment and domain information
>TIGR00120 ArgJ arginine biosynthesis bifunctional protein ArgJ; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2 Back     alignment and domain information
>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins Back     alignment and domain information
>cd02253 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates Back     alignment and domain information
>pfam03576 Peptidase_S58 Peptidase family S58 Back     alignment and domain information
>COG3191 DmpA L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
1vz6_A393 Ornithine Acetyltransferase (Orf6 Gene Product- Cla 3e-82
1vz8_A393 Ornithine Acetyltransferase (Orf6 Gene Product- Cla 6e-79
1vra_B215 Crystal Structure Of Arginine Biosynthesis Bifuncti 3e-48
2vzk_B213 Structure Of The Acyl-Enzyme Complex Of An N-Termin 4e-43
2vzk_D213 Structure Of The Acyl-Enzyme Complex Of An N-Termin 7e-43
2w4n_B213 Structure Of An N-Terminal Nucleophile (Ntn) Hydrol 2e-42
3it4_B205 The Crystal Structure Of Ornithine Acetyltransferas 1e-35
1vra_A208 Crystal Structure Of Arginine Biosynthesis Bifuncti 2e-32
3it4_A199 The Crystal Structure Of Ornithine Acetyltransferas 3e-32
2vzk_A173 Structure Of The Acyl-Enzyme Complex Of An N-Termin 8e-29
gi|55670479|pdb|1VZ6|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product- Clavulanic Acid Biosynthesis) From Streptomyces Clavuligerus Length = 393 Back     alignment and structure 
 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 137/409 (33%), Positives = 210/409 (51%), Gaps = 22/409 (5%)

Query: 13  SHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKG 72
           S  +P     +G  +  A +G+   GRDD  ++    PA+V+ VFTRS      V  C+ 
Sbjct: 2   SDSTPKTP--RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCRE 59

Query: 73  NLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLD 132
            ++ G AR ++V +  AN  TG  G +  R + +AV+  +   E E+ +ASTG+IG    
Sbjct: 60  AVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYP 119

Query: 133 VALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMI 192
           +      L  +   A +  +  +A+A+MTTD   K    +V       T+ G+AKG GM+
Sbjct: 120 MESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSV----GGATLVGIAKGVGML 175

Query: 193 APDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGN 252
            PDMAT L F  TD  + PA    +     + +FN++++D DTSTSDT +LFA G     
Sbjct: 176 EPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLA--- 232

Query: 253 FAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALS 312
                   +     F  AL      L   +  DGEGA+KL+EV V GA D A AK+V  +
Sbjct: 233 -------GEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKT 285

Query: 313 IANSPLVKTAFASESFGWWGRIVMAVGKS--GVLVDRDRLSVWFGDVRIA---NNGEPEI 367
           + NSPLVKTA        WGR+ MA+GK      +D++R+++ FG+V +      G+   
Sbjct: 286 VVNSPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQAD 344

Query: 368 NFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS 416
           +  + +V   ++   V I +DL I +G  TV+ CD ++ Y+  NS   +
Sbjct: 345 DALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSEYTT 393
>gi|55670485|pdb|1VZ8|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product- Clavulanic Acid Biosynthesis) From Streptomyces Clavuligerus (Semet Structure) Length = 393 Back     alignment and structure
>gi|66360302|pdb|1VRA|B Chain B, Crystal Structure Of Arginine Biosynthesis Bifunctional Protein Argj (10175521) From Bacillus Halodurans At 2.00 A Resolution Length = 215 Back     alignment and structure
>gi|203282331|pdb|2VZK|B Chain B, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 213 Back     alignment and structure
>gi|203282333|pdb|2VZK|D Chain D, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 213 Back     alignment and structure
>gi|281500619|pdb|2W4N|B Chain B, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2, In Complex With Glutamate Length = 213 Back     alignment and structure
>gi|290560238|pdb|3IT4|B Chain B, The Crystal Structure Of Ornithine Acetyltransferase From Mycobacterium Tuberculosis (Rv1653) At 1.7 A Length = 205 Back     alignment and structure
>gi|66360301|pdb|1VRA|A Chain A, Crystal Structure Of Arginine Biosynthesis Bifunctional Protein Argj (10175521) From Bacillus Halodurans At 2.00 A Resolution Length = 208 Back     alignment and structure
>gi|290560237|pdb|3IT4|A Chain A, The Crystal Structure Of Ornithine Acetyltransferase From Mycobacterium Tuberculosis (Rv1653) At 1.7 A Length = 199 Back     alignment and structure
>gi|203282330|pdb|2VZK|A Chain A, Structure Of The Acyl-Enzyme Complex Of An N-Terminal Nucleophile (Ntn) Hydrolase, Oat2 Length = 173 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
1vz6_A393 Ornithine acetyl-transferase; clavulanic acid, N-acetyl 1e-75
3it4_B205 Arginine biosynthesis bifunctional protein ARGJ beta ch 3e-50
1vra_B215 Arginine biosynthesis bifunctional protein ARGJ; 101755 3e-44
2v4i_B213 Glutamate N-acetyltransferase 2 beta chain; cytoplasm, 4e-40
1vra_A208 Arginine biosynthesis bifunctional protein ARGJ; 101755 1e-45
3it4_A199 Arginine biosynthesis bifunctional protein ARGJ alpha c 9e-41
2v4i_A173 Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, 2e-37
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A Length = 393 Back     alignment and structure
 Score =  278 bits (713), Expect = 1e-75
 Identities = 137/402 (34%), Positives = 208/402 (51%), Gaps = 21/402 (5%)

Query: 16  SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLS 75
           S    P +G  +  A +G+   GRDD  ++    PA+V+ VFTRS      V  C+  ++
Sbjct: 4   STPKTP-RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVA 62

Query: 76  HGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVAL 135
            G AR ++V +  AN  TG  G +  R + +AV+  +   E E+ +ASTG+IG    +  
Sbjct: 63  DGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMES 122

Query: 136 FDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPD 195
               L  +   A +  +  +A+A+MTTD       + V +     T+ G+AKG GM+ PD
Sbjct: 123 IREHLKTLEWPAGEGGFDRAARAIMTTDTR----PKEVRVSVGGATLVGIAKGVGMLEPD 178

Query: 196 MATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP 255
           MAT L F  TD  + PA    +     + +FN++++D DTSTSDT +LFA G      A 
Sbjct: 179 MATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAG 238

Query: 256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIAN 315
                      F  AL      L   +  DGEGA+KL+EV V GA D A AK+V  ++ N
Sbjct: 239 E----------FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVN 288

Query: 316 SPLVKTAFASESFGWWGRIVMAVGKS--GVLVDRDRLSVWFGDVRIA---NNGEPEINFS 370
           SPLVKTA        WGR+ MA+GK      +D++R+++ FG+V +      G+   +  
Sbjct: 289 SPLVKTAVHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDAL 347

Query: 371 QESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
           + +V   ++   V I +DL I +G  TV+ CD ++ Y+  NS
Sbjct: 348 RAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 389
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B Length = 205 Back     alignment and structure
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Length = 215 Back     alignment and structure
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* Length = 213 Back     alignment and structure
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Length = 208 Back     alignment and structure
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A Length = 199 Back     alignment and structure
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* Length = 173 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
1vz6_A393 Ornithine acetyl-transferase; clavulanic acid, N-acetyl 100.0
1vra_B215 Arginine biosynthesis bifunctional protein ARGJ; 101755 100.0
3it4_B205 Arginine biosynthesis bifunctional protein ARGJ beta ch 100.0
2v4i_B213 Glutamate N-acetyltransferase 2 beta chain; cytoplasm, 100.0
1vra_A208 Arginine biosynthesis bifunctional protein ARGJ; 101755 100.0
2v4i_A173 Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, 100.0
3it4_A199 Arginine biosynthesis bifunctional protein ARGJ alpha c 100.0
1b65_A375 DMPA, protein (aminopeptidase); hydrolase, peptide degr 92.87
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A Back     alignment and structure
Probab=100.00  E-value=0  Score=1109.00  Aligned_cols=384  Identities=35%  Similarity=0.538  Sum_probs=366.9

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCH
Q ss_conf             89878747479999980310188946999994899869998325778534348888872358802999937872234147
Q gi|254780326|r   16 SPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGK   95 (416)
Q Consensus        16 ~p~l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~   95 (416)
                      .|.+|  +||++++++||||+++|+||+||+++.||++|||||+|+|+||||+|||++++++++|+|||||||||||||+
T Consensus         5 ~~~~P--~Gf~~~~~~aGiK~~gr~Dlali~s~~p~~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~   82 (393)
T 1vz6_A            5 TPKTP--RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGL   82 (393)
T ss_dssp             ---CC--TTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHH
T ss_pred             CCCCC--CCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf             98999--8679999994245799985899996899769999625875305849989975048845999960742155578


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             98999999999998764987330887114310224320222210012223458322688887643156575224668875
Q gi|254780326|r   96 RGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDI  175 (416)
Q Consensus        96 ~G~~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i  175 (416)
                      +|++|+++|++.+|+.|+|++++||++||||||+||||++|+++||++..++++++|.+||+||||||||||...    +
T Consensus        83 ~G~~~a~~~~~~~a~~l~~~~~~Vlv~STGVIG~~Lp~~~i~~~i~~~~~~l~~~~~~~aA~AImTTDt~pK~~~----~  158 (393)
T 1vz6_A           83 EGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----V  158 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEE----E
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHEEEECCCHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEE----E
T ss_conf             899999999999999849994037884030213658678999987654304586179999988856785057899----9


Q ss_pred             CCCEEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             69628999985020002434522588999656439999999999860055541431676564422899632653467777
Q gi|254780326|r  176 DGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAP  255 (416)
Q Consensus       176 ~g~~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~  255 (416)
                      +++.++|.|||||||||||||||||+||||||+|+++.||++|+++|++|||||||||||||||||++||||+++     
T Consensus       159 ~~~~~~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llAnG~~~-----  233 (393)
T 1vz6_A          159 SVGGATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG-----  233 (393)
T ss_dssp             EETTEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE-----
T ss_pred             EECCCEEEEEEECCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCC-----
T ss_conf             610437999973253458753114788997466798999999998776123637756887777589998338877-----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf             68887777998888788999999998622630021379999824899999999987735715665555067886244532
Q gi|254780326|r  256 ITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIV  335 (416)
Q Consensus       256 i~~~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~  335 (416)
                           ++++.+|+++|.++|++||+|||||||||||||+|+|+||+|+.+|++|||+|+||||||||+||+||| ||||+
T Consensus       234 -----~~~~~~f~~aL~~v~~~LA~~Iv~DGEGATKli~v~V~gA~s~~~A~~vA~sIa~S~LVKTAi~G~DpN-WGRI~  307 (393)
T 1vz6_A          234 -----EVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVA  307 (393)
T ss_dssp             -----ECCHHHHHHHHHHHHHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC-HHHHH
T ss_conf             -----532899999999999999999752622043379999915899999999999975488899998376998-79999


Q ss_pred             HHHCCCC--CCCCHHHEEEEECCEEEEECCCC---CCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEEC
Q ss_conf             2202457--76582334999899998717731---878899999986254877999972689812899954587546001
Q gi|254780326|r  336 MAVGKSG--VLVDRDRLSVWFGDVRIANNGEP---EINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHF  410 (416)
Q Consensus       336 aAiG~sg--~~~d~~~i~i~ig~~~v~~~G~~---~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~i  410 (416)
                      ||+||++  ++|||++++|+||+++|+++|.+   ..+|+|++++++|+++||.|.||||.|++++++||||||||||+|
T Consensus       308 ~AiG~sg~~~~~d~~~v~i~~g~~~v~~~g~~~~~~~~~~e~~~~~~m~~~ei~I~vdL~~G~~~at~wtcDLt~~YV~I  387 (393)
T 1vz6_A          308 MAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRL  387 (393)
T ss_dssp             HHHHTCTTCTTCCTTTCEEEETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHH
T ss_pred             HHHCCCCCCCCCCHHEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCHHHHEE
T ss_conf             77412456677771207999899999962677887735669999987567918999997888821899927698668348


Q ss_pred             CCCCCC
Q ss_conf             146579
Q gi|254780326|r  411 NSNVQS  416 (416)
Q Consensus       411 Na~Yrs  416 (416)
                      ||||||
T Consensus       388 Na~YrT  393 (393)
T 1vz6_A          388 NSEYTT  393 (393)
T ss_dssp             HHC---
T ss_pred             CCCCCC
T ss_conf             775589
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Back     alignment and structure
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B Back     alignment and structure
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* 2w4n_B* Back     alignment and structure
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Back     alignment and structure
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* Back     alignment and structure
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A Back     alignment and structure
>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1 Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 416 bifunctional ornithine acetyltransferase/N-acetylglutam
d1vz6a_383 d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithi 4e-79
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} Length = 383 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DmpA/ArgJ-like
superfamily: DmpA/ArgJ-like
family: ArgJ-like
domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)
species: Streptomyces clavuligerus [TaxId: 1901]

 Score =  288 bits (739), Expect = 4e-79
 Identities = 135/395 (34%), Positives = 205/395 (51%), Gaps = 20/395 (5%)

Query: 23  KGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARAL 82
           +G  +  A +G+   GRDD  ++    PA+V+ VFTRS      V  C+  ++ G AR +
Sbjct: 3   RGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGV 62

Query: 83  IVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSK 142
           +V +  AN  TG  G +  R + +AV+  +   E E+ +ASTG+IG    +      L  
Sbjct: 63  VVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKT 122

Query: 143 MLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAF 202
           +   A +  +  +A+A+MTTD       + V +     T+ G+AKG GM+ PDMAT L F
Sbjct: 123 LEWPAGEGGFDRAARAIMTTDTR----PKEVRVSVGGATLVGIAKGVGMLEPDMATLLTF 178

Query: 203 VVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDK 262
             TD  + PA    +     + +FN++++D DTSTSDT +LFA G      A        
Sbjct: 179 FATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGE------ 232

Query: 263 RLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTA 322
               F  AL      L   +  DGEGA+KL+EV V GA D A AK+V  ++ NSPLVKTA
Sbjct: 233 ----FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTA 288

Query: 323 FASESFGWWGRIVMAVGKSGVLV--DRDRLSVWFGDVRIA---NNGEPEINFSQESVRSI 377
                   WGR+ MA+GK       D++R+++ FG+V +      G+   +  + +V   
Sbjct: 289 VHGCDPN-WGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEH 347

Query: 378 VKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNS 412
           ++   V I +DL I +G  TV+ CD ++ Y+  NS
Sbjct: 348 LRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNS 382

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
d1vz6a_383 Glutamate N-acetyltransferase 2 (ornithine acetyltransf 100.0
d1b65a_367 L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobact 93.21
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DmpA/ArgJ-like
superfamily: DmpA/ArgJ-like
family: ArgJ-like
domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=0  Score=1077.67  Aligned_cols=377  Identities=35%  Similarity=0.540  Sum_probs=361.8

Q ss_pred             CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             47479999980310188946999994899869998325778534348888872358802999937872234147989999
Q gi|254780326|r   22 IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTV  101 (416)
Q Consensus        22 i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~~~a  101 (416)
                      ++||++++++||||+++|+||+||++++||++|||||+|+|+||||+|||++++++++|+|||||||||||||++|++++
T Consensus         2 PkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~a   81 (383)
T d1vz6a_           2 PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENA   81 (383)
T ss_dssp             CTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHHH
T ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHH
T ss_conf             98599999995366799986899995799769999736875301519989875268842999953741111158889999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE
Q ss_conf             99999998764987330887114310224320222210012223458322688887643156575224668875696289
Q gi|254780326|r  102 RFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVT  181 (416)
Q Consensus       102 ~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~~v~  181 (416)
                      ++|++.+|+.|+|++++||++|||||||+||+++|+++||++..++++++|++||+||||||||||.+.    ++++.++
T Consensus        82 ~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~----i~~~~~~  157 (383)
T d1vz6a_          82 REVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVR----VSVGGAT  157 (383)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEE----EEETTEE
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEE----EEECCCE
T ss_conf             999987655304575314551242010146411334433211223234336654445306642025899----9720424


Q ss_pred             EEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99985020002434522588999656439999999999860055541431676564422899632653467777688877
Q gi|254780326|r  182 INGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSD  261 (416)
Q Consensus       182 i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~~~~  261 (416)
                      |.|||||||||||||||||+||||||.|+++.||++|++++++|||+|||||||||||||++||||.++.          
T Consensus       158 i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~----------  227 (383)
T d1vz6a_         158 LVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGE----------  227 (383)
T ss_dssp             EEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEE----------
T ss_pred             EEEEEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCC----------
T ss_conf             7778601432055545247899961556768899999986414500065458888775899984587532----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf             77998888788999999998622630021379999824899999999987735715665555067886244532220245
Q gi|254780326|r  262 KRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKS  341 (416)
Q Consensus       262 ~~~~~f~~aL~~v~~~LA~~Iv~DGEGatk~i~v~V~gA~~~~~A~~ia~sIa~S~LvKtA~~G~DpN~WGRI~aAiG~s  341 (416)
                      +++.+|+++|.++|++||++||||||||||||+|+|+||+|+++|+++||+|+||||||||+||+||| ||||+||+||+
T Consensus       228 ~~~~~f~~aL~~v~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpN-WGRI~aAiG~~  306 (383)
T d1vz6a_         228 VDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN-WGRVAMAIGKC  306 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC-HHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCC
T ss_conf             10787777788999999999863653322589999805899999999999975229999887345884-77777664235


Q ss_pred             C--CCCCHHHEEEEECCEEEEECCC---CCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHEECCCC
Q ss_conf             7--7658233499989999871773---1878899999986254877999972689812899954587546001146
Q gi|254780326|r  342 G--VLVDRDRLSVWFGDVRIANNGE---PEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSN  413 (416)
Q Consensus       342 g--~~~d~~~i~i~ig~~~v~~~G~---~~~~~~e~~~~~~~~~~~i~i~idLg~G~~~~t~~tcDLt~~YV~iNa~  413 (416)
                      +  ++|||++++|++|+++++++|.   ...+|+|++++++|+++||+|.||||.|++++++||||||||||+||||
T Consensus       307 ~~~~~~d~~~i~i~~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad  383 (383)
T d1vz6a_         307 SDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE  383 (383)
T ss_dssp             TTCTTCCTTTCEEEETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred             CCCCCCCHHHEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf             67766662425999899999963667887733559999987457848999997888922899907698322102689
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 416 bifunctional ornithine acetyltransferase/N-acetylg
1vz6_A_1-261261 (A:1-261) Ornithine acetyl-transferase; clavulanic 7e-76
1vra_B_1-202202 (B:1-202) Arginine biosynthesis bifunctional prote 2e-58
2v4i_B_1-200200 (B:1-200) Glutamate N-acetyltransferase 2 beta cha 2e-54
2v4i_A_173 (A:) Glutamate N-acetyltransferase 2 alpha chain; 1e-51
1vra_A_31-174144 (A:31-174) Arginine biosynthesis bifunctional prot 6e-38
1vz6_A_262-380119 (A:262-380) Ornithine acetyl-transferase; clavulan 7e-30
1vra_A_1-30_175-20864 (A:1-30,A:175-208) Arginine biosynthesis bifunctio 3e-07
>1vz6_A (A:1-261) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus}Length = 261 Back     alignment and structure
 Score =  278 bits (713), Expect = 7e-76
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 14/267 (5%)

Query: 22  IKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARA 81
            +G  +  A +G+   GRDD  ++    PA+V+ VFTRS      V  C+  ++ G AR 
Sbjct: 9   PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARG 68

Query: 82  LIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLS 141
           ++V +  AN  TG  G +  R + +AV+  +   E E+ +ASTG+IG    +      L 
Sbjct: 69  VVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLK 128

Query: 142 KMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLA 201
            +   A +  +  +A+A+MTTD   K       +     T+ G+AKG GM+ PDMAT L 
Sbjct: 129 TLEWPAGEGGFDRAARAIMTTDTRPKEVR----VSVGGATLVGIAKGVGMLEPDMATLLT 184

Query: 202 FVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSD 261
           F  TD  + PA    +     + +FN++++D DTSTSDT +LFA G             +
Sbjct: 185 FFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGL----------AGE 234

Query: 262 KRLSLFRPALFDLLKDLALQVVCDGEG 288
                F  AL      L   +  DGEG
Sbjct: 235 VDAGEFEEALHTAALALVKDIASDGEG 261
>1vra_B (B:1-202) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 202 Back     alignment and structure
>2v4i_B (B:1-200) Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B*Length = 200 Back     alignment and structure
>2v4i_A (A:) Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A*Length = 173 Back     alignment and structure
>1vra_A (A:31-174) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 144 Back     alignment and structure
>1vz6_A (A:262-380) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus}Length = 119 Back     alignment and structure
>1vra_A (A:1-30,A:175-208) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}Length = 64 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target416 bifunctional ornithine acetyltransferase/N-acetylglutam
1vz6_A_1-261261 Ornithine acetyl-transferase; clavulanic acid, N-a 100.0
1vra_B_1-202202 Arginine biosynthesis bifunctional protein ARGJ; 1 100.0
2v4i_B_1-200200 Glutamate N-acetyltransferase 2 beta chain; cytopl 100.0
2v4i_A_173 Glutamate N-acetyltransferase 2 alpha chain; cytop 100.0
1vra_A_31-174144 Arginine biosynthesis bifunctional protein ARGJ; 1 100.0
1vz6_A_262-380119 Ornithine acetyl-transferase; clavulanic acid, N-a 100.0
1vra_A_1-30_175-20864 Arginine biosynthesis bifunctional protein ARGJ; 1 99.32
1b65_A_70-101_178-375230 DMPA, protein (aminopeptidase); hydrolase, peptide 96.5
2drh_A_361 PH0078 protein, 361AA long hypothetical D-aminopep 93.12
>1vz6_A (A:1-261) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} Back     alignment and structure
Probab=100.00  E-value=0  Score=725.69  Aligned_cols=256  Identities=34%  Similarity=0.482  Sum_probs=248.1

Q ss_pred             CCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
Q ss_conf             78747479999980310188946999994899869998325778534348888872358802999937872234147989
Q gi|254780326|r   19 LLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGR   98 (416)
Q Consensus        19 l~~i~Gf~~~~~~aGiK~~~r~DL~li~~~~pa~~AgvFT~N~~~AAPV~~~k~~l~~~~~raivvNSGnANA~TG~~G~   98 (416)
                      +..++||++++++||||+++|+||+||+++.||++|||||||+|+||||+|||++++++++|+|||||||||||||++|+
T Consensus         6 v~~P~Gf~~~g~~aGiK~~~r~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~~~~ravvvNSGnANA~TG~~G~   85 (261)
T 1vz6_A            6 PKTPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGE   85 (261)
T ss_dssp             --CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHH
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf             89998489999995355699986899996899669999725875203639999875068840899943874434537799


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf             99999999998764987330887114310224320222210012223458322688887643156575224668875696
Q gi|254780326|r   99 DTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGI  178 (416)
Q Consensus        99 ~~a~~~~~~~a~~l~~~~~~Vl~~STGVIG~~Lp~~ki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~~~~~i~g~  178 (416)
                      +|+++|++.+|+.|+|++++||++||||||+|||||+|+.+||++..+++.++|++||+||||||||||.+.+    +|+
T Consensus        86 ~da~~~~~~~A~~l~~~~~~Vl~~STGvIG~~lp~dki~~~i~~l~~~l~~~~~~~aA~AImTTDt~pK~~~i----~g~  161 (261)
T 1vz6_A           86 ENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRV----SVG  161 (261)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEE----EET
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE----EEC
T ss_conf             9999999764233243763155402301211464124444333112455753577765675067531037899----613


Q ss_pred             EEEEEEEEECCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             28999985020002434522588999656439999999999860055541431676564422899632653467777688
Q gi|254780326|r  179 RVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITD  258 (416)
Q Consensus       179 ~v~i~GiaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~AnG~~~~~~~~i~~  258 (416)
                      +++|+|||||||||||||||||+||+|||.|+++.||++|++++++|||+|||||||||||||++||||+++        
T Consensus       162 ~~~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~~v~~SFN~ItVDGDtSTNDtvlllAnG~a~--------  233 (261)
T 1vz6_A          162 GATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAG--------  233 (261)
T ss_dssp             TEEEEEEEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEE--------
T ss_pred             CCEEEEEEECCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCC--------
T ss_conf             743788961054205431000789998235676889999998641450006535888877579999548755--------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             877779988887889999999986226300
Q gi|254780326|r  259 VSDKRLSLFRPALFDLLKDLALQVVCDGEG  288 (416)
Q Consensus       259 ~~~~~~~~f~~aL~~v~~~LA~~Iv~DGEG  288 (416)
                        .+++.+|+++|.+||++||+||||||||
T Consensus       234 --~~~~~~f~~aL~~v~~~LAk~Iv~DGEG  261 (261)
T 1vz6_A          234 --EVDAGEFEEALHTAALALVKDIASDGEG  261 (261)
T ss_dssp             --ECCHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             --2108899999999999999998736544
>1vra_B (B:1-202) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Back     alignment and structure
>2v4i_B (B:1-200) Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* Back     alignment and structure
>2v4i_A (A:) Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* Back     alignment and structure
>1vra_A (A:31-174) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Back     alignment and structure
>1vz6_A (A:262-380) Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} Back     alignment and structure
>1vra_A (A:1-30,A:175-208) Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Back     alignment and structure
>1b65_A (A:70-101,A:178-375) DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} Back     alignment and structure
>2drh_A (A:) PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} Back     alignment and structure