254780360

254780360

protoheme IX farnesyltransferase

GeneID in NCBI database:8209345Locus tag:CLIBASIA_01225
Protein GI in NCBI database:254780360Protein Accession:YP_003064773.1
Gene range:-(257275, 258192)Protein Length:305aa
Gene description:protoheme IX farnesyltransferase
COG prediction:[O] Polyprenyltransferase (cytochrome oxidase assembly factor)
KEGG prediction:protoheme IX farnesyltransferase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
SEED prediction:Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Pathway involved in KEGG:Oxidative phosphorylation [PATH:las00190]
Porphyrin and chlorophyll metabolism [PATH:las00860]
Subsystem involved in SEED:Biogenesis of cytochrome c oxidases
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM9 TM-Helix
TOPPRED6 TM-Helix
HMMTOP9 TM-Helix
MEMSAT9 TM-Helix
MEMSAT_SVM9 TM-Helix
PHOBIUS9 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
ccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
ccccHHHHHHHHHHccccHEEEEEEEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccEEEHEEcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcc
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMArtasrpiplgqispwEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWlkrftpqniviggiagaippmigwasvtgDVSIASLVMFLIIFLwtpphfwsLALLCkddyqkasipmlpnvvtdrtTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLckedkdirVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIViggiagaippmigWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
****VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
*YFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
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MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL
MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYFFSSFL

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target305 protoheme IX farnesyltransferase [Candidatus Liberibact
254780205310 prenyltransferase [Candidatus Liberibacter asiatic 2e-06
>gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Back     alignment
 Score = 45.1 bits (105), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 15/115 (13%)

Query: 55  GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN---- 110
           GA+   N   D DID  + RT SRP+P GQ + ++A V  V   + S V++ L  N    
Sbjct: 79  GAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVI 137

Query: 111 WVSATLLFMSIFCYVVIYTIWLKRF--TPQNIVIGGIAGAIPPMIGWASVTGDVS 163
            V   LLF+S+     +Y    KRF   PQ ++  G AG +   +GW ++    S
Sbjct: 138 CVGFALLFISL-----LYPF-SKRFILCPQVVLGIGFAGGV--FVGWGALHASFS 184

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target305 protoheme IX farnesyltransferase [Candidatus Liberibact
315122179309 protoheme IX farnesyltransferase [Candidatus Liberibact 1 1e-132
327192581316 protoheme IX farnesyltransferase protein [Rhizobium etl 1 8e-86
227821104318 protoheme IX farnesyltransferase [Sinorhizobium fredii 1 1e-85
86356600316 protoheme IX farnesyltransferase [Rhizobium etli CFN 42 1 3e-85
182639243316 RecName: Full=Protoheme IX farnesyltransferase; AltName 1 3e-85
307304236316 protoheme IX farnesyltransferase [Sinorhizobium melilot 1 3e-85
15964659350 protoheme IX farnesyltransferase [Sinorhizobium melilot 1 4e-85
110633100310 protoheme IX farnesyltransferase [Mesorhizobium sp. BNC 1 5e-85
222085120319 protoheme IX farnesyltransferase [Agrobacterium radioba 1 6e-85
209548210316 protoheme IX farnesyltransferase [Rhizobium leguminosar 1 9e-85
>gi|315122179|ref|YP_004062668.1| protoheme IX farnesyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 309 Back     alignment and organism information
 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/301 (77%), Positives = 267/301 (88%), Gaps = 1/301 (0%)

Query: 1   MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGAL 60
           M+F+  R+NFFI LLKPRVMSLA+YTA VGIVLA GHIS LK +ISIFAIAMGAGASGAL
Sbjct: 8   MHFEGLRINFFITLLKPRVMSLAVYTALVGIVLASGHISFLKGIISIFAIAMGAGASGAL 67

Query: 61  NMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMS 120
           NMYYD+DIDK+M RTASRPIP+G+I+PWEA V G+ LA+ SI IMGLAINW+SATLLF+S
Sbjct: 68  NMYYDSDIDKVMMRTASRPIPIGKIAPWEALVFGIFLAILSITIMGLAINWMSATLLFLS 127

Query: 121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPH 180
           IF Y++IYT+WLKR TPQNIVIGGIAGAIPPMIGW+SVTGD+SI  LVMFLIIFLWTPPH
Sbjct: 128 IFFYIIIYTVWLKRRTPQNIVIGGIAGAIPPMIGWSSVTGDISIEGLVMFLIIFLWTPPH 187

Query: 181 FWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240
           FWSLALL K+DY+ A +PMLPNV TDRTTK+HIL+YTVLTSIVG LPT+LGFAS+ YGII
Sbjct: 188 FWSLALLYKNDYEMAGVPMLPNVSTDRTTKIHILVYTVLTSIVGFLPTILGFASILYGII 247

Query: 241 VFFLGYHFTLWAWR-TFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERY 299
           VFFLG +F LWA R TFLC E++ I V KKLFL SI+YLF+LF+ILMVDHLI +KT+E Y
Sbjct: 248 VFFLGCNFVLWALRATFLCTEEQSIIVIKKLFLTSISYLFILFSILMVDHLIGIKTIEYY 307

Query: 300 F 300
           F
Sbjct: 308 F 308


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|327192581|gb|EGE59529.1| protoheme IX farnesyltransferase protein [Rhizobium etli CNPAF512] Length = 316 Back     alignment and organism information
>gi|227821104|ref|YP_002825074.1| protoheme IX farnesyltransferase [Sinorhizobium fredii NGR234] Length = 318 Back     alignment and organism information
>gi|86356600|ref|YP_468492.1| protoheme IX farnesyltransferase [Rhizobium etli CFN 42] Length = 316 Back     alignment and organism information
>gi|182639243|sp|Q92RG8|COXX_RHIME RecName: Full=Protoheme IX farnesyltransferase; AltName: Full=Heme B farnesyltransferase; AltName: Full=Heme O synthase Length = 316 Back     alignment and organism information
>gi|307304236|ref|ZP_07583988.1| protoheme IX farnesyltransferase [Sinorhizobium meliloti BL225C] Length = 316 Back     alignment and organism information
>gi|15964659|ref|NP_385012.1| protoheme IX farnesyltransferase [Sinorhizobium meliloti 1021] Length = 350 Back     alignment and organism information
>gi|110633100|ref|YP_673308.1| protoheme IX farnesyltransferase [Mesorhizobium sp. BNC1] Length = 310 Back     alignment and organism information
>gi|222085120|ref|YP_002543650.1| protoheme IX farnesyltransferase [Agrobacterium radiobacter K84] Length = 319 Back     alignment and organism information
>gi|209548210|ref|YP_002280127.1| protoheme IX farnesyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target305 protoheme IX farnesyltransferase [Candidatus Liberibact
PRK04375296 PRK04375, PRK04375, protoheme IX farnesyltransferase; P 6e-96
TIGR01473280 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase 1e-72
PRK13362306 PRK13362, PRK13362, protoheme IX farnesyltransferase; P 3e-65
KOG1380409 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [ 6e-34
PLN02776341 PLN02776, PLN02776, prenyltransferase 1e-28
pfam01040258 pfam01040, UbiA, UbiA prenyltransferase family 1e-16
COG0382289 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase 1e-13
PRK12884279 PRK12884, ubiA, prenyltransferase; Reviewed 4e-07
COG0109304 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidas 5e-74
PRK12869279 PRK12869, ubiA, protoheme IX farnesyltransferase; Revie 1e-43
TIGR01474281 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl tr 4e-11
PRK12878314 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase 5e-10
PRK12848282 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase 2e-09
PRK12886291 PRK12886, ubiA, prenyltransferase; Reviewed 6e-08
PRK12888284 PRK12888, ubiA, prenyltransferase; Reviewed 9e-08
KOG1381353 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polypre 3e-07
TIGR01475282 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyp 1e-05
PLN02809289 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransfe 4e-05
PRK13106300 PRK13106, ubiA, prenyltransferase; Reviewed 3e-04
PRK12874291 PRK12874, ubiA, prenyltransferase; Reviewed 0.004
PRK12847285 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase 2e-08
PRK12882276 PRK12882, ubiA, prenyltransferase; Reviewed 8e-07
PRK12883277 PRK12883, ubiA, prenyltransferase UbiA-like protein; Re 4e-05
COG1575303 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltra 0.001
PRK12870290 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase 3e-05
PRK12324295 PRK12324, PRK12324, phosphoribose diphosphate:decapreny 2e-04
PRK12392331 PRK12392, PRK12392, bacteriochlorophyll c synthase; Pro 0.001
>gnl|CDD|179840 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|162379 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase Back     alignment and domain information
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|36594 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|178375 PLN02776, PLN02776, prenyltransferase Back     alignment and domain information
>gnl|CDD|144580 pfam01040, UbiA, UbiA prenyltransferase family Back     alignment and domain information
>gnl|CDD|30731 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|30458 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|183803 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial Back     alignment and domain information
>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|171798 PRK12886, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|36595 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|162380 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase Back     alignment and domain information
>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase Back     alignment and domain information
>gnl|CDD|183862 PRK13106, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183806 PRK12874, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|183804 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183439 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 305 protoheme IX farnesyltransferase [Candidatus Liberibact
TIGR01473297 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: I 100.0
PRK13362306 protoheme IX farnesyltransferase; Provisional 100.0
PRK04375303 protoheme IX farnesyltransferase; Provisional 100.0
COG0109304 CyoE Polyprenyltransferase (cytochrome oxidase assembly 100.0
PRK12869278 ubiA prenyltransferase; Reviewed 100.0
PRK12886291 ubiA prenyltransferase; Reviewed 100.0
PRK12847284 ubiA prenyltransferase; Reviewed 100.0
PRK12870289 ubiA prenyltransferase; Reviewed 100.0
PRK12848282 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed 100.0
PRK12877283 consensus 100.0
TIGR01474291 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; I 100.0
PRK12878314 ubiA prenyltransferase; Reviewed 100.0
PRK12873297 ubiA prenyltransferase; Reviewed 100.0
PRK12894282 consensus 100.0
PRK12888313 ubiA prenyltransferase; Reviewed 100.0
PRK12874291 ubiA prenyltransferase; Reviewed 100.0
PRK12895286 ubiA prenyltransferase; Reviewed 100.0
PRK13106299 ubiA prenyltransferase; Reviewed 100.0
PRK12884281 ubiA prenyltransferase; Reviewed 100.0
PRK12882276 ubiA prenyltransferase; Reviewed 100.0
PRK12876299 ubiA prenyltransferase; Reviewed 100.0
TIGR01475301 ubiA_other 4-hydroxybenzoate polyprenyltransferase, put 100.0
PRK09573280 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; 100.0
KOG1380409 consensus 100.0
PRK13593283 consensus 100.0
PRK12871297 ubiA prenyltransferase; Reviewed 100.0
PRK12883275 ubiA prenyltransferase UbiA-like protein; Reviewed 100.0
COG0382289 UbiA 4-hydroxybenzoate polyprenyltransferase and relate 100.0
KOG1381353 consensus 100.0
PRK13594278 consensus 100.0
PRK06080300 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Valid 99.96
PRK13387317 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provi 99.92
PRK05951296 ubiA prenyltransferase; Reviewed 99.92
PRK13105291 ubiA prenyltransferase; Reviewed 99.89
PRK07419304 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provi 99.84
COG1575303 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [ 99.83
PRK13595298 ubiA prenyltransferase; Provisional 99.79
KOG4581359 consensus 98.92
TIGR02235293 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransf 98.52
PRK07566308 bacteriochlorophyll/chlorophyll a synthase; Reviewed 100.0
pfam01040258 UbiA UbiA prenyltransferase family. 100.0
TIGR01476295 chlor_syn_BchG bacteriochlorophyll/chlorophyll syntheta 100.0
TIGR02056306 ChlG chlorophyll synthase, ChlG; InterPro: IPR011799 Th 99.79
PRK12392331 bacteriochlorophyll c synthase; Provisional 99.97
PRK12887309 ubiA tocopherol phytyltransferase; Reviewed 99.96
PRK12324288 phosphoribose diphosphate:decaprenyl-phosphate phosphor 99.93
PRK12875281 ubiA prenyltransferase; Reviewed 99.79
PRK13592299 ubiA prenyltransferase; Provisional 99.08
TIGR00751286 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 91.57
PRK12872297 ubiA prenyltransferase; Reviewed 99.92
PRK08238481 hypothetical protein; Validated 99.91
PRK13591304 ubiA prenyltransferase; Provisional 98.08
COG4147529 DhlC Predicted symporter [General function prediction o 94.67
PRK13594278 consensus 94.55
PRK06080300 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Valid 94.28
PRK12884281 ubiA prenyltransferase; Reviewed 93.76
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369 This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A Back     alignment and domain information
>PRK13362 protoheme IX farnesyltransferase; Provisional Back     alignment and domain information
>PRK04375 protoheme IX farnesyltransferase; Provisional Back     alignment and domain information
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12869 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12886 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12847 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12870 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed Back     alignment and domain information
>PRK12877 consensus Back     alignment and domain information
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370 These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates Back     alignment and domain information
>PRK12878 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12873 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12894 consensus Back     alignment and domain information
>PRK12888 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12874 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12895 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK13106 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12884 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12882 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12876 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371 A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO Back     alignment and domain information
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed Back     alignment and domain information
>KOG1380 consensus Back     alignment and domain information
>PRK13593 consensus Back     alignment and domain information
>PRK12871 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed Back     alignment and domain information
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism] Back     alignment and domain information
>KOG1381 consensus Back     alignment and domain information
>PRK13594 consensus Back     alignment and domain information
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated Back     alignment and domain information
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional Back     alignment and domain information
>PRK05951 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK13105 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional Back     alignment and domain information
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK13595 ubiA prenyltransferase; Provisional Back     alignment and domain information
>KOG4581 consensus Back     alignment and domain information
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937 This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1) Back     alignment and domain information
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed Back     alignment and domain information
>pfam01040 UbiA UbiA prenyltransferase family Back     alignment and domain information
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase; InterPro: IPR006372 These are a subfamily of a large family of polyprenyltransferases that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase) Back     alignment and domain information
>TIGR02056 ChlG chlorophyll synthase, ChlG; InterPro: IPR011799 This entry represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG Back     alignment and domain information
>PRK12392 bacteriochlorophyll c synthase; Provisional Back     alignment and domain information
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed Back     alignment and domain information
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK12875 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK13592 ubiA prenyltransferase; Provisional Back     alignment and domain information
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro: IPR004657 This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis Back     alignment and domain information
>PRK12872 ubiA prenyltransferase; Reviewed Back     alignment and domain information
>PRK08238 hypothetical protein; Validated Back     alignment and domain information
>PRK13591 ubiA prenyltransferase; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK13594 consensus Back     alignment and domain information
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated Back     alignment and domain information
>PRK12884 ubiA prenyltransferase; Reviewed Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00