Conserved Domains in CDD Database
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value Target 108
flagellar hook-basal body protein FliE [Candidatus Libe
PRK00790 109
PRK00790, fliE, flagellar hook-basal body protein FliE;
1e-14 COG1677 105
COG1677, FliE, Flagellar hook-basal body protein [Cell
5e-05 PRK00732 102
PRK00732, fliE, flagellar hook-basal body protein FliE;
0.004 pfam02049 97
pfam02049, FliE, Flagellar hook-basal body complex prot
2e-07
>gnl|CDD|179126 PRK00790, fliE, flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Score = 73.2 bits (180), Expect = 1e-14
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91
+ SF+++L MA A+ ++ AE S+ A++GK RE VD +MQAE+ L ++A
Sbjct: 33 APAAPGASFASVLGQMAGDAVQTLKAAEATSIQAIKGKADTREVVDAVMQAEQALQTAVA 92
Query: 92 LRDKILSAVSEVSKMQI 108
+RDK++ A E+ +M I
Sbjct: 93 IRDKVVEAYLEILRMPI 109
>gnl|CDD|31863 COG1677, FliE, Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Back Show alignment and domain information
Score = 41.5 bits (97), Expect = 5e-05
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 28 NSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTS-MREAVDHIMQAERTL 86
+++++ + SF+ +L++ +KAE S A + G+ + + + + +A +L
Sbjct: 24 STSQKASENGASFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSL 83
Query: 87 NLSIALRDKILSAVSEVSKMQI 108
+I +R+K++SA E+ +MQI
Sbjct: 84 QTAIQVRNKLVSAYQEIMRMQI 105
>gnl|CDD|179101 PRK00732, fliE, flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Score = 35.1 bits (81), Expect = 0.004
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIA 91
G SF ALL+D + K++ + A GK ++ + V + + + ++ ++
Sbjct: 26 GGDKGGPSFGALLKDAMGSVLEAGRKSDAQTAAMASGKANLMDVVTAVAETDVAVSTLVS 85
Query: 92 LRDKILSAVSEVSKMQI 108
+RD+++ A E+ +M I
Sbjct: 86 VRDRVIQAYEEIMRMPI 102
>gnl|CDD|145299 pfam02049, FliE, Flagellar hook-basal body complex protein FliE
Back Show alignment and domain information
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 26 TQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAER 84
++ + SF+ +L+ +KA+ ++ A GK+ + E + + +A
Sbjct: 14 ASAASASAAAGGASFADVLKQALDKVNDLQQKADALAEAFATGKSVDLHEVMIAVQKASL 73
Query: 85 TLNLSIALRDKILSAVSEVSKMQI 108
+ ++ +R+K++ A E+ +MQI
Sbjct: 74 SFQATVQVRNKLVEAYQEIMRMQI 97
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability Target
108
flagellar hook-basal body protein FliE [Candidatus Libe
PRK00253 105
fliE flagellar hook-basal body protein FliE; Reviewed
99.96 PRK00732 103
fliE flagellar hook-basal body protein FliE; Reviewed
99.95 PRK03907 100
fliE flagellar hook-basal body protein FliE; Reviewed
99.95 pfam02049 97
FliE Flagellar hook-basal body complex protein FliE.
99.93 PRK00790 99
fliE flagellar hook-basal body protein FliE; Reviewed
99.92 PRK12728 97
fliE flagellar hook-basal body protein FliE; Provisiona
99.93 COG1677 105
FliE Flagellar hook-basal body protein [Cell motility a
99.92 TIGR00205 114
fliE flagellar hook-basal body complex protein (FliE);
99.87 PRK12729 127
fliE flagellar hook-basal body protein FliE; Provisiona
99.79 PRK01699 99
fliE flagellar hook-basal body protein FliE; Reviewed
99.64 PRK01482 108
fliE flagellar hook-basal body protein FliE; Reviewed
99.38
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.96 E-value=6.3e-28 Score=185.25 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Q ss_conf 676528999966545421101367777778888665999999999999999999999999998148--989999999999
Q gi|254780379|r 4 EQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQ 81 (108)
Q Consensus 4 ~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~k 81 (108)
T Consensus 2 s~i~~i~~~l~qm~a~a~~a~~---~~~~~~a~~~~F~~~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~v~l~~vMIa~qk 78 (105)
T PRK00253 2 SAIQGIEGVLSQLQATAMEASG---TPKPLTAPTVSFAGMLKAALDKVNDTQQAARTLAEKFELGDPGVDLNDVMIALQK 78 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 5056599999999999998659---9999999999889999999999999999999999999869998879999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999961889
Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 79 A~lsfq~~~qVRNK~v~AYqEIM~MqV 105 (105)
T PRK00253 79 ASVSFQAGIQVRNKLVAAYQEIMNMQV 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 888999999999999999999982899
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.95 E-value=1.6e-27 Score=182.87 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 64676528999966545421101367777778888665999999999999999999999999998148989999999999
Q gi|254780379|r 2 MIEQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQ 81 (108)
Q Consensus 2 Mi~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~k 81 (108)
T Consensus 1 m~t~~~Aa~AY~a~~~~~~~~~~----~~~~~~~~G~sF~~~Lk~Ai~~v~~~q~~ae~~~~a~~~G~adl~~vv~a~~~ 76 (103)
T PRK00732 1 MATPLSAANAYASLARMADPSGA----GGGGGSGGGPSFGALLKDAMGSVLEAGRKSDAQTVAMASGKANVMDVVTAVAE 76 (103)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 97648999999999974165567----88888989977999999999999999999999999998489979999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999961889
Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 77 a~~~lq~~v~vRnk~v~AYqeImrMpi 103 (103)
T PRK00732 77 TDVAVSTLVSVRDRVIQAYEEIMRMPI 103 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999999999973899
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.95 E-value=3.1e-27 Score=181.19 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677777788886659999999999999999999999999981489-89999999999999999999999999999999
Q gi|254780379|r 24 DFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSE 102 (108)
Q Consensus 24 ~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqe 102 (108)
T Consensus 15 ~~~~~~~~~~~~~g~~F~~~L~~ai~~VN~~Q~~ad~~~~~la~G~~~dlHevmIa~ekA~ls~ql~~qVRNK~veAYqE 94 (100)
T PRK03907 15 KSETSKSTFKEGKGGEFAKMLKQSINELNKTQEQSDKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKE 94 (100)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57777775456887649999999999999999999999999976886769999999999888999999999999999999
Q ss_pred HHCCCC
Q ss_conf 961889
Q gi|254780379|r 103 VSKMQI 108 (108)
Q Consensus 103 ImrMqV 108 (108)
T Consensus 95 IMRMQI 100 (100)
T PRK03907 95 ILRTQI 100 (100)
T ss_pred HHHCCC
T ss_conf 985359
>pfam02049 FliE Flagellar hook-basal body complex protein FliE
Back Show alignment and domain information
Probab=99.93 E-value=2.2e-25 Score=170.19 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 367777778888665999999999999999999999999998148-9899999999999999999999999999999999
Q gi|254780379|r 25 FTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK-TSMREAVDHIMQAERTLNLSIALRDKILSAVSEV 103 (108)
Q Consensus 25 ~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~-~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeI 103 (108)
T Consensus 13 ~~~~~~~~~~~~~~sF~~~l~~a~~~vn~~q~~a~~~~~~~~~G~~~~l~~vmia~~kA~~s~q~~~qVRnK~v~AYqei 92 (97)
T pfam02049 13 GASAASASAAAGGASFADVLKQALDKVNDLQQKADALAEAFATGKSVDLHEVMIAVQKASLSFQATVQVRNKLVEAYQEI 92 (97)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877888899998899999999999999999999999999848988799999999999999999999999999999999
Q ss_pred HCCCC
Q ss_conf 61889
Q gi|254780379|r 104 SKMQI 108 (108)
Q Consensus 104 mrMqV 108 (108)
T Consensus 93 mrMqv 97 (97)
T pfam02049 93 MRMQI 97 (97)
T ss_pred HCCCC
T ss_conf 81889
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.92 E-value=9e-25 Score=166.58 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67777778888665999999999999999999999999998148989999999999999999999999999999999961
Q gi|254780379|r 26 TQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSK 105 (108)
Q Consensus 26 ~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImr 105 (108)
T Consensus 17 ~~~pa~~~~a~g~sF~~~l~~a~~~~~~t~~~aE~~s~~~~~Gkad~~~vv~a~~~Ae~slq~~v~VRdKvv~AYqEI~R 96 (99)
T PRK00790 17 ASAPAAAPAAPGASFASVLGQAAGDAVQTLKAAEATSIAAIKGKADPRAVVEAVMQAEQALQTAVAIRDKVVEAYQEILR 96 (99)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78988899999977999999999999999999999999987389979999999999999999999999999999999981
Q ss_pred CCC
Q ss_conf 889
Q gi|254780379|r 106 MQI 108 (108)
Q Consensus 106 MqV 108 (108)
T Consensus 97 M~i 99 (99)
T PRK00790 97 MPI 99 (99)
T ss_pred CCC
T ss_conf 889
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Back Show alignment and domain information
Probab=99.93 E-value=2.4e-25 Score=169.96 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=72.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78888665999999999999999999999999998148-989999999999999999999999999999999961889
Q gi|254780379|r 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK-TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 32 ~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~-~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 20 ~p~~~~~sF~~~L~~al~~Vn~~Q~~a~~~~~~~~~G~~~~lhevmia~qkA~ls~q~~~qVRNK~v~AYqEIMrMqv 97 (97)
T PRK12728 20 TPSEKQVSFSDFLKEALNKVNDKQVEADNSTEALIKGEDVDLHDVMIAAQKASISLQLAVQVRNKVVEAYQEIMRMQL 97 (97)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999998889999999999999999999999999984898889999999999999999999999999999999982889
>COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Back Show alignment and domain information
Probab=99.92 E-value=8.1e-25 Score=166.84 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6659999999999999999999999999981489-89999999999999999999999999999999961889
Q gi|254780379|r 37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 33 ~~sF~~~L~~ai~~vn~~Q~~a~~~~~~~~~G~~~~l~dVmia~~KAs~sLq~ai~VRnKlV~AYqEImrmqi 105 (105)
T COG1677 33 GASFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSLQTAIQVRNKLVSAYQEIMRMQI 105 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3339999999999999999999999999984896409999999999999999999999999999999986769
>TIGR00205 fliE flagellar hook-basal body complex protein (FliE); InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein
Back Show alignment and domain information
Probab=99.87 E-value=9.7e-22 Score=148.62 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7778888665999999999999999999999999998148--98999999999999999999999999999999996188
Q gi|254780379|r 30 NEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107 (108)
Q Consensus 30 ~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMq 107 (108)
T Consensus 34 ~~~~~~~~~~F~~~L~~Si~~~n~sQ~~~~~~~~~~~~g~~~~~l~~v~ia~~KA~~sl~~~~~vrnk~v~AYqei~~~q 113 (114)
T TIGR00205 34 SKAQDSDIKSFSDLLKNSIDELNESQLASDKVTEKLALGEKSVDLHDVMIAMQKASVSLKLLLEVRNKAVKAYQEIMRMQ 113 (114)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04677752028999999999886889999999999861998867889999999886999999999999999999996205
Q ss_pred C
Q ss_conf 9
Q gi|254780379|r 108 I 108 (108)
Q Consensus 108 V 108 (108)
T Consensus 114 ~ 114 (114)
T TIGR00205 114 V 114 (114)
T ss_pred C
T ss_conf 9
All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella . The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined . The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar . Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis . From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits . FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway . On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures .; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 flagellin-based flagellum.
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=3.6e-19 Score=133.40 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 665999999999999999999999999998148--98999999999999999999999999999999996188
Q gi|254780379|r 37 PISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQ 107 (108)
Q Consensus 37 ~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMq 107 (108)
T Consensus 55 a~sFa~~Lk~Al~~VNd~Qv~ADeLtqqmV~dpnSVDlHDVmIA~eKAsmsL~~T~~IrnKvVeAYqEIt~~R 127 (127)
T PRK12729 55 AESFSEAMKNALTSVNDLQVEADELTQKMVFDPNSVDAHDVMIASEKARVALTFTKTIADGVVRAYRELTSLR 127 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999865887224888777733987452999999998603059999999999999999987229
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.64 E-value=1.8e-15 Score=111.49 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999999999999981489-89999999999999999999999999999999961889
Q gi|254780379|r 40 FSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 40 F~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 30 ~Gk~F~~ll~d~N~tQnna~~Av~~l~T~g~gn~hdvlIqmkKAes~mktaa~VRdn~IeaYKelinmQi 99 (99)
T PRK01699 30 EGKKFIDLLEDMNQTQNNAQTAVYDLLTKGVGETHDVLIQQKKAESQMKTAALVRDNLIENYKSLINMQI 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1026999999999988879999999884377729999999999999999999999999999999986129
>PRK01482 fliE flagellar hook-basal body protein FliE; Reviewed
Back Show alignment and domain information
Probab=99.38 E-value=2.5e-12 Score=92.83 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88866599999999999999999999999999814--89899999999999999999999999999999999618
Q gi|254780379|r 34 GSSPISFSALLQDMAKGAIGDMEKAENVSLAALQG--KTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSKM 106 (108)
Q Consensus 34 ~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G--~~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImrM 106 (108)
T Consensus 33 n~~a~sF~~~lln~~~~vN~sQl~~~k~~eq~i~~P~SVDVHDv~IA~~kA~msLs~~k~v~dr~Vkayqdi~n~ 107 (108)
T PRK01482 33 NKKAKTFKDTLLNAIDDVNNSQLNVSKVTEQAILDPESVDVHDVTIAMAKANMNLSIAKAVVERSIKAYQDIINI 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 223656999999999887387604999988652695644299999999874003899999999999999998714
Homologous Domains in SCOP and MMDB Database