254780434
dihydroorotate dehydrogenase 2
| GeneID in NCBI database: | 8209420 | Locus tag: | CLIBASIA_01595 |
| Protein GI in NCBI database: | 254780434 | Protein Accession: | YP_003064847.1 |
| Gene range: | +(341066, 342154) | Protein Length: | 362aa |
| Gene description: | dihydroorotate dehydrogenase 2 | ||
| COG prediction: | [F] Dihydroorotate dehydrogenase | ||
| KEGG prediction: | pyrD; dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate oxidase [EC:1.3.3.1] | ||
| SEED prediction: | Dihydroorotate dehydrogenase (EC 1.3.3.1) | ||
| Pathway involved in KEGG: | Pyrimidine metabolism [PATH:las00240] | ||
| Subsystem involved in SEED: | De Novo Pyrimidine Synthesis | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 362 | dihydroorotate dehydrogenase 2 [Candidatus Liberibacter | |||
| 315122118 | 339 | dihydroorotate dehydrogenase 2 [Candidatus Liberibacter | 1 | 1e-155 | |
| 222084799 | 362 | dihydroorotate oxidase [Agrobacterium radiobacter K84] | 1 | 1e-120 | |
| 209547802 | 362 | dihydroorotate dehydrogenase [Rhizobium leguminosarum b | 1 | 1e-119 | |
| 116250343 | 362 | dihydroorotate dehydrogenase 2 [Rhizobium leguminosarum | 1 | 1e-118 | |
| 241202976 | 362 | dihydroorotate dehydrogenase 2 [Rhizobium leguminosarum | 1 | 1e-118 | |
| 15964302 | 362 | dihydroorotate dehydrogenase 2 [Sinorhizobium meliloti | 1 | 1e-118 | |
| 307307038 | 362 | dihydroorotate dehydrogenase [Sinorhizobium meliloti BL | 1 | 1e-117 | |
| 307320118 | 362 | dihydroorotate dehydrogenase [Sinorhizobium meliloti AK | 1 | 1e-117 | |
| 86356193 | 362 | dihydroorotate dehydrogenase 2 [Rhizobium etli CFN 42] | 1 | 1e-117 | |
| 190890237 | 362 | dihydroorotate dehydrogenase [Rhizobium etli CIAT 652] | 1 | 1e-116 |
| >gi|315122118|ref|YP_004062607.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 339 | Back alignment and organism information |
|---|
Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/339 (79%), Positives = 304/339 (89%)
Query: 24 LSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVE 83
+SI+ALKSGLLSFFP+HSD RLNTKVAGIS NPLGMAAGYDKNAEVP+ELLKLGFGFVE
Sbjct: 1 MSIIALKSGLLSFFPIHSDFRLNTKVAGISFPNPLGMAAGYDKNAEVPMELLKLGFGFVE 60
Query: 84 IGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGAN 143
+GT+TP+PQ GNP PRVFRL KD+AIIN+LGFNN G + FSRLSK+Q +SPIG+N+GAN
Sbjct: 61 VGTITPNPQDGNPPPRVFRLIKDQAIINQLGFNNEGSYAAFSRLSKMQTSSPIGVNIGAN 120
Query: 144 KDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEK 203
KDSKDFI+DYV GIR FFTIASYFTINISSPNTPGLR LQK++NLE+LL VMQTREEE
Sbjct: 121 KDSKDFIMDYVYGIRQFFTIASYFTINISSPNTPGLRHLQKRQNLEKLLTRVMQTREEEI 180
Query: 204 IKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGG 263
IKTGK VPIFLKISPDLSEEELDDIA E +SHKVEG++VSNTTLSR+G+Q S N E+ GG
Sbjct: 181 IKTGKSVPIFLKISPDLSEEELDDIATEAISHKVEGLVVSNTTLSREGLQDSLNKEKIGG 240
Query: 264 LSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323
LSGSPLFLKSTI LAK+RQRVG K+ IIGTGG+SST+DAL+KIMAGANLIQLYSAM+Y G
Sbjct: 241 LSGSPLFLKSTIILAKMRQRVGSKMVIIGTGGVSSTEDALEKIMAGANLIQLYSAMVYGG 300
Query: 324 ISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKKEV 362
ISLPK II+G S FL+KE + + E+IRGS TEYWAKKEV
Sbjct: 301 ISLPKSIIKGFSHFLDKEKKKSLEDIRGSRTEYWAKKEV 339
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222084799|ref|YP_002543328.1| dihydroorotate oxidase [Agrobacterium radiobacter K84] Length = 362 | Back alignment and organism information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/362 (57%), Positives = 265/362 (73%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ L RGL LDPE AH +SI ALKSGL+ V +DPRL VAG+ +NPLGM
Sbjct: 1 MIGSFRDLGRRGLFLLDPETAHGMSIAALKSGLVPTCRVSNDPRLRQIVAGLDFANPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLKLGFGF EIGTVTP PQ GNPRPR+FRL +D +IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKLGFGFTEIGTVTPKPQPGNPRPRIFRLVEDEGVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
RL I+ IG+N+GANKDS D I DYV+GIR F+++A YFT NISSPNTPGLR
Sbjct: 121 EAALRRLQPIRGNGIIGVNIGANKDSADRIADYVAGIRRFYSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R++E K GK +P+FLKI+PDL+EE +DDIA EVL+H ++G+
Sbjct: 181 DLQARESLSALLSAVLAARDDEAAKAGKKIPVFLKIAPDLTEEGMDDIAAEVLAHALDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR G++ ++ GGLSG P+F +ST+ LAK+R+RVG + IIG GG+SS +
Sbjct: 241 IVSNTTLSRDGLKDQVQAKEAGGLSGKPVFERSTVVLAKMRRRVGAALPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG LP R++ GLS L++E + +R S +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLPGRVVAGLSKLLDRERVASIRELRDSRLDYWADR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209547802|ref|YP_002279719.1| dihydroorotate dehydrogenase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 362 | Back alignment and organism information |
|---|
Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/362 (56%), Positives = 264/362 (72%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ +LA +GL DPE AH +SI ALKSGL+ + DPRL VAG++ NPLGM
Sbjct: 1 MIDPFKRLARKGLFLFDPETAHGMSIAALKSGLVPACQITPDPRLCQTVAGLTFENPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLKLGFGF EIGTVTP PQAGNPRPR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKLGFGFTEIGTVTPKPQAGNPRPRIFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
F RL+ + +G+N+GANKDS+D I DYV+GIR F ++A YFT NISSPNTPGLR
Sbjct: 121 EAAFGRLAALSGRGIVGVNIGANKDSEDRIADYVAGIRRFHSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R+E +G+ VP+FLKI+PDL+EE +DDIA E L+H ++G+
Sbjct: 181 DLQARESLAALLSSVLAARDEVAAASGRKVPVFLKIAPDLTEEGMDDIAAEALAHALDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR G++ ++ GGLSG PLF KST LA++R+RVG + IIG GG+SS +
Sbjct: 241 IVSNTTLSRDGLKDQRQAKETGGLSGVPLFEKSTAVLARMRKRVGAALPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG LP I++GLS +++E +R S +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLPGDIVRGLSKLMDREKAAGIGELRDSRLDYWAAR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116250343|ref|YP_766181.1| dihydroorotate dehydrogenase 2 [Rhizobium leguminosarum bv. viciae 3841] Length = 362 | Back alignment and organism information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 266/362 (73%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ +LA +GL DPE AH +SI ALKSGL+ + DPRL VAG++ NPLGM
Sbjct: 1 MIDPFKRLARKGLFLFDPETAHGMSIAALKSGLVPACQLTPDPRLRQTVAGLTFENPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLKLGFGF EIGTVTP PQ+GNPRPR+FRL +D +IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKLGFGFTEIGTVTPKPQSGNPRPRIFRLVEDEGVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
F RL+ ++ IG+N+GANKDS+D I DYV+GIR F+++A YFT NISSPNTPGLR
Sbjct: 121 DAAFGRLAALRGGGMIGVNIGANKDSEDRIADYVAGIRRFYSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R+E +G+ +P+FLKI+PDL+EE +DDIA E LSH ++G+
Sbjct: 181 DLQGRESLAVLLSAVLAARDEMGAASGRKIPVFLKIAPDLTEEGMDDIAAEALSHALDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR G++ ++ GGLSG PLF KST LA++R+RVGP + IIG GG+SS +
Sbjct: 241 IVSNTTLSRDGLKDQRQAKETGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG L +++GLS L++E + +R + +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLAGDVVRGLSKLLDREKAASIRELRDTRVDYWAAR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241202976|ref|YP_002974072.1| dihydroorotate dehydrogenase 2 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 362 | Back alignment and organism information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/362 (56%), Positives = 266/362 (73%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ +LA +GL DPE AH +SI ALKSGL+ + DPRL VAG++ NPLGM
Sbjct: 1 MIDPFKRLARKGLFLFDPETAHGMSIAALKSGLVPACQITPDPRLRQTVAGLTFENPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLKLGFGF EIGTVTP PQ+GNPRPR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKLGFGFTEIGTVTPKPQSGNPRPRIFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
F L+ ++ IG+N+GANKDS+D I DYV+GIR F+++A YFT NISSPNTPGLR
Sbjct: 121 DAAFGHLAALRGGGMIGVNIGANKDSEDRIADYVAGIRRFYSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R+E +G+ +P+FLKI+PDL+EE +DDIA E LSH ++G+
Sbjct: 181 DLQGRESLAVLLSAVLAARDEMAAASGRTIPVFLKIAPDLTEEGMDDIAAEALSHGLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR G++ ++ GGLSG PLF KST LA++R+RVGP + IIG GG+SS +
Sbjct: 241 IVSNTTLSRDGLKDQRQAKEAGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG L I++GLS L++E + ++R +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLAGDIVRGLSKLLDREKAASIRDLRDVRLDYWAAR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15964302|ref|NP_384655.1| dihydroorotate dehydrogenase 2 [Sinorhizobium meliloti 1021] Length = 362 | Back alignment and organism information |
|---|
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/362 (57%), Positives = 262/362 (72%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ L LA RGL DPE AH LSI ALKSGL+ +DPRL VAG+ SNP+GM
Sbjct: 1 MIGQLEHLARRGLFLFDPEAAHGLSIKALKSGLVPSCAAPADPRLGQTVAGLVFSNPIGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLK+GFGF EIGTVTP PQAGN +PR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKIGFGFTEIGTVTPRPQAGNDKPRLFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
+RL + IG+N+GANKDS D I DYV+GIR F+ +A YFT NISSPNTPGLR
Sbjct: 121 GAALARLKACSREALIGVNIGANKDSADRIADYVTGIRTFYAVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R++E K G+ VP+FLKI+PDL+EE +DDIA EVL+H ++G+
Sbjct: 181 DLQARESLSALLSAVLAARDDEARKGGRQVPVFLKIAPDLTEEGMDDIAAEVLAHGLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR+G++ + GGLSG PLF KST LA++R+RVGP + IIG GG+ S +
Sbjct: 241 IVSNTTLSREGLKDRRQANEAGGLSGKPLFEKSTAVLARMRKRVGPHLPIIGVGGVCSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
A +KI AGA+L+QLYS MIYEG LP RI++GLS +E + +IR S +YW+ +
Sbjct: 301 TAAEKIRAGADLVQLYSCMIYEGPGLPGRIVRGLSALCEREKLASIRDIRDSRLDYWSGR 360
Query: 361 EV 362
V
Sbjct: 361 NV 362
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307307038|ref|ZP_07586777.1| dihydroorotate dehydrogenase [Sinorhizobium meliloti BL225C] Length = 362 | Back alignment and organism information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/362 (56%), Positives = 262/362 (72%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ L LA RGL DPE AH LSI ALKSGL+ +DPRL VAG+ SNP+GM
Sbjct: 1 MIGQLEHLARRGLFLFDPEAAHGLSIKALKSGLVPSCAAPADPRLGQTVAGLVFSNPIGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLK+GFGF EIGTVTP PQAGN +PR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKIGFGFTEIGTVTPRPQAGNDKPRLFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
+RL + IG+N+GANKDS D I DYV+GIR F+ +A YFT NISSPNTPGLR
Sbjct: 121 GAALARLKACSREALIGVNIGANKDSADRIADYVTGIRTFYAVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R++E K G+ VP+FLKI+PDL+EE +DDIA EVL+H ++G+
Sbjct: 181 DLQARESLSALLSAVLAARDDEARKGGRQVPVFLKIAPDLTEEGMDDIAAEVLAHGLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR+G++ + GGLSG PLF KST LA++R+RVGP + IIG GG+ S +
Sbjct: 241 IVSNTTLSREGLKDRRQANEAGGLSGKPLFEKSTAVLARMRKRVGPHLPIIGVGGVCSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
A +KI AGA+L+QLYS MIYEG LP RI++GLS +E + ++R S +YW+ +
Sbjct: 301 TAAEKIRAGADLVQLYSCMIYEGPGLPGRIVRGLSALCEREKLASIRDMRDSRLDYWSGR 360
Query: 361 EV 362
V
Sbjct: 361 NV 362
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307320118|ref|ZP_07599538.1| dihydroorotate dehydrogenase [Sinorhizobium meliloti AK83] Length = 362 | Back alignment and organism information |
|---|
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/362 (56%), Positives = 261/362 (72%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ L LA RGL DPE AH LSI ALKSGL+ +DPRL VAG+ SNP+GM
Sbjct: 1 MIGQLEHLARRGLFLFDPEAAHGLSIKALKSGLVPSCAAPADPRLGQTVAGLVFSNPIGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLK+GFGF EIGTVTP PQ GN +PR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKIGFGFTEIGTVTPRPQPGNDKPRLFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
+RL + IG+N+GANKDS D I DYV+GIR F+ +A YFT NISSPNTPGLR
Sbjct: 121 GAALARLKACSREALIGVNIGANKDSADRIADYVTGIRTFYAVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R++E K G+ VP+FLKI+PDL+EE +DDIA EVL+H ++G+
Sbjct: 181 DLQARESLSALLSAVLAARDDEARKGGRQVPVFLKIAPDLTEEGMDDIAAEVLAHGLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR+G++ + GGLSG PLF KST LA++R+RVGP + IIG GG+ S +
Sbjct: 241 IVSNTTLSREGLKDRRQANEAGGLSGKPLFEKSTAVLARMRKRVGPHLPIIGVGGVCSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
A +KI AGA+L+QLYS M+YEG LP RI++GLS +E + +IR S +YW+ +
Sbjct: 301 TAAEKIRAGADLVQLYSCMVYEGPGLPGRIVRGLSALCEREKLASIRDIRDSRLDYWSGR 360
Query: 361 EV 362
V
Sbjct: 361 NV 362
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86356193|ref|YP_468085.1| dihydroorotate dehydrogenase 2 [Rhizobium etli CFN 42] Length = 362 | Back alignment and organism information |
|---|
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/362 (56%), Positives = 268/362 (74%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ +LA RGL DPE AH +SI ALKSGL+ + DPRL +AG++ NPLGM
Sbjct: 1 MIDPFQRLARRGLFLFDPETAHGMSIAALKSGLVPACQIAPDPRLRQTIAGLTFENPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LLKLGFGF EIGTVTP PQ+GNPRPR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLKLGFGFTEIGTVTPKPQSGNPRPRIFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
F RL+++ T G+N+GANKDS+D I DYV+GIR F ++A YFT NISSPNTPGLR
Sbjct: 121 EAAFRRLAELTGTGIFGVNIGANKDSEDRIADYVAGIRRFHSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R+E K+G+ +P+FLKI+PDL+EE +DDIA E L+H ++G+
Sbjct: 181 DLQARESLAALLSAVLAVRDEMAEKSGRKIPVFLKIAPDLTEEGMDDIAAEALAHPLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR G++ ++ GGLSG PLF KST LA++R+RVGP + IIG GG+SS +
Sbjct: 241 IVSNTTLSRDGLKDQRQAKEAGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG LP I++GLS L++E + +R S +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLPGTIVRGLSALLDREKAGSIRALRDSRLDYWAAR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190890237|ref|YP_001976779.1| dihydroorotate dehydrogenase [Rhizobium etli CIAT 652] Length = 362 | Back alignment and organism information |
|---|
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/362 (56%), Positives = 268/362 (74%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
M+ +LA +GL DPE AH +SI ALKSGL+ + DPRL VAG++ NPLGM
Sbjct: 1 MIDPFKRLARKGLFLFDPETAHGMSIAALKSGLVPACQITPDPRLRQTVAGLTFENPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVP LL+LGFGF EIGTVTP PQ+GNPRPR+FRL +D A+IN+LGFNN G+
Sbjct: 61 AAGYDKNAEVPEALLRLGFGFTEIGTVTPRPQSGNPRPRIFRLVEDEAVINRLGFNNEGH 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
F RLS + +G+N+GANKDS+D I DYV+GIR F+++A YFT NISSPNTPGLR
Sbjct: 121 EAAFERLSALTGKGVVGVNIGANKDSEDRITDYVAGIRCFYSVARYFTANISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
LQ +++L LL V+ R+E ++G+ +P+FLKI+PDL+EE +DDIA E L+H ++G+
Sbjct: 181 DLQARESLAALLSAVLAARDEMAERSGRKIPVFLKIAPDLTEEGMDDIAAEALAHPLDGL 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSR+G++ ++ GGLSG PLF KST LA++R+RVG + IIG GG+SS +
Sbjct: 241 IVSNTTLSREGLKDQRQAKETGGLSGVPLFEKSTAVLARMRKRVGAALPIIGVGGVSSAE 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
AL+KI AGA+L+QLYS M+YEG LP I++GLS L++E + +R S +YWA +
Sbjct: 301 TALEKIRAGADLVQLYSCMVYEGPGLPGNIVRGLSGLLDREKAGSIRELRDSRLDYWAAR 360
Query: 361 EV 362
+V
Sbjct: 361 KV 362
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 362 | dihydroorotate dehydrogenase 2 [Candidatus Liberibacter | ||
| PRK05286 | 344 | PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Rev | 1e-127 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 4e-93 | |
| KOG1436 | 398 | KOG1436, KOG1436, KOG1436, Dihydroorotate dehydrogenase | 6e-89 | |
| TIGR01036 | 335 | TIGR01036, pyrD_sub2, dihydroorotate dehydrogenase, sub | 2e-88 | |
| KOG1799 | 471 | KOG1799, KOG1799, KOG1799, Dihydropyrimidine dehydrogen | 9e-15 | |
| cd04738 | 327 | cd04738, DHOD_2_like, Dihydroorotate dehydrogenase (DHO | 1e-116 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide | 1e-75 | |
| pfam01180 | 290 | pfam01180, DHO_dh, Dihydroorotate dehydrogenase | 2e-67 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (D | 1e-41 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DH | 1e-24 | |
| PRK07259 | 301 | PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Re | 9e-20 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase | 2e-16 | |
| cd04741 | 294 | cd04741, DHOD_1A_like, Dihydroorotate dehydrogenase (DH | 1e-14 | |
| cd02940 | 299 | cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHP | 1e-13 | |
| PRK02506 | 310 | PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Re | 2e-12 | |
| PRK08318 | 420 | PRK08318, PRK08318, dihydropyrimidine dehydrogenase sub | 7e-04 | |
| PLN02495 | 385 | PLN02495, PLN02495, oxidoreductase, acting on the CH-CH | 7e-10 | |
| cd04739 | 325 | cd04739, DHOD_like, Dihydroorotate dehydrogenase (DHOD) | 8e-06 | |
| PRK07565 | 334 | PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Rev | 3e-05 | |
| PRK02506 | 310 | PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Re | 1e-05 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologo | 3e-04 | |
| pfam01070 | 301 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 5e-04 |
| >gnl|CDD|179992 PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Score = 450 bits (1161), Expect = e-127
Identities = 163/347 (46%), Positives = 228/347 (65%), Gaps = 13/347 (3%)
Query: 4 ILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFF-------PVHSDPRLNTKVAGISLSN 56
+ + LA L LDPE AH L+I ALK + ++DPRL V G++ N
Sbjct: 1 MYYPLARPLLFKLDPETAHELTIRALKRASRTPLLSLLRQRLTYTDPRLPVTVMGLTFPN 60
Query: 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116
P+G+AAG+DKN E L LGFGFVE+GTVTP PQ GNP+PR+FRL +D A+IN++GFN
Sbjct: 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 120
Query: 117 NAGYHTVFSRLSKIQPTSPIGINLGANKDS--KDFILDYVSGIRLFFTIASYFTINISSP 174
N G + RL K P+GIN+G NKD+ +D + DY+ + + A YFT+NISSP
Sbjct: 121 NDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSP 180
Query: 175 NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLS 234
NTPGLR LQ + L+ LL + + + E +VP+ +KI+PDLS+EELDDIA L
Sbjct: 181 NTPGLRDLQYGEALDELLAALKEAQAE----LHGYVPLLVKIAPDLSDEELDDIADLALE 236
Query: 235 HKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294
H ++G+I +NTTLSR G++ N ++ GGLSG PLF +ST + ++ + +G ++ IIG G
Sbjct: 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVG 296
Query: 295 GISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKE 341
GI S +DA +KI AGA+L+Q+YS +IYEG L K I++GL+ L ++
Sbjct: 297 GIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRD 343
|
Length = 344 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = 4e-93
Identities = 158/340 (46%), Positives = 206/340 (60%), Gaps = 25/340 (7%)
Query: 16 LDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELL 75
LDPE AH L+I A GL+ L +V G + SNP+G+AAG+DKNAE LL
Sbjct: 45 LDPETAHSLAISAAARGLVPREKRPDPSVLGVEVWGRTFSNPIGLAAGFDKNAEAVEGLL 104
Query: 76 KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRL------SK 129
LGFGFVEIG+VTP PQ GNP+PRVFRL ++ AIIN+ GFN+ G V RL K
Sbjct: 105 GLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGKRK 164
Query: 130 IQPTS------------------PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINI 171
+ TS +G+NLG NK S+D DYV G+R A Y IN+
Sbjct: 165 LDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINV 224
Query: 172 SSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVE 231
SSPNTPGLR LQ +K L+ LL V+ R+E + P+ +KI+PDLS+E+L+DIA
Sbjct: 225 SSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 284
Query: 232 VLSHKVEGIIVSNTTLSRKGVQCSDNHEQD-GGLSGSPLFLKSTIALAKIRQRVGPKIAI 290
L+ ++G+I+SNTT+SR H + GGLSG PLF ST L ++ + KI +
Sbjct: 285 ALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPL 344
Query: 291 IGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330
+G GG+SS +DA KI AGA+L+QLY+A YEG +L RI
Sbjct: 345 VGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRI 384
|
Length = 409 |
| >gnl|CDD|36649 KOG1436, KOG1436, KOG1436, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 323 bits (828), Expect = 6e-89
Identities = 169/344 (49%), Positives = 225/344 (65%), Gaps = 9/344 (2%)
Query: 16 LDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELL 75
LDPE +H L+++A GLL V D L TKV G SNP+G+AAG+DKNAE L
Sbjct: 55 LDPEFSHRLAVLAASWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLA 114
Query: 76 KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI----- 130
GFGF+EIG+VTP PQ GNP+PRVFRL +D A+IN+ GFN+ G V RL
Sbjct: 115 NSGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKY 174
Query: 131 -QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLE 189
+ + +G+NLG NK S+D ILDYV G+R+F A Y IN+SSPNTPGLRSLQKK +L
Sbjct: 175 PEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLR 234
Query: 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSR 249
+LL V+Q R +K+ GK P+ +KI+PDLSE+EL DIA+ V ++G+IVSNTT+SR
Sbjct: 235 KLLTKVVQAR--DKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSR 292
Query: 250 -KGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308
K + E+ GGLSG PL ST + + KI IIG GG+SS KDA +KI A
Sbjct: 293 PKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRA 352
Query: 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352
GA+L+QLY+A++YEG ++ ++I + LS L + + ++ G
Sbjct: 353 GASLVQLYTALVYEGPAIIEKIKRELSALLKAKGFTSVDDAIGK 396
|
Length = 398 |
| >gnl|CDD|130108 TIGR01036, pyrD_sub2, dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = 2e-88
Identities = 151/332 (45%), Positives = 210/332 (63%), Gaps = 10/332 (3%)
Query: 11 RGLTHLDPEIAHHLSIVALKSGLLSFF------PVHSDPRLNTKVAGISLSNPLGMAAGY 64
+ L LDPE AH L+ L+ G + F + L V G+ NPLG+AAG+
Sbjct: 6 KLLFLLDPESAHELTFQFLRLGTGTPFLALLRSLFGASDPLEVTVLGLKFPNPLGLAAGF 65
Query: 65 DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124
DK+ E L +GFGF+EIGTVTP PQ GNPRPR+FRL +D A+IN++GFNN G +
Sbjct: 66 DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLV 125
Query: 125 SRLSKIQPTSPIGINLGANKD--SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSL 182
RL + + PIGIN+G NKD S+D DY + +R +A Y +N+SSPNTPGLR L
Sbjct: 126 ERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDL 185
Query: 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIV 242
Q K L LL V Q E++ ++ VP+ +KI+PDL+E +L+DIA ++ ++G+I
Sbjct: 186 QYKAELRDLLTAVKQ--EQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIA 243
Query: 243 SNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302
+NTT+SR VQ N ++ GGLSG PL KST + ++ + ++ IIG GGISS +DA
Sbjct: 244 TNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDA 303
Query: 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334
L+KI AGA+L+Q+YS IY G L K I++ +
Sbjct: 304 LEKIRAGASLLQIYSGFIYWGPPLVKEIVKEI 335
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. Length = 335 |
| >gnl|CDD|37010 KOG1799, KOG1799, KOG1799, Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (188), Expect = 9e-15
Identities = 71/362 (19%), Positives = 137/362 (37%), Gaps = 38/362 (10%)
Query: 23 HLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGF 81
+++ +GL + + S L G +NP + AE+ G+G+
Sbjct: 82 DFTVIEDYTGLKALLYLKSIEELVD-WDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGY 140
Query: 82 VEIGTVT-PHPQAGNPRPRVFRLTKDRA----------IINKLGFNNAGYH-TVFSRLSK 129
+E T + N PRV R R+ I + A + F L
Sbjct: 141 LEQKTKILDENKVRNVEPRVARSPTKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKN 200
Query: 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLE 189
++P + + + K ++ SG + N+S P+ R +
Sbjct: 201 VEPVVIMIASEMCIYNKKCWMELNDSGEQ---AGQDDLETNLSCPHGMCERGMGLALGQC 257
Query: 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSR 249
++ + K +P+ K++P++ + ++A V EGI NT +S
Sbjct: 258 PIVDCEVCGWINAKAT----IPMVSKMTPNI--TDKREVARSVNPVGCEGIAAINTIMSV 311
Query: 250 KGVQ--------CSDNHEQDGGLSGS---PLFLKSTIALAKIRQRVGPKIAIIGTGGISS 298
G+ C + + GG S P+ L + +AK+ + + ++ G GG+ +
Sbjct: 312 MGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK----EFSLSGIGGVET 367
Query: 299 TKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWA 358
DA + I+ G+N +Q+ + ++ G K + L DF+ + N E RG +Y+
Sbjct: 368 GYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHNFSTIEEFRGHSLQYFT 427
Query: 359 KK 360
Sbjct: 428 TH 429
|
Length = 471 |
| >gnl|CDD|73400 cd04738, DHOD_2_like, Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Score = 412 bits (1061), Expect = e-116
Identities = 174/328 (53%), Positives = 223/328 (67%), Gaps = 10/328 (3%)
Query: 13 LTHLDPEIAHHLSIVALKSGLLSFFP---VHSDPRLNTKVAGISLSNPLGMAAGYDKNAE 69
L LDPE AH L+I ALK GL V+ DPRL +V G++ NP+G+AAG+DKNAE
Sbjct: 4 LFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAE 63
Query: 70 VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129
LL LGFGFVE+GTVTP PQ GNP+PR+FRL +D A+IN++GFNN G V RL K
Sbjct: 64 AIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKK 123
Query: 130 IQP-TSPIGINLGANKDSK--DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKK 186
+P P+G+N+G NKD+ D + DYV G+R A Y +N+SSPNTPGLR LQ K+
Sbjct: 124 RRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKE 183
Query: 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTT 246
L LL V EE+ K GK VP+ +KI+PDLS+EEL+DIA L H V+GII +NTT
Sbjct: 184 ALRELLTAVK----EERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239
Query: 247 LSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKI 306
+SR G+ S + GGLSG+PL +ST L ++ + G KI IIG GGISS +DA +KI
Sbjct: 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKI 299
Query: 307 MAGANLIQLYSAMIYEGISLPKRIIQGL 334
AGA+L+QLY+ ++YEG L KRI + L
Sbjct: 300 RAGASLVQLYTGLVYEGPGLVKRIKREL 327
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.. Length = 327 |
| >gnl|CDD|30516 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 279 bits (714), Expect = 1e-75
Identities = 121/318 (38%), Positives = 182/318 (57%), Gaps = 21/318 (6%)
Query: 44 RLNTKVAGISLSNPLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFR 102
L+T++ G+ NPLG+AAG+D KN E L LGFG + TVTP PQ GNP+PR+FR
Sbjct: 1 DLSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFR 60
Query: 103 LTKDRAIINKLGFNNAGYHTVFSRLSKIQPT-SPIGINLGANKD--SKDFILDYVSGIRL 159
L +D +IN++GFNN G L + PIG+N+G NK S++ DY +
Sbjct: 61 LPEDEGLINRMGFNNPGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEE 120
Query: 160 FFTIASYFTINISSPNTPGLRSLQKKKN-LERLLIHVMQTREEEKIKTGKFVPIFLKISP 218
A +NIS PNTPG R+L + LE+LL E +K VP+F+K++P
Sbjct: 121 AGD-ADAIELNISCPNTPGGRALGQDPELLEKLL---------EAVKAATKVPVFVKLAP 170
Query: 219 DLSEEELDDIAVEVLSHKVEGIIVSNTTLSR----KGVQCSDNHEQDGGLSGSPLFLKST 274
+ ++D+IA +G+I NTT S + + GGLSG PL +
Sbjct: 171 N--ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228
Query: 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334
+A++ +R+G I IIG GGI + +DAL+ I+AGA+ +Q+ +A+IY+G + K II+GL
Sbjct: 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGL 288
Query: 335 SDFLNKENEVNFENIRGS 352
+ +L ++ + ++I GS
Sbjct: 289 ARWLEEKGFESIQDIIGS 306
|
Length = 310 |
| >gnl|CDD|144683 pfam01180, DHO_dh, Dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 2e-67
Identities = 116/306 (37%), Positives = 170/306 (55%), Gaps = 27/306 (8%)
Query: 44 RLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFR 102
L K+ G+ NP+G+A+G+DK E ++ L LG FG +EI +VTP PQ GNP PRVFR
Sbjct: 1 MLAVKIPGLKFKNPIGLASGFDKFGEEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFR 60
Query: 103 LTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLF 160
L + ++N +G NN G V L K + P+GI L + + DYV R
Sbjct: 61 LPEG--VLNAMGLNNPGLDAVLEELLKRRKEYPRPLGIILSKAGSTVE---DYVEVARKI 115
Query: 161 FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL 220
A Y +N+S PNTPGLR+LQ L +L+ V++ + VP+ +K++PDL
Sbjct: 116 GPFADYLELNVSCPNTPGLRALQTDPELAAILLKVVKEVSK--------VPVLVKLAPDL 167
Query: 221 SEEELDDIAVEVLS-HKVEGIIVSNTTLSR--KGVQCSDNHEQD--GGLSGSPLFLKSTI 275
++ + DIA + GI +NTT+ ++ + GGLSG + I
Sbjct: 168 TDIVIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAI---KPI 224
Query: 276 ALAKIR---QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332
AL IR QRVGP+I IIG GGI + +DAL+KI+AGA+ +Q+ +A+I+ G + +II
Sbjct: 225 ALKVIRELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIID 284
Query: 333 GLSDFL 338
L + L
Sbjct: 285 ELPELL 290
|
Length = 290 |
| >gnl|CDD|73372 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-41
Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 28/302 (9%)
Query: 47 TKVAGISLSNPLGMAAGYDKNAEVPIELL-KLGFGFVEIGTVTPHPQAGNPRPRVFRLTK 105
G+ L NP G+AAG I GFG V TVT HP+ GNP PRV RL
Sbjct: 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPP 60
Query: 106 DR-------AIINKLGFNNAGYHTVFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVS 155
+ I+N G N G ++K + P P+ ++G + SK+ ++
Sbjct: 61 EGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGS--SKEDYVELAR 118
Query: 156 GIRLFFTIASYFTINISSPNTPGLRSL-QKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214
I A +N+S PN G R L Q + + LL + +K +P+ +
Sbjct: 119 KIERAG--AKALELNLSCPNVGGGRQLGQDPEAVANLL---------KAVKAAVDIPLLV 167
Query: 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD---NHEQDGGLSGSPLFL 271
K+SP E++ ++A +G+ NT R + GGLSG+P+
Sbjct: 168 KLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRP 227
Query: 272 KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRII 331
+ +A++ R+ I IIG GGI S +D L+ +MAGA+ +Q+ +A++++G + ++I
Sbjct: 228 LALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287
Query: 332 QG 333
+
Sbjct: 288 KE 289
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.. Length = 289 |
| >gnl|CDD|73402 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 78/320 (24%), Positives = 144/320 (45%), Gaps = 40/320 (12%)
Query: 47 TKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTK 105
++AG+ L NP+ +A+G + E+ G + ++T P+ GNP PRV
Sbjct: 2 VELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP- 60
Query: 106 DRAIINKLGFNNAGYHTVFSRLS--KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTI 163
++N +G N G L + +P+ ++ + + ++V
Sbjct: 61 -GGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAG--STVE---EFVEVAEKLADA 114
Query: 164 -ASYFTINISSPNTP--GLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL 220
A +NIS PN G+ + + ++ + +K VP+ +K++P++
Sbjct: 115 GADAIELNISCPNVKGGGMAFGTDPEAVAEIV---------KAVKKATDVPVIVKLTPNV 165
Query: 221 SEEELDDIAVEVLSHKVEGIIVSNTTL-------SRKGVQCSDNHEQDGGLSGSPLFLKS 273
++ + +IA +G+ + NT +RK + + GGLSG +
Sbjct: 166 TD--IVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVT----GGLSGPAIK--- 216
Query: 274 TIALAKIRQ-RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332
IAL + Q +I IIG GGI+S +DAL+ +MAGA+ +Q+ +A + K II+
Sbjct: 217 PIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NFVDPEAFKEIIE 275
Query: 333 GLSDFLNKENEVNFENIRGS 352
GL +L++E + E + G
Sbjct: 276 GLEAYLDEEGIKSIEELVGL 295
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.. Length = 296 |
| >gnl|CDD|180909 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 9e-20
Identities = 86/343 (25%), Positives = 136/343 (39%), Gaps = 81/343 (23%)
Query: 44 RLNTKVAGISLSNPLGMAAG-----------YDKNAEVPIELLKLGFGFVEIGTVTPHPQ 92
RL+ ++ G+ L NP+ A+G YD N G G + + T P+
Sbjct: 1 RLSVELPGLKLKNPVMPASGTFGFGGEYARFYDLN----------GLGAIVTKSTTLEPR 50
Query: 93 AGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGAN---KDSKDF 149
GNP PR+ ++N +G N G ++ + AN +++
Sbjct: 51 EGNPTPRIAET--PGGMLNAIGLQNPGVDAFIEE--ELPWLEEFDTPIIANVAGSTEEEY 106
Query: 150 I--------LDYVSGIRLFFTIASYFTINISSPN--TPGLRSLQKKKNLERLLIHVMQTR 199
V I L NIS PN G+ + ++
Sbjct: 107 AEVAEKLSKAPNVDAIEL----------NISCPNVKHGGMAFGTDPELAYEVV------- 149
Query: 200 EEEKIKTGKFVPIFLKISP---DLSEEELDDIAVEVLSHKVEGIIVSNTTL-------SR 249
+ +K VP+ +K++P D+ E IA +G+ + NT +R
Sbjct: 150 --KAVKEVVKVPVIVKLTPNVTDIVE-----IAKAAEEAGADGLSLINTLKGMAIDIKTR 202
Query: 250 KGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ-RVGPKIAIIGTGGISSTKDALDKIMA 308
K + N GGLSG + IAL + Q I IIG GGISS +DA++ IMA
Sbjct: 203 KPIL--ANVT--GGLSGPAIK---PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMA 255
Query: 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
GA+ +Q+ +A + +II+GL +L+K + E I G
Sbjct: 256 GASAVQVGTA-NFYDPYAFPKIIEGLEAYLDKYGIKSIEEIVG 297
|
Length = 301 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 40/322 (12%)
Query: 45 LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRL 103
L ++ GI NPL +A+G E + + G G V ++ P+ G P +
Sbjct: 1 LEVELFGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVET 60
Query: 104 TKDRAIINKLGFNNAGYHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFF 161
++N +G N G L + + +P+ ++ ++F + +
Sbjct: 61 PC--GMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASV-YGSSVEEFA-EVAEKLEKAP 116
Query: 162 TIASYFTINISSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD 219
+ +N+S P+ G+ Q + ++ + +K VP+F K+SP+
Sbjct: 117 PYVDAYELNLSCPHVKGGGIAIGQDPELSADVV---------KAVKDKTDVPVFAKLSPN 167
Query: 220 LSEEELDDIAVEVLSHKVEGIIVSNTTL-------SRKGVQCSDNHEQDGGLSG---SPL 269
+++ + +IA +G+ + NT + K + + + GGLSG P+
Sbjct: 168 VTD--ITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILAN----KTGGLSGPAIKPI 221
Query: 270 FLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKR 329
L+ + K+ I IIG GGI+S +DAL+ +MAGA+ +Q+ +A+ Y G K+
Sbjct: 222 ALRMVYDVYKMVD-----IPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG-FAFKK 275
Query: 330 IIQGLSDFLNKENEVNFENIRG 351
II+GL FL E + E + G
Sbjct: 276 IIEGLIAFLKAEGFTSIEELIG 297
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|73403 cd04741, DHOD_1A_like, Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 1e-14
Identities = 75/312 (24%), Positives = 120/312 (38%), Gaps = 42/312 (13%)
Query: 47 TKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTK 105
G+++S PL AAG + E +EL G V + T + GNP PR +
Sbjct: 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPL 60
Query: 106 DRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFIL-------DYVSGIR 158
IN LG N G + I G +K F + D + +
Sbjct: 61 --GSINSLGLPNLGLDYYLEYIRTISD--------GLPGSAKPFFISVTGSAEDIAAMYK 110
Query: 159 LFFTIASYFT----INISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214
F +N+S PN PG + + L ++ +K +P+ +
Sbjct: 111 KIAAHQKQFPLAMELNLSCPNVPG--KPPPAYDFDATLEYL------TAVKAAYSIPVGV 162
Query: 215 KISPDLSEEELDDIAVEVLSHKVEGI--IVSNTTLSRKGVQCSDNHEQD--------GGL 264
K P + D +A E L+ I I + TL G+ E GGL
Sbjct: 163 KTPPYTDPAQFDTLA-EALNAFACPISFITATNTLG-NGLVLDPERETVVLKPKTGFGGL 220
Query: 265 SGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI 324
+G+ L + + R+ + +I IIG GG+ + A +AGA+ +Q+ +A+ EG
Sbjct: 221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGP 280
Query: 325 SLPKRIIQGLSD 336
+ RI + L D
Sbjct: 281 KVFARIEKELED 292
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.. Length = 294 |
| >gnl|CDD|73382 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 68/314 (21%), Positives = 125/314 (39%), Gaps = 40/314 (12%)
Query: 45 LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTP-HPQAGNPRPRVFR 102
L+ GI NP G+A+ + + + G+G T+ N PR+ R
Sbjct: 2 LSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIAR 61
Query: 103 LTKDRAIINKLGFNN---------AGYHTVFSRLSKIQPTSPI--GINLGANKDSKDFIL 151
L ++GFNN + L K P + I NK+ +
Sbjct: 62 LRTSGR--GQIGFNNIELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELA 119
Query: 152 DYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVP 211
V A +N S P+ R + + L+ R ++ +P
Sbjct: 120 KLVEE-----AGADALELNFSCPHGMPERGMGAAVGQDPELVE-EICRW---VREAVKIP 170
Query: 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ--------CSDNHEQDGG 263
+ K++P++++ + +IA +G+ NT S GV + GG
Sbjct: 171 VIAKLTPNITD--IREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGG 228
Query: 264 LSGS---PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320
SG P+ L+ A+++I + P + I G GGI S +DA + ++ GA+++Q+ +A++
Sbjct: 229 YSGPAVKPIALR---AVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVM 285
Query: 321 YEGISLPKRIIQGL 334
+G ++ + GL
Sbjct: 286 NQGFTIVDDMCTGL 299
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.. Length = 299 |
| >gnl|CDD|179435 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 6/93 (6%)
Query: 262 GGLSGSPLFLKSTIALAKIR---QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318
GG+ G ++K T ALA +R QR+ P I IIGTGG+ + +DA + I+ GA+++Q+ +A
Sbjct: 216 GGIGGD--YIKPT-ALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTA 272
Query: 319 MIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
+ EG ++ +R+ + L + ++ + E+ RG
Sbjct: 273 LHKEGPAVFERLTKELKAIMAEKGYQSLEDFRG 305
|
Length = 310 |
| >gnl|CDD|181383 PRK08318, PRK08318, dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 262 GGLSGS---PLFLKSTIALAKIRQ-RVGPKIA---IIGTGGISSTKDALDKIMAGANLIQ 314
GG G P IAL + + P+ I G GGI + +DA + I+ GA +Q
Sbjct: 227 GGYCGPAVKP------IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280
Query: 315 LYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
+ +A + G + + +I GLS +++++ + E++ G
Sbjct: 281 VCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVG 317
|
Length = 420 |
| >gnl|CDD|178112 PLN02495, PLN02495, oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 210 VPIFLKISPDLSEEELDDI---AVEVLSHKVEGIIVSNTTLSRKGVQ--------CSDNH 258
VP++ K++P+++ DI A L EG+ NT +S G+ C + +
Sbjct: 183 VPVWAKMTPNIT-----DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGY 237
Query: 259 EQDGGLSGS---PLFLKSTIALAKIRQRVGPK-IAIIGTGGISSTKDALDKIMAGANLIQ 314
GG S P+ L +A+AK+ + P+ ++ G GG+ + DA + I+ GA+ +Q
Sbjct: 238 STPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQ 297
Query: 315 LYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEY 356
+ + ++ G L K + L DF+ K N + E+ RG+ Y
Sbjct: 298 VCTGVMMHGYPLVKNLCAELQDFMKKHNFSSIEDFRGASLPY 339
|
Length = 385 |
| >gnl|CDD|73401 cd04739, DHOD_like, Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN---------TTLS-RKGVQCSDNHE 259
+P+ +K+SP S L +A ++ + +G+++ N TL + S E
Sbjct: 164 IPVAVKLSPFFSA--LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAE 221
Query: 260 QDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319
L +A + RV +A +GG+ +D + ++AGA+++ SA+
Sbjct: 222 IRLPLRW----------IAILSGRVKASLAA--SGGVHDAEDVVKYLLAGADVVMTTSAL 269
Query: 320 IYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352
+ G ++ GL ++ + + + +RGS
Sbjct: 270 LRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS 302
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.. Length = 325 |
| >gnl|CDD|181033 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 46/164 (28%)
Query: 210 VPIFLKISPDLSE-----EELD----------------DIAVEVLSHKVEGIIVSNTTLS 248
+P+ +K+SP S + LD DI +E L +V LS
Sbjct: 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLE------VVPGLVLS 219
Query: 249 RKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308
+ L PL IA+ RVG +A T G+ +D + ++A
Sbjct: 220 TP---------AELRL---PL---RWIAIL--SGRVGADLAA--TTGVHDAEDVIKMLLA 260
Query: 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352
GA+++ + SA++ G I++GL D++ + + + RGS
Sbjct: 261 GADVVMIASALLRHGPDYIGTILRGLEDWMERHGYESLQQFRGS 304
|
Length = 334 |
| >gnl|CDD|179435 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 19/144 (13%)
Query: 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFR 102
+T++AG N L AAG Y E E+ G + T P+ GNP PR
Sbjct: 1 STSTQIAGFKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYAD 60
Query: 103 LTKDRAIINKLGFNNAG---YHTVFSRLSKIQPTSPIGINL-GANKDSKDFILDYVSGIR 158
IN +G N G Y L K P P +++ G + + IL +
Sbjct: 61 TP--LGSINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQ--- 115
Query: 159 LFFTIASYFT----INISSPNTPG 178
AS F +N+S PN PG
Sbjct: 116 -----ASDFNGLVELNLSCPNVPG 134
|
Length = 310 |
| >gnl|CDD|73371 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 23/96 (23%)
Query: 229 AVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGG--LSGSPLFLKSTI-ALAKIRQRVG 285
A+ + +GI+VSN H GG L G+P +TI AL +I VG
Sbjct: 186 ALRAVDAGADGIVVSN-------------H---GGRQLDGAP----ATIDALPEIVAAVG 225
Query: 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321
+I ++ GGI D L + GA+ + + +Y
Sbjct: 226 GRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY 261
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.. Length = 299 |
| >gnl|CDD|144604 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 210 VPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGG--LS 265
P+ LK +SP+ D A + V+GI+VSN H GG L
Sbjct: 170 GPLVLKGILSPE-------D-AKRAVEAGVDGIVVSN-------------H---GGRQLD 205
Query: 266 GSPLFLKSTI-ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIY 321
G+P +TI AL +I VG +I ++ GGI D L K +A GA+ + L +Y
Sbjct: 206 GAP----ATIDALPEIVAAVGGRIPVLVDGGIRRGTDVL-KALALGADAVLLGRPFLY 258
|
Length = 301 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 362 | dihydroorotate dehydrogenase 2 [Candidatus Liberibacter | ||
| TIGR01036 | 370 | pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 D | 100.0 | |
| PRK05286 | 336 | dihydroorotate dehydrogenase 2; Reviewed | 100.0 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | 100.0 | |
| KOG1436 | 398 | consensus | 100.0 | |
| pfam01070 | 301 | FMN_dh FMN-dependent dehydrogenase. | 99.75 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dep | 99.75 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. | 99.73 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | 99.68 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding dom | 99.67 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.67 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding | 99.57 | |
| KOG0538 | 363 | consensus | 99.38 | |
| TIGR02708 | 368 | L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Mem | 99.27 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide transport | 100.0 | |
| TIGR01037 | 308 | pyrD_sub1_fam dihydroorotate dehydrogenase family prote | 100.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 100.0 | |
| PRK02506 | 308 | dihydroorotate dehydrogenase 1A; Reviewed | 100.0 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class | 100.0 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class | 100.0 | |
| PRK08318 | 413 | dihydropyrimidine dehydrogenase; Validated | 100.0 | |
| pfam01180 | 290 | DHO_dh Dihydroorotate dehydrogenase. | 100.0 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and D | 100.0 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-bin | 100.0 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like prot | 100.0 | |
| PRK07565 | 333 | dihydroorotate dehydrogenase 2; Reviewed | 100.0 | |
| KOG1799 | 471 | consensus | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.77 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosp | 99.76 | |
| TIGR00737 | 336 | nifR3_yhdG putative TIM-barrel protein, nifR3 family; I | 99.73 | |
| PRK05437 | 351 | isopentenyl pyrophosphate isomerase; Provisional | 99.72 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosomal st | 99.66 | |
| TIGR02151 | 349 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase, typ | 99.65 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN bi | 99.51 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN bind | 99.5 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.49 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 a | 99.48 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN bind | 99.47 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN bind | 99.46 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding dom | 99.46 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN bind | 99.42 | |
| pfam00724 | 336 | Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase | 99.41 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding doma | 99.38 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzyme fam | 99.35 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and h | 99.3 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. Memb | 99.29 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding d | 99.28 | |
| PRK09853 | 1032 | putative selenate reductase subunit YgfK; Provisional | 99.22 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine monoph | 99.18 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN bind | 99.12 | |
| PRK08255 | 770 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.08 | |
| PRK13597 | 252 | imidazole glycerol phosphate synthase subunit HisF; Pro | 98.8 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisional | 98.78 | |
| PRK05096 | 347 | guanosine 5'-monophosphate oxidoreductase; Provisional | 98.7 | |
| PRK03220 | 257 | consensus | 98.68 | |
| PRK08649 | 368 | inositol-5-monophosphate dehydrogenase; Validated | 98.66 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF; Pro | 98.65 | |
| PRK13129 | 267 | consensus | 98.62 | |
| PRK13115 | 269 | consensus | 98.6 | |
| PRK02145 | 257 | consensus | 98.57 | |
| PRK13125 | 247 | trpA tryptophan synthase subunit alpha; Provisional | 98.57 | |
| PRK02621 | 254 | consensus | 98.57 | |
| PRK01659 | 252 | consensus | 98.55 | |
| PRK00830 | 273 | consensus | 98.55 | |
| PRK04281 | 254 | consensus | 98.52 | |
| PRK02747 | 257 | consensus | 98.51 | |
| PRK05211 | 248 | consensus | 98.49 | |
| PRK13118 | 269 | consensus | 98.46 | |
| PRK13119 | 261 | consensus | 98.43 | |
| PRK13113 | 263 | consensus | 98.4 | |
| PRK13122 | 242 | consensus | 98.37 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino acid t | 98.1 | |
| PRK13131 | 257 | consensus | 97.9 | |
| ), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00735">TIGR00735 | 312 | hisF imidazoleglycerol phosphate synthase, cyclase subu | 97.77 | |
| TIGR01304 | 376 | IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro | 97.39 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 97.24 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.15 | |
| PRK00230 | 231 | orotidine 5'-phosphate decarboxylase; Reviewed | 97.02 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuraminate l | 97.02 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.89 | |
| TIGR01163 | 216 | rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 | 96.88 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate trans | 96.87 | |
| pfam00701 | 289 | DHDPS Dihydrodipicolinate synthetase family. This famil | 96.82 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro- | 96.72 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 96.61 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enz | 96.58 | |
| PRK04147 | 294 | N-acetylneuraminate lyase; Provisional | 96.48 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme | 96.36 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A membe | 96.3 | |
| PRK08091 | 235 | ribulose-phosphate 3-epimerase; Validated | 96.26 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.12 | |
| PRK08005 | 210 | ribulose-phosphate 3-epimerase; Validated | 96.08 | |
| TIGR01182 | 205 | eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydrox | 96.04 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) | 96.02 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Membe | 95.85 | |
| PRK08195 | 337 | 4-hydroxy-2-ketovalerate aldolase; Validated | 95.69 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 95.56 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called N-ace | 95.54 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases fo | 95.29 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase/chor | 95.21 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.17 | |
| TIGR00259 | 261 | TIGR00259 conserved hypothetical protein TIGR00259; Int | 94.3 | |
| TIGR01361 | 262 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldo | 93.69 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FM | 99.65 | |
| pfam01207 | 309 | Dus Dihydrouridine synthase (Dus). Members of this fami | 99.64 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.61 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.61 | |
| KOG2335 | 358 | consensus | 99.39 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.07 | |
| KOG2333 | 614 | consensus | 98.98 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid transport | 98.89 | |
| pfam01645 | 367 | Glu_synthase Conserved region in glutamate synthase. Th | 98.81 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, a | 98.66 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phosphate | 98.51 | |
| PRK13585 | 240 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 98.46 | |
| pfam00977 | 229 | His_biosynth Histidine biosynthesis protein. Proteins i | 98.39 | |
| TIGR00742 | 326 | yjbN TIM-barrel protein, yjbN family; InterPro: IPR0046 | 98.28 | |
| PRK00748 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 98.23 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 98.18 | |
| PRK11750 | 1483 | gltB glutamate synthase subunit alpha; Provisional | 98.1 | |
| pfam04481 | 243 | DUF561 Protein of unknown function (DUF561). Protein of | 97.93 | |
| KOG2334 | 477 | consensus | 97.65 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epimerase | 97.53 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Review | 97.23 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provi | 96.48 | |
| PRK06857 | 209 | consensus | 96.34 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 95.9 | |
| PTZ00170 | 224 | D-ribulose-5-phosphate 3-epimerase; Provisional | 95.88 | |
| PRK09722 | 227 | allulose-6-phosphate 3-epimerase; Provisional | 95.64 | |
| TIGR00693 | 210 | thiE thiamine-phosphate pyrophosphorylase; InterPro: IP | 95.53 | |
| pfam02219 | 286 | MTHFR Methylenetetrahydrofolate reductase. This family | 95.16 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost | 94.68 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate decarboxy | 93.49 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino acid t | 92.63 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.95 | |
| PRK08508 | 279 | biotin synthase; Provisional | 91.26 | |
| TIGR01212 | 307 | TIGR01212 radical SAM protein, TIGR01212 family; InterP | 90.12 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family of arc | 99.47 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a struc | 99.32 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of the n | 99.17 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) reduc | 99.14 | |
| PRK06843 | 404 | inositol-5-monophosphate dehydrogenase; Validated | 98.75 | |
| TIGR00736 | 234 | nifR3_rel_arch TIM-barrel protein, putative; InterPro: | 98.71 | |
| PRK13117 | 268 | consensus | 98.57 | |
| PRK01033 | 253 | imidazole glycerol phosphate synthase subunit HisF; Pro | 98.54 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisional | 98.49 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric enzyme | 98.48 | |
| PRK13127 | 262 | consensus | 98.47 | |
| PRK13139 | 254 | consensus | 98.46 | |
| PRK13135 | 267 | consensus | 98.41 | |
| PRK13116 | 278 | consensus | 98.4 | |
| pfam05690 | 246 | ThiG Thiazole biosynthesis protein ThiG. This family co | 98.39 | |
| PRK13123 | 256 | consensus | 98.36 | |
| pfam00290 | 258 | Trp_syntA Tryptophan synthase alpha chain. | 98.36 | |
| PRK00208 | 256 | thiG thiazole synthase; Reviewed | 98.32 | |
| PRK13121 | 265 | consensus | 98.3 | |
| PRK13120 | 285 | consensus | 98.27 | |
| PRK13111 | 256 | trpA tryptophan synthase subunit alpha; Provisional | 98.25 | |
| PRK13134 | 257 | consensus | 98.23 | |
| PRK13138 | 264 | consensus | 98.23 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.23 | |
| PRK11840 | 327 | bifunctional sulfur carrier protein/thiazole synthase p | 98.22 | |
| PRK13132 | 246 | consensus | 98.21 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) a | 98.2 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. This c | 98.16 | |
| PRK13114 | 266 | consensus | 98.13 | |
| PRK13133 | 267 | consensus | 98.11 | |
| PRK13140 | 257 | consensus | 98.07 | |
| PRK13124 | 257 | consensus | 98.06 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid transp | 98.05 | |
| PRK13136 | 253 | consensus | 98.02 | |
| PRK13586 | 231 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 97.88 | |
| PRK13112 | 279 | consensus | 97.83 | |
| pfam00218 | 254 | IGPS Indole-3-glycerol phosphate synthase. | 97.65 | |
| pfam03437 | 254 | BtpA BtpA family. The BtpA protein is tightly associate | 97.57 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthesis [N | 97.34 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/trypt | 97.32 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); an en | 97.11 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase; InterPr | 97.11 | |
| PRK00278 | 261 | trpC indole-3-glycerol-phosphate synthase; Reviewed | 97.0 | |
| PRK03620 | 296 | 5-dehydro-4-deoxyglucarate dehydratase; Provisional | 96.78 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also call | 96.77 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family belong | 96.68 | |
| PRK07028 | 429 | bifunctional hexulose-6-phosphate synthase/ribonuclease | 96.65 | |
| pfam00834 | 201 | Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. T | 96.38 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.29 | |
| TIGR01108 | 616 | oadA oxaloacetate decarboxylase alpha subunit; InterPro | 95.2 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function pred | 94.63 | |
| pfam09370 | 268 | TIM-br_sig_trns TIM-barrel signal transduction protein. | 94.54 | |
| KOG4175 | 268 | consensus | 93.35 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.17 | |
| pfam03060 | 330 | NPD 2-nitropropane dioxygenase. Members of this family | 99.24 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase [Gen | 98.82 | |
| PRK13126 | 237 | consensus | 98.47 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.31 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the D | 98.16 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide transpo | 98.1 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino acid t | 98.02 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this family | 98.02 | |
| pfam01791 | 231 | DeoC DeoC/LacD family aldolase. This family includes di | 97.92 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carboxami | 97.89 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I aldolas | 97.87 | |
| PRK02747 | 257 | consensus | 97.77 | |
| PRK07107 | 497 | inositol-5-monophosphate dehydrogenase; Validated | 97.74 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole carb | 97.73 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino acid t | 97.7 | |
| PRK02145 | 257 | consensus | 97.69 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fold [G | 97.67 | |
| TIGR01302 | 476 | IMP_dehydrog inosine-5'-monophosphate dehydrogenase; In | 97.63 | |
| PRK01659 | 252 | consensus | 97.59 | |
| PRK04281 | 254 | consensus | 97.53 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. This c | 97.47 | |
| PRK13586 | 231 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 97.45 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 97.41 | |
| PRK00830 | 273 | consensus | 97.4 | |
| PRK00748 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 97.39 | |
| PRK05283 | 258 | deoxyribose-phosphate aldolase; Provisional | 97.17 | |
| TIGR00007 | 241 | TIGR00007 phosphoribosylformimino-5-aminoimidazole carb | 97.16 | |
| PRK07695 | 202 | transcriptional regulator TenI; Provisional | 97.09 | |
| ), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00735">TIGR00735 | 312 | hisF imidazoleglycerol phosphate synthase, cyclase subu | 97.03 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.01 | |
| PTZ00314 | 499 | inosine-5'-monophosphate dehydrogenase; Provisional | 96.92 | |
| pfam00478 | 467 | IMPDH IMP dehydrogenase / GMP reductase domain. This fa | 96.9 | |
| PRK05567 | 486 | inositol-5'-monophosphate dehydrogenase; Reviewed | 96.71 | |
| PRK00043 | 210 | thiE thiamine-phosphate pyrophosphorylase; Reviewed | 96.7 | |
| pfam01070 | 301 | FMN_dh FMN-dependent dehydrogenase. | 96.55 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dep | 96.34 | |
| TIGR01919 | 246 | hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR | 96.19 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 95.98 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | 95.45 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synthase) | 95.38 | |
| PRK07807 | 479 | inositol-5-monophosphate dehydrogenase; Validated | 95.16 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 94.8 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme metaboli | 94.74 | |
| KOG2550 | 503 | consensus | 94.71 | |
| pfam02581 | 180 | TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine | 94.65 | |
| PRK01130 | 222 | N-acetylmannosamine-6-phosphate 2-epimerase; Provisiona | 94.56 | |
| PRK08649 | 368 | inositol-5-monophosphate dehydrogenase; Validated | 94.42 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. | 94.26 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 92.11 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and h | 91.86 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminator (mR | 91.85 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 91.74 | |
| PRK09282 | 580 | pyruvate carboxylase subunit B; Validated | 91.11 | |
| TIGR00734 | 230 | hisAF_rel hisA/hisF family protein; InterPro: IPR004650 | 90.72 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding | 90.37 | |
| pfam00478 | 467 | IMPDH IMP dehydrogenase / GMP reductase domain. This fa | 99.06 | |
| PRK05567 | 486 | inositol-5'-monophosphate dehydrogenase; Reviewed | 98.74 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazole car | 98.22 | |
| TIGR00007 | 241 | TIGR00007 phosphoribosylformimino-5-aminoimidazole carb | 98.17 | |
| PRK07807 | 479 | inositol-5-monophosphate dehydrogenase; Validated | 98.15 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (NanE) c | 98.05 | |
| PRK01130 | 222 | N-acetylmannosamine-6-phosphate 2-epimerase; Provisiona | 97.97 | |
| pfam04131 | 192 | NanE Putative N-acetylmannosamine-6-phosphate epimerase | 97.16 | |
| KOG2550 | 503 | consensus | 97.07 | |
| PRK06552 | 209 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 96.68 | |
| PRK07455 | 210 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 96.57 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family belong | 96.55 | |
| pfam01081 | 196 | Aldolase KDPG and KHG aldolase. This family includes th | 96.52 | |
| PRK08904 | 207 | consensus | 96.51 | |
| PRK08104 | 212 | consensus | 96.38 | |
| PRK07114 | 223 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 96.35 | |
| PRK06015 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 95.93 | |
| PRK08782 | 219 | consensus | 95.42 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), methy | 92.83 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding domain. | 98.84 | |
| PTZ00314 | 499 | inosine-5'-monophosphate dehydrogenase; Provisional | 98.73 | |
| PRK08227 | 291 | aldolase; Validated | 91.64 | |
| PRK07226 | 266 | fructose-bisphosphate aldolase; Provisional | 90.45 | |
| PRK13137 | 266 | consensus | 98.48 | |
| TIGR01768 | 242 | GGGP-family geranylgeranylglyceryl phosphate synthase f | 97.96 | |
| TIGR01304 | 376 | IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro | 97.93 | |
| PRK07107 | 497 | inositol-5-monophosphate dehydrogenase; Validated | 97.81 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Review | 97.74 | |
| TIGR01302 | 476 | IMP_dehydrog inosine-5'-monophosphate dehydrogenase; In | 97.73 | |
| PRK04169 | 229 | geranylgeranylglyceryl phosphate synthase-like protein; | 97.69 | |
| PRK05211 | 248 | consensus | 97.62 | |
| PRK07455 | 210 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 97.59 | |
| PRK13597 | 252 | imidazole glycerol phosphate synthase subunit HisF; Pro | 97.55 | |
| PRK06552 | 209 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 97.54 | |
| pfam01081 | 196 | Aldolase KDPG and KHG aldolase. This family includes th | 97.5 | |
| pfam01884 | 231 | PcrB PcrB family. This family contains proteins that ar | 97.36 | |
| pfam00977 | 229 | His_biosynth Histidine biosynthesis protein. Proteins i | 97.11 | |
| PRK07114 | 223 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 97.08 | |
| PRK06857 | 209 | consensus | 97.07 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohy | 97.07 | |
| PRK02615 | 345 | thiamine-phosphate pyrophosphorylase; Provisional | 97.03 | |
| TIGR00674 | 288 | dapA dihydrodipicolinate synthase; InterPro: IPR005263 | 96.92 | |
| PRK09427 | 459 | bifunctional indole-3-glycerol phosphate synthase/phosp | 96.77 | |
| PRK06015 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 96.75 | |
| PRK08104 | 212 | consensus | 96.69 | |
| PRK08904 | 207 | consensus | 96.64 | |
| PRK08782 | 219 | consensus | 96.63 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine monoph | 96.62 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphoglucon | 96.58 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, | 95.98 | |
| PRK04180 | 293 | pyridoxine biosynthesis protein; Provisional | 95.95 | |
| KOG0399 | 2142 | consensus | 95.83 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohy | 95.61 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (P | 95.5 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolis | 95.23 | |
| KOG1606 | 296 | consensus | 94.93 | |
| pfam04309 | 174 | G3P_antiterm Glycerol-3-phosphate responsive antitermin | 94.55 | |
| KOG4201 | 289 | consensus | 94.22 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 93.4 | |
| TIGR00343 | 298 | TIGR00343 pyridoxine biosynthesis protein; InterPro: IP | 92.21 | |
| TIGR01303 | 476 | IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro | 91.3 | |
| KOG1799 | 471 | consensus | 97.74 | |
| KOG0564 | 590 | consensus | 94.43 | |
| TIGR01464 | 351 | hemE uroporphyrinogen decarboxylase; InterPro: IPR00636 | 92.8 | |
| PRK02621 | 254 | consensus | 97.6 | |
| PRK01033 | 253 | imidazole glycerol phosphate synthase subunit HisF; Pro | 97.47 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF; Pro | 97.46 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phosphate | 97.38 | |
| PRK03220 | 257 | consensus | 97.35 | |
| PRK13585 | 240 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 97.15 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazole car | 96.97 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 96.66 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole carb | 96.58 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 96.18 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carboxami | 95.84 | |
| PRK09517 | 738 | multifunctional thiamine-phosphate pyrophosphorylase/sy | 93.23 | |
| PRK06843 | 404 | inositol-5-monophosphate dehydrogenase; Validated | 96.97 | |
| TIGR00674 | 288 | dapA dihydrodipicolinate synthase; InterPro: IPR005263 | 95.17 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydra | 96.89 | |
| TIGR01769 | 212 | GGGP geranylgeranylglyceryl phosphate synthase; InterPr | 96.79 | |
| PRK06267 | 324 | hypothetical protein; Provisional | 95.02 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (NanE) c | 93.71 | |
| TIGR01361 | 262 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldo | 91.2 |
| >TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=773.27 Aligned_cols=349 Identities=44% Similarity=0.697 Sum_probs=335.4 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHC Q ss_conf 999999975089678899999999620--------111046788963116888733599748534688867798887403 Q gi|254780434|r 6 HKLALRGLTHLDPEIAHHLSIVALKSG--------LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKL 77 (362) Q Consensus 6 ~~~~~~~l~~~~pe~ah~~~~~~~~~~--------~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~ 77 (362) T Consensus 1 Y~Lvr~~lF~lDpE~AH~~~~~~Lr~~~~~~F~~~L~r~~~~~~~P~L~~~vlG~~FpNPlGLAAGfDK~G~a~d~l~Am 80 (370) T TIGR01036 1 YPLVRKLLFLLDPEKAHELVFQVLRLVAASPFLARLLRSLLGAKDPVLEVTVLGLKFPNPLGLAAGFDKDGEALDALGAM 80 (370) T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHHHHHH T ss_conf 95210141589977889999999864125640345578646888788643123410686133423799876699875641 Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH--------HHHCCCCCCEEECCCC--CH Q ss_conf 6752410200136878998862688425554100002477777889998764--------1000121000110454--24 Q gi|254780434|r 78 GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK--------IQPTSPIGINLGANKD--SK 147 (362) Q Consensus 78 G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~--------~~~~~pi~vsI~~~~~--s~ 147 (362) T Consensus 81 GFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~liNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~ 160 (370) T TIGR01036 81 GFGYLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAE 160 (370) T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH T ss_conf 84247541205888667777864254557887632052056799999999986545420278985264324888666544 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899 Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362) Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362) T Consensus 161 ~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgLR~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~ 240 (370) T TIGR01036 161 DAKEDYKACLRKVGPLADYLVVNVSSPNTPGLRDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLD 240 (370) T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH T ss_conf 22668999999873210707886358897351324014358999999999999999861278857897268988213899 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC-CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH Q ss_conf 999876449829998066555323-4577544-63221135645424689999999740897489996788999999999 Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNH-EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362) Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~-~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362) T Consensus 241 IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~Ek 320 (370) T TIGR01036 241 IADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEK 320 (370) T ss_pred HHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH T ss_conf 99999871898489844510252002563214356789887514477899999999996495789962785747889999 Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf 9839997545278770697899999999999999838997789616975 Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362) Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362) T Consensus 321 I~AGASLlQ~YsgfIy~GP~l~k~i~~~i~~lL~~~GFgsv~eAiGad~ 369 (370) T TIGR01036 321 IKAGASLLQIYSGFIYKGPPLVKEIVKEIEKLLKEDGFGSVKEAIGADR 369 (370) T ss_pred HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC T ss_conf 9847124456423466771679999999999975179612244102356 |
3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=711.19 Aligned_cols=330 Identities=51% Similarity=0.850 Sum_probs=308.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCC Q ss_conf 8999999997508967889999999962011---1046788963116888733599748534688867798887403675 Q gi|254780434|r 4 ILHKLALRGLTHLDPEIAHHLSIVALKSGLL---SFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFG 80 (362) Q Consensus 4 ~~~~~~~~~l~~~~pe~ah~~~~~~~~~~~~---~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G 80 (362) T Consensus 1 ~y~~~~~pll~~ldpE~aH~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~Gl~f~nPiGLAAGfDKn~e~~~~l~~lGFG 80 (336) T PRK05286 1 MYYPLLRPLLFKLDPERAHELTIRALKRAGRTLLARLLRYKDPRLPVTVMGLTFPNPVGLAAGFDKNGEAIDALGALGFG 80 (336) T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCEECCCCCEECCCCCCCCCCCCCHHHCCCC T ss_conf 91899999997699899999999999986135772431589866676888854699675556789997103726656866 Q ss_pred EEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHH Q ss_conf 2410200136878998862688425554100002477777889998764100-01210001104542--46788776555 Q gi|254780434|r 81 FVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGI 157 (362) Q Consensus 81 ~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~ 157 (362) T Consensus 81 fvEvGTVT~~pq~GNpkPR~fRl~~~~aliNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~ 160 (336) T PRK05286 81 FVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICL 160 (336) T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 69970516998799999717981377637850577986899999999850567886589976237884166899999999 Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 42067552698303336532211000023432111122444556553126885178650577774888999998764498 Q gi|254780434|r 158 RLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKV 237 (362) Q Consensus 158 ~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~ 237 (362) T Consensus 161 ~~l~~~aDy~~INiSsPNT~glr~lq~~~~L~~ll~~v~~~~~~----~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~i 236 (336) T PRK05286 161 RKLYPYADYFTVNISSPNTPGLRDLQAGEALDELLAALKEAQAE----LGKYVPLLLKIAPDLSDEELDDIADLALEHGI 236 (336) T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC T ss_conf 99826377899975689986520004669999999999999984----37888648832888887899999999998198 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECH Q ss_conf 29998066555323457754463221135645424689999999740897489996788999999999983999754527 Q gi|254780434|r 238 EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362) Q Consensus 238 dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362) T Consensus 237 dGii~tNTt~~r~~l~-~~~~~~~GGLSG~pl~~~s~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyT 315 (336) T PRK05286 237 DGIIATNTTLDRSGLE-GPNAEEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYS 315 (336) T ss_pred CEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHH T ss_conf 6899958867664456-655566687464067899999999999973999709998998999999999986996887416 Q ss_pred HHHCCCHHHHHHHHHHHHHHH Q ss_conf 877069789999999999999 Q gi|254780434|r 318 AMIYEGISLPKRIIQGLSDFL 338 (362) Q Consensus 318 ali~~Gp~~~~~I~~~L~~~l 338 (362) T Consensus 316 gliy~GP~lv~~I~~~L~~lL 336 (336) T PRK05286 316 GLIYEGPGLVKEIVRGLARLL 336 (336) T ss_pred HHHHCCHHHHHHHHHHHHHHC T ss_conf 787219079999999999759 |
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=695.02 Aligned_cols=321 Identities=54% Similarity=0.836 Sum_probs=301.5 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCC Q ss_conf 999750896788999999996201110---46788963116888733599748534688867798887403675241020 Q gi|254780434|r 10 LRGLTHLDPEIAHHLSIVALKSGLLSF---FPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGT 86 (362) Q Consensus 10 ~~~l~~~~pe~ah~~~~~~~~~~~~~~---~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~kt 86 (362) T Consensus 1 rp~l~~l~pE~aH~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~Gl~f~nPiGlAAGfDKn~~~~~~~~~lGfGfvevGT 80 (327) T cd04738 1 RPLLFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAEAIDALLALGFGFVEVGT 80 (327) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHHHCCCCEEEECC T ss_conf 98011499799999999999850647640103689966556888755699586545889885899999966986799714 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHHHHHCCC Q ss_conf 0136878998862688425554100002477777889998764100-01210001104542--46788776555420675 Q gi|254780434|r 87 VTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGIRLFFTI 163 (362) Q Consensus 87 it~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~ 163 (362) T Consensus 81 VT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~ 160 (327) T cd04738 81 VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY 160 (327) T ss_pred CCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC T ss_conf 36888889999857974675401100458717699999999840456871799985047882676899999999985355 Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 52698303336532211000023432111122444556553126885178650577774888999998764498299980 Q gi|254780434|r 164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS 243 (362) Q Consensus 164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~ 243 (362) T Consensus 161 aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~----~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~t 236 (327) T cd04738 161 ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327) T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 778999546889845100268899999999999999853----7788669981799766789999999997399789995 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC Q ss_conf 66555323457754463221135645424689999999740897489996788999999999983999754527877069 Q gi|254780434|r 244 NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362) Q Consensus 244 NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362) T Consensus 237 NTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy~G 316 (327) T cd04738 237 NTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEG 316 (327) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 88555421245655566686364067899999999999974999819998897999999999986996998768989319 Q ss_pred HHHHHHHHHHH Q ss_conf 78999999999 Q gi|254780434|r 324 ISLPKRIIQGL 334 (362) Q Consensus 324 p~~~~~I~~~L 334 (362) T Consensus 317 P~li~~I~~~L 327 (327) T cd04738 317 PGLVKRIKREL 327 (327) T ss_pred CHHHHHHHHHC T ss_conf 06999998219 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >KOG1436 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=637.30 Aligned_cols=347 Identities=49% Similarity=0.768 Sum_probs=326.3 Q ss_pred HHH-HHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEE Q ss_conf 999-999997508-967889999999962011104678896311688873359974853468886779888740367524 Q gi|254780434|r 5 LHK-LALRGLTHL-DPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFV 82 (362) Q Consensus 5 ~~~-~~~~~l~~~-~pe~ah~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v 82 (362) T Consensus 42 f~~~~~mp~~~~lld~E~sHrlAv~aas~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfdk~~eaidgL~~~gfG~i 121 (398) T KOG1436 42 FYARIVMPPFHALLDPEFSHRLAVLAASWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLANSGFGFI 121 (398) T ss_pred EEEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCEE T ss_conf 55333124166407977777999999771777510057865224677401026830132135754688888874787649 Q ss_pred ECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH----H--CCCCCCEEECCCCCHHHHHHHHHH Q ss_conf 1020013687899886268842555410000247777788999876410----0--012100011045424678877655 Q gi|254780434|r 83 EIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ----P--TSPIGINLGANKDSKDFILDYVSG 156 (362) Q Consensus 83 ~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~----~--~~pi~vsI~~~~~s~~~~~dy~~~ 156 (362) T Consensus 122 eigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~g 201 (398) T KOG1436 122 EIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEG 201 (398) T ss_pred EECCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH T ss_conf 95465457878999985686265423001057884249999999998887317886532105623465774567889987 Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 54206755269830333653221100002343211112244455655312688517865057777488899999876449 Q gi|254780434|r 157 IRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHK 236 (362) Q Consensus 157 ~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g 236 (362) T Consensus 202 V~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~--~~~~~pvl~kiapDL~~~el~dia~v~kk~~ 279 (398) T KOG1436 202 VRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLP--LGKKPPVLVKIAPDLSEKELKDIALVVKKLN 279 (398) T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 65124546658995569998662655327789999999999886045--6889865888565242778989999999837 Q ss_pred CCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE Q ss_conf 8299980665553-234577544632211356454246899999997408974899967889999999999839997545 Q gi|254780434|r 237 VEGIIVSNTTLSR-KGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQL 315 (362) Q Consensus 237 ~dGiv~~NT~~~~-~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi 315 (362) T Consensus 280 idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQl 359 (398) T KOG1436 280 IDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQL 359 (398) T ss_pred CCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHH T ss_conf 56366138566247101016664356887898663668999999998636887468416856547699998627139988 Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC Q ss_conf 27877069789999999999999983899778961697 Q gi|254780434|r 316 YSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362) Q Consensus 316 ~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362) T Consensus 360 yTal~yeGp~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398) T KOG1436 360 YTALVYEGPAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC T ss_conf 88776267435889998899999750777398860577 |
|
| >pfam01070 FMN_dh FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-15 Score=120.63 Aligned_cols=259 Identities=24% Similarity=0.288 Sum_probs=160.0 Q ss_pred HHHHHHHHHHHHH-HHHHHCC-CCCCCCCCEEEECCEECCCCEEECC----C-CCCCHH--HHHHHHHCCCCEEECCCCC Q ss_conf 6788999999996-2011104-6788963116888733599748534----6-888677--9888740367524102001 Q gi|254780434|r 18 PEIAHHLSIVALK-SGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAE--VPIELLKLGFGFVEIGTVT 88 (362) Q Consensus 18 pe~ah~~~~~~~~-~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~--~~~~l~~~G~G~v~~ktit 88 (362) T Consensus 18 ~e~t~~~N~~af~~~~l~pr~L~dv~~~d~st~~lG~~~~~Pi~iap~g~~~l~~~~ge~~lAraA~~~gi~~~ls-s~~ 96 (301) T pfam01070 18 DEITLRRNRAAFDRIRLRPRVLRDVSDRDTSTTLLGQRLSLPFGIAPTGMQGLAHPDGELALARAAAAAGIPFVLS-TVA 96 (301) T ss_pred CCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCHHHHCCCCHHHHHHHHHHHHCCCEECC-CCC T ss_conf 5299999999998370676445788778884357883167876787401022137645899999999835870046-876 Q ss_pred CCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 36878998862688425554100002477777889998764100012100011045424678877655542067552698 Q gi|254780434|r 89 PHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFT 168 (362) Q Consensus 89 ~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iE 168 (362) T Consensus 97 ----------------------------~~~~e~i~----~~~-~~~~~fQly~~~-d~~~~~~~i~ra~~a--g~~al~ 140 (301) T pfam01070 97 ----------------------------STSLEEVA----AAA-GGPLWFQLYVPK-DRELTEDLLERAEAA--GYKALV 140 (301) T ss_pred ----------------------------CCCHHHHH----HHC-CCCEEEEEEECC-CHHHHHHHHHHHHHC--CCCEEE T ss_conf ----------------------------55527889----857-997689987458-889999999999974--999799 Q ss_pred EECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 303336532211--00002343211112244455655312688517865--05777748889999987644982999806 Q gi|254780434|r 169 INISSPNTPGLR--SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362) Q Consensus 169 iNiSCPNt~g~~--~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362) T Consensus 141 ltvD~~~~-g~r~~d~r~~~----~i---------~~l~~~~~~PvivKGI~s--------~eDA~~a~~~Gv~~I~VSn 198 (301) T pfam01070 141 LTVDTPVL-GNRERDLRNGD----DL---------AWLRDQWKGPLVLKGILS--------PEDAKRAVEAGVDGIVVSN 198 (301) T ss_pred EECCCCCC-CCCCCCCCCHH----HH---------HHHHHHCCCCEEEECCCC--------HHHHHHHHHCCCCEEEECC T ss_conf 97268765-77853204399----99---------999986699889982899--------9999999985999999649 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-- Q ss_conf 655532345775446322113564542468999999974089748999678899999999998399975452787706-- Q gi|254780434|r 245 TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-- 322 (362) Q Consensus 245 T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-- 322 (362) T Consensus 199 HG-G---------RqlD~-------~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGRp~l~ala 261 (301) T pfam01070 199 HG-G---------RQLDG-------APATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLA 261 (301) T ss_pred CC-C---------CCCCC-------CCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 98-5---------44688-------8679999999999856774899638747626899999808986655689999999 Q ss_pred --CH----HHHHHHHHHHHHHHHHCCCCCHHHHHCC Q ss_conf --97----8999999999999998389977896169 Q gi|254780434|r 323 --GI----SLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362) Q Consensus 323 --Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362) T Consensus 262 ~~G~~Gv~~~l~~l~~El~~~M~l~G~~~i~~l~~~ 297 (301) T pfam01070 262 AGGEAGVAHALEILRDELERTMALLGCTSIADLTPS 297 (301) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH T ss_conf 657999999999999999999998589997895998 |
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-15 Score=120.95 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=161.5 Q ss_pred CHHHHHHHHHHHHH-HHHHHC-CCCCCCCCCEEEECCEECCCCEEECC----C-CCCCHHH--HHHHHHCCCCEEECCCC Q ss_conf 96788999999996-201110-46788963116888733599748534----6-8886779--88874036752410200 Q gi|254780434|r 17 DPEIAHHLSIVALK-SGLLSF-FPVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAEV--PIELLKLGFGFVEIGTV 87 (362) Q Consensus 17 ~pe~ah~~~~~~~~-~~~~~~-~~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~~--~~~l~~~G~G~v~~kti 87 (362) T Consensus 24 ~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~GE~~~AraA~~~gi~~~lSt-- 101 (299) T cd02809 24 GDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLST-- 101 (299) T ss_pred CCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHHHHCCCEECCC-- T ss_conf 744999999999983647740134887788766678976889768885220125678726999999997056431137-- Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEE Q ss_conf 13687899886268842555410000247777788999876410001210001104542467887765554206755269 Q gi|254780434|r 88 TPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYF 167 (362) Q Consensus 88 t~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~i 167 (362) T Consensus 102 -------------------------~--ss~slEei~~~~----~-~~~wfQLY~~~-d~~~~~~li~rA~~a--G~~al 146 (299) T cd02809 102 -------------------------V--STTSLEEVAAAA----P-GPRWFQLYVPR-DREITEDLLRRAEAA--GYKAL 146 (299) T ss_pred -------------------------C--CCCCHHHHHHHC----C-CCEEEEEECCC-CHHHHHHHHHHHHHC--CCCEE T ss_conf -------------------------6--656689999744----8-98467764369-999999999999985--99989 Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 830333653221100002343211112244455655312688517865--057777488899999876449829998066 Q gi|254780434|r 168 TINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSNT 245 (362) Q Consensus 168 EiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT 245 (362) T Consensus 147 ~lTvD~p~~g-~R---------------~~w~~i~~l~~~~~~p~i~KGi~~~--------~DA~~a~~~G~dgI~VSNH 202 (299) T cd02809 147 VLTVDTPVLG-RR---------------LTWDDLAWLRSQWKGPLILKGILTP--------EDALRAVDAGADGIVVSNH 202 (299) T ss_pred EEECCCCCCC-CC---------------CCHHHHHHHHHHCCCCEEEECCCCH--------HHHHHHHHCCCCEEEECCC T ss_conf 9970589878-87---------------9999999999866998799727889--------9999999859988997288 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC--- Q ss_conf 55532345775446322113564542468999999974089748999678899999999998399975452787706--- Q gi|254780434|r 246 TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE--- 322 (362) Q Consensus 246 ~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~--- 322 (362) T Consensus 203 G----------GRqlD~-------~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~l~~ 265 (299) T cd02809 203 G----------GRQLDG-------APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299) T ss_pred C----------CCCCCC-------CCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHH T ss_conf 7----------333688-------87789999999998546728997188475368999997699889877899999885 Q ss_pred -CH----HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf -97----89999999999999983899778961 Q gi|254780434|r 323 -GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 323 -Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 266 ~G~~Gv~~~~~~l~~El~~~M~l~G~~~i~~l~ 298 (299) T cd02809 266 GGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 449999999999999999999984899877779 |
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-14 Score=114.63 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=164.4 Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEEC--CCC Q ss_conf 78899999999-62011104-678896311688873359974853----46-8886779--88874036752410--200 Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEI--GTV 87 (362) Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~--kti 87 (362) T Consensus 26 e~Tl~~N~~Af~~~~l~Pr~L~dvs~~dtst~l~G~~~~~P~~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~ 105 (344) T cd02922 26 EITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC 105 (344) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 49999999999847676533248888988556898336775156647776432884569999999974886574057778 Q ss_pred CCCCC-CCCC--CCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC Q ss_conf 13687-8998--86268842555410000247777-78899987641000121000110454246788776555420675 Q gi|254780434|r 88 TPHPQ-AGNP--RPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTI 163 (362) Q Consensus 88 t~~p~-~GNp--~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~ 163 (362) T Consensus 106 slEdVa~a~~~~~~~wfQLY~---------~~dr~~~~~li~RA~~aG~~-alvlTvD~p~~G~-R~rd~r~~~~~~~~~ 174 (344) T cd02922 106 SLEEIVDARPPDQPLFFQLYV---------NKDRTKTEELLKRAEKLGAK-AIFLTVDAPVLGK-RERDERLKAEEAVSD 174 (344) T ss_pred CHHHHHHHCCCCCCEEEEEEC---------CCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCC-CHHHHHCCCCCCCCC T ss_conf 889999865689866999824---------77679999999999986998-8999567888775-226665077778876 Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 5269830333653221100002343211112244455655312688517865--05777748889999987644982999 Q gi|254780434|r 164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGII 241 (362) Q Consensus 164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv 241 (362) T Consensus 175 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~tw~di~~lr~~~~~plivKGIl~~--------~DA~~A~~~G~dgIi 239 (344) T cd02922 175 GPAGKKTKAKGG-------GAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTV--------EDAVLAAEYGVDGIV 239 (344) T ss_pred CCCCCCCCCCCC-------HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCH--------HHHHHHHHCCCCEEE T ss_conf 654333344663-------16677775048889999999999866997010025779--------999999965998899 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 80665553234577544632211356454246899999997---408974899967889999999999839997545278 Q gi|254780434|r 242 VSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ---RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362) Q Consensus 242 ~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~---~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362) T Consensus 240 VSNH----------GGRqLD~-------~~~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~G~DV~KAlALGA~aV~iGRp 302 (344) T cd02922 240 LSNH----------GGRQLDT-------APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRP 302 (344) T ss_pred EECC----------CCCCCCC-------CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHH T ss_conf 7188----------6212578-------8318999899999889858870899718857578999999769998976789 Q ss_pred HHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 7706----97----89999999999999983899778961 Q gi|254780434|r 319 MIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 319 li~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 303 ~l~gla~~G~~Gv~~~l~il~~El~~~M~l~G~~si~~l~ 342 (344) T cd02922 303 FLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLG 342 (344) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 9999884439999999999999999999985899888749 |
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-13 Score=109.29 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=165.1 Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEECC----C-CCCCHHH--HHHHHHCCCCEEEC--CCC Q ss_conf 78899999999-62011104-6788963116888733599748534----6-8886779--88874036752410--200 Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAEV--PIELLKLGFGFVEI--GTV 87 (362) Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~~--~~~l~~~G~G~v~~--kti 87 (362) T Consensus 34 e~t~~~N~~af~~~~l~PrvL~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~hp~gE~~~AraA~~~gi~~~lSt~s~~ 113 (351) T cd04737 34 EWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNT 113 (351) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 29999999999847175533458777988435788025776265538874044684789999999975986340567777 Q ss_pred CCCC--CCCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 1368--7899886268842555410000247777-788999876410001210001104542467887765554206755 Q gi|254780434|r 88 TPHP--QAGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIA 164 (362) Q Consensus 88 t~~p--~~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~a 164 (362) T Consensus 114 s~Eeia~a~~~~~~wfQLY~---------~~dr~~~~~li~RA~~aG~~-alvlTVD~p~~g~-Rerd~r~---~~---- 175 (351) T cd04737 114 SLEEIAKASNGGPKWFQLYM---------SKDDGFNRSLLDRAKAAGAK-AIILTADATVGGN-READIRN---KF---- 175 (351) T ss_pred CHHHHHHHCCCCCEEEEEEC---------CCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCC-CHHHHHC---CC---- T ss_conf 89999974679970899713---------58879999999999986999-8999631788786-2778862---99---- Q ss_pred CEEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 269830333653221----100002343211112244455655312688517865--05777748889999987644982 Q gi|254780434|r 165 SYFTINISSPNTPGL----RSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVE 238 (362) Q Consensus 165 D~iEiNiSCPNt~g~----~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~d 238 (362) T Consensus 176 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~di~~lr~~~~lplilKGI~~~--------eDA~~A~~~G~d 244 (351) T cd04737 176 ---QFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSP--------EDADVAINAGAD 244 (351) T ss_pred ---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCH--------HHHHHHHHCCCC T ss_conf ---889998722344677755555688988632579989999999864998532366779--------999999874998 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278 Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362) Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362) T Consensus 245 gIvVSNH----------GGRQLD~-------~p~~i~~LpeI~~av~~~~~V~~DgGIR~G~DV~KALALGA~aV~iGRp 307 (351) T cd04737 245 GIWVSNH----------GGRQLDG-------GPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRP 307 (351) T ss_pred EEEECCC----------CCCCCCC-------CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHH T ss_conf 8997787----------5123567-------6047889999999866896499769867468999999769988975789 Q ss_pred HHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHHC Q ss_conf 7706----97----899999999999999838997789616 Q gi|254780434|r 319 MIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIRG 351 (362) Q Consensus 319 li~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG 351 (362) T Consensus 308 ~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~dl~~ 348 (351) T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348 (351) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC T ss_conf 99988713389999999999999999999868999888490 |
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-13 Score=107.10 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=166.8 Q ss_pred HHHHHHHHHHHH-HHHHHCC-CCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEECC--CC Q ss_conf 788999999996-2011104-678896311688873359974853----46-8886779--888740367524102--00 Q gi|254780434|r 19 EIAHHLSIVALK-SGLLSFF-PVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEIG--TV 87 (362) Q Consensus 19 e~ah~~~~~~~~-~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~k--ti 87 (362) T Consensus 47 e~tl~~N~~af~~~~l~PRvL~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~ 126 (383) T cd03332 47 ESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS 126 (383) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCC T ss_conf 69999999999855776711358888888645798156777388778774414897789999999983586220577678 Q ss_pred CCCCC-CCC-CCCCEEEEE--CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEE----CCCCCH-----------H Q ss_conf 13687-899-886268842--5554100002477777889998764100012100011----045424-----------6 Q gi|254780434|r 88 TPHPQ-AGN-PRPRVFRLT--KDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLG----ANKDSK-----------D 148 (362) Q Consensus 88 t~~p~-~GN-p~PR~~r~~--~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~----~~~~s~-----------~ 148 (362) T Consensus 127 slEeva~~~~~~~~wfQLY~~~Dr~~----------~~~ll~RA~~aG~~-aLvlTVD~Pv~G~Rerd~r~g~~P~~~~~ 195 (383) T cd03332 127 SIEDVAAAAGDAPRWFQLYWPKDDDL----------TESLLRRAEKAGYR-VLVVTLDTWSLGWRPRDLDLGYLPFLRGI 195 (383) T ss_pred CHHHHHHHCCCCCEEEEEECCCCHHH----------HHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHCCCCCCCCCH T ss_conf 89999986689963999951588899----------99999999973897-79992268666876545532688643303 Q ss_pred HHHHHHH---HHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHH Q ss_conf 7887765---554206755269830333653221100002343211112244455655312688517865--05777748 Q gi|254780434|r 149 FILDYVS---GIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEE 223 (362) Q Consensus 149 ~~~dy~~---~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~ 223 (362) T Consensus 196 ~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKGI~~~----- 264 (383) T cd03332 196 GIANYFSDPVFRKKLA---EPVGEDPEAPPPMEA---AVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILHP----- 264 (383) T ss_pred HHHHHCCCHHHHHHHC---CCCCCCCCCCCCCHH---HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCH----- T ss_conf 6777547889999732---567765456775014---59999985378889989999999876998532356899----- Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999 Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362) Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362) T Consensus 265 ---eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------apa~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~ 324 (383) T cd03332 265 ---DDARRAVEAGVDGVVVSNH----------GGRQVDG-------SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIM 324 (383) T ss_pred ---HHHHHHHHCCCCEEEEECC----------CCCCCCC-------CCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf ---9999999759988998078----------6344678-------8327899999999847998499979978679999 Q ss_pred HHHHCCCCEEEECHHHHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 9998399975452787706----97----89999999999999983899778961 Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 304 e~l~aGAs~VQi~Tali~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 325 KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~el~ 379 (383) T cd03332 325 KALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELT 379 (383) T ss_pred HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 9997699989877899998772319999999999999999999985899977859 |
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-13 Score=109.70 Aligned_cols=294 Identities=21% Similarity=0.282 Sum_probs=168.9 Q ss_pred HHHHHHHHHHH-HHHHHHC-CCCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEECC--CC Q ss_conf 78899999999-6201110-4678896311688873359974853----46-8886779--888740367524102--00 Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSF-FPVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEIG--TV 87 (362) Q Consensus 19 e~ah~~~~~~~-~~~~~~~-~~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~k--ti 87 (362) T Consensus 32 e~tl~~N~~af~~~~l~PRvL~dvs~~dtst~llG~~~~~P~~iaP~g~~~l~hp~gE~a~ArAA~~~gi~~~lSt~ss~ 111 (381) T PRK11197 32 EYTLRRNVEDLADIALRQRVLKNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC 111 (381) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCC T ss_conf 29999999999846175501468777888634788306777346757774167897579999999970771783277656 Q ss_pred CCCC-CCCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEE----CCCCCH---------HHHHH Q ss_conf 1368-7899886268842555410000247777-7889998764100012100011----045424---------67887 Q gi|254780434|r 88 TPHP-QAGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLG----ANKDSK---------DFILD 152 (362) Q Consensus 88 t~~p-~~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~----~~~~s~---------~~~~d 152 (362) T Consensus 112 slEeva~a~~~~~WfQLY~---------~~Dr~~~~~ll~RA~~aG~~-alvlTVD~pv~g~R~rd~rn~~~~p~~~~~~ 181 (381) T PRK11197 112 PIEEVAPAIKRPMWFQLYV---------LRDRGFMRNALERAKAAGCS-TLVFTVDMPVPGARYRDAHSGMSGPNAAMRR 181 (381) T ss_pred CHHHHHHHCCCCEEEEEEE---------CCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHCCCCCCCCCHHHH T ss_conf 7999986358973899841---------38889999999999984998-7998078887786655430677789812878 Q ss_pred HHHHHHHHCCCCCEEEEE-CCCC----CCCC----CCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCC Q ss_conf 765554206755269830-3336----5322----110000-2343211112244455655312688517865--05777 Q gi|254780434|r 153 YVSGIRLFFTIASYFTIN-ISSP----NTPG----LRSLQK-KKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDL 220 (362) Q Consensus 153 y~~~~~~~~~~aD~iEiN-iSCP----Nt~g----~~~~~~-~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~ 220 (362) T Consensus 182 ~~~~~~~--P~-w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plvlKGIl~~-- 256 (381) T PRK11197 182 YLQAVTH--PQ-WAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIREFWDGPMVIKGILDP-- 256 (381) T ss_pred HHHHHCC--CH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCH-- T ss_conf 9988648--17-877633447886544310013776558889999875058889999999999872997678525889-- Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899967889999 Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362) Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362) T Consensus 257 ------eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------apa~i~~LpeI~~aV~~~~~V~~DgGiRrG~ 313 (381) T PRK11197 257 ------EDARDAVRFGADGIVVSNH----------GGRQLDG-------VLSSARALPAIADAVKGDIAILADSGIRNGL 313 (381) T ss_pred ------HHHHHHHHCCCCEEEEECC----------CCCCCCC-------CCCHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf ------9999999669988999577----------6321567-------8448999999999867897399968978668 Q ss_pred HHHHHHHCCCCEEEECHHHHCC----C---H-HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 9999998399975452787706----9---7-89999999999999983899778961 Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIYE----G---I-SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 301 Da~e~l~aGAs~VQi~Tali~~----G---p-~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 314 DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~~i~~l~ 371 (381) T PRK11197 314 DVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEIT 371 (381) T ss_pred HHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 9999997699889767599998771338899999999999999999985899967879 |
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-11 Score=95.66 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=163.5 Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEECC-C----CCCCHH--HHHHHHHCCCCEEEC--CCC Q ss_conf 78899999999-62011104-6788963116888733599748534-6----888677--988874036752410--200 Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA-G----YDKNAE--VPIELLKLGFGFVEI--GTV 87 (362) Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa-G----~dk~~~--~~~~l~~~G~G~v~~--kti 87 (362) T Consensus 26 e~t~~~N~~af~~~~l~PrvL~dv~~~d~st~llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~ 105 (361) T cd04736 26 EKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNM 105 (361) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCC T ss_conf 59999999999847576622358878997631588405785478763577660888429999999987987896799999 Q ss_pred CCCCC-CCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEE----CCCC-------------CHH Q ss_conf 13687-899886268842555410000247777-7889998764100012100011----0454-------------246 Q gi|254780434|r 88 TPHPQ-AGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLG----ANKD-------------SKD 148 (362) Q Consensus 88 t~~p~-~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~----~~~~-------------s~~ 148 (362) T Consensus 106 s~EeVa~~~~g~~wfQLY~----------~~r~~~~~li~RA~~aG~~-alvlTvD~pv~G~Rerd~rngf~~P~~~~~~ 174 (361) T cd04736 106 SIEDVARQADGDLWFQLYV----------VHRELAELLVKRALAAGYT-TLVLTTDVAVNGYRERDLRNGFAIPFRYTPR 174 (361) T ss_pred CHHHHHHHCCCCEEEEEEE----------CCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCHHHHCCCCCCCCCCHH T ss_conf 9999986259984799887----------2879999999999985998-6899507888788835432256788655677 Q ss_pred HHHHHH----HHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCH Q ss_conf 788776----5554206755269830333653221100002343211112244455655312688517865--0577774 Q gi|254780434|r 149 FILDYV----SGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSE 222 (362) Q Consensus 149 ~~~dy~----~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~ 222 (362) T Consensus 175 ~~~~~~~~P~w~~~~~~~g~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tW~di~wlr~~w~~plilKGI~~~---- 247 (361) T cd04736 175 VLLDGILHPRWLLRFLRNGMP-QLANFASDDAIDVE--VQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTA---- 247 (361) T ss_pred HHHHHCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCH--HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCH---- T ss_conf 887751593889976502773-10234677777705--78899884368899999999999866997455214899---- Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999 Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362) Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362) T Consensus 248 ----eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------a~~~id~Lp~I~~av~--~~V~~DgGIRrG~DV 304 (361) T cd04736 248 ----EDAKRCIELGADGVILSNH----------GGRQLDD-------AIAPIEALAEIVAATY--KPVLIDSGIRRGSDI 304 (361) T ss_pred ----HHHHHHHHCCCCEEEECCC----------CCCCCCC-------CCCHHHHHHHHHHHHC--CEEEEECCCCCHHHH T ss_conf ----9999998769999997588----------6333577-------7414777999999719--949994898878999 Q ss_pred HHHHHCCCCEEEECHHHHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99998399975452787706----97----89999999999999983899778961 Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 303 ~e~l~aGAs~VQi~Tali~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 305 ~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~ 360 (361) T cd04736 305 VKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361) T ss_pred HHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 99997799989877899998771109999999999999999999985899867769 |
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >KOG0538 consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-10 Score=86.93 Aligned_cols=296 Identities=18% Similarity=0.172 Sum_probs=168.7 Q ss_pred HHHHHHHHHHHHHHH-HHH-CCCCCCCCCCEEEECCEECCCCEEECCC-------CCCCHHHHHHHHHCCCCEEECC--C Q ss_conf 678899999999620-111-0467889631168887335997485346-------8886779888740367524102--0 Q gi|254780434|r 18 PEIAHHLSIVALKSG-LLS-FFPVHSDPRLNTKVAGISLSNPLGMAAG-------YDKNAEVPIELLKLGFGFVEIG--T 86 (362) Q Consensus 18 pe~ah~~~~~~~~~~-~~~-~~~~~~~~~L~~~~~Gl~~~nPiglAaG-------~dk~~~~~~~l~~~G~G~v~~k--t 86 (362) T Consensus 29 d~~Tl~~N~~AF~ri~~rPr~L~dV~~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at 108 (363) T KOG0538 29 DQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWAT 108 (363) T ss_pred CHHHHHHHHHHHHHHHCCCHHHEECCCCCCCEEECCCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCHH T ss_conf 40218778999875501421430025355410331401264168751667660488622788898865698589731010 Q ss_pred CCCCC--CCCCCCCCEEEEE--CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC Q ss_conf 01368--7899886268842--5554100002477777889998764100012100011045424678877655542067 Q gi|254780434|r 87 VTPHP--QAGNPRPRVFRLT--KDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT 162 (362) Q Consensus 87 it~~p--~~GNp~PR~~r~~--~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~ 162 (362) T Consensus 109 ~S~EdI~~aap~~~rwfQLYvykdr~I----------t~~Lv~raEk~Gfk-AlvlTvDtP~l-G~R~~D~~n---~f~l 173 (363) T KOG0538 109 CSVEDIASAAPPGIRWFQLYVYKDRDI----------TEQLVKRAEKAGFK-ALVLTVDTPRL-GRRESDIKN---KFSL 173 (363) T ss_pred CCHHHHHHHCCCCCEEEEEEECCCHHH----------HHHHHHHHHHCCCE-EEEEEECCCCC-CCCHHHHHH---CCCC T ss_conf 789999851887737999985374468----------99999999972966-99998346112-676044440---2568 Q ss_pred CCCEEEEECCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 55269830333653221100002----34321111224445565531268851786505777748889999987644982 Q gi|254780434|r 163 IASYFTINISSPNTPGLRSLQKK----KNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362) Q Consensus 163 ~aD~iEiNiSCPNt~g~~~~~~~----~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362) T Consensus 174 p~~l~lknfe~~~~~~v~~~-~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~lPIvvKGi--lt----~eDA~~Ave~G~~ 246 (363) T KOG0538 174 PKNLTLKNFEGLKLTEVEEA-GDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGV--LT----GEDARKAVEAGVA 246 (363) T ss_pred CCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEE--CC----CHHHHHHHHHCCC T ss_conf 74210026555665567866-31346666423788777742469998527587699831--14----3879999980886 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278 Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362) Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362) T Consensus 247 GIIVSNHG-gR---------QlD~-------vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP 309 (363) T KOG0538 247 GIIVSNHG-GR---------QLDY-------VPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRP 309 (363) T ss_pred EEEEECCC-CC---------CCCC-------CCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCC T ss_conf 59985787-53---------2576-------6411887999999862854799726733542799998516736885672 Q ss_pred HHC----CCHHHHHH----HHHHHHHHHHHCCCCCHHHHHCC Q ss_conf 770----69789999----99999999998389977896169 Q gi|254780434|r 319 MIY----EGISLPKR----IIQGLSDFLNKENEVNFENIRGS 352 (362) Q Consensus 319 li~----~Gp~~~~~----I~~~L~~~l~~~G~~si~e~iG~ 352 (362) T Consensus 310 ~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363) T KOG0538 310 IVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363) T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC T ss_conf 102000256032999999999999999998478606540745 |
|
| >TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.7e-10 Score=85.45 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=165.6 Q ss_pred HHHHHHHHHH--HHHCCCCCCCCCCEEEECCEECCCCEEEC--C--CC---CCCHHHHHHHHHCCCCEEECCC----CCC Q ss_conf 9999999620--11104678896311688873359974853--4--68---8867798887403675241020----013 Q gi|254780434|r 23 HLSIVALKSG--LLSFFPVHSDPRLNTKVAGISLSNPLGMA--A--GY---DKNAEVPIELLKLGFGFVEIGT----VTP 89 (362) Q Consensus 23 ~~~~~~~~~~--~~~~~~~~~~~~L~~~~~Gl~~~nPiglA--a--G~---dk~~~~~~~l~~~G~G~v~~kt----it~ 89 (362) T Consensus 46 r~N~Raf~HKL~~P~~~~~VE~P~T~~~~~G~~l~~P~I~APvAAH~LA~~~~E~atAr~v~EFG--~i~~~S~YS~~~l 123 (368) T TIGR02708 46 RENIRAFNHKLIVPHLLQDVENPSTEIEFLGEKLKSPLIMAPVAAHKLANEQGEVATARGVSEFG--SIYTTSSYSTADL 123 (368) T ss_pred HHCCHHHCCCCCCCHHHCCCCCCCCEEEECCCEECCCEEECCHHHHHHHHCCCCHHHHHHHHHCC--CCEEEECCCCCCH T ss_conf 43102232420135233046788731676264104860441157643310012012210021203--1001101246767 Q ss_pred CC-CCC-CCCCCEEEE--ECCCCCEEECCCCCCCHHHHHHHHHHHHHCC-CCC--CEEECCCCCHHHHHHHHHHHHHHCC Q ss_conf 68-789-988626884--2555410000247777788999876410001-210--0011045424678877655542067 Q gi|254780434|r 90 HP-QAG-NPRPRVFRL--TKDRAIINKLGFNNAGYHTVFSRLSKIQPTS-PIG--INLGANKDSKDFILDYVSGIRLFFT 162 (362) Q Consensus 90 ~p-~~G-Np~PR~~r~--~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~-pi~--vsI~~~~~s~~~~~dy~~~~~~~~~ 162 (362) T Consensus 124 ~EIS~aL~G~P~WFQ~Y~~KDD~~-N---------R~I~D~~Ka~G~~AIvLTADaTV~GNR~~D-~~N----------- 181 (368) T TIGR02708 124 PEISEALNGTPHWFQFYMSKDDGI-N---------RDILDRVKADGAKAIVLTADATVGGNREVD-KRN----------- 181 (368) T ss_pred HHHHHHHCCCCCEEEEEEECCCCC-C---------HHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC----------- T ss_conf 999976279971588887403433-3---------467888752785289972146335774413-558----------- Q ss_pred CCCEEEEECCCCCCCC-CCCCCCHHHHHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 5526983033365322-110000234321111224---445565531268851786505777748889999987644982 Q gi|254780434|r 163 IASYFTINISSPNTPG-LRSLQKKKNLERLLIHVM---QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362) Q Consensus 163 ~aD~iEiNiSCPNt~g-~~~~~~~~~l~~~l~~v~---~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362) T Consensus 182 ---~FVfP~GMPIV~~YL~G~~~G~s~~~vY~~aKQ~lsprDiE~IA~ySGLPVyVKG~-Q-----~~ED~~~al~AGAS 252 (368) T TIGR02708 182 ---GFVFPVGMPIVQEYLPGEGAGKSLDYVYKSAKQKLSPRDIEEIAAYSGLPVYVKGP-Q-----CPEDADRALKAGAS 252 (368) T ss_pred ---CEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECC-C-----CHHHHHHHHHCCCC T ss_conf ---73611556033310788767740666665541157810089997217983686078-8-----86689999972886 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278 Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362) Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362) T Consensus 253 GIWV~NH----------G~RQl~~-------~PaaFD~L~~vAE~V~~rVPIVFDSGvRRG~Hv~KALASGAD~VAlGRP 315 (368) T TIGR02708 253 GIWVTNH----------GGRQLDG-------GPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRP 315 (368) T ss_pred EEEEECC----------CCCCCCC-------CCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCH T ss_conf 2576047----------7502367-------8752000699999852855668508843257899987235644301323 Q ss_pred HHCC----C----HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHH Q ss_conf 7706----9----789999999999999983899778961697526 Q gi|254780434|r 319 MIYE----G----ISLPKRIIQGLSDFLNKENEVNFENIRGSYTEY 356 (362) Q Consensus 319 li~~----G----p~~~~~I~~~L~~~l~~~G~~si~e~iG~~~~~ 356 (362) T Consensus 316 v~yGLAlGG~~G~~~V~~~l~~~L~~VMQL~G~Q~i~D~K~~~L~~ 361 (368) T TIGR02708 316 VIYGLALGGSVGARQVLEYLNKELKRVMQLTGTQTIEDVKGLDLRH 361 (368) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC T ss_conf 5666550102218999999998877776413875156532141333 |
The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=606.80 Aligned_cols=300 Identities=40% Similarity=0.643 Sum_probs=280.1 Q ss_pred CCEEEECCEECCCCEEECCCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH Q ss_conf 3116888733599748534688-867798887403675241020013687899886268842555410000247777788 Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG~d-k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362) T Consensus 1 ~l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~ 80 (310) T COG0167 1 DLSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA 80 (310) T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCHHHHH T ss_conf 97403564664997767455786577899999855785699667777777899998178715753088754898652899 Q ss_pred HHHHHHHHHHCC-CCCCEEECCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHH Q ss_conf 999876410001-210001104542--4678877655542067552698303336532211000-023432111122444 Q gi|254780434|r 123 VFSRLSKIQPTS-PIGINLGANKDS--KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQT 198 (362) Q Consensus 123 ~~~~l~~~~~~~-pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~ 198 (362) T Consensus 81 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~ 159 (310) T COG0167 81 FLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA 159 (310) T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHC T ss_conf 9999886400147767634887578857889999999975077-887999853899977466543999999999999863 Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCHHHH Q ss_conf 55655312688517865057777488899999876449829998066555323457----75446322113564542468 Q gi|254780434|r 199 REEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQC----SDNHEQDGGLSGSPLFLKST 274 (362) Q Consensus 199 ~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~----~~~~~~~GGlSG~~i~~~al 274 (362) T Consensus 160 ~---------~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~al 228 (310) T COG0167 160 T---------KVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310) T ss_pred C---------CCCEEEEECC--CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 5---------6865999388--8899999999999749858999700366553012345556676777757510027899 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf 99999997408974899967889999999999839997545278770697899999999999999838997789616975 Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362) Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362) T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~~G~~~ 308 (310) T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310) T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHCHHC T ss_conf 99999998428997489846869699999999829756404112102085099999999999999819987999845330 Q ss_pred H Q ss_conf 2 Q gi|254780434|r 355 E 355 (362) Q Consensus 355 ~ 355 (362) T Consensus 309 ~ 309 (310) T COG0167 309 R 309 (310) T ss_pred C T ss_conf 5 |
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=579.83 Aligned_cols=292 Identities=25% Similarity=0.408 Sum_probs=263.4 Q ss_pred CEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH Q ss_conf 1168887335997485346-888677988874036752410200136878998862688425554100002477777889 Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362) Q Consensus 45 L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362) T Consensus 1 Lev~l~Gi~~kNP~~lASG~~G~~~~~l~~~~~~gaGAVvTKs~g~~pr~Gy~nPtiVE~~--~G~lNAiGL~NPG~e~f 78 (308) T TIGR01037 1 LEVELFGIRFKNPVILASGVMGSGVEALRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVEVP--CGLLNAIGLQNPGVEAF 78 (308) T ss_pred CCEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCEEEECCEECCCCCCCCCCEEEECC--CCEEEECCCCCHHHHHH T ss_conf 9111067021066102211036628899987505886378621331588854438079817--85575235898217999 Q ss_pred HHHHHHHHHCCC-----CCCEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCC---CCCCCCHHHHHHHH Q ss_conf 998764100012-----10001104542467887765554206---75526983033365322---11000023432111 Q gi|254780434|r 124 FSRLSKIQPTSP-----IGINLGANKDSKDFILDYVSGIRLFF---TIASYFTINISSPNTPG---LRSLQKKKNLERLL 192 (362) Q Consensus 124 ~~~l~~~~~~~p-----i~vsI~~~~~s~~~~~dy~~~~~~~~---~~aD~iEiNiSCPNt~g---~~~~~~~~~l~~~l 192 (362) T Consensus 79 l~E~~~~~~e~~t~dvr~I~svyG~-----~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G~G~~iG~dP~l~~~vv 153 (308) T TIGR01037 79 LEELKDVREEVPTHDVRLIASVYGE-----SEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGGGGIEIGQDPELSADVV 153 (308) T ss_pred HHHHHHHHHCCCCCCEEEEEEECCC-----CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 9863256643898752899983188-----82258999998721134400001047774434234655477877999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CCC---CCCCCCCCCCCCCCCCCC Q ss_conf 1224445565531268851786505777748889999987644982999806655-532---345775446322113564 Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTL-SRK---GVQCSDNHEQDGGLSGSP 268 (362) Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~-~~~---~~~~~~~~~~~GGlSG~~ 268 (362) T Consensus 154 ~avK~~---------~d~Pv~aKLsPNV~--Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~GGlSGPA 222 (308) T TIGR01037 154 KAVKDK---------VDVPVFAKLSPNVT--DITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKTGGLSGPA 222 (308) T ss_pred HHHHCC---------CCCCEEEECCCCHH--HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCC T ss_conf 998300---------07865786486566--8999988875327761640012034677734207870000458850750 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 54246899999997408974899967889999999999839997545278770697899999999999999838997789 Q gi|254780434|r 269 LFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFEN 348 (362) Q Consensus 269 i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e 348 (362) T Consensus 223 IKPiA~r~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g~~~f~~i~~~l~~fl~~~~~~si~e 302 (308) T TIGR01037 223 IKPIAVRMVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGYKVFKKIIEGLIAFLKEEGFSSIEE 302 (308) T ss_pred CCCEEEEEHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH T ss_conf 14221210000477737823468632745589999999852202200022211775244888767889998728964477 Q ss_pred HHCCCC Q ss_conf 616975 Q gi|254780434|r 349 IRGSYT 354 (362) Q Consensus 349 ~iG~~~ 354 (362) T Consensus 303 ~iG~Ah 308 (308) T TIGR01037 303 LIGLAH 308 (308) T ss_pred HHCCCC T ss_conf 401369 |
3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=564.71 Aligned_cols=291 Identities=25% Similarity=0.351 Sum_probs=257.3 Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH Q ss_conf 31168887335997485346-88867798887403675241020013687899886268842555410000247777788 Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362) T Consensus 1 rL~~~~~Gl~f~nPi~lAAG~~~~~~~~~~~~~~~G~G~v~~kTit~~p~~Gnp~Pr~~~~~--~~~iN~~G~~n~G~~~ 78 (301) T PRK07259 1 RLSVNLPGLKLKNPVMPASGTFGFGGEYAKFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAVGLQNPGVDA 78 (301) T ss_pred CCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCHHH T ss_conf 96289799876997487766899999999999986975899172160402699998589666--2100346678835999 Q ss_pred HHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCC--CCCCCCHHHHHHHHHHHH Q ss_conf 999876410--001210001104542467887765554206--75526983033365322--110000234321111224 Q gi|254780434|r 123 VFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFF--TIASYFTINISSPNTPG--LRSLQKKKNLERLLIHVM 196 (362) Q Consensus 123 ~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~--~~aD~iEiNiSCPNt~g--~~~~~~~~~l~~~l~~v~ 196 (362) T Consensus 79 ~~~~~~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~ 153 (301) T PRK07259 79 FIEEELPWLEEFDTPIIANIAGS-----TPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301) T ss_pred HHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHH T ss_conf 99999976420699879973767-----7689999999864556888899965478888526660879999999999998 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHH Q ss_conf 4455655312688517865057777488899999876449829998066555323---4577544632211356454246 Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKS 273 (362) Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~a 273 (362) T Consensus 154 ~---------~~~~Pv~vKlsP~~~--~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~a 222 (301) T PRK07259 154 S---------VSKVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA 222 (301) T ss_pred H---------HCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 7---------348977998078712--19999999997599889995677676532356774335788863473351899 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC Q ss_conf 89999999740897489996788999999999983999754527877069789999999999999983899778961697 Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362) Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362) T Consensus 223 l~~v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQv~Ta-v~~Gp~~~~~i~~~L~~~l~~~G~~si~e~~G~a 299 (301) T PRK07259 223 LRMVYQVAKAV--DIPIIGMGGISTAEDAIEFMMAGASAVQVGTA-NFIDPYAFPEIIEGLEAYLDEEGIKSIEEIIGIA 299 (301) T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCHH T ss_conf 99999998516--98889767979999999999839879872123-3149069999999999999984999899971813 Q ss_pred CH Q ss_conf 52 Q gi|254780434|r 354 TE 355 (362) Q Consensus 354 ~~ 355 (362) T Consensus 300 hr 301 (301) T PRK07259 300 HK 301 (301) T ss_pred CC T ss_conf 29 |
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=560.68 Aligned_cols=295 Identities=24% Similarity=0.341 Sum_probs=254.7 Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH Q ss_conf 31168887335997485346-88867798887403675241020013687899886268842555410000247777788 Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362) T Consensus 1 ~~st~~~Gl~f~NPi~lAaG~~~~~~e~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~--~~~iN~~G~~n~G~~~ 78 (308) T PRK02506 1 STATQIAGFSFDNCLMNAAGVYCMTKEELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTP--LGSINSMGLPNNGFDY 78 (308) T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECC--CCHHHCCCCCCHHHHH T ss_conf 98879899955998887867899899999999976973899542354576699998699767--5301215478563899 Q ss_pred HHHHHHHHH---HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHH Q ss_conf 999876410---0012100011045424678877655542067552698303336532211000-023432111122444 Q gi|254780434|r 123 VFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQT 198 (362) Q Consensus 123 ~~~~l~~~~---~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~ 198 (362) T Consensus 79 ~~~~l~~~~~~~~~~~vi~si~g~--~~~e~~~~~~~~~~-~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~~v~~~ 155 (308) T PRK02506 79 YLDYVLDLQKTGPHKPHFLSVVGL--SPEETHTILKKIQA-SDFEGLVELNLSCPNVPGKPQIAYDFETTDQILTEVFTY 155 (308) T ss_pred HHHHHHHHHHHCCCCCEEEEEEEC--CHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHH T ss_conf 999889999627999758888507--75377888999875-475425546333788510555522899999999999987 Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHH Q ss_conf 5565531268851786505777748889999987644982999806655532345----775446322113564542468 Q gi|254780434|r 199 REEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ----CSDNHEQDGGLSGSPLFLKST 274 (362) Q Consensus 199 ~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~----~~~~~~~~GGlSG~~i~~~al 274 (362) T Consensus 156 ---------~~~Pi~vKlsP~~~~~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~al 226 (308) T PRK02506 156 ---------FTKPLGVKLPPYFDIVHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPTAL 226 (308) T ss_pred ---------HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf ---------50333455898777676999999856156537988702356620137751015678878877611337999 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC Q ss_conf 999999974089748999678899999999998399975452787706978999999999999998389977896169 Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362) Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362) T Consensus 227 ~~v~~~~~~~~~~i~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~~~l~~~G~~si~d~~G~ 304 (308) T PRK02506 227 ANVHAFYQRLKPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAIFERITKELKAIMVEKGYQSLEDFRGK 304 (308) T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCE T ss_conf 999999998389963898667078999999998198720684222045947999999999999998499988996544 |
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=552.56 Aligned_cols=287 Identities=25% Similarity=0.387 Sum_probs=250.1 Q ss_pred EEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH Q ss_conf 168887335997485346-8886779888740367524102001368789988626884255541000024777778899 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362) T Consensus 1 sv~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~--~~~iN~~G~~n~G~~~~~ 78 (296) T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFL 78 (296) T ss_pred CEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECC--HHHHHHCCCCCCCHHHHH T ss_conf 968898857998787867899839999998858963899380470314589998178154--116765237888648999 Q ss_pred HHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHH Q ss_conf 9876410--00121000110454246788776555420675-5269830333653221--10000234321111224445 Q gi|254780434|r 125 SRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTI-ASYFTINISSPNTPGL--RSLQKKKNLERLLIHVMQTR 199 (362) Q Consensus 125 ~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~-aD~iEiNiSCPNt~g~--~~~~~~~~l~~~l~~v~~~~ 199 (362) T Consensus 79 ~~l~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~-- 151 (296) T cd04740 79 EELLPWLREFGTPVIASIAGS-----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK-- 151 (296) T ss_pred HHHHHHHCCCCCEEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH-- T ss_conf 878986356897189981689-----8789999999988648988999788998676367757499999999999986-- Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 5655312688517865057777488899999876449829998066555323---4577544632211356454246899 Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKSTIA 276 (362) Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362) T Consensus 152 -------~~~~Pi~vKlsP~~~--~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~ 222 (296) T cd04740 152 -------ATDVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRM 222 (296) T ss_pred -------CCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf -------048966997189800--09999999997699889997467876636444675524557876867788999999 Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC Q ss_conf 99999740897489996788999999999983999754527877069789999999999999983899778961697 Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362) Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362) T Consensus 223 v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~~Gp~~i~~i~~~L~~~l~~~G~~si~e~~G~a 296 (296) T cd04740 223 VYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NFVDPEAFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296) T ss_pred HHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC T ss_conf 99998545--88879757979999999999839988872366-7429279999999999999983999899950359 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=515.89 Aligned_cols=278 Identities=25% Similarity=0.310 Sum_probs=242.0 Q ss_pred EEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH Q ss_conf 68887335997485346-88867798887403675241020013687899886268842555410000247777788999 Q gi|254780434|r 47 TKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362) Q Consensus 47 ~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362) T Consensus 1 vt~~Gl~~~NPi~~AaG~~~~~~e~~~~l~~~G~G~v~~kTit~~p~~GNp~PR~~r~~--~~~iN~~G~~n~G~~~~~~ 78 (294) T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFP--LGSINSLGLPNLGLDYYLE 78 (294) T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCCHHHHHH T ss_conf 90689828997887458999999999999976960999284387677799998488555--1466644478848899999 Q ss_pred HHHHHH-----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHH Q ss_conf 876410-----0012100011045424678877655542067552698303336532211000-0234321111224445 Q gi|254780434|r 126 RLSKIQ-----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQTR 199 (362) Q Consensus 126 ~l~~~~-----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~~ 199 (362) T Consensus 79 ~l~~~~~~~~~~~~pvi~si~g~--~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~~v~~-- 154 (294) T cd04741 79 YIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA-- 154 (294) T ss_pred HHHHHHHHCCCCCCCEEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH-- T ss_conf 99998654655587089989998--36799999999865225564799970378988731001399999999999984-- Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC------CCCCCCCCCCCCCCCCCCH Q ss_conf 565531268851786505777748889999987644--98299980665553234------5775446322113564542 Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSH--KVEGIIVSNTTLSRKGV------QCSDNHEQDGGLSGSPLFL 271 (362) Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~--g~dGiv~~NT~~~~~~~------~~~~~~~~~GGlSG~~i~~ 271 (362) T Consensus 155 -------~~~~Pv~vKlsP~~~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p 227 (294) T cd04741 155 -------AYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHP 227 (294) T ss_pred -------CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf -------1578559972898887899999999865788747999880367763335776564334556666667852158 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHH Q ss_conf 468999999974089748999678899999999998399975452787706978999999999999 Q gi|254780434|r 272 KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDF 337 (362) Q Consensus 272 ~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~ 337 (362) T Consensus 228 ~al~~v~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~el 293 (294) T cd04741 228 LALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDI 293 (294) T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 999999999997499987999899799999999998399799997999970929999999879965 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08318 dihydropyrimidine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=509.16 Aligned_cols=298 Identities=20% Similarity=0.277 Sum_probs=249.6 Q ss_pred CCCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCC--- Q ss_conf 631168887335997485346-8886779888740367524102001368789988626884255541000024777--- Q gi|254780434|r 43 PRLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNA--- 118 (362) Q Consensus 43 ~~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~--- 118 (362) T Consensus 2 ~DLst~~~Gl~lkNP~~lASgp~t~~~~~i~~~~~aG~GaVV~KTl~-~~~~~~~~pr~~~~~~--~~~~~~G~~N~eli 78 (413) T PRK08318 2 ADLSITFCGIKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG-PFIVNVSSPRFDALVK--EDRRFIGFNNIELI 78 (413) T ss_pred CCCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CCCCCCCCCCEEEECC--CCCCCCCCCCCCCC T ss_conf 86228889998189767898678899999999987695399905078-7677889998257357--76242362374213 Q ss_pred ---CHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-----CCHHH Q ss_conf ---77889998764100---01210001104542467887765554206755269830333653221100-----00234 Q gi|254780434|r 119 ---GYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSL-----QKKKN 187 (362) Q Consensus 119 ---G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~-----~~~~~ 187 (362) T Consensus 79 sd~~le~~L~~i~~~k~~~P~~~vIaSI~g~~-~~e~w~~la~~~e~~G--aDalELNiSCPn~~~~~~~G~~~gq~pe~ 155 (413) T PRK08318 79 TDRPLEVNLREIRRVKRDYPDRALIASIMVEC-NEEEWKEIAPLVEETG--ADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (413) T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHCCCHHH T ss_conf 44589999999999886078970899994587-8899999999866518--87799955567766666555110579999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CCC Q ss_conf 321111224445565531268851786505777748889999987644982999806655532345775--------446 Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD--------NHE 259 (362) Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~--------~~~ 259 (362) T Consensus 156 v~~i~~~---------Vk~~~~iPV~vKLsPnvt--di~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~ 224 (413) T PRK08318 156 VEMVTRW---------VKRGSRLPVIAKLTPNIT--DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKS 224 (413) T ss_pred HHHHHHH---------HHHHCCCCEEEEECCCCC--CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCC T ss_conf 9999999---------885068856998289975--28999999997699889998147865532022355302106777 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 32211356454246899999997408-97489996788999999999983999754527877069789999999999999 Q gi|254780434|r 260 QDGGLSGSPLFLKSTIALAKIRQRVG-PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362) Q Consensus 260 ~~GGlSG~~i~~~al~~i~~i~~~~~-~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362) T Consensus 225 ~~GGlSG~aikPiALr~V~~i~~~~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~~G~~ii~~i~~gL~~~m 304 (413) T PRK08318 225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (413) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHH T ss_conf 76766645676999999999986346788377975685989999999982789216751014338448999999999999 Q ss_pred HHCCCCCHHHHHCCCCHHH Q ss_conf 9838997789616975266 Q gi|254780434|r 339 NKENEVNFENIRGSYTEYW 357 (362) Q Consensus 339 ~~~G~~si~e~iG~~~~~~ 357 (362) T Consensus 305 ~~~G~~si~d~~G~a~~~~ 323 (413) T PRK08318 305 DEKGFASLEDMVGLAVPNV 323 (413) T ss_pred HHCCCCCHHHHHCCCCCCC T ss_conf 9809974888725265776 |
|
| >pfam01180 DHO_dh Dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=503.61 Aligned_cols=277 Identities=38% Similarity=0.616 Sum_probs=231.8 Q ss_pred CEEEECCEECCCCEEECCCCCCCHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH Q ss_conf 116888733599748534688867798-8874036752410200136878998862688425554100002477777889 Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAGYDKNAEVP-IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362) Q Consensus 45 L~~~~~Gl~~~nPiglAaG~dk~~~~~-~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362) T Consensus 2 L~t~~~Gl~~~nPi~lAsG~~~~~~~~~~~~~~~g~G~vv~ktit~~~~~gnp~Pr~~~~~--~~~~n~~G~~n~g~~~~ 79 (290) T pfam01180 2 LAVKIPGLKFKNPIGLASGFDKFGEEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFRLP--EGVLNAMGLNNPGLDAV 79 (290) T ss_pred EEEEECCEECCCCCEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCHHHHH T ss_conf 5699899887998788867688869999998718967799483485626699987799837--01442156577307999 Q ss_pred HHHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99876410----00121000110454246788776555420675526983033365322110000234321111224445 Q gi|254780434|r 124 FSRLSKIQ----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362) Q Consensus 124 ~~~l~~~~----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362) T Consensus 80 ~~~~~~~~~~~~~~~~vi~si~g~-----~~~d~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v--- 151 (290) T pfam01180 80 LEELLKRRKEYPRPLGIILSKAGS-----TVEDYVEVARKIGPFADYLELNVSCPNTPGLRALQTDPELAAILLKVV--- 151 (290) T ss_pred HHHHHHHHHHCCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHH--- T ss_conf 999998777538885378624669-----999999999999743588999985368876133404298999999998--- Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCHH Q ss_conf 5655312688517865057777488899999876---449829998066555323457----754463221135645424 Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL---SHKVEGIIVSNTTLSRKGVQC----SDNHEQDGGLSGSPLFLK 272 (362) Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~---~~g~dGiv~~NT~~~~~~~~~----~~~~~~~GGlSG~~i~~~ 272 (362) T Consensus 152 -----~~~~~~Pv~vKlsp~~~~~--~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~ 224 (290) T pfam01180 152 -----KEVSKVPVLVKLAPDLTDI--VIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPI 224 (290) T ss_pred -----HHCCCCCEEEEECCCCCCH--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf -----7504787389838987746--899999997183776899965873465555555666312567888576067899 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 689999999740897489996788999999999983999754527877069789999999999999 Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362) Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362) T Consensus 225 al~~v~~~~~~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~~Gp~~i~~i~~~L~~~m 290 (290) T pfam01180 225 ALKVIRELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIIDELPELL 290 (290) T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 999999999970899749998894999999999983997999858998419179999999999759 |
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=501.55 Aligned_cols=273 Identities=33% Similarity=0.501 Sum_probs=239.8 Q ss_pred EEECCEECCCCEEECCCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEE-------CCCCCEEECCCCCC Q ss_conf 6888733599748534688-867798887403675241020013687899886268842-------55541000024777 Q gi|254780434|r 47 TKVAGISLSNPLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLT-------KDRAIINKLGFNNA 118 (362) Q Consensus 47 ~~~~Gl~~~nPiglAaG~d-k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~-------~~~~iiN~~Gl~N~ 118 (362) T Consensus 1 V~~~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~Pr~~~~~~~~~~~~~~~~~~N~~g~~n~ 80 (289) T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289) T ss_pred CEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCC T ss_conf 96699828998888977888998999999976987899273572201589875188703666567551036215546787 Q ss_pred CHHHHHHHHHHHH---HCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCC-CCHHHHHHHHH Q ss_conf 7788999876410---0012100011045424678877655542067-55269830333653221100-00234321111 Q gi|254780434|r 119 GYHTVFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSL-QKKKNLERLLI 193 (362) Q Consensus 119 G~~~~~~~l~~~~---~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~-~~~~~l~~~l~ 193 (362) T Consensus 81 g~~~~~~~l~~~~~~~~~~pli~Si~~~--~~---~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~~~i~~ 155 (289) T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGS--SK---EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK 155 (289) T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCC--CH---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH T ss_conf 8899999999998617995399978889--87---899999999998479848998403675655320149999999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCC Q ss_conf 224445565531268851786505777748889999987644982999806655532345---77544632211356454 Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ---CSDNHEQDGGLSGSPLF 270 (362) Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~---~~~~~~~~GGlSG~~i~ 270 (362) T Consensus 156 ~v~~~---------~~~Pv~vKLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~ 226 (289) T cd02810 156 AVKAA---------VDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIR 226 (289) T ss_pred HHHHC---------CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 99860---------268748842788761689999999997599689996787765554444554456776523662778 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 246899999997408974899967889999999999839997545278770697899999999 Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 227 ~~al~~v~~~~~~~~~~i~Iig~GGI~~~~da~e~i~aGA~~Vqv~Tal~~~Gp~ii~~i~~E 289 (289) T cd02810 227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKKE 289 (289) T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCC T ss_conf 899999999999749996099989939999999999849979999899997586999998639 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=497.23 Aligned_cols=274 Identities=23% Similarity=0.353 Sum_probs=228.0 Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCC-CCCCCCCCCCEEEEECCCCCEEECCCCC---- Q ss_conf 31168887335997485346-88867798887403675241020013-6878998862688425554100002477---- Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTP-HPQAGNPRPRVFRLTKDRAIINKLGFNN---- 117 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~-~p~~GNp~PR~~r~~~~~~iiN~~Gl~N---- 117 (362) T Consensus 1 dL~t~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~--~~~~g~~n~~~~ 78 (299) T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSG--RGQIGFNNIELI 78 (299) T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCH--HHHCCCCCCHHH T ss_conf 998788999889986878778998999999999879888991568988788899998789887662--552133784012 Q ss_pred --CCHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCC-----CCHH Q ss_conf --777889998764100---012100011045424678877655542067-55269830333653221100-----0023 Q gi|254780434|r 118 --AGYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSL-----QKKK 186 (362) Q Consensus 118 --~G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~-----~~~~ 186 (362) T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~~-~---~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~ 154 (299) T cd02940 79 SEKPLEYWLKEIRELKKDFPDKILIASIMCEY-N---KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPE 154 (299) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-C---HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH T ss_conf 12029999999999875279973798851789-8---7899999999987188889982678898761234555244999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CC Q ss_conf 4321111224445565531268851786505777748889999987644982999806655532345775--------44 Q gi|254780434|r 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD--------NH 258 (362) Q Consensus 187 ~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~--------~~ 258 (362) T Consensus 155 ~l~~i~~~v~---------~~~~~Pi~vKLsP~~~--~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~ 223 (299) T cd02940 155 LVEEICRWVR---------EAVKIPVIAKLTPNIT--DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGK 223 (299) T ss_pred HHHHHHHHHH---------HHCCCCEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9999999998---------6247864896288715--4999999999859989999766677565442235666564567 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 6322113564542468999999974089748999678899999999998399975452787706978999999999 Q gi|254780434|r 259 EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 259 ~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 224 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~gL 299 (299) T cd02940 224 TTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTGL 299 (299) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCC T ss_conf 7778455878899999999999996489977899899599999999998499899998999980989999997219 |
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=482.43 Aligned_cols=295 Identities=20% Similarity=0.254 Sum_probs=240.7 Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCC------CCCCCCCCCEEEEECCCCCEEECCCC Q ss_conf 31168887335997485346-888677988874036752410200136------87899886268842555410000247 Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPH------PQAGNPRPRVFRLTKDRAIINKLGFN 116 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~------p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362) T Consensus 1 DLst~~~Gl~l~NPi~~ASg~~~~~~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~ 80 (325) T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325) T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC T ss_conf 98579899967998885652568999999999985967999795674234567788898888998871121403321455 Q ss_pred CCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCHHHHHHHHH Q ss_conf 7777889998764100--012100011045424678877655542067552698303336532211-0000234321111 Q gi|254780434|r 117 NAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR-SLQKKKNLERLLI 193 (362) Q Consensus 117 N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~-~~~~~~~l~~~l~ 193 (362) T Consensus 81 n~g~e~~l~~i~~~~~~~~~pvI~Si~g~--s~ee~~~~a~~~~~~g--ad~lElNls~~~~~~~~~~~~~~~~~~~iv~ 156 (325) T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGV--SAGGWVDYARQIEEAG--ADALELNIYALPTDPDISGAEVEQRYLDILR 156 (325) T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 75899999999998753598759871689--9899999999997649--9879996566788855442106889999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHH Q ss_conf 22444556553126885178650577774888999998764498299980665553234577544-63221135645424 Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNH-EQDGGLSGSPLFLK 272 (362) Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~-~~~GGlSG~~i~~~ 272 (362) T Consensus 157 ~V---------k~~~~~Pv~vKLsP~~~--di~~ia~aa~~~GAdgi~liNT~~~~~-id~~~~~~~~~~~lSg~~~~~~ 224 (325) T cd04739 157 AV---------KSAVTIPVAVKLSPFFS--ALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRL 224 (325) T ss_pred HH---------HHCCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCEEECCCCCCCCCCCHH T ss_conf 99---------86078866995399830--099999999975998899735766564-2167641536877457530068 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC Q ss_conf 68999999974089748999678899999999998399975452787706978999999999999998389977896169 Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362) Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362) T Consensus 225 alr~v~~~~~~~--~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i~~~i~~eL~~~m~~~G~~si~e~~Gk 302 (325) T cd04739 225 PLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325) T ss_pred HHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC T ss_conf 899999996468--989888889598999999998098876143234641837999999999999998399979996273 Q ss_pred CCHH Q ss_conf 7526 Q gi|254780434|r 353 YTEY 356 (362) Q Consensus 353 ~~~~ 356 (362) T Consensus 303 l~~~ 306 (325) T cd04739 303 MSQK 306 (325) T ss_pred CCCC T ss_conf 4545 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=471.73 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=237.9 Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCE--------EEEECCCCCEEECC Q ss_conf 31168887335997485346-8886779888740367524102001368789988626--------88425554100002 Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRV--------FRLTKDRAIINKLG 114 (362) Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~--------~r~~~~~~iiN~~G 114 (362) T Consensus 2 DLst~~~Gl~lkNPii~aSg~~~~~~~~~~~~~~~G~GavV~Ksi~~e-~i~~~~~~~~~~~~~~~~~~~~~~g~~n~~g 80 (333) T PRK07565 2 DLSTTYLGLSLRNPLVASASPLTESLDNVKRLEDAGAGAVVLKSLFEE-QIRHEAAELARHLTQGTESYAEALDYFPEPA 80 (333) T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 663888999669988866605799999999999859619996877610-1457777778888889867533345314234 Q ss_pred CCCCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-CCCCCCHHHHHHH Q ss_conf 477777889998764100--0121000110454246788776555420675526983033365322-1100002343211 Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG-LRSLQKKKNLERL 191 (362) Q Consensus 115 l~N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g-~~~~~~~~~l~~~ 191 (362) T Consensus 81 ~~n~g~e~~l~~i~~~k~~~~~pvIaSi~g~--s~ee~~~~a~~~e~~--gadaiElNis~~~~~~~~~~~~~~~~~~~i 156 (333) T PRK07565 81 YFRGGPEEYLELIRRAKEAVDIPVIASLNGS--SAGGWVDYARQIEEA--GADALELNIYYLPTDPDISGAEVEQRYLDI 156 (333) T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 5686899999999987750598459874779--989999999999764--998899976677988654446507889999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCC Q ss_conf 112244455655312688517865057777488899999876449829998066555323457754463-2211356454 Q gi|254780434|r 192 LIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQ-DGGLSGSPLF 270 (362) Q Consensus 192 l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~-~GGlSG~~i~ 270 (362) T Consensus 157 v~~V---------~~~~~~Pv~vKLsPn~t--di~~iA~aa~~~Gadgv~~iNT~~~~-~Id~e~~~~~~~~~lSgp~~~ 224 (333) T PRK07565 157 LRAV---------KSAVSIPVAVKLSPYFS--NLANMAKRLDAAGADGLVLFNRFYQP-DIDLETLEVVPGLVLSTPAEL 224 (333) T ss_pred HHHH---------HHHCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCEEECCCCCCCCCCC T ss_conf 9999---------86468856873599821--09999999997499889984366656-331554437368666774312 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 24689999999740897489996788999999999983999754527877069789999999999999983899778961 Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 225 ~~alr~v~~v~~~~--~ipIiG~GGI~sg~DaiE~ilAGAsaVQv~Ta~~~~G~~v~~~i~~eL~~~m~~~G~~si~e~~ 302 (333) T PRK07565 225 RLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILAGLEDWMERHGYESLSQFR 302 (333) T ss_pred CHHHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHC T ss_conf 07889999996046--9898888895989999999980988633622366537279999999999999983999899961 Q ss_pred CCCC Q ss_conf 6975 Q gi|254780434|r 351 GSYT 354 (362) Q Consensus 351 G~~~ 354 (362) T Consensus 303 G~l~ 306 (333) T PRK07565 303 GSMS 306 (333) T ss_pred CCCC T ss_conf 7236 |
|
| >KOG1799 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=327.27 Aligned_cols=315 Identities=18% Similarity=0.206 Sum_probs=248.5 Q ss_pred HHHCCCCCCCCCCEEEECCEECCCCEEECCCC-CCCHHHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCEEEEECCCCC- Q ss_conf 11104678896311688873359974853468-8867798887403675241020013687-89988626884255541- Q gi|254780434|r 33 LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGY-DKNAEVPIELLKLGFGFVEIGTVTPHPQ-AGNPRPRVFRLTKDRAI- 109 (362) Q Consensus 33 ~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~-dk~~~~~~~l~~~G~G~v~~ktit~~p~-~GNp~PR~~r~~~~~~i- 109 (362) T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~ 170 (471) T KOG1799 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCF 170 (471) T ss_pred CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEEECCHHHHEECCCCEEECCCCCCCC T ss_conf 12342101014452003576579854347899996278898531035651110102213254220466336446788764 Q ss_pred -EEECCCCCC------CHHHHHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCC Q ss_conf -000024777------778899987641---000121000110454246788776555420-675526983033365322 Q gi|254780434|r 110 -INKLGFNNA------GYHTVFSRLSKI---QPTSPIGINLGANKDSKDFILDYVSGIRLF-FTIASYFTINISSPNTPG 178 (362) Q Consensus 110 -iN~~Gl~N~------G~~~~~~~l~~~---~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g 178 (362) T Consensus 171 ~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciyn----k~~w~el~d~~eqag~d~lE~nlscphgm~ 246 (471) T KOG1799 171 IPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYN----KKCWMELNDSGEQAGQDDLETNLSCPHGMC 246 (471) T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH----HHHHHHHHHHHHHHCCCCHHCCCCCCCCCC T ss_conf 6688765024564452399999999975014883463467898852----136899865677634430320588988876 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---- Q ss_conf 1100002343211112244455655312688517865057777488899999876449829998066555323457---- Q gi|254780434|r 179 LRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQC---- 254 (362) Q Consensus 179 ~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~---- 254 (362) T Consensus 247 ergmgla~gq~p~v~~EvC~Wi~----A~~~Ip~~~kmTPNitd--~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~ 320 (471) T KOG1799 247 ERGMGLALGQCPIVDCEVCGWIN----AKATIPMVSKMTPNITD--KREVARSVNPVGCEGIAAINTIMSVMGIDMKTLR 320 (471) T ss_pred CCCCCCEECCCHHHHHHHHHHHH----HCCCCCCCCCCCCCCCC--CCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 56641011568056677764544----21102100356898664--5432110376653203557688887544413368 Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH Q ss_conf ----7544632211356454246899999997408974899967889999999999839997545278770697899999 Q gi|254780434|r 255 ----SDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362) Q Consensus 255 ----~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362) T Consensus 321 P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~ 399 (471) T KOG1799 321 PEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTL 399 (471) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHH T ss_conf 77664565578874642203588999999999862-58612335743231235576507737545167775486359989 Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCHHHH Q ss_conf 9999999998389977896169752664 Q gi|254780434|r 331 IQGLSDFLNKENEVNFENIRGSYTEYWA 358 (362) Q Consensus 331 ~~~L~~~l~~~G~~si~e~iG~~~~~~~ 358 (362) T Consensus 400 Ca~LK~~m~~~~~~ti~~~~G~SL~~~~ 427 (471) T KOG1799 400 CAELKDFMKQHNFSTIEEFRGHSLQYFT 427 (471) T ss_pred HHHHHHHHHHCCCHHHHHCCCCCHHHHH T ss_conf 9889999987170045531670023100 |
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=130.37 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=150.6 Q ss_pred EECCEECCCCEEEC--CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH Q ss_conf 88873359974853--4688867798887403675241020013687899886268842555410000247777788999 Q gi|254780434|r 48 KVAGISLSNPLGMA--AGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362) Q Consensus 48 ~~~Gl~~~nPiglA--aG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362) T Consensus 2 ~ig~~~~~~~l~lAPMagvt-d~~FR~l~~~~Ga~l~~TEmv~a~-----------------~~~----~~~---~~~~~ 56 (321) T PRK10415 2 RIGQYQLRNRLIAAPMAGIT-DRPFRTLCYEMGAGLTVSEMMSSN-----------------PQV----WES---DKSRL 56 (321) T ss_pred CCCCEECCCCEEECCCCCCC-CHHHHHHHHHHCCCEEEECCEEEC-----------------HHH----HCC---HHHHH T ss_conf 37988448988973578994-899999999988399998758712-----------------777----338---48898 Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC------CCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8764100012100011045424678877655542-067552698303336------532211000023432111122444 Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRL-FFTIASYFTINISSP------NTPGLRSLQKKKNLERLLIHVMQT 198 (362) Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~-~~~~aD~iEiNiSCP------Nt~g~~~~~~~~~l~~~l~~v~~~ 198 (362) T Consensus 57 ~~~~~~~~~~~~vQl~G~d-----p~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a 131 (321) T PRK10415 57 RMVHVDEPGIRTVQIAGSD-----PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA 131 (321) T ss_pred HHCCCCCCCCCEEEECCCC-----HHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHC T ss_conf 6304678898059972699-----99999999988764999894318999899707983650633989999999999734 Q ss_pred HHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 556553126885178650--577774888999998764498299980665553234577544632211356454246899 Q gi|254780434|r 199 REEEKIKTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIA 276 (362) Q Consensus 199 ~~~~~~~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362) T Consensus 132 ---------~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvHg----RT~---------~q~y~g~ad----w~~ 185 (321) T PRK10415 132 ---------VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG----RTR---------ACLFNGEAE----YDS 185 (321) T ss_pred ---------CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHH---------HHHHCCCCC----HHH T ss_conf ---------487469998468885224399999999856988999972----213---------443169987----799 Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 9999974089748999678899999999998-399975452787706978999999999 Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 186 i~~vk~~~--~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~n-PwiF~~i~~~l 241 (321) T PRK10415 186 IRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR-PWIFREIQHYL 241 (321) T ss_pred HHHHHHCC--CCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCC-CHHHHHHHHHH T ss_conf 99998547--9978965891999999999986299999975665369-87799999998 |
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-16 Score=128.84 Aligned_cols=263 Identities=21% Similarity=0.306 Sum_probs=155.7 Q ss_pred CCCCCCCEEEECCEECCCCEEECC---CCCCC----HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE Q ss_conf 788963116888733599748534---68886----77988874036752410200136878998862688425554100 Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAA---GYDKN----AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362) Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAa---G~dk~----~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362) T Consensus 36 d~~~iDlst~~lG~~l~~P~~I~AMTGG~~~~~~iN~~LA~aA~~~gi~m-~vGSq~~---------------------- 92 (326) T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAM-GVGSQRA---------------------- 92 (326) T ss_pred CHHHCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EECCHHH---------------------- T ss_conf 86446265358973247875887555797556588999999999819977-8342288---------------------- Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCCCCCHHH Q ss_conf 00247777788999876410001210001104542467887765554206755269830333653----22110000234 Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNT----PGLRSLQKKKN 187 (362) Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt----~g~~~~~~~~~ 187 (362) T Consensus 93 --al~~~~~~~sf~vvR~~~p~~~l~aNiga~~l~~~~~~~~~~ai~~l~--AdaL~iHlN~~QE~~~peGDr~f~---- 164 (326) T cd02811 93 --ALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIE--ADALAIHLNPLQEAVQPEGDRDFR---- 164 (326) T ss_pred --HHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHCC--CCEEEEECCHHHHCCCCCCCCCHH---- T ss_conf --753921665678998758876278635803304568999999998557--885786446065400789898777---- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 3211112244455655312688517865-----05777748889999987644982999806655532345775446322 Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDG 262 (362) Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~G 262 (362) T Consensus 165 --~~~~~I------~~l~~~~~vPVIvKeVG~Gis~--------eda~~l~~~Gv~~IdVSghGGT-nf~~IE~~R~~d~ 227 (326) T cd02811 165 --GWLERI------EELVKALSVPVIVKEVGFGISR--------ETAKRLADAGVKAIDVAGAGGT-SWARVENYRAKDS 227 (326) T ss_pred --HHHHHH------HHHHHHCCCCEEEEECCCCCCH--------HHHHHHHHCCCCEEEECCCCCC-CHHHHHHHCCCCC T ss_conf --899999------9999847998588524789999--------9999999679999997899997-5366531015673 Q ss_pred CC-CCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC---CCH----HHHHHHH Q ss_conf 11-3564542---46899999997408974899967889999999999839997545278770---697----8999999 Q gi|254780434|r 263 GL-SGSPLFL---KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY---EGI----SLPKRII 331 (362) Q Consensus 263 Gl-SG~~i~~---~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp----~~~~~I~ 331 (362) T Consensus 228 ~~~~~~~l~dwGi~T~~sL~e~~~~-~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~ 306 (326) T cd02811 228 DQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQII 306 (326) T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 1337889886285569999999973-899819986887877999999995553365279999998548999999999999 Q ss_pred HHHHHHHHHCCCCCHHHHH Q ss_conf 9999999983899778961 Q gi|254780434|r 332 QGLSDFLNKENEVNFENIR 350 (362) Q Consensus 332 ~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 307 ~el~~~M~l~G~~~i~eLr 325 (326) T cd02811 307 EELRTAMFLTGAKNLAELK 325 (326) T ss_pred HHHHHHHHHHCCCCHHHHC T ss_conf 9999999986899889974 |
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=130.47 Aligned_cols=234 Identities=21% Similarity=0.226 Sum_probs=162.6 Q ss_pred ECCEECCCCEEEC--CCC-CCCHHHHHHHHHCC-------CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCC Q ss_conf 8873359974853--468-88677988874036-------7524102001368789988626884255541000024777 Q gi|254780434|r 49 VAGISLSNPLGMA--AGY-DKNAEVPIELLKLG-------FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNA 118 (362) Q Consensus 49 ~~Gl~~~nPiglA--aG~-dk~~~~~~~l~~~G-------~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~ 118 (362) T Consensus 1 IG~~~L~s~V~~APmAGvtD~~FR~l~~~--~~~skvGtvagL~~~EMvs~~~-----------------~~~----~~- 56 (336) T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDLAFRRLVAE--YGQSKVGTVAGLTVSEMVSSEA-----------------IVY----KS- 56 (336) T ss_pred CCCCCCCCCEEECCCCCCCCHHHHHHHHH--HCCCCCCCCCCCCEECCCCCHH-----------------HHH----HH- T ss_conf 98722367656436778767178999998--5214433124100222004537-----------------886----23- Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHH Q ss_conf 778899987641000121000110454246788776555420675526983033365------32211000023432111 Q gi|254780434|r 119 GYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLL 192 (362) Q Consensus 119 G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l 192 (362) T Consensus 57 -r~~~~~~~~~~~~~~~~~~Ql~Gs~--P~~~aeAAk~i~-~~~ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv 132 (336) T TIGR00737 57 -RERTKKLLDIDEDETPISVQLFGSD--PDTMAEAAKLIN-EELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIV 132 (336) T ss_pred -HHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf -5557765321258885478764788--268999999985-305898885367654884216763543235868999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 122444556553126885178650--577774888999998764498299980665553234577544632211356454 Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362) Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362) T Consensus 133 ~~vV~AV~~------~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~l----HGRTR---------aQ~Y~G~A~- 192 (336) T TIGR00737 133 KAVVDAVDA------QDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL----HGRTR---------AQGYEGEAN- 192 (336) T ss_pred HHHHHHHCC------CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEH----HHHHH---------CCCCCCCCC- T ss_conf 999987518------7665166551563624488899999998724000211----10000---------015788760- Q ss_pred HHHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 24689999999740897--489996788999999999983-99975452787706978999999999 Q gi|254780434|r 271 LKSTIALAKIRQRVGPK--IAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 271 ~~al~~i~~i~~~~~~~--i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 193 ---wd~I~~vKq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~-lG~PWl~~~i~~yL 255 (336) T TIGR00737 193 ---WDIIARVKQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGA-LGNPWLFKQIEQYL 255 (336) T ss_pred ---HHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHH-CCCCHHHHHHHHHH T ss_conf ---6899999999716875332227742467899999863788689850022-27875899999997 |
Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=123.20 Aligned_cols=259 Identities=22% Similarity=0.283 Sum_probs=159.7 Q ss_pred CCCCCCCEEEECCEECCCCEEECC---CCCCCHHH----HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE Q ss_conf 788963116888733599748534---68886779----88874036752410200136878998862688425554100 Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAA---GYDKNAEV----PIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362) Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAa---G~dk~~~~----~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362) T Consensus 44 ~~~diD~st~~lG~~l~~P~~I~aMTGG~~~~~~IN~~LA~~A~~~gi~m-~vGSqr~---------------------- 100 (351) T PRK05437 44 DLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM-GVGSQRA---------------------- 100 (351) T ss_pred CHHHCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EECCHHH---------------------- T ss_conf 88777065258872537876886534687546289999999999839877-7331788---------------------- Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCCCCHHH Q ss_conf 0024777778899987641000121000110454246788776555420675526983033365----322110000234 Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN----TPGLRSLQKKKN 187 (362) Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN----t~g~~~~~~~~~ 187 (362) T Consensus 101 --al~~~~~~~sf~vvR~~~p~~~l~aNiGa~~~~~~~~~~~~~av~~i~--AdAl~iHlN~~QEl~qpEGDr~f~~--- 173 (351) T PRK05437 101 --ALKDPELADSFSVVRKVAPDGLLFANIGAVQLYGYGVEEAQRAVEMIE--ADALQIHLNPLQELVQPEGDRDFRG--- 173 (351) T ss_pred --HHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC--CCCEEEECCCHHHHCCCCCCCCHHH--- T ss_conf --853914565699999868887388612721014358999999999716--7815752462454028888977889--- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------CCCCCC Q ss_conf 3211112244455655312688517865-----057777488899999876449829998066555--------323457 Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLS--------RKGVQC 254 (362) Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~--------~~~~~~ 254 (362) T Consensus 174 ---~l~~I~------~i~~~~~vPVIvKeVG~Gis--------~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~-~~ 235 (351) T PRK05437 174 ---WLDRIA------EIVSALPVPVIVKEVGFGIS--------KETAKRLADAGVKAIDVAGAGGTSWAAVENYRAK-QR 235 (351) T ss_pred ---HHHHHH------HHHHHCCCCEEEEECCCCCC--------HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-CH T ss_conf ---999999------99986799889852157889--------9999999967999999579988557999988710-21 Q ss_pred CCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----CCH---- Q ss_conf 7544--632211356454246899999997408974899967889999999999839997545278770----697---- Q gi|254780434|r 255 SDNH--EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY----EGI---- 324 (362) Q Consensus 255 ~~~~--~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~----~Gp---- 324 (362) T Consensus 236 ~~~~~~~~w-Gip-------T~~sL~e~~~~-~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~l~~~g~e~~~ 306 (351) T PRK05437 236 RLASYFADW-GIP-------TAQSLLEARSA-LPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKAALEGGVEAVI 306 (351) T ss_pred HHHHHHHHC-CCC-------HHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH T ss_conf 245777734-866-------89999999974-799829962787878999999995510777589999999856999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf 899999999999999838997789616975 Q gi|254780434|r 325 SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362) Q Consensus 325 ~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362) T Consensus 307 ~~l~~~~~elk~~M~L~G~~~i~eL~~~~~ 336 (351) T PRK05437 307 EEIEGWIEELKTAMFLTGAKNIAELRQVPL 336 (351) T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCE T ss_conf 999999999999999868998999817999 |
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=114.75 Aligned_cols=226 Identities=19% Similarity=0.244 Sum_probs=151.5 Q ss_pred EECCEECCCCEEEC--CCCCCCHHHHHHHHH-CCC-CEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH Q ss_conf 88873359974853--468886779888740-367-52410200136878998862688425554100002477777889 Q gi|254780434|r 48 KVAGISLSNPLGMA--AGYDKNAEVPIELLK-LGF-GFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362) Q Consensus 48 ~~~Gl~~~nPiglA--aG~dk~~~~~~~l~~-~G~-G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362) T Consensus 3 ~~~~~~~~~~~~lAPM~gv-td~-~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~----------------------- 57 (323) T COG0042 3 KIGLIELRNRVILAPMAGV-TDL-PFRRLARELGAYDLLYTEMVSAKALLHGRKKFL----------------------- 57 (323) T ss_pred CCCCCCCCCCEEEECCCCC-CCH-HHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHH----------------------- T ss_conf 6455556787788348898-668-999999995887528974045304552770044----------------------- Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9987641000121000110454246788776555420675526983033365------3221100002343211112244 Q gi|254780434|r 124 FSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQ 197 (362) Q Consensus 124 ~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~ 197 (362) T Consensus 58 -~~~~~~~~e~p~~vQl~gsdp--~~laeaA~~~~~~g--~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~ 132 (323) T COG0042 58 -LLLDELEEERPVAVQLGGSDP--ELLAEAAKIAEELG--ADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE 132 (323) T ss_pred -HCCCCCCCCCCEEEEECCCCH--HHHHHHHHHHHHCC--CCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf -305645667877999738998--99999999998669--9989876899928980898447771798999999999998 Q ss_pred HHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 45565531268851786505--7777488899999876449829998066555323457754463221135645424689 Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKIS--PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI 275 (362) Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLs--Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~ 275 (362) T Consensus 133 av~--------~iPVTVKiRlG~d~~~~~~~~ia~~~~~~G~~~ltVHg----Rtr---------~~~y~~~----a~~~ 187 (323) T COG0042 133 AVG--------DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHG----RTR---------AQGYLGP----ADWD 187 (323) T ss_pred HCC--------CCCEEEEEECCCCCHHCCHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCC----CCHH T ss_conf 538--------88749998578780020099999999967987899955----667---------6468986----4879 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHH Q ss_conf 999999740897489996788999999999983-9997545278770697899999 Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRI 330 (362) Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I 330 (362) T Consensus 188 ~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga-~~nP~l~~~i 241 (323) T COG0042 188 YIKELKEAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA-LGNPWLFRQI 241 (323) T ss_pred HHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHCCCEEEECHHH-HCCCHHHHHH T ss_conf 99999986799-759857994999999999984189879974353-1695575533 |
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase) | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=121.27 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=172.2 Q ss_pred CCCCCCCEEEECCEECCCCEEECCCCCC--------CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCE Q ss_conf 7889631168887335997485346888--------67798887403675241020013687899886268842555410 Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAAGYDK--------NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAII 110 (362) Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAaG~dk--------~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~ii 110 (362) T Consensus 40 ~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~-mgvGSq-----------ra---------- 97 (349) T TIGR02151 40 NLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLARAAEELGIP-MGVGSQ-----------RA---------- 97 (349) T ss_pred CHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC-EEECHH-----------HH---------- T ss_conf 75362642444682211676761455773678889989999999981981-543002-----------22---------- Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH----HHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCC Q ss_conf 0002477777889998764100012100011045424----6788776555420675526983033365----3221100 Q gi|254780434|r 111 NKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK----DFILDYVSGIRLFFTIASYFTINISSPN----TPGLRSL 182 (362) Q Consensus 111 N~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~----~~~~dy~~~~~~~~~~aD~iEiNiSCPN----t~g~~~~ 182 (362) T Consensus 98 ---al~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~--AdAL~iHlN~~QE~vqpEGDr~F 172 (349) T TIGR02151 98 ---ALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIE--ADALAIHLNVLQELVQPEGDRNF 172 (349) T ss_pred ---HHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCHHH T ss_conf ---1127124666999997679833787178788740653448899999998751--01335543233025579997015 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC Q ss_conf 002343211112244455655312688517865-----05777748889999987644982999806---65-----553 Q gi|254780434|r 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSN---TT-----LSR 249 (362) Q Consensus 183 ~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~N---T~-----~~~ 249 (362) T Consensus 173 -----~~G~l~~i~~~------~~~~~vPVIvKEvG~G~S--------~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~R 233 (349) T TIGR02151 173 -----SKGWLEKIAEI------CSAVSVPVIVKEVGFGIS--------KEVAKLLADAGVKAIDVSGAGGTSWAAVENYR 233 (349) T ss_pred -----HHHHHHHHHHH------HHHCCCCEEEEECCCCCC--------HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH T ss_conf -----65389999999------965289879982157998--------89999998789008870787675599999887 Q ss_pred -CCCC--CC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC- Q ss_conf -2345--77----544632211356454246899999997408974899967889999999999839997545278770- Q gi|254780434|r 250 -KGVQ--CS----DNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY- 321 (362) Q Consensus 250 -~~~~--~~----~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~- 321 (362) T Consensus 234 r~~~~~~~~~r~a~~f~~W-Gip-------T~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~ 305 (349) T TIGR02151 234 RAKESNQKYERLASAFSDW-GIP-------TAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKA 305 (349) T ss_pred HHCCCCCHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5157523578887777414-886-------68999998642124773688467778889999999621188888999998 Q ss_pred ---CCH----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf ---697----899999999999999838997789616975 Q gi|254780434|r 322 ---EGI----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362) Q Consensus 322 ---~Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362) T Consensus 306 ~~~~g~e~~~~~~~~~~~eLk~~mfl~G~~~i~EL~~~~~ 345 (349) T TIGR02151 306 ALDEGEEAVIEEIELIIEELKVAMFLTGAKNIKELKKVPL 345 (349) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCE T ss_conf 8526988999999999999999998717988798617871 |
IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=98.40 Aligned_cols=258 Identities=22% Similarity=0.246 Sum_probs=151.5 Q ss_pred EEEECCEECCCCEEECCCC----CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC Q ss_conf 1688873359974853468----886-------77988874036752410200136878998862688425554100002 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGY----DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG~----dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362) T Consensus 3 P~~ig~~~lkNRiv~apm~~~~a~~~G~pt~~~~~yy~~rA~gG~GLIite~~~v~~~~-~~~~~~------------~~ 69 (327) T cd02803 3 PIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEG-KGYPGQ------------LG 69 (327) T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHH-CCCCCC------------CC T ss_conf 83189999877368814185734589999999999999997499617998777876512-479997------------50 Q ss_pred CCCC----CHHHHHHHHHHHHHCCCCCCEEE---------------------C-----CC---CC----HHHHHHHHHHH Q ss_conf 4777----77889998764100012100011---------------------0-----45---42----46788776555 Q gi|254780434|r 115 FNNA----GYHTVFSRLSKIQPTSPIGINLG---------------------A-----NK---DS----KDFILDYVSGI 157 (362) Q Consensus 115 l~N~----G~~~~~~~l~~~~~~~pi~vsI~---------------------~-----~~---~s----~~~~~dy~~~~ 157 (362) T Consensus 70 i~~d~~i~~~k~l~~~vh~--~G~~i~~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 147 (327) T cd02803 70 IYDDEQIPGLRKLTEAVHA--HGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAA 147 (327) T ss_pred CCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 3623547888799887632--79879987202765567444689988877544456898886299999999999999999 Q ss_pred HHHC-CCCCEEEEECC---------CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----- Q ss_conf 4206-75526983033---------365--322110000234321111224445565531268851786505777----- Q gi|254780434|r 158 RLFF-TIASYFTINIS---------SPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL----- 220 (362) Q Consensus 158 ~~~~-~~aD~iEiNiS---------CPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~----- 220 (362) T Consensus 148 ~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~---~vg~df~vgvRls~~d~~~~g 224 (327) T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVRE---AVGPDFPVGVRLSADDFVPGG 224 (327) T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCEEEEECHHHCCCCC T ss_conf 99998499989983576618887217546987777888989998999999999999---739887617997702126899 Q ss_pred -CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH Q ss_conf -7488899999876449829998066555323457754463221135645424689999999740897489996788999 Q gi|254780434|r 221 -SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST 299 (362) Q Consensus 221 -~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~ 299 (362) T Consensus 225 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~------~~~~~~---~~~~~~~~~ik~~~--~~pvi~~G~i~~~ 293 (327) T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIP------PPYVPE---GYFLELAEKIKKAV--KIPVIAVGGIRDP 293 (327) T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC------CCCCCC---CCCHHHHHHHHHHC--CCCEEEECCCCCH T ss_conf 998999999999985599989977784566754467------877775---22389999999976--9819998998999 Q ss_pred HHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 9999999839-997545278770697899999999 Q gi|254780434|r 300 KDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 300 ~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 294 ~~a~~~l~~g~~D~V~~gR~~iad-Pd~~~k~~~G 327 (327) T cd02803 294 EVAEEILAEGKADLVALGRALLAD-PDLPNKAREG 327 (327) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCC T ss_conf 999999988993125866999979-1499999775 |
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-12 Score=99.93 Aligned_cols=257 Identities=17% Similarity=0.159 Sum_probs=148.8 Q ss_pred EEEECCEECCCCEEECC--------CCCC--CHHHHHHHHHCCCCEEECCCCCCCCCC-CCCC-CCEEEEECCCCCEEEC Q ss_conf 16888733599748534--------6888--677988874036752410200136878-9988-6268842555410000 Q gi|254780434|r 46 NTKVAGISLSNPLGMAA--------GYDK--NAEVPIELLKLGFGFVEIGTVTPHPQA-GNPR-PRVFRLTKDRAIINKL 113 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAa--------G~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~-GNp~-PR~~r~~~~~~iiN~~ 113 (362) T Consensus 4 Pi~ig~~~l~NRiv~apm~~~~~~dG~pt~~~~~yy~~rA~gG~GlIite~~~V~~~g~~~~~~~gi~~---d~-~i--- 76 (336) T cd02932 4 PLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---DE-QI--- 76 (336) T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCH---HH-HH--- T ss_conf 825899988885286875768188998999999999999759973899745586612056998656567---99-99--- Q ss_pred CCCCCCHHHHHHHHHHHH--------------------------------HCCCCCCEEECCC--------CC----HHH Q ss_conf 247777788999876410--------------------------------0012100011045--------42----467 Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQ--------------------------------PTSPIGINLGANK--------DS----KDF 149 (362) Q Consensus 114 Gl~N~G~~~~~~~l~~~~--------------------------------~~~pi~vsI~~~~--------~s----~~~ 149 (362) T Consensus 77 ----~~~~~l~~avh~~G~~i~~QL~H~Gr~a~~~~~~~~~~~~~~~~~~~~~~~apS~v~~~~~~~~pr~mt~~eI~~i 152 (336) T cd02932 77 ----EALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEV 152 (336) T ss_pred ----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf ----9999999999866987998622466432345753356777764357985057887766779998856899999999 Q ss_pred HHHHHHHHHHHC-CCCCEEEEEC---------CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 887765554206-7552698303---------33653--22110000234321111224445565531268851786505 Q gi|254780434|r 150 ILDYVSGIRLFF-TIASYFTINI---------SSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS 217 (362) Q Consensus 150 ~~dy~~~~~~~~-~~aD~iEiNi---------SCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs 217 (362) T Consensus 153 i~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~---~vg~d~~vgvRis 229 (336) T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRA---VWPEDKPLFVRIS 229 (336) T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEC T ss_conf 9999999999998399999863137479998369411677786799789998899999999999---8399887068964 Q ss_pred CC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 77------774888999998764498299980665553234577544632211356454246899999997408974899 Q gi|254780434|r 218 PD------LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362) Q Consensus 218 Pd------~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362) T Consensus 230 ~~d~~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G--~~~~--~~~~~~------~~~---~~~~~a~~ik~~~--~ipvi 294 (336) T cd02932 230 ATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG--GNSP--AQKIPV------GPG---YQVPFAERIRQEA--GIPVI 294 (336) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCC--CCCCCC------CCC---CCHHHHHHHHHHC--CCCEE T ss_conf 5235789989999999999999759978995589--8776--666777------864---2679999999878--98399 Q ss_pred EECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHH Q ss_conf 967889999999999839-99754527877069789999999 Q gi|254780434|r 292 GTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQ 332 (362) Q Consensus 292 g~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~ 332 (362) T Consensus 295 ~~G~i~~p~~ae~~l~~G~~DlV~~gR~~iad-Pdlp~kaAa 335 (336) T cd02932 295 AVGLITDPEQAEAILESGRADLVALGRELLRN-PYWPLHAAA 335 (336) T ss_pred EECCCCCHHHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHC T ss_conf 97998999999999987994006867999979-339999867 |
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=99.17 Aligned_cols=258 Identities=16% Similarity=0.141 Sum_probs=152.9 Q ss_pred EEEECCEECCCCEEECCC----C-CCCH-------HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC Q ss_conf 168887335997485346----8-8867-------798887403675241020013687899886268842555410000 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----Y-DKNA-------EVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~-dk~~-------~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362) T Consensus 6 P~~ig~l~lkNRiv~aPm~~~~~~~~dG~~t~~~~~yy~~rA~GG~GlIi~e~~~V~~~-g~~~~~~------------~ 72 (337) T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLIIVEATAVTPE-GRISDKD------------L 72 (337) T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCC-CCCCCCC------------C T ss_conf 70289999778617066688656688999999999999999768972999835886622-1479987------------5 Q ss_pred CCCC----CCHHHHHHHHHHHH----------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC Q ss_conf 2477----77788999876410----------------0012100011045--------42----467887765554206 Q gi|254780434|r 114 GFNN----AGYHTVFSRLSKIQ----------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF 161 (362) Q Consensus 114 Gl~N----~G~~~~~~~l~~~~----------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~ 161 (362) T Consensus 73 ~i~~d~~i~~~~~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~aPS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~ 152 (337) T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAKRAK 152 (337) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 56627789999999999975588688750017755678998107778867889998864999999999999999999999 Q ss_pred -CCCCEEEEE---------CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CHH Q ss_conf -755269830---------3336--5322110000234321111224445565531268851786505777------748 Q gi|254780434|r 162 -TIASYFTIN---------ISSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL------SEE 223 (362) Q Consensus 162 -~~aD~iEiN---------iSCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~------~~~ 223 (362) T Consensus 153 ~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~-----~~~~~v~vRis~~d~~~gG~~~~ 227 (337) T PRK13523 153 EAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKE-----VWDGPLFVRISASDYHPDGLTVQ 227 (337) T ss_pred HCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCHH T ss_conf 8499989981354358998479232489585588889998899999999998-----65886399933655578998989 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999 Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362) Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362) T Consensus 228 d~~~~~~~l~~~GvD~i~vs~G~~--~----~~~~~~~~g~--------~~~~a~~ik~~~--~ipvi~vG~i~~~~~ae 291 (337) T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAV--V----PARIDVYPGY--------QVPFAEHIKEHA--NIATGAVGLITTGAQAE 291 (337) T ss_pred HHHHHHHHHHHCCCCEEEECCCCC--C----CCCCCCCCCC--------CHHHHHHHHHHC--CCCEEEECCCCCHHHHH T ss_conf 999999999974999899578855--4----7767778753--------348999999876--97099983869999999 Q ss_pred HHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 999839-99754527877069789999999999999 Q gi|254780434|r 304 DKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362) Q Consensus 304 e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362) T Consensus 292 ~~l~~G~aD~V~~gR~~iad-Pd~p~kaa~~~~~ei 326 (337) T PRK13523 292 EILNNNRADLIFIGRELLRN-PYFPRIAANELGFEI 326 (337) T ss_pred HHHHCCCCCHHHHHHHHHHC-CCHHHHHHHHCCCCC T ss_conf 99987994799989999989-109999997669999 |
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-12 Score=99.52 Aligned_cols=270 Identities=24% Similarity=0.280 Sum_probs=157.3 Q ss_pred HCCCCCCCCCCEEEECCEECCCCEEECCC-C----CCCHHHHHHHH-H-CC--CCEEECCCCCCCCCCCCCCCCEEEEEC Q ss_conf 10467889631168887335997485346-8----88677988874-0-36--752410200136878998862688425 Q gi|254780434|r 35 SFFPVHSDPRLNTKVAGISLSNPLGMAAG-Y----DKNAEVPIELL-K-LG--FGFVEIGTVTPHPQAGNPRPRVFRLTK 105 (362) Q Consensus 35 ~~~~~~~~~~L~~~~~Gl~~~nPiglAaG-~----dk~~~~~~~l~-~-~G--~G~v~~ktit~~p~~GNp~PR~~r~~~ 105 (362) T Consensus 44 ~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~------------ 111 (360) T COG1304 44 RVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVA------------ 111 (360) T ss_pred CCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH------------ T ss_conf 45788665765157558602588788044455535735699999999980887010032557299952------------ Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCE--EEEEC----CC Q ss_conf 554100002477777889998764100012-100011045-----4246788776555420675526--98303----33 Q gi|254780434|r 106 DRAIINKLGFNNAGYHTVFSRLSKIQPTSP-IGINLGANK-----DSKDFILDYVSGIRLFFTIASY--FTINI----SS 173 (362) Q Consensus 106 ~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~p-i~vsI~~~~-----~s~~~~~dy~~~~~~~~~~aD~--iEiNi----SC 173 (362) T Consensus 112 ----------~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~--a~~~~~h~n~~qe~~~ 179 (360) T COG1304 112 ----------AAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGIS--APALAIHLNVLQEATQ 179 (360) T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHCC T ss_conf ----------1715455659877764999999996698403631575426788999985347--7720133547787348 Q ss_pred CCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 65322110000-----2343211112244455655312688517865-05777748889999987644982999806655 Q gi|254780434|r 174 PNTPGLRSLQK-----KKNLERLLIHVMQTREEEKIKTGKFVPIFLK-ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTL 247 (362) Q Consensus 174 PNt~g~~~~~~-----~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~ 247 (362) T Consensus 180 p~--g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~---~---~~D-~~~a~~tg~~~I~vsnhgg 250 (360) T COG1304 180 PE--GDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGIL---A---PED-AAGAGGTGADGIEVSNHGG 250 (360) T ss_pred CC--CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCC---C---HHH-HHHHCCCCCEEEEEECCCC T ss_conf 76--6656530045899999843787333777767877507758774789---7---888-8763368822899976787 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----CC Q ss_conf 53234577544632211356454246899999997408974899967889999999999839997545278770----69 Q gi|254780434|r 248 SRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY----EG 323 (362) Q Consensus 248 ~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~----~G 323 (362) T Consensus 251 ----------rqlD~g~s-------t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g 313 (360) T COG1304 251 ----------RQLDWGIS-------TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGG 313 (360) T ss_pred ----------CCCCCCCC-------HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC T ss_conf ----------40257877-------6999999999718871799638878778999999937765452599999998556 Q ss_pred H----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf 7----899999999999999838997789616975 Q gi|254780434|r 324 I----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362) Q Consensus 324 p----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362) T Consensus 314 ~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l 348 (360) T COG1304 314 EAGVERVLEIIRKELKIAMALTGAKNIEELKRVPL 348 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE T ss_conf 87899999999999999997428881999655736 |
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=96.71 Aligned_cols=263 Identities=20% Similarity=0.226 Sum_probs=150.9 Q ss_pred EEEEC-CEECCCCEEECCC----CCCCH-------HHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCEEEEECCCCCEEE Q ss_conf 16888-7335997485346----88867-------798887403675241020013687-89988626884255541000 Q gi|254780434|r 46 NTKVA-GISLSNPLGMAAG----YDKNA-------EVPIELLKLGFGFVEIGTVTPHPQ-AGNPRPRVFRLTKDRAIINK 112 (362) Q Consensus 46 ~~~~~-Gl~~~nPiglAaG----~dk~~-------~~~~~l~~~G~G~v~~ktit~~p~-~GNp~PR~~r~~~~~~iiN~ 112 (362) T Consensus 4 P~~l~ng~tlkNRiv~apm~~~~~~~dG~~t~~~~~yy~~rA~gG~glIit~~~~v~~~~~~~~-----------~~~~~ 72 (338) T cd04733 4 PLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEP-----------GIIGN 72 (338) T ss_pred CEECCCCCEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCC-----------CCCCC T ss_conf 9889999598684688988887457999899999999998862783488970389867767799-----------98888 Q ss_pred CCCCCC----CHHHHHHHHHHHHHCCCCCCEEE--------------------C---------C--C-CC----HHHHHH Q ss_conf 024777----77889998764100012100011--------------------0---------4--5-42----467887 Q gi|254780434|r 113 LGFNNA----GYHTVFSRLSKIQPTSPIGINLG--------------------A---------N--K-DS----KDFILD 152 (362) Q Consensus 113 ~Gl~N~----G~~~~~~~l~~~~~~~pi~vsI~--------------------~---------~--~-~s----~~~~~d 152 (362) T Consensus 73 ~~~~~d~~i~~~k~l~d~vh~~--g~~i~~QL~H~Gr~~~~~~~~~~~~~s~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 150 (338) T cd04733 73 VVLESGEDLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDR 150 (338) T ss_pred CCCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 8879999999999999999856--98699951565412450007898887655676655557898864899999999999 Q ss_pred HHHHHHHHC-CCCCEEEEEC---------CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC- Q ss_conf 765554206-7552698303---------33653--2211000023432111122444556553126885178650577- Q gi|254780434|r 153 YVSGIRLFF-TIASYFTINI---------SSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD- 219 (362) Q Consensus 153 y~~~~~~~~-~~aD~iEiNi---------SCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd- 219 (362) T Consensus 151 f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~---~vg~d~~v~~Ris~~d 227 (338) T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRA---AVGPGFPVGIKLNSAD 227 (338) T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEEECHHH T ss_conf 9999999998399989982365548998629876899685798988998899999999999---7199886999845354 Q ss_pred -----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf -----774888999998764498299980665553234577544632211356454246899999997408974899967 Q gi|254780434|r 220 -----LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362) Q Consensus 220 -----~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362) T Consensus 228 ~~~~G~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~------~~~~~~~~~~~~a~~ik~~~--~~Pvi~~G 299 (338) T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKE------STIAREAYFLEFAEKIRKVT--KTPLMVTG 299 (338) T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHC--CCCEEEEC T ss_conf 24799998999999999987699889946885457322477654------44567510599999999984--99799989 Q ss_pred CCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 889999999999839-997545278770697899999999 Q gi|254780434|r 295 GISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 295 GI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 300 ~i~~~~~ae~~l~~g~~DlV~~gR~~iad-Pdl~~k~~~G 338 (338) T cd04733 300 GFRTRAAMEQALASGAVDGIGLARPLALE-PDLPNKLLAG 338 (338) T ss_pred CCCCHHHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHCC T ss_conf 98999999999987995108988999979-0599998675 |
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-11 Score=95.60 Aligned_cols=261 Identities=18% Similarity=0.179 Sum_probs=151.5 Q ss_pred EEEECCEECCCCEEECCC---CCCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC Q ss_conf 168887335997485346---8886-------779888740367524102001368789988626884255541000024 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---YDKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362) T Consensus 4 Pikig~~~lkNRiv~~pm~~~~~~~G~~~~~~~~~y~~rA~gG~GlIi~~~~~v~~~-~~~~~~~------------~~i 70 (343) T cd04734 4 PLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPS-DSPAFGN------------LNA 70 (343) T ss_pred CEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCC------------CCC T ss_conf 804899998883254546788688998999999999999678983799700676465-5689998------------766 Q ss_pred CC----CCHHHHHHHHHHHHHCCCCCCEEE---------------------CC--------CCC----HHHHHHHHHHHH Q ss_conf 77----777889998764100012100011---------------------04--------542----467887765554 Q gi|254780434|r 116 NN----AGYHTVFSRLSKIQPTSPIGINLG---------------------AN--------KDS----KDFILDYVSGIR 158 (362) Q Consensus 116 ~N----~G~~~~~~~l~~~~~~~pi~vsI~---------------------~~--------~~s----~~~~~dy~~~~~ 158 (362) T Consensus 71 ~~d~~i~~~k~l~~~vH~~--G~~i~~QL~H~Gr~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~ 148 (343) T cd04734 71 SDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR 148 (343) T ss_pred CCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8999999999999999735--88189871157766676679986268888866567987944899999999999999999 Q ss_pred HHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------ Q ss_conf 206-755269830---------333653--22110000234321111224445565531268851786505777------ Q gi|254780434|r 159 LFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL------ 220 (362) Q Consensus 159 ~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~------ 220 (362) T Consensus 149 ~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~---~vg~~f~i~~Ris~~~~~~~g~ 225 (343) T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRA---AVGPDFIVGIRISGDEDTEGGL 225 (343) T ss_pred HHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCC T ss_conf 9997399889844577746998469855899676798889998999999999999---8198776158867623568989 Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH Q ss_conf 7488899999876449-829998066555323457754463221135645424689999999740897489996788999 Q gi|254780434|r 221 SEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST 299 (362) Q Consensus 221 ~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~ 299 (362) T Consensus 226 ~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~----~p~~~~~--~g~~~~~a~~ik~~~--~~pvi~~G~i~~~ 297 (343) T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHV----VPSMGMP--PGPFLPLAARIKQAV--DLPVFHAGRIRDP 297 (343) T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHC----CCCCCCC--CCCCHHHHHHHHHHC--CCCEEEECCCCCH T ss_conf 9899999999999669976899656754332221100----6876677--643488999999972--9859997998999 Q ss_pred HHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 9999999839-997545278770697899999999 Q gi|254780434|r 300 KDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 300 ~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 298 ~~ae~~l~~g~~D~V~~gR~~lad-Pd~v~k~~~G 331 (343) T cd04734 298 AEAEQALAAGHADMVGMTRAHIAD-PHLVAKAREG 331 (343) T ss_pred HHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHCC T ss_conf 999999987996216978999978-1199999768 |
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=96.47 Aligned_cols=263 Identities=16% Similarity=0.110 Sum_probs=154.0 Q ss_pred EEEECCEECCCCEEECCC---CC---C----CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC Q ss_conf 168887335997485346---88---8----6779888740367524102001368789988626884255541000024 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---YD---K----NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~d---k----~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362) T Consensus 4 P~kig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~-~g~~~~~~~~i~~d~-~i----- 76 (353) T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNE-AGKLGPGGPVLNSPR-QA----- 76 (353) T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC-CCCCCCCCCCCCCHH-HH----- T ss_conf 83289999788678557463436799786999999999976786348976289880-417699976327999-99----- Q ss_pred CCCCHHHHHHHHHHHH---------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC-CCCCEE Q ss_conf 7777788999876410---------------0012100011045--------42----467887765554206-755269 Q gi|254780434|r 116 NNAGYHTVFSRLSKIQ---------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF-TIASYF 167 (362) Q Consensus 116 ~N~G~~~~~~~l~~~~---------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~-~~aD~i 167 (362) T Consensus 77 --~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgV 154 (353) T cd02930 77 --AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGV 154 (353) T ss_pred --HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf --999999999997699799973147866689888189877788899988659999999999999999999998299989 Q ss_pred EEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC------CCHHHHHHHHH Q ss_conf 830---------333653--2211000023432111122444556553126885178650577------77488899999 Q gi|254780434|r 168 TIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD------LSEEELDDIAV 230 (362) Q Consensus 168 EiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd------~~~~~i~~ia~ 230 (362) T Consensus 155 EIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~---~vg~d~~v~~Ris~~d~~~~G~~~~e~~~~~~ 231 (353) T cd02930 155 EIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA---AVGEDFIIIYRLSMLDLVEGGSTWEEVVALAK 231 (353) T ss_pred EECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 962567614877338754788574579878887999999999999---70998749997360126899989999999999 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC- Q ss_conf 8764498299980665553234577544632211356454246899999997408974899967889999999999839- Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG- 309 (362) Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG- 309 (362) T Consensus 232 ~l~~~GvD~i~vs~G--~~~-~~~~~~~-----~~~p--~g~~~~~a~~ir~~~--~~Pvi~~G~i~~p~~ae~~l~~g~ 299 (353) T cd02930 232 ALEAAGADILNTGIG--WHE-ARVPTIA-----TSVP--RGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGD 299 (353) T ss_pred HHHHCCCCEEEECCC--CCC-CCCCCCC-----CCCC--CHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHCCC T ss_conf 999819999996377--444-6687533-----4577--236699999988754--834896599798999999998799 Q ss_pred CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 997545278770697899999999 Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 300 aD~V~~gR~liad-Pdl~~K~~~G 322 (353) T cd02930 300 ADMVSMARPFLAD-PDFVAKAAAG 322 (353) T ss_pred CCHHHHHHHHHHC-CHHHHHHHCC T ss_conf 6247840998769-3699999818 |
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-11 Score=93.70 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=145.6 Q ss_pred EEEEC-CEECCCCEEECCC---C-CCCH-------HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC Q ss_conf 16888-7335997485346---8-8867-------798887403675241020013687899886268842555410000 Q gi|254780434|r 46 NTKVA-GISLSNPLGMAAG---Y-DKNA-------EVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362) Q Consensus 46 ~~~~~-Gl~~~nPiglAaG---~-dk~~-------~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362) T Consensus 4 P~~igngl~lkNRiv~apm~~~~a~~dG~~t~~~~~yy~~rA-gG~GliIte~~~V~~~-g~~~~~------------~~ 69 (353) T cd04735 4 PFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRA-GGVGMVITGATYVSPS-GIGFEG------------GF 69 (353) T ss_pred CEECCCCCEECCCEEEHHHCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEEECCEEECCC-CCCCCC------------CC T ss_conf 877799969518776600038664679999999999999983-9614999894888613-257899------------87 Q ss_pred CCCCC----CHHHHHHHHHHH-------------------HH-CCCCCCEEECC--------C-CCH----HHHHHHHHH Q ss_conf 24777----778899987641-------------------00-01210001104--------5-424----678877655 Q gi|254780434|r 114 GFNNA----GYHTVFSRLSKI-------------------QP-TSPIGINLGAN--------K-DSK----DFILDYVSG 156 (362) Q Consensus 114 Gl~N~----G~~~~~~~l~~~-------------------~~-~~pi~vsI~~~--------~-~s~----~~~~dy~~~ 156 (362) T Consensus 70 ~i~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 149 (353) T cd04735 70 SADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEA 149 (353) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 64799999999999999985799189751136654661007899865777757677899988619999999999999999 Q ss_pred HHHHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEECCCC---- Q ss_conf 54206-755269830---------333653--221100002343211112244455655-3126885178650577---- Q gi|254780434|r 157 IRLFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEK-IKTGKFVPIFLKISPD---- 219 (362) Q Consensus 157 ~~~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~-~~~~~~~Pi~vKLsPd---- 219 (362) T Consensus 150 A~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~ 229 (353) T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEE 229 (353) T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC T ss_conf 99999839998997546575999853998899847367988999889999999999985400589733675158654147 Q ss_pred --CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf --774888999998764498299980665553234577544632211356454246899999997408974899967889 Q gi|254780434|r 220 --LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362) Q Consensus 220 --~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362) T Consensus 230 ~G~~~~e~~~~~~~l~~~gvD~l~vs~g--~~~---~~~~-------~~~---~~~~~~~~~~~~~~~~~iPvi~~G~i~ 294 (353) T cd04735 230 PGIRMEDTLALVDKLADKGLDYLHISLW--DFD---RKSR-------RGR---DDNQTIMELVKERIAGRLPLIAVGSIN 294 (353) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC--CCC---CCCC-------CCC---CCCHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 9999999999999998479988996037--766---7776-------677---753558999999967898099989999 Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 9999999998399975452787706978999999999 Q gi|254780434|r 298 STKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 298 s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 295 ~~~~ae~~l~~gaD~V~~gR~liad-Pd~~~K~~~Gr 330 (353) T cd04735 295 TPDDALEALETGADLVAIGRGLLVD-PDWVEKIKEGR 330 (353) T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHC-HHHHHHHHCCC T ss_conf 8999999998699829986999979-31999998589 |
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=91.80 Aligned_cols=266 Identities=18% Similarity=0.134 Sum_probs=149.4 Q ss_pred EEEECCEECCCCEEECCCC----CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC Q ss_conf 1688873359974853468----886-------77988874036752410200136878998862688425554100002 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGY----DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG~----dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362) T Consensus 5 P~~ig~~~lkNRi~~apm~~~~~~~dG~~t~~~~~~y~~rA~gG~GlIi~e~~~V~~~-~~~~~~~~~i~~d~-~i---- 78 (336) T pfam00724 5 PIKIGNLTLKNRIVMAPMTRLRALEDGTVPERLAEYYSQRAQGGGTLIITEAVFVDPK-GGGFDNQPGLWDDE-QV---- 78 (336) T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEECHH-HCCCCCCCCCCCHH-HH---- T ss_conf 8158999977842761107763358999999999999999646974899687178820-05799987467689-99---- Q ss_pred CCCCCHHHHHHHHHHHH-------------------HCCCCCCEEECC--------CCC----HHHHHHHHHHHHHHC-C Q ss_conf 47777788999876410-------------------001210001104--------542----467887765554206-7 Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQ-------------------PTSPIGINLGAN--------KDS----KDFILDYVSGIRLFF-T 162 (362) Q Consensus 115 l~N~G~~~~~~~l~~~~-------------------~~~pi~vsI~~~--------~~s----~~~~~dy~~~~~~~~-~ 162 (362) T Consensus 79 ---~~~~~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~A 155 (336) T pfam00724 79 ---EGWKKLTEAVHENGSKIGVQLWHLGREAPPEYLEDLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEA 155 (336) T ss_pred ---HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf ---99999999998559849997035777688233788888887876678898887699999999999999999999982 Q ss_pred CCCEEEEE---------CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------CHHH Q ss_conf 55269830---------3336--5322110000234321111224445565531268851786505777-------7488 Q gi|254780434|r 163 IASYFTIN---------ISSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-------SEEE 224 (362) Q Consensus 163 ~aD~iEiN---------iSCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-------~~~~ 224 (362) T Consensus 156 GfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~---~vg~d~~i~vRis~~d~~~~g~~~~e~ 232 (336) T pfam00724 156 GFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKE---AVGEDRPIGYRLSPDDVFEGGLTGAET 232 (336) T ss_pred CCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCEEEECCCCCCCCCCCCHHH T ss_conf 99989961426789998628765889776788988975489999999999---728776642674652246899884268 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999 Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362) Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362) T Consensus 233 ~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~~---~--~~~~~~~~~~~~~~~~k~~~--~~pvi~~G~i~~~~~ae~ 303 (336) T pfam00724 233 LAQFAYAAGELGVRVLDGTRLA--YIHAIEPRVT---G--PFPVETGQQVENNEFIKKVW--KGPVITVGRINDPEFAAE 303 (336) T ss_pred HHHHHHHHHHHCCCEEECCCCC--EEECCCCCCC---C--CCCCCCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHH T ss_conf 9999999998387756427662--2320244335---7--87756312478999999876--985999699998999999 Q ss_pred HHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 99839-997545278770697899999999 Q gi|254780434|r 305 KIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 305 ~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 304 ~l~~g~~D~V~~gR~~iad-Pd~~~k~~~G 332 (336) T pfam00724 304 IVEEGRADLVAMGRPFLAD-PDLVKKAKEG 332 (336) T ss_pred HHHCCCCEEHHHHHHHHHC-HHHHHHHHCC T ss_conf 9987994436866999979-1399999808 |
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=89.85 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=143.7 Q ss_pred EEEECCEECCCCEEECCC----C-CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCC-CCCCCEEEEECCCCCEEE Q ss_conf 168887335997485346----8-886-------779888740367524102001368789-988626884255541000 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----Y-DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAG-NPRPRVFRLTKDRAIINK 112 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~-dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~G-Np~PR~~r~~~~~~iiN~ 112 (362) T Consensus 4 P~~ig~l~lkNRiv~apm~~~~~~~~dG~~t~~~~~yy~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~~----------~ 73 (382) T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLP----------C 73 (382) T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCC----------C T ss_conf 844899986885277887865666899898999999999996658647895241266665668988878----------7 Q ss_pred CCCCC----CCHHHHHHHHHHHHHCCCCCCEE-----------------------ECCC---------CC----HHHHHH Q ss_conf 02477----77788999876410001210001-----------------------1045---------42----467887 Q gi|254780434|r 113 LGFNN----AGYHTVFSRLSKIQPTSPIGINL-----------------------GANK---------DS----KDFILD 152 (362) Q Consensus 113 ~Gl~N----~G~~~~~~~l~~~~~~~pi~vsI-----------------------~~~~---------~s----~~~~~d 152 (362) T Consensus 74 ~~~~~~~~i~~~k~l~~~vH~--~G~~i~~QL~h~~gr~~~~~~~~~~~~~~pS~~~~~~~~~~~~r~mt~~eI~~ii~~ 151 (382) T cd02931 74 PTYNPTAFIRTAKEMTERVHA--YGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGK 151 (382) T ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 776859999999999999985--489068630665466457654789985788656445688877776899999999999 Q ss_pred HHHHHHHHC-CCCCEEEEEC----------CCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 765554206-7552698303----------336--532211000023432111122444556553126885178650577 Q gi|254780434|r 153 YVSGIRLFF-TIASYFTINI----------SSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD 219 (362) Q Consensus 153 y~~~~~~~~-~~aD~iEiNi----------SCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd 219 (362) T Consensus 152 f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR---~~vg~d~~v~~R~s~~ 228 (382) T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIK---ARCGEDFPVSLRYSVK 228 (382) T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHH---HHHCCCCEEEEEECCC T ss_conf 9999999998499989962453035899854873589886458987885618999999999---9709887389996563 Q ss_pred C--------------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 7--------------------74888999998764498299980665553234577544632211356454246899999 Q gi|254780434|r 220 L--------------------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362) Q Consensus 220 ~--------------------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362) T Consensus 229 ~~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~~~~~~~~~~~~~---------g~~~~~a~~ 299 (382) T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKK---------GMYLPYCKA 299 (382) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCCCC---------CCCHHHHHH T ss_conf 34566545788577788876359999999999998398889647774211010379754676---------314899999 Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 997408974899967889999999999839-9975452787706978999999999 Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 300 ik~~~--~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~iad-P~~v~K~~~G~ 352 (382) T cd02931 300 LKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD-PDVVNKIRRGR 352 (382) T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCCC T ss_conf 99873--9988996896999999999986996543622898869-35999998299 |
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-10 Score=85.87 Aligned_cols=260 Identities=23% Similarity=0.276 Sum_probs=152.2 Q ss_pred EEEECCEECCCCEEECC---------CC--CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC Q ss_conf 16888733599748534---------68--88677988874036752410200136878998862688425554100002 Q gi|254780434|r 46 NTKVAGISLSNPLGMAA---------GY--DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAa---------G~--dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362) T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~-g~~~~------------~~~~ 75 (363) T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPG-GRGYP------------GQPG 75 (363) T ss_pred CEEECCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCC------------CCCC T ss_conf 8147998760523654755454569999888999999998648977799966740755-46589------------9866 Q ss_pred CCC----CCHHHHHHHHHHHHH------------------C--CCCCCEEECC----C--C---C----HHHHHHHHHHH Q ss_conf 477----777889998764100------------------0--1210001104----5--4---2----46788776555 Q gi|254780434|r 115 FNN----AGYHTVFSRLSKIQP------------------T--SPIGINLGAN----K--D---S----KDFILDYVSGI 157 (362) Q Consensus 115 l~N----~G~~~~~~~l~~~~~------------------~--~pi~vsI~~~----~--~---s----~~~~~dy~~~~ 157 (362) T Consensus 76 l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii~~f~~AA 155 (363) T COG1902 76 LWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAA 155 (363) T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 57866738899999999856995999822776133223567876457774425667888886589999999999999999 Q ss_pred HHHC-CCCCEEEE---------ECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---- Q ss_conf 4206-75526983---------0333653--221100002343211112244455655312688517865057777---- Q gi|254780434|r 158 RLFF-TIASYFTI---------NISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLS---- 221 (362) Q Consensus 158 ~~~~-~~aD~iEi---------NiSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~---- 221 (362) T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~---vg~~~~vg~Rls~~d~~~~~ 232 (363) T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA---VGADFPVGVRLSPDDFFDGG 232 (363) T ss_pred HHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCC T ss_conf 999983999899840444499985587557777766885899988999999999997---29886699997745467788 Q ss_pred ---HHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf ---488899999876449-8299980665553234577544632211356454246899999997408974899967889 Q gi|254780434|r 222 ---EEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362) Q Consensus 222 ---~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362) T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~------~~~~~~~-~~-----~~~~~a~~i~~~~--~~pvi~~G~i~ 298 (363) T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERG------GTITVSG-PG-----YQVEFAARIKKAV--RIPVIAVGGIN 298 (363) T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCCCC-CC-----HHHHHHHHHHHHC--CCCEEEECCCC T ss_conf 888999999999998558844799603644578------8744466-41-----2478999998860--78779868979 Q ss_pred CHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999999839-997545278770697899999999999 Q gi|254780434|r 298 STKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSD 336 (362) Q Consensus 298 s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~ 336 (362) T Consensus 299 ~~~~Ae~~l~~g~aDlVa~gR~~lad-P~~v~k~~~g~~~ 337 (363) T COG1902 299 DPEQAEEILASGRADLVAMGRPFLAD-PDLVLKAAEGREL 337 (363) T ss_pred CHHHHHHHHHCCCCCEEEECHHHHCC-CCHHHHHHCCCCC T ss_conf 99999999982998888726366509-2089999737876 |
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-10 Score=87.01 Aligned_cols=259 Identities=17% Similarity=0.163 Sum_probs=139.6 Q ss_pred EEEECCEECCCCEEECC---CC--CCCH---HHHHHHHHCCCCEEECCCCCCCCCC-CCCC--CCEEEEECCCCCEEECC Q ss_conf 16888733599748534---68--8867---7988874036752410200136878-9988--62688425554100002 Q gi|254780434|r 46 NTKVAGISLSNPLGMAA---GY--DKNA---EVPIELLKLGFGFVEIGTVTPHPQA-GNPR--PRVFRLTKDRAIINKLG 114 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAa---G~--dk~~---~~~~~l~~~G~G~v~~ktit~~p~~-GNp~--PR~~r~~~~~~iiN~~G 114 (362) T Consensus 11 P~~ig~l~lkNRiv~ap~~~~~~~~~~~~~~~~~~~rA~GG~GlIite~~~V~~~~~~~~~~~~~l~~---d-~~i---- 82 (370) T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWD---D-GDI---- 82 (370) T ss_pred CCCCCCEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCC---H-HHH---- T ss_conf 83289999898678798988888999579999999984668149996504861030458898877379---8-999---- Q ss_pred CCCCCHHHHHHHHHHHH-------------------HCCCCCCEEECC----------CC-C----HHHHHHHHHHHHHH Q ss_conf 47777788999876410-------------------001210001104----------54-2----46788776555420 Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQ-------------------PTSPIGINLGAN----------KD-S----KDFILDYVSGIRLF 160 (362) Q Consensus 115 l~N~G~~~~~~~l~~~~-------------------~~~pi~vsI~~~----------~~-s----~~~~~dy~~~~~~~ 160 (362) T Consensus 83 ---~~~k~l~d~vH~~G~~i~~QL~H~G~~~~~~~~~~~~~~pS~~~~~~~~~~~~~~r~mt~~eI~~ii~~f~~AA~rA 159 (370) T cd02929 83 ---RNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRA 159 (370) T ss_pred ---HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf ---99999999999669967885335667776434689987864355566779998786689999999999999999999 Q ss_pred C-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------- Q ss_conf 6-755269830---------333653--22110000234321111224445565531268851786505777-------- Q gi|254780434|r 161 F-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-------- 220 (362) Q Consensus 161 ~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-------- 220 (362) T Consensus 160 ~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~---~vg~df~i~~R~s~~~~~~~~g~~ 236 (370) T cd02929 160 RDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKD---AVGDDCAVATRFSVDELIGPGGIE 236 (370) T ss_pred HHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCCCCC T ss_conf 98598989977113559997347745787774689889998999999999999---719987599998941256889998 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899967889999 Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362) Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362) T Consensus 237 ~~~~~~~~~~~~~~~-~d~~~vs~g~--~~~~~~~~~~~~~---------g~~~~~~~~ik~~~--~~Pvi~vG~i~~p~ 302 (370) T cd02929 237 SEGEGVEFVEMLDEL-PDLWDVNVGD--WANDGEDSRFYPE---------GHQEPYIKFVKQVT--SKPVVGVGRFTSPD 302 (370) T ss_pred CHHHHHHHHHHHHCC-CCEEEEEECC--CCCCCCCCCCCCC---------CCCHHHHHHHHHHC--CCCEEEECCCCCHH T ss_conf 889999999997365-7979988555--5665677776786---------43659999999860--88089978979999 Q ss_pred HHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf 999999839-997545278770697899999999 Q gi|254780434|r 301 DALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 301 Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 303 ~ae~~l~~G~aD~V~~gR~llaD-Pd~~~K~~~G 335 (370) T cd02929 303 KMVEVVKSGILDLIGAARPSIAD-PFLPKKIREG 335 (370) T ss_pred HHHHHHHCCCCCHHHHHHHHHHC-CHHHHHHHCC T ss_conf 99999987994264534798769-5399999808 |
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=88.14 Aligned_cols=291 Identities=18% Similarity=0.161 Sum_probs=161.6 Q ss_pred HHCCCCCCCCCCEEEECCEECCCCEEECCCCCCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEE Q ss_conf 1104678896311688873359974853468886-779888740367524102001368789988626884255541000 Q gi|254780434|r 34 LSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKN-AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINK 112 (362) Q Consensus 34 ~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~-~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~ 112 (362) T Consensus 30 ~~~~~y~~~~~~~~~~fg~~~~tp~GpAaGPhtQlaQNiv~s~~~G~Rf~ElKTvQ~~d~~el~kPCI~--a~de~y-N~ 106 (1012) T TIGR03315 30 PKRKFYRADPGKYISLFGEKLETPVGPAAGPHTQLAQNIVASYLTGGRFFELKTVQVLDGLDLPKPCID--AADECY-NV 106 (1012) T ss_pred CHHHCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC--CCCCEE-EE T ss_conf 477631079997651103337888887889558999999999974561578776676044436777636--566234-10 Q ss_pred CCCCCCCH-HHHHHH---------HHHH-----HHCCCCCCEEECCCCC--HHHHHHHHHHHHHHCC------------- Q ss_conf 02477777-889998---------7641-----0001210001104542--4678877655542067------------- Q gi|254780434|r 113 LGFNNAGY-HTVFSR---------LSKI-----QPTSPIGINLGANKDS--KDFILDYVSGIRLFFT------------- 162 (362) Q Consensus 113 ~Gl~N~G~-~~~~~~---------l~~~-----~~~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~------------- 162 (362) T Consensus 107 EWStEl~v~~a~~EYikaw~~l~~l~~~~~~~~~~~f~fnmSvGYdl~GIks~kv~~fi~~m~das~~~~~~~~~~~l~~ 186 (1012) T TIGR03315 107 EWSTELTVPEAYDEYVKAWFLLHLLEKEFELGDPRGFMFNMSVGYDLAGIKSPKVDRYIEEMQDASGTPIFAECRATLKK 186 (1012) T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 21300020788999999999999999970888877617973313174545766689999986633157699999999999 Q ss_pred CCC------EEEEECCCC---CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC------------- Q ss_conf 552------698303336---5322110000--2343211112244455655312688517865057------------- Q gi|254780434|r 163 IAS------YFTINISSP---NTPGLRSLQK--KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP------------- 218 (362) Q Consensus 163 ~aD------~iEiNiSCP---Nt~g~~~~~~--~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP------------- 218 (362) T Consensus 187 ~~~~f~~~~~~~~~~i~~~i~~~~tlST~HGcpp~EIe~I~~yl~~---------ek~l~t~iK~NpTllgy~~~r~~ld 257 (1012) T TIGR03315 187 YIDYFKKVDDEFIDAISPKVCHSVTLSTMHGCPPDEIEAICRYLLE---------EKGLHTFVKLNPTLLGYKFVRDTMD 257 (1012) T ss_pred HHHHHHHCCHHHHHCCCHHHCCCEEEHHCCCCCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 9988753368777318922218466410469897999999999985---------0577668851742015899999998 Q ss_pred ----------------CCCHHHHHHHH----HHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf ----------------77748889999----98764498-2999806655532345775446322113564542468999 Q gi|254780434|r 219 ----------------DLSEEELDDIA----VEVLSHKV-EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIAL 277 (362) Q Consensus 219 ----------------d~~~~~i~~ia----~~a~~~g~-dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i 277 (362) T Consensus 258 ~~g~~yi~~~~~~F~~Dlq~~~a~~ml~rl~~la~~~~l~fGvKltNT~~v~--~~~~~lP~~eMYmSG~~L~plsi~~a 335 (1012) T TIGR03315 258 EMGFDYIVLKEESFSHDLQYEDAVAMLQRLQLLAKEKGLGFGVKLTNTLPVT--IAKGELPGEEMYMSGRALFPLSINLA 335 (1012) T ss_pred HCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE--ECCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 6098527427665344354678999999999999972965658870430056--12687996332035885620158999 Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHH Q ss_conf 99997408974899967889999999999839997545278770-697899999999999999 Q gi|254780434|r 278 AKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLN 339 (362) Q Consensus 278 ~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~ 339 (362) T Consensus 336 ~~l~~~f~g~l~isysgGad~-~ni~~i~~~gi~piT~at~lLkpgGy~r~~q~a~~l~~~~~ 397 (1012) T TIGR03315 336 AKLSREFDGKLQISYSGGADI-FNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETSEY 397 (1012) T ss_pred HHHHHHHCCCCCEEEECCCCH-HCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 999997099751366467542-25999997298500321021687627999999999874023 |
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=83.98 Aligned_cols=250 Identities=19% Similarity=0.213 Sum_probs=137.0 Q ss_pred EEEECCEECCCCEEECCC----CCCCH----HHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC Q ss_conf 168887335997485346----88867----7988874-03675241020013687899886268842555410000247 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----YDKNA----EVPIELL-KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~dk~~----~~~~~l~-~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362) T Consensus 5 P~~Ig~~~lkNRiv~apm~~~~~~~~G~pt~~~~~yy~~rAg~GlIi~e~~~V~~~-g~~~~------------~~~~l~ 71 (338) T cd02933 5 PLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASAGLIITEATQISPQ-GQGYP------------NTPGIY 71 (338) T ss_pred CCEECCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEECCC-CCCCC------------CCCCCC T ss_conf 80689998478728634578745999999999999999858855799723697542-04699------------987322 Q ss_pred CC----CHHHHHHHHHHHH---------------------HCCCCCCEEEC--------------C--C-CC----HHHH Q ss_conf 77----7788999876410---------------------00121000110--------------4--5-42----4678 Q gi|254780434|r 117 NA----GYHTVFSRLSKIQ---------------------PTSPIGINLGA--------------N--K-DS----KDFI 150 (362) Q Consensus 117 N~----G~~~~~~~l~~~~---------------------~~~pi~vsI~~--------------~--~-~s----~~~~ 150 (362) T Consensus 72 ~d~~i~~~~~l~~~vh~~Ga~~~~QL~H~Gr~~~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii 151 (338) T cd02933 72 TDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIV 151 (338) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 39999999999999985589558875026766786355689960536888778775455666688888558999999999 Q ss_pred HHHHHHHHHHC-CCCCEEEEEC---------CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 87765554206-7552698303---------3365--3221100002343211112244455655312688517865057 Q gi|254780434|r 151 LDYVSGIRLFF-TIASYFTINI---------SSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP 218 (362) Q Consensus 151 ~dy~~~~~~~~-~~aD~iEiNi---------SCPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP 218 (362) T Consensus 152 ~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~v---g~d-~i~vRlSp 227 (338) T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI---GAD-RVGIRLSP 227 (338) T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCC-EEEEEECC T ss_conf 99999999999839999998224406899853853268989789998999899999999999972---987-08999657 Q ss_pred CC---------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE Q ss_conf 77---------748889999987644982999806655532345775446322113564542468999999974089748 Q gi|254780434|r 219 DL---------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362) Q Consensus 219 d~---------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362) T Consensus 228 ~~~~~g~~~~~~~~~~~~~~~~l~~~gid~~~v~~~-----~------------~~~~~-~~~~~~~~~~ir~~~--~~p 287 (338) T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-----R------------VAGNP-EDQPPDFLDFLRKAF--KGP 287 (338) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----C------------CCCCC-CCCCHHHHHHHHHHC--CCC T ss_conf 667688788877999999999999859988997268-----7------------77777-776577999999986--997 Q ss_pred EEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHH Q ss_conf 99967889999999999839-9975452787706978999999999 Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGL 334 (362) Q Consensus 290 IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L 334 (362) T Consensus 288 vi~~G~i-~~~~ae~~l~~G~~D~V~~gR~liaD-P~~~~K~~~G~ 331 (338) T cd02933 288 LIAAGGY-DAESAEAALADGKADLVAFGRPFIAN-PDLVERLKNGA 331 (338) T ss_pred EEEECCC-CHHHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCCC T ss_conf 9996998-99999999987996036852999879-13999996399 |
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-09 Score=80.46 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=160.2 Q ss_pred HCCCCCCCCCCEEEECCEECCCCEEECCCCCCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC Q ss_conf 104678896311688873359974853468886-7798887403675241020013687899886268842555410000 Q gi|254780434|r 35 SFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKN-AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362) Q Consensus 35 ~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~-~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362) T Consensus 32 ~~~fy~~~~~~~~~~fg~~~~tp~GPAaGPhtQlaQNiv~syl~G~Rf~ElKTvQ~~d~~ei~kPCI~--a~de~y-N~E 108 (1032) T PRK09853 32 EQQFYSPVKGKTISLFGETCATPVGPAAGPHTQLAQNIVTSYLTGGRFIELKTVQILDRLELEKPCID--AEDECF-NTE 108 (1032) T ss_pred HHHCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC--CCCCEE-EEE T ss_conf 77632079996550001237888887889548999999999974561578776776144436777636--566234-102 Q ss_pred C-----CCCCCHHHHH-----HHHHHH---H---HCCCCCCEEECCCCC--HHHHHHHHHHHHHHC-------------- Q ss_conf 2-----4777778899-----987641---0---001210001104542--467887765554206-------------- Q gi|254780434|r 114 G-----FNNAGYHTVF-----SRLSKI---Q---PTSPIGINLGANKDS--KDFILDYVSGIRLFF-------------- 161 (362) Q Consensus 114 G-----l~N~G~~~~~-----~~l~~~---~---~~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~-------------- 161 (362) T Consensus 109 WStEl~v~~a~~EYikaw~~l~~l~~~~~~~~~~~~f~fnmSVGYdl~GIks~kv~~fi~~m~das~~~~~~~~~~~l~~ 188 (1032) T PRK09853 109 WSTEFTLLKAYDEYLKAWFALHLLEKEFQPSDEGKSFIFNMSVGYDLEGIKSPPMQQFIDNMMDASDHPIFAEYRDTLNK 188 (1032) T ss_pred CCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 13001207889999999999999999848888787459974312074545766689999986633147799999999998 Q ss_pred ------CC-CCEEEE----------ECCCC--CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-- Q ss_conf ------75-526983----------03336--5322110000--2343211112244455655312688517865057-- Q gi|254780434|r 162 ------TI-ASYFTI----------NISSP--NTPGLRSLQK--KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP-- 218 (362) Q Consensus 162 ------~~-aD~iEi----------NiSCP--Nt~g~~~~~~--~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP-- 218 (362) T Consensus 189 ~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~TlST~HGCpp~EIe~I~~yll~---------ek~l~tfiK~NpTl 259 (1032) T PRK09853 189 LLDDFAFLAREGLQEKRESLQALPARISPSMCHSVTLSTMHGCPPHEIEAICRYMLE---------EKGLNTFVKLNPTL 259 (1032) T ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHCCCEEEHHCCCCCHHHHHHHHHHHHH---------CCCCCEEEEECCCC T ss_conf 877776422666433322100223467902217465320369898999999999985---------05776688517420 Q ss_pred ---------------------------CCCHHHHHHHH----HHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf ---------------------------77748889999----98764498-29998066555323457754463221135 Q gi|254780434|r 219 ---------------------------DLSEEELDDIA----VEVLSHKV-EGIIVSNTTLSRKGVQCSDNHEQDGGLSG 266 (362) Q Consensus 219 ---------------------------d~~~~~i~~ia----~~a~~~g~-dGiv~~NT~~~~~~~~~~~~~~~~GGlSG 266 (362) T Consensus 260 LGy~~~r~~ld~~G~dyi~~~~~~F~~Dlq~~~a~~ml~rL~~la~~~~l~fGvKltNT~~v~--~~~~~lP~~eMYmSG 337 (1032) T PRK09853 260 LGYKRVREILDVCGFDYIGLKEESFDHDLQLTDAVEMLERLMALAKEKSLGFGVKLTNTLGTI--NNKGELPGEEMYMSG 337 (1032) T ss_pred CCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE--ECCCCCCCCCCCCCC T ss_conf 058999999986098437417565333343567999999999999972965658870430056--126879963320358 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHH Q ss_conf 6454246899999997408974899967889999999999839997545278770-697899999999999999 Q gi|254780434|r 267 SPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLN 339 (362) Q Consensus 267 ~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~ 339 (362) T Consensus 338 r~L~plsi~~a~~l~~~f~g~l~iSysgGad~-~Ni~~i~~~gi~piT~at~lLkpgGy~r~~q~a~~l~~~~~ 410 (1032) T PRK09853 338 RALFPLSINLAAKLSRAFDGKLPISYSGGASQ-FNIRDIFDTGIRPITMATDLLKPGGYLRLSQCARELEGSDA 410 (1032) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 85620158999999997099751366467542-25999997298500331021687627999999999874023 |
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-08 Score=75.07 Aligned_cols=243 Identities=19% Similarity=0.276 Sum_probs=141.1 Q ss_pred CCCCCCCEEEECC-EECCCCEEECCCCCC--CHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC Q ss_conf 7889631168887-335997485346888--677988874036-752410200136878998862688425554100002 Q gi|254780434|r 39 VHSDPRLNTKVAG-ISLSNPLGMAAGYDK--NAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362) Q Consensus 39 ~~~~~~L~~~~~G-l~~~nPiglAaG~dk--~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362) T Consensus 17 ~r~~Vdl~~~~~~~~~l~iPI-issnMDtV~~~~mA~~la~~Gglgvl------------------hr------------ 65 (325) T cd00381 17 LPSEVDLSTKLTKNITLNIPL-VSAPMDTVTESEMAIAMARLGGIGVI------------------HR------------ 65 (325) T ss_pred CHHHCEEEEEECCCCCCCCCE-EECCCCCCCCHHHHHHHHHCCCEEEE------------------EC------------ T ss_conf 888926768841881448988-86788875889999999977996899------------------43------------ Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 47777788999876410001210001104542467887765554206755269830333653221100002343211112 Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362) Q Consensus 115 l~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362) T Consensus 66 --~~~~e~~~~~v~~vk~~~~v~aaig~~---~~~~~r~~~---l~~ag~d~i~IDvA--hG-------~~~~~~~~ik~ 128 (325) T cd00381 66 --NMSIEEQAEEVRKVKGRLLVGAAVGTR---EDDKERAEA---LVEAGVDVIVIDSA--HG-------HSVYVIEMIKF 128 (325) T ss_pred --CCCHHHHHHHHHHHHCCEEEEEEECCC---HHHHHHHHH---HHHCCCCEEEEECH--HC-------CCHHHHHHHHH T ss_conf --588899999999750476999997668---628999999---99769989998700--03-------45889999999 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468 Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362) Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362) T Consensus 129 ir--------~~~p~~~IiaG---NV~T---~e~a~~L~~~GaD~vkVGiG~GS---~CtTr~~tGv----G~Pq-~sai 186 (325) T cd00381 129 IK--------KKYPNVDVIAG---NVVT---AEAARDLIDAGADGVKVGIGPGS---ICTTRIVTGV----GVPQ-ATAV 186 (325) T ss_pred HH--------HHCCCCCEEEC---CCCC---HHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCCC----CCCH-HHHH T ss_conf 99--------76899756864---5668---99999998669989997575777---7666010178----8745-8899 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-------------------CC------------ Q ss_conf 99999997408974899967889999999999839997545278770-------------------69------------ Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-------------------EG------------ 323 (362) Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-------------------~G------------ 323 (362) T Consensus 187 ~~~a~~~~~~--~v~iiaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~y~Gm~S~~a~~~~~~ 264 (325) T cd00381 187 ADVAAAARDY--GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGG 264 (325) T ss_pred HHHHHHHHCC--CCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCCEEEEEECCCCHHHHCCCCC T ss_conf 9999976344--98589448733107888887528878984621046666896158763827889978765433165776 Q ss_pred --------------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHCCC Q ss_conf --------------------------789999999999999983899778961697 Q gi|254780434|r 324 --------------------------ISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362) Q Consensus 324 --------------------------p~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362) T Consensus 265 ~~~~~~~~~~~~~eG~~~~v~~~g~v~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~ 320 (325) T cd00381 265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKA 320 (325) T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC T ss_conf 54345555101489638998678867889999999998987325867399997578 |
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=78.32 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=138.5 Q ss_pred EEEECCEECCCCEEECCC---C-------CCCHHHHHHHHHCCCCEEECCCCCCC-CCCCCCCCCEEEEECCCCCEEECC Q ss_conf 168887335997485346---8-------88677988874036752410200136-878998862688425554100002 Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---Y-------DKNAEVPIELLKLGFGFVEIGTVTPH-PQAGNPRPRVFRLTKDRAIINKLG 114 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~-------dk~~~~~~~l~~~G~G~v~~ktit~~-p~~GNp~PR~~r~~~~~~iiN~~G 114 (362) T Consensus 4 Pi~Ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~yy~~rA~GG~Gliite~~~V~~~~~~~-~~~~~~~~~d~-~i---- 77 (361) T cd04747 4 PFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASG-DPNVPRFHGED-AL---- 77 (361) T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCCCCCCCCHH-HH---- T ss_conf 8358999988852887748783889989999999999997689610797067105621358-99877758999-99---- Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEE--------------------ECC-----------CCC----HHHHHHHHHHHHH Q ss_conf 47777788999876410001210001--------------------104-----------542----4678877655542 Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQPTSPIGINL--------------------GAN-----------KDS----KDFILDYVSGIRL 159 (362) Q Consensus 115 l~N~G~~~~~~~l~~~~~~~pi~vsI--------------------~~~-----------~~s----~~~~~dy~~~~~~ 159 (362) T Consensus 78 ---~~~r~la~avH~~--G~~~~~QL~H~G~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~mt~eeI~~ii~~f~~AA~r 152 (361) T cd04747 78 ---AGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAAD 152 (361) T ss_pred ---HHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf ---9999999999976--99798700035666666678888988668756667889888879999999999999999999 Q ss_pred HC-CCCCEEEE---------ECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-------- Q ss_conf 06-75526983---------0333653--2211000023432111122444556553126885178650577-------- Q gi|254780434|r 160 FF-TIASYFTI---------NISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD-------- 219 (362) Q Consensus 160 ~~-~~aD~iEi---------NiSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd-------- 219 (362) T Consensus 153 A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlENR~Rf~~Eii~aVr~---~vg~df~vg~Ris~~~~~~~~~~ 229 (361) T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRA---AVGPDFPIILRFSQWKQQDYTAR 229 (361) T ss_pred HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCCCC T ss_conf 998399989951044658998358743889887899879847369999999999---72998759999677657676655 Q ss_pred --CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC- Q ss_conf --77488899999876449829998066555323457754463221135645424689999999740897489996788- Q gi|254780434|r 220 --LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGI- 296 (362) Q Consensus 220 --~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI- 296 (362) T Consensus 230 ~~~~~ee~~~~~~~l~~~GvD~i~~s~~~~-----~~p~-------~~~~~~-----~~~~~~k~~~--~~p~~~~g~~~ 290 (361) T cd04747 230 LADTPDELEALLAPLVDAGVDIFHCSTRRF-----WEPE-------FEGSEL-----NLAGWTKKLT--GLPTITVGSVG 290 (361) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCC-------CCCCCC-----CHHHHHHHHC--CCCEEEECCCH T ss_conf 679999999999999977999898413445-----6765-------677744-----4889988862--89758644410 Q ss_pred -----------------CCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH Q ss_conf -----------------9999999999839-997545278770697899999999 Q gi|254780434|r 297 -----------------SSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362) Q Consensus 297 -----------------~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362) T Consensus 291 ~~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~llaD-P~~v~K~~~G 344 (361) T cd04747 291 LDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD-PAWVAKVREG 344 (361) T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHCC T ss_conf 35677777512454477799999999986994138975999975-4499999859 |
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-06 Score=64.49 Aligned_cols=254 Identities=18% Similarity=0.160 Sum_probs=137.3 Q ss_pred EEEECCEECCCCEEECC--------CCCCC--HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC Q ss_conf 16888733599748534--------68886--779888740367524102001368789988626884255541000024 Q gi|254780434|r 46 NTKVAGISLSNPLGMAA--------GYDKN--AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362) Q Consensus 46 ~~~~~Gl~~~nPiglAa--------G~dk~--~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362) T Consensus 407 P~~lr~ltL~NRIvvSPMcqYsa~dG~ptd~Hl~Hyg~rA~gGaGLIi~EaTaVsp~-G----Ri--tp------~~~GL 473 (770) T PRK08255 407 PFRLRGLTLKNRIVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPE-G----RI--TP------GCPGL 473 (770) T ss_pred CEEECCEEEECCEEECCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-C----CC--CC------CCCCC T ss_conf 875666752065675236535278998980899999999707878799876775676-5----78--99------88775 Q ss_pred CCCCH----HHHHHHHHHH-------------H----------HCCC--------CCCEEECCC---C-----C----HH Q ss_conf 77777----8899987641-------------0----------0012--------100011045---4-----2----46 Q gi|254780434|r 116 NNAGY----HTVFSRLSKI-------------Q----------PTSP--------IGINLGANK---D-----S----KD 148 (362) Q Consensus 116 ~N~G~----~~~~~~l~~~-------------~----------~~~p--------i~vsI~~~~---~-----s----~~ 148 (362) T Consensus 474 w~d~q~~~~krivd~vH~~~~a~i~iQL~HaGRKast~~~w~g~~~P~~~g~W~~vapS~ip~~~~~~~Pr~mt~~eI~~ 553 (770) T PRK08255 474 YNDEQEAAWKRIVDFVHANSDAKIGIQLGHAGRKGSTRLGWEGIDQPLEEGNWPLISASPLPYLPGSQVPREMTRADMDR 553 (770) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 59899999999999999636984798722378786555787778887876898724898887589998875689999999 Q ss_pred HHHHHHHHHHHH-CCCCCEEEE---------ECCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 788776555420-675526983---------033365--32211000023432111122444556553126885178650 Q gi|254780434|r 149 FILDYVSGIRLF-FTIASYFTI---------NISSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362) Q Consensus 149 ~~~dy~~~~~~~-~~~aD~iEi---------NiSCPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362) T Consensus 554 vv~~F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~---~~p~~~Pl~vRi 630 (770) T PRK08255 554 VRDQFVAATRRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRA---VWPADKPMSVRI 630 (770) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCEEEEE T ss_conf 99999999999998399989995234555887538644677543578888777889999999998---678988669998 Q ss_pred CCC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 577------77488899999876449829998066555323457754463221135645424689999999740897489 Q gi|254780434|r 217 SPD------LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362) Q Consensus 217 sPd------~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362) T Consensus 631 SatDw~~gG~t~edsv~la~~l~~~GvD~IdvSsGg~------~~~~~p~~----g~~-yQ--vpfA~~Ir~e~--~i~t 695 (770) T PRK08255 631 SAHDWVEGGNTPDDAVEIARAFKAAGADMIDVSSGQV------SKDEKPVY----GRM-YQ--TPFADRIRNEA--GIAT 695 (770) T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC------CCCCCCCC----CCC-CC--HHHHHHHHHHC--CCCE T ss_conf 5102568999999999999999974998999578888------86677888----876-56--69999999875--9978 Q ss_pred EEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHH Q ss_conf 9967889999999999839-9975452787706978999999 Q gi|254780434|r 291 IGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRII 331 (362) Q Consensus 291 Ig~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~ 331 (362) T Consensus 696 ~AVG~I~~p~~Ae~Il~~GrADlValgR~~L~d-P~W~l~aA 736 (770) T PRK08255 696 IAVGAISEADHVNSIIAAGRADLCALARPHLAD-PAWTLHEA 736 (770) T ss_pred EEECCCCCHHHHHHHHHCCCCCEEEECHHHHCC-CCHHHHHH T ss_conf 996188999999999976998875247776519-95099999 |
|
| >PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-07 Score=67.98 Aligned_cols=226 Identities=15% Similarity=0.182 Sum_probs=127.8 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362) T Consensus 20 kg~~~~~~~~~--g-d-P~~~a~~~~~~Gad~lhlvDl------------------d~a~--------~~~~~n~~~I~~ 69 (252) T PRK13597 20 KGVNFVNLRDA--G-D-PVEAARAYDEAGADELVFLDI------------------SATH--------EERAILLDVVAR 69 (252) T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH T ss_conf 78777786788--8-9-999999999869999999956------------------4666--------686637999999 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CC Q ss_conf 1000121000110454246788776555420675526983033365322110000234321111224445565531--26 Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--TG 207 (362) Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--~~ 207 (362) T Consensus 70 i~~~~~vpiqvGGGIrs~e~~~------~ll~~GadkViigS~a--------~~np~~i~~~~~~fG~q~Iv~~iD~~~~ 135 (252) T PRK13597 70 VAERVFIPLTVGGGVRSLEDAR------KLLLSGADKVSVNSAA--------VRRPELIRELADHFGAQAVVLAIDARWR 135 (252) T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEECHHH--------HHCCHHHHHHHHHCCCCCEEEEEEEEEC T ss_conf 9862698289847713089999------9985698779832666--------7493789999987499652999988861 Q ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 8851-786505777748889999987644982999806655532345775446322113564542468999999974089 Q gi|254780434|r 208 KFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362) Q Consensus 208 ~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362) T Consensus 136 ~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~geil~td--I~rDGt-----------~~G~d-----~~l~~~i~~~~-- 195 (252) T PRK13597 136 GDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS--MDRDGT-----------KEGYD-----LRLTRMVAEAV-- 195 (252) T ss_pred CCCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHCC-- T ss_conf 89741675387275697699999999964899999975--737684-----------44769-----59999998507-- Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7489996788999999999983999754527877069789999999999999983899 Q gi|254780434|r 287 KIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 287 ~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 196 ~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s-----~~e~k~~L~~~~i~ 248 (252) T PRK13597 196 GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIP-----IPELKRYLAEKGVH 248 (252) T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 998999789899999999987899699871276779999-----99999999987895 |
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-06 Score=60.82 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=134.5 Q ss_pred CCCCCCCCEEEECCEECCCCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC Q ss_conf 67889631168887335997485346888--6779888740367524102001368789988626884255541000024 Q gi|254780434|r 38 PVHSDPRLNTKVAGISLSNPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362) Q Consensus 38 ~~~~~~~L~~~~~Gl~~~nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362) T Consensus 20 ~SRseVd~s~~~~~~~~~iPI-iaAnMDTV~~~~mA~~l~k~Gglgv-----------------LHR~~----------- 70 (326) T PRK05458 20 NSRSECDTSVTLGPRTFKLPV-VPANMQTIIDEKIAEWLAENGYFYI-----------------MHRFD----------- 70 (326) T ss_pred CCHHHCEEEEEECCCCCCCCE-EECCCCCCCCHHHHHHHHHCCCEEE-----------------EEECC----------- T ss_conf 887884367985685227888-8589897488899999997898689-----------------98558----------- Q ss_pred CCCCHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 77777889998764100-01210001104542467887765554206755269830333653221100002343211112 Q gi|254780434|r 116 NNAGYHTVFSRLSKIQP-TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362) Q Consensus 116 ~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362) T Consensus 71 ----~e~~~~~~~~~~~~~~~~~iSvGi~---~~~~~~i~~l~-~~~~~~~~i~iDvA--hG-------~~~~~~~~i~~ 133 (326) T PRK05458 71 ----PEARIPFIKDMHERGLIASISVGVK---DDEYDFIDQLA-AEGLTPEYITIDIA--HG-------HSDSVINMIKH 133 (326) T ss_pred ----HHHHHHHHHHCCCCCCEEEEEECCC---HHHHHHHHHHH-HCCCCCCEEEEECC--CC-------CHHHHHHHHHH T ss_conf ----8999999985232372799994799---89999999998-56999777999805--64-------42899999999 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468 Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362) Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362) T Consensus 134 i---k~-----~~~~~~iiaG---NVaT---~e~~~~L~~~Gad~VkVGIG~Gs---~CTTR~~t---Gv-G~p~--~q~ 190 (326) T PRK05458 134 I---KK-----HLPETFVIAG---NVGT---PEAVRELENAGADATKVGIGPGK---VCITKIKT---GF-GTGG--WQL 190 (326) T ss_pred H---HH-----HCCCCCEEEC---CCCC---HHHHHHHHHCCCCEEEECCCCCC---CCCCCCCC---CC-CCCH--HHH T ss_conf 9---98-----7899839965---4318---99999999749999996777987---52035013---54-7758--999 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC--CCH---------------------------- Q ss_conf 99999997408974899967889999999999839997545278770--697---------------------------- Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY--EGI---------------------------- 324 (362) Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~--~Gp---------------------------- 324 (362) T Consensus 191 sai~~ca~~~--~~~iiaDGGi~~~GDi~KAla~GAd~VM~G~~~Ag~~EspG~~~~~~g~~~k~y~Gmas~~~~~~~~~ 268 (326) T PRK05458 191 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGETVEIDGKLYKEYFGSASEFQKGEYKN 268 (326) T ss_pred HHHHHHHHHH--CCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCEEEEEEECCCCHHHCCCCCC T ss_conf 9999999972--79779736858747899998648988986712237777997179789979999874677534788457 Q ss_pred ---------------HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf ---------------89999999999999983899778961 Q gi|254780434|r 325 ---------------SLPKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 325 ---------------~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 269 ~EG~~~~vp~kG~v~~~~~~l~gglrS~m~Y~Ga~~i~el~ 309 (326) T PRK05458 269 VEGKKILVPHKGSLKDTLTEMQQDLQSSISYAGGKDLDAIR 309 (326) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHC T ss_conf 88748987368888999999988877633375888688961 |
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-05 Score=55.95 Aligned_cols=243 Identities=15% Similarity=0.189 Sum_probs=126.1 Q ss_pred CCCCCCCEEEEC----CEEC-CCCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE Q ss_conf 788963116888----7335-997485346888--677988874036752410200136878998862688425554100 Q gi|254780434|r 39 VHSDPRLNTKVA----GISL-SNPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362) Q Consensus 39 ~~~~~~L~~~~~----Gl~~-~nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362) T Consensus 25 SRseV~l~~~~~f~~s~~~~~gIPI-IaAnMDTV~~~~MA~~L~k~Gg--l~---------------vLHR~~------- 79 (347) T PRK05096 25 SRSEVELERQFTFKHSGQSWSGVPI-IAANMDTVGTFEMAKALASFDI--LT---------------AVHKHY------- 79 (347) T ss_pred CHHHEEEEEEEEECCCCCCCCCCCE-EECCCCCCCCHHHHHHHHHCCC--EE---------------EEECCC------- T ss_conf 8302366788853357774468857-9678887285899999998798--58---------------984379------- Q ss_pred ECCCCCCCHHHHHHHHHHHHHC--CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 0024777778899987641000--12100011045424678877655542067552698303336532211000023432 Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPT--SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLE 189 (362) Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~--~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~ 189 (362) T Consensus 80 -------~~ee~~~~~~~~~~~~~~~v~vsiGi~---~~d~~r~~~-i~~~~~~~~~i~iDvA~G~---------~~~~- 138 (347) T PRK05096 80 -------SVEEWAAFINNSSADVLKHVMVSTGTS---DADFEKTKQ-ILALSPALNFICIDVANGY---------SEHF- 138 (347) T ss_pred -------CHHHHHHHHHHCCCCCCCEEEEEEECC---HHHHHHHHH-HHHCCCCCCEEEEECCCCC---------CHHH- T ss_conf -------899999998521434467389999178---789999999-9952899898999779862---------0889- Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCC Q ss_conf 11112244455655312688517865057777488899999876449829998066555323-45775446322113564 Q gi|254780434|r 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNHEQDGGLSGSP 268 (362) Q Consensus 190 ~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~~~~GGlSG~~ 268 (362) T Consensus 139 --~~~i~~ik~-----~~~~~~iiaG---NvaT---~e~~~~L~~~GaD~vkVGIG----~Gs~CtTR~~tGv----G~P 197 (347) T PRK05096 139 --VQFVAKARE-----AWPDKTICAG---NVVT---GEMVEELILSGADIVKVGIG----PGSVCTTRVKTGV----GYP 197 (347) T ss_pred --HHHHHHHHH-----HCCCCEEECC---CHHH---HHHHHHHHHCCCCEEEECCC----CCCCCCCCCCCCC----CCH T ss_conf --999999998-----7899808814---3123---99999999737889997677----8754304522356----730 Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC--CCH--------------------- Q ss_conf 5424689999999740-8974899967889999999999839997545278770--697--------------------- Q gi|254780434|r 269 LFLKSTIALAKIRQRV-GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY--EGI--------------------- 324 (362) Q Consensus 269 i~~~al~~i~~i~~~~-~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~--~Gp--------------------- 324 (362) T Consensus 198 q----~sai~~c~~~~~~~~~~iiaDGGi~~~gDi~KAla~GAd~VM~G~~lAg~~EspG~~~~~~g~~~k~y~Gm~S~~ 273 (347) T PRK05096 198 Q----LSAVIECADAAHGLGGMIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEVVEENGEKFMLFYGMSSES 273 (347) T ss_pred H----HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCEEEEEEECCCHHH T ss_conf 3----789999999860579948956884750479999873898898673103777799618958997999995767198 Q ss_pred -----------------------------HHHHHHHHHHHHHHHHCCCCCHHHHHCC Q ss_conf -----------------------------8999999999999998389977896169 Q gi|254780434|r 325 -----------------------------SLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362) Q Consensus 325 -----------------------------~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362) T Consensus 274 a~~~~~g~~~~~~~~EG~~~~vp~kG~v~~~l~~l~gglrS~m~Y~Ga~~l~el~~~ 330 (347) T PRK05096 274 AMDRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (347) T ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC T ss_conf 887643887754268850899727889899999999898773327587759999758 |
|
| >PRK03220 consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=64.72 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=124.5 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362) T Consensus 20 kg~~~~~~~~~--g-d-P~~~a~~~~~~G~d~lhivDl--d~----------------a~~--------g~~~n~~~I~~ 69 (257) T PRK03220 20 KGVNFENLRDA--G-D-PVELAAVYDAEGADELTFLDV--TA----------------SSS--------GRATMLDVVRR 69 (257) T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC--CC----------------CCC--------CCHHHHHHHHH T ss_conf 57777786788--8-9-999999999869998999908--88----------------756--------76307999999 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126-- Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362) Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362) T Consensus 70 i~~~~~~pi~vGGGIrs~e~~~~------ll~~GadkVvigs~--------a~~~p~~~~~~~~~fG~q~Iv~siD~k~~ 135 (257) T PRK03220 70 TAEQVFIPLTVGGGVRTVEDVDS------LLRAGADKVSVNTA--------AIARPELLAELARRFGSQCIVLSVDARRV 135 (257) T ss_pred HHHCCCCCEEEECCCCCHHHHHH------HHHCCCCEEECHHH--------HHHCCHHHHHHHHHCCCEEEEEEEEEEEC T ss_conf 98506964898478587999999------99819750872066--------77594777899987098669999998862 Q ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf --------885178650577774888999998764498299980665553234577544632211356454246899999 Q gi|254780434|r 208 --------KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362) Q Consensus 208 --------~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362) T Consensus 136 ~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~~~~~~g~geil~td--I~rDGt-----------~~G~d-----~~l~~~ 197 (257) T PRK03220 136 PVGSAPTPSGFEVTTHGGRRGTGIDAVEWAARGAELGVGEILLNS--MDADGT-----------KAGFD-----LEMLRA 197 (257) T ss_pred CCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHH T ss_conf 567743468749997288260287599999998626988899998--868660-----------23789-----699999 Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99740897489996788999999999983999754527877069789999999999999983899 Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 198 i~~~~--~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~-~~s~----~~~k~~l~~~~i~ 255 (257) T PRK03220 198 VRAAV--TVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFG-ELTI----GQVKAALAAAGIT 255 (257) T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCC-CCCH----HHHHHHHHHCCCC T ss_conf 99748--999899878999999999997899799874687889-9889----9999999987597 |
|
| >PRK08649 inositol-5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=63.54 Aligned_cols=269 Identities=18% Similarity=0.252 Sum_probs=134.0 Q ss_pred CCCCCCEEEECCEECCCCEEECCCCCC--CHHHHHHHHHC-CCCEEECC-CCCCCCCCCCCCCCEEE---EECCCCC--E Q ss_conf 889631168887335997485346888--67798887403-67524102-00136878998862688---4255541--0 Q gi|254780434|r 40 HSDPRLNTKVAGISLSNPLGMAAGYDK--NAEVPIELLKL-GFGFVEIG-TVTPHPQAGNPRPRVFR---LTKDRAI--I 110 (362) Q Consensus 40 ~~~~~L~~~~~Gl~~~nPiglAaG~dk--~~~~~~~l~~~-G~G~v~~k-tit~~p~~GNp~PR~~r---~~~~~~i--i 110 (362) T Consensus 31 p~dvd~st~l~~i~L~iPi-vSAaMDTVTE~~MAIamA~~GGiGVIH~~~i~~---R~~~~~~~~~~i~~~~~~~~~~~~ 106 (368) T PRK08649 31 PEDVSTAWQIDAYRFEIPI-IASPMDAVVSPETAIELGRLGGLGVLNLEGLWT---RYEDPEPVLDEIASVGKDAATRLM 106 (368) T ss_pred HHHCEEEEEECCEEECCCE-ECCCCCCCCCHHHHHHHHHCCCCEEEECCCCEE---ECCCHHHHHHHHHCCCHHHHHHHH T ss_conf 7566221887688878857-768876667899999999879968993221231---028878888988703288889999 Q ss_pred EE-CCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCCCCCCCHH Q ss_conf 00-0247777788999876410001210001104542467887765554206755269830---3336532211000023 Q gi|254780434|r 111 NK-LGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN---ISSPNTPGLRSLQKKK 186 (362) Q Consensus 111 N~-~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN---iSCPNt~g~~~~~~~~ 186 (362) T Consensus 107 ~~i~~~p-i~~~li~~ri~~~k~~g~~-~a~~~---~~~~~~~~~~~L--v~aGvDvlvId~~vvd~aH~~------~~~ 173 (368) T PRK08649 107 QELYAEP-IKPELIGKRIAEIRDAGVI-AAVSL---SPQNAQKLGPTV--VEAGADLFVIQGTVVSAEHVS------EGG 173 (368) T ss_pred HHHHHCC-CCHHHHHHHHHHHHHCCCE-EEEEE---CCHHHHHHHHHH--HHCCCCEEEEEEEEEEEHHHC------CCC T ss_conf 9987546-7288999899987642857-99996---246389999999--974998899841475402220------320 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCC Q ss_conf 43211112244455655312688517865057777488899999876449829998066555323-45775446322113 Q gi|254780434|r 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNHEQDGGLS 265 (362) Q Consensus 187 ~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~~~~GGlS 265 (362) T Consensus 174 ~---~l-~~~~~------~~~~~v~vIaG---NVaT---~e~a~~Li~aGADaVKVGIG----pGSICTTRvVa---GvG 230 (368) T PRK08649 174 E---PL-NLKEF------IYELDVPVVVG---GCVT---YTTALHLMRTGAAGVLVGIG----PGAACTSRGVL---GIG 230 (368) T ss_pred H---HH-HHHHH------HCCCCCCEEEE---CCCC---HHHHHHHHHCCCCEEEECCC----CCCCCCCCCEE---CCC T ss_conf 3---56-56643------12379878973---4469---99999999779989994566----88775663401---257 Q ss_pred CCCCCHHHHHHHHHHHHH----C-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH--------------------- Q ss_conf 564542468999999974----0-89748999678899999999998399975452787--------------------- Q gi|254780434|r 266 GSPLFLKSTIALAKIRQR----V-GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM--------------------- 319 (362) Q Consensus 266 G~~i~~~al~~i~~i~~~----~-~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal--------------------- 319 (362) T Consensus 231 vPQlt--AI~~~a~a~~~y~~~~~g~~VpvIADGGIr~sGDi~KAlaaGA~~VMlGsllAGt~EsPG~~~~~gm~~~~~~ 308 (368) T PRK08649 231 VPMAT--AIADCAAARRDYLDETGGRYVHVIADGGIVTSGDICKAIACGADAVMLGSPLARAAEAPGRGFHWGMAAPHPV 308 (368) T ss_pred CHHHH--HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 21699--9999999988655652685464895688586418999987289989877310476668987644333467766 Q ss_pred HCCC---------H--HH----------HHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 7069---------7--89----------999999999999983899778961 Q gi|254780434|r 320 IYEG---------I--SL----------PKRIIQGLSDFLNKENEVNFENIR 350 (362) Q Consensus 320 i~~G---------p--~~----------~~~I~~~L~~~l~~~G~~si~e~i 350 (362) T Consensus 309 ~peG~~~~v~~~g~~~~vi~g~~~~~d~v~qlvGGLrs~MgY~Ga~~i~elq 360 (368) T PRK08649 309 LPRGTRIQVGTTGSLEQILFGPADLPDGTHNLLGALRRSMATLGYSDLKEFQ 360 (368) T ss_pred CCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 8996388557665065612477767533888677998863023747088873 |
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-06 Score=63.33 Aligned_cols=225 Identities=16% Similarity=0.180 Sum_probs=125.2 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCH-HHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777-88999876 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY-HTVFSRLS 128 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~-~~~~~~l~ 128 (362) T Consensus 19 k~~~~~~~~~~--g-d-P~~~a~~~~~~gadel~ivDl------------------d~s~------~~~~~~~~~I~~i~ 70 (253) T PRK02083 19 KGVNFVNLRDA--G-D-PVELAKRYDEEGADELVFLDI------------------TASS------EGRDTMKDVVERVA 70 (253) T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC------CCCHHHHHHHHHHH T ss_conf 78776452688--8-9-999999999879998999956------------------2664------57741799999999 Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--C Q ss_conf 41000121000110454246788776555420675526983033365322110000234321111224445565531--2 Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--T 206 (362) Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--~ 206 (362) T Consensus 71 ~~-~~~p--i~vGGGIrs~e~~~------~ll~~GadkVvigs~a--------~~~p~~i~~~~~~~G~q~Iv~siD~~~ 133 (253) T PRK02083 71 EQ-VFIP--LTVGGGIRSVEDAR------RLLRAGADKVSINSAA--------VADPELITELADRFGSQCIVVAIDAKR 133 (253) T ss_pred HH-CCCC--EEEECCCCCHHHHH------HHHHCCCCEEEECCHH--------HHCCCHHHHHHHHCCCEEEEEEEEEEE T ss_conf 86-3987--78517621389876------8987798789999846--------538535578897469835999999887 Q ss_pred ---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf ---68851786505777748889999987644982999806655532345775446322113564542468999999974 Q gi|254780434|r 207 ---GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR 283 (362) Q Consensus 207 ---~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~ 283 (362) T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~geil~td--I~rDG~-----------~~G~d-----~~l~~~i~~~ 195 (253) T PRK02083 134 DGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELGAGEILLTS--MDQDGT-----------KNGYD-----LELTRAVRDA 195 (253) T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHH T ss_conf 37687189998078412552399999998756987899998--855586-----------67889-----9999999975 Q ss_pred CCCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 08974899967889999999999-83999754527877069789999999999999983899 Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 196 ~--~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~~~~s-----l~~~k~~L~~~~i~ 250 (253) T PRK02083 196 V--SVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHFGEIT-----IGELKAYLAEQGIE 250 (253) T ss_pred C--CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 7--9999998899999999999986798099871277769999-----99999999987896 |
|
| >PRK13129 consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-05 Score=56.78 Aligned_cols=228 Identities=21% Similarity=0.237 Sum_probs=114.8 Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01 Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362) Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362) T Consensus 25 itaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~AD--GpvIq-~A~~~AL~~G~-----~~~~~~~~~~~~r~~~~~ 96 (267) T PRK13129 25 LMAGDPDLETTAEALLILQENGADLIELGIPYSDPLAD--GPVIQ-AAATRALQSGT-----TLEKVLEMLESLKGKLTI 96 (267) T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCC T ss_conf 70718998999999999997799999979988887765--89999-99999997698-----789999999985434788 Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786 Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362) Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362) T Consensus 97 PivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~gl~~I~ 153 (267) T PRK13129 97 PIILFTYYNPLLNRGMERFCEQAAAAG--VAGLVV----PDLP-------LEEAEKLSPIAA----------ERGIDLIL 153 (267) T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCEEEE T ss_conf 889986107898855999999998669--875767----8999-------899999999998----------53981689 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967 Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362) Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362) T Consensus 154 lvaPtt~~~Ri~~i~~~-----~~gFiY~vs---~~Gv--------TG~~--~~~~~~~~~~i~~ik~~t--~~Pv-~vG 212 (267) T PRK13129 154 LVAPTTPAERMKRIAQQ-----SRGFTYLVS---VTGV--------TGER--SQMENRVESLLQQLRQVT--SKPI-AVG 212 (267) T ss_pred EECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCC--------CCCC--CCCCHHHHHHHHHHHHHC--CCCE-EEE T ss_conf 94899968999999816-----898089873---4665--------6765--445088999999999834--8981-788 Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHCC--------CHHHHHHHHHHHHHHHH Q ss_conf -8899999999998399975452787706--------97899999999999999 Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIYE--------GISLPKRIIQGLSDFLN 339 (362) Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~~--------Gp~~~~~I~~~L~~~l~ 339 (362) T Consensus 213 FGIs~~e~v~~~~~~~ADGvIVGSaiV~~i~e~~~~~~~~~v~~fvk~lk~ald 266 (267) T PRK13129 213 FGISGPEQARQVREWGADGAIVGSAFVKRLAEASPGEGLQEAGEFCRELRAAAD 266 (267) T ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC T ss_conf 447999999999854999999878999999865917579999999999999866 |
|
| >PRK13115 consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=57.48 Aligned_cols=220 Identities=15% Similarity=0.193 Sum_probs=110.8 Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH-HCCCCCCEEECCC Q ss_conf 867798887403675241020013687899886268842555410000247777788999876410-0012100011045 Q gi|254780434|r 66 KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ-PTSPIGINLGANK 144 (362) Q Consensus 66 k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~-~~~pi~vsI~~~~ 144 (362) T Consensus 39 ~t~~~i~~l~~~GaDiiElGiPFSDP~AD--GPvIQ-~A~~rAL~~G~-----~~~~~f~~v~~~~~~~~Pivl-M~Y~N 109 (269) T PRK13115 39 TSIAAMTALVESGCDIVEVGLPYSDPVMD--GPVIQ-AATEAALRGGV-----RVRDVFRAVEAISAAGGRALV-MTYWN 109 (269) T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHCCCCCCEEE-HHHHH T ss_conf 99999999996699999979998885666--89999-99999997799-----599999999984157998885-47548 Q ss_pred C-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH Q ss_conf 4-246788776555420675526983033365322110000234321111224445565531268851786505777748 Q gi|254780434|r 145 D-SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEE 223 (362) Q Consensus 145 ~-s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~ 223 (362) T Consensus 110 ~i~~yG~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~gi~~I~LvaPtt~~e 166 (269) T PRK13115 110 PVLRYGVDRFARDLAAAG--GAGLIT----PDLI-------PDEAGEWLAASE----------RHGLDRIFLVAPSSTPE 166 (269) T ss_pred HHHHHCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCEEEEEEECCCCCHH T ss_conf 998736999999999739--980764----7899-------789999999998----------65812899858999889 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH Q ss_conf 8899999876449829998066555323457754463221135--64542468999999974089748999678899999 Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG--SPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362) Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG--~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362) T Consensus 167 Ri~~i~~~a-----~GFIY~Vs~---~------------GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~ 224 (269) T PRK13115 167 RLAETVEAS-----RGFVYAAST---M------------GVTGARDAVSSAAPELVARVRAAS--DIPVCVGLGVSSAAQ 224 (269) T ss_pred HHHHHHHCC-----CCCEEEEEC---C------------CCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEECCCCCHHH T ss_conf 999998448-----880899754---5------------456776444177999999999717--998179727899999 Q ss_pred HHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHHHH Q ss_conf 99999839997545278770----6978999999999999998 Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFLNK 340 (362) Q Consensus 302 a~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l~~ 340 (362) T Consensus 225 ~~~-~~~~aDGvIVGSa~V~~i~~~g~~~v~~~~~el~~~~k~ 266 (269) T PRK13115 225 AAE-IAGYADGVIVGSALVSALLDGGLPAVRALTEELAAGVRR 266 (269) T ss_pred HHH-HHHHCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 999-980299999868999999975979999999999999998 |
|
| >PRK02145 consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=61.97 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=125.1 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362) T Consensus 20 kg~~~~~~~~~g---d-P~~~a~~~~~~GadelhivDl------------------d~a~--------~~~~~~~~~I~~ 69 (257) T PRK02145 20 KGVNFVELRDAG---D-PVEIARRYDEQGADELTFLDI------------------TATS--------DGRDLILPIIEA 69 (257) T ss_pred ECCCCCCEEECC---C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH T ss_conf 577777738888---9-999999999879998999978------------------8876--------675408999999 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126-- Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362) Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362) T Consensus 70 i~~~~~iPi~vGGGIrs~e~~~------~ll~~GadkVii~s~a--------~~np~~v~~~~~~fG~q~Iv~siD~k~~ 135 (257) T PRK02145 70 VASQVFIPLTVGGGVRAVEDVR------RLLNAGADKVSMNSSA--------VANPQLVRDAADKYGSQCIVVAIDAKRV 135 (257) T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEEHHHH--------HHCCCHHHHHHHHCCCCCEEEEEEEEEC T ss_conf 9965687489627730468899------9998199889841556--------6593022457876698344999998733 Q ss_pred ------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf ------88517865057777488899999876449829998066555323457754463221135645424689999999 Q gi|254780434|r 208 ------KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362) Q Consensus 208 ------~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362) T Consensus 136 ~~~~~~~~~~v~~~~~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~ 197 (257) T PRK02145 136 SADGEPPRWEVFTHGGRKATGLDAVEWARKMAELGAGEILLTS--MDRDGT-----------KSGFD-----LALTRAVS 197 (257) T ss_pred CCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHH T ss_conf 6777775089997787143677455765688761878689999--847787-----------78889-----79999998 Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7408974899967889999999999839-99754527877069789999999999999983899 Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 198 ~~~--~ipvIasGGi~s~~di~~~~~~~~~~av~~g~~~~~~~~~-----i~e~k~~l~~~~~~ 254 (257) T PRK02145 198 DAV--PVPVIASGGVGSLQHLADGITEGHADAVLAASIFHYGEHT-----VGEAKRFMAERGIA 254 (257) T ss_pred HCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 626--9989998689999999999980898487653267779989-----99999999987796 |
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.2e-06 Score=60.32 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=121.8 Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641000121 Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362) Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362) T Consensus 11 itaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvAD--GpvIq-~A~~~Al~~--g---~~~~~i~~~~r~-~~~~pi 80 (247) T PRK13125 11 LTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYD--GPVIR-KAHREVSYW--G---LDYWSLLEEVRK-KVGVPT 80 (247) T ss_pred EECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCC--HHHHH-HHHHHHHHC--C---CCHHHHHHHHCC-CCCCCE T ss_conf 718379989999999998647-9999979988987666--09999-999999876--9---989999998505-689988 Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650 Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362) Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362) T Consensus 81 vlM~Y~N-~~~~g~e~F~~~~~~~G--vdGvIi-pDLP-------~e~~ee~~~~~~~~~~----------~gl~~I~lv 139 (247) T PRK13125 81 YIMTYLE-DYVGSLDDLLNTAKEVG--ARGVLF-PDLL-------IDFPDELEKYVELIRR----------YGLAPVFFT 139 (247) T ss_pred EEHHHHH-HHHHHHHHHHHHHHHCC--CCEEEE-CCCC-------CCCHHHHHHHHHHHHH----------CCCCEEEEE T ss_conf 9729889-99976999999999859--975883-3888-------7546789999999997----------698469995 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-C Q ss_conf 577774888999998764498299980665553234577544632211356454246899999997408974899967-8 Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-G 295 (362) Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-G 295 (362) T Consensus 140 sPtt~~~ri~~i~~~s-----~gFvY~~~-~---g------------vTG~~~~~~~~~~i~~ik~~~~-~~Pv-~vGFG 196 (247) T PRK13125 140 SPKFPDRLIRRLSKLS-----PLFIYLGL-Y---P------------ATGVELPVYVERNIKRVRELVG-DVYL-VAGFA 196 (247) T ss_pred CCCCCHHHHHHHHHHC-----CCEEEEEE-E---C------------CCCCCCCCCHHHHHHHHHHHCC-CCCE-EEECC T ss_conf 7998199999999868-----97799994-4---3------------6788773259999999998569-9985-88328 Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHHHHCC Q ss_conf 89999999999839997545278770----697899999999999999838 Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFLNKEN 342 (362) Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l~~~G 342 (362) T Consensus 197 I~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~~~v~~l~~al~e~~ 247 (247) T PRK13125 197 IDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEALSLLKEIRGALDEYG 247 (247) T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf 799999999985589999987899999997698999999999999985259 |
|
| >PRK02621 consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-06 Score=60.14 Aligned_cols=225 Identities=14% Similarity=0.125 Sum_probs=121.9 Q ss_pred CEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH Q ss_conf 73359974853468886779888740367524102001368789988626884255541000024777778899987641 Q gi|254780434|r 51 GISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI 130 (362) Q Consensus 51 Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~ 130 (362) T Consensus 20 ~~~~~~~~~~--g-d-P~~~ak~~~~~gad~lhivDl------------------d~a~~--------~~~~~~~~I~~i 69 (254) T PRK02621 20 GVNFVGLRDA--G-D-PVELACRYSQAGADELVFLDI------------------TATHE--------GRATLIDVVYRT 69 (254) T ss_pred CCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCCC--------CCHHHHHHHHHH T ss_conf 8577784788--8-9-999999999859999999826------------------67656--------754289999999 Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---- Q ss_conf 0001210001104542467887765554206755269830333653221100002343211112244455655312---- Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT---- 206 (362) Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~---- 206 (362) T Consensus 70 ~~~~~ipi~vGGGIrs~e~~~~------ll~~GadkVii~s~--------a~~np~~~~~~~~~fG~q~Iv~siD~k~~~ 135 (254) T PRK02621 70 AEQVFIPLTVGGGISSLEGIKE------LLRAGADKVSLNSA--------AVRDPDLVRQASDRFGSQCIVVAIDARRRK 135 (254) T ss_pred HHHCCCCEEEECCEEEHHHHHH------HHHCCCCEEEECCH--------HHHCCCHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 9867985899633535799999------99749998999886--------764735445568756984339999955353 Q ss_pred -CCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf -68851-7865057777488899999876449829998066555323457754463221135645424689999999740 Q gi|254780434|r 207 -GKFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362) Q Consensus 207 -~~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362) T Consensus 136 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~g~geil~td--I~~DGt-----------~~G~d-----~~l~~~i~~~~ 197 (254) T PRK02621 136 PDNPGWDVYVRGGRENTGLDAVEWAEEVAERGAGEILLTS--MDGDGT-----------QAGYD-----LELTRAIAEAV 197 (254) T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHHC T ss_conf 4788628996688455776799999887762889699988--804797-----------57688-----69999999717 Q ss_pred CCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 89748999678899999999998-3999754527877069789999999999999983899 Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 198 --~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al~~~-~~~l----~e~K~~l~~~~i~ 251 (254) T PRK02621 198 --EIPVIASGGAGCCDHIAEALTEGKAEAALLASLLHYG-QLTI----AEIKADLLARGLP 251 (254) T ss_pred --CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC-CCCH----HHHHHHHHHCCCC T ss_conf --9979997799999999999985898198775787889-9999----9999999977799 |
|
| >PRK01659 consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-06 Score=61.12 Aligned_cols=225 Identities=15% Similarity=0.140 Sum_probs=121.8 Q ss_pred CEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH Q ss_conf 73359974853468886779888740367524102001368789988626884255541000024777778899987641 Q gi|254780434|r 51 GISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI 130 (362) Q Consensus 51 Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~ 130 (362) T Consensus 20 g~~~~~~~~~--g-D-P~~~ak~~~~~Gad~ihivDl------------------d~a~------~--g~~~n~~~I~~i 69 (252) T PRK01659 20 GVNFVGLQDV--G-D-PVEIAAAYNEAGADELVFLDI------------------TATH------E--GRKTMVDVVEKV 69 (252) T ss_pred CCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC------C--CCHHHHHHHHHH T ss_conf 9577784687--8-9-999999999879999999946------------------7665------6--886489999999 Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---- Q ss_conf 0001210001104542467887765554206755269830333653221100002343211112244455655312---- Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT---- 206 (362) Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~---- 206 (362) T Consensus 70 ~~~~~ipi~vGGGIrs~e~~~~------~l~~GadkViigs~a--------~~n~~~i~~~~~~~G~q~IvvsiD~k~~~ 135 (252) T PRK01659 70 AAKVFIPLTVGGGISSVKDMKR------LLRAGADKVSINSAA--------VLRPELITEGADHFGSQCIVVAIDAKYDA 135 (252) T ss_pred HHHCCCCEEEECCEECHHHHHH------HHHCCCCEEEECHHH--------HHCHHHHHHHHHHCCCEEEEEEEEEEEEC T ss_conf 9756974799633200688889------874488559831777--------52915321467646863269999989705 Q ss_pred -CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf -6885178650577774888999998764498299980665553234577544632211356454246899999997408 Q gi|254780434|r 207 -GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362) Q Consensus 207 -~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362) T Consensus 136 ~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~g~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~~~~- 196 (252) T PRK01659 136 EAGKWNVYTHGGRVDTGLDAIAWAKEAVRLGAGEILLTS--MDADGT-----------KNGFD-----LRLTKAISEAV- 196 (252) T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHHC- T ss_conf 688689996899576777799999999976997799998--814585-----------47689-----89999999868- Q ss_pred CCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 97489996788999999999983-999754527877069789999999999999983899 Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 197 -~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~~~s-----l~e~k~~L~~~~~~ 250 (252) T PRK01659 197 -SVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYGETS-----IKEVKAKLREAGVN 250 (252) T ss_pred -CCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf -9999999179999999999974898265575477779999-----99999999987498 |
|
| >PRK00830 consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-06 Score=61.57 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=126.4 Q ss_pred ECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 88733599748534688867798887403675241020013687899886268842555410000247777788999876 Q gi|254780434|r 49 VAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS 128 (362) Q Consensus 49 ~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~ 128 (362) T Consensus 22 vKg~~f~~~~y~gdP----~~~ak~~~~~gadelhivDld~a-~~g-------------------------~~~~~~~I~ 71 (273) T PRK00830 22 VKGVEFVQLRYAGDP----VELAKRYYEDGADELVFLDITAS-HEG-------------------------RATMIDVIE 71 (273) T ss_pred EECCCCCCCEECCCH----HHHHHHHHHCCCCEEEEEEEECC-CCC-------------------------CCCHHHHHH T ss_conf 858677687578899----99999999879998999953246-468-------------------------842799999 Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 41000121000110454246788776555420675526983033365322110000234321111224445565531--- Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--- 205 (362) Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--- 205 (362) T Consensus 72 ~i~~~~~~pi~vGGGIrs~e~~~~------ll~~GadkVvIgS~--------a~~np~~v~~~~~~fGsq~IvvsiD~k~ 137 (273) T PRK00830 72 RTAEEVFIPLTVGGGIRSIEDIRQ------ILRAGADKVSVNTA--------AVKNPEFIREASDIFGSQCIVVAIDCKR 137 (273) T ss_pred HHHHHCCCCEEEECCEEECCCHHH------HHHCCCCEEECHHH--------HHHCCHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 999866995896088437732899------99769863983798--------9859077899998769905999998433 Q ss_pred --------------CCCCCEEEEECC----CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf --------------268851786505----77774888999998764498299980665553234577544632211356 Q gi|254780434|r 206 --------------TGKFVPIFLKIS----PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGS 267 (362) Q Consensus 206 --------------~~~~~Pi~vKLs----Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~ 267 (362) T Consensus 138 ~~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDGt-----------~~G~ 204 (273) T PRK00830 138 NYNPKDNPDKTIVELEDGTCAWYEVVIYGGREFTGIDAVQWAKKVEELGAGEILLTS--MDRDGT-----------KDGY 204 (273) T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCC T ss_conf 766545676214540478742289997078033786799999999864988688878--757796-----------5688 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 45424689999999740897489996788999999999983-999754527877069789999999999999983899 Q gi|254780434|r 268 PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 268 ~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 205 d-----~~l~~~i~~~~--~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~s-----i~e~k~~L~~~~i~ 270 (273) T PRK00830 205 D-----IPITKKISEEV--DIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEYS-----IREVKEYLRERGIP 270 (273) T ss_pred C-----HHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 9-----69999998637--9988998899999999999983898688770056669979-----99999999987796 |
|
| >PRK04281 consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-06 Score=58.77 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=124.1 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362) T Consensus 19 kg~~~~~~~~~--g-d-P~~~ak~~~~~GadelhivDl------------------d~a~--------~~~~~~~~~I~~ 68 (254) T PRK04281 19 KGVNFIGLRDA--G-D-PVEAAKRYNGEGADELTFLDI------------------TASS--------DNRDTILHIIEE 68 (254) T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH T ss_conf 68577785788--8-9-999999999869999999968------------------8987--------775308999999 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--- Q ss_conf 10001210001104542467887765554206755269830333653221100002343211112244455655312--- Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT--- 206 (362) Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~--- 206 (362) T Consensus 69 i~~~~~vpi~vGGGIrs~e~~~------~ll~~GadkViigs~a--------~~np~~l~~~~~~fG~q~Iv~siD~k~~ 134 (254) T PRK04281 69 VAGQVFIPLTVGGGVRTVADIR------RLLNAGADKVSINTAA--------VTRPDLIDEAAGFFGSQAIVAAVDAKAV 134 (254) T ss_pred HHHHCCCCEEEECCEEECHHHH------HHHHCCCCEEEECHHH--------HHCCHHHHHHHHHCCCEEEEEEEEEEEE T ss_conf 9850796289977754518899------9997699889977767--------6492676767875598217999988850 Q ss_pred --CCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf --688-51786505777748889999987644982999806655532345775446322113564542468999999974 Q gi|254780434|r 207 --GKF-VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR 283 (362) Q Consensus 207 --~~~-~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~ 283 (362) T Consensus 135 ~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~geil~td--I~rDGt-----------~~G~d-----~~l~~~i~~~ 196 (254) T PRK04281 135 NPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGAGEILLTG--MDRDGT-----------KQGFN-----LPLTRAVAEA 196 (254) T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHH T ss_conf 24688459997588647754499999998752998999988--857887-----------68768-----6999999861 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 08974899967889999999999839-99754527877069789999999999999983899 Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 197 ~--~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~~~s-l----~eak~~l~~~~i~ 251 (254) T PRK04281 197 V--DIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFGEIA-I----REAKRAMREAGIE 251 (254) T ss_pred C--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-H----HHHHHHHHHCCCC T ss_conf 6--9989997898999999999980898889764377779989-9----9999999986797 |
|
| >PRK02747 consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.4e-06 Score=59.71 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=125.3 Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764 Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362) Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362) T Consensus 19 kg~~~~~~~~~--g--dP~~~ak~~~~~Gadelh~vDl------------------~~a~--------~~~~~~~~lI~~ 68 (257) T PRK02747 19 KGVNFVDLRDA--G--DPVEAARAYDAAGADELCFLDI------------------TASH--------ENRGTMLDVVAR 68 (257) T ss_pred ECCCCCCEEEC--C--CHHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH T ss_conf 58777770788--8--9999999999869998999947------------------6775--------675528999999 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126-- Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362) Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362) T Consensus 69 i~~~~~ipi~vGGGIrs~e~~~------~ll~~GadkViigs~--------a~~np~l~~~~~~~fG~q~Iv~siD~k~~ 134 (257) T PRK02747 69 TAEQCFMPLTVGGGVRTVDDIR------KLLLAGADKVSINSA--------AVARPEFVAEAADKFGSQCIVVAIDAKRV 134 (257) T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEECHH--------HHHCCHHHHHHHHHCCCEEEEEEEEEEEC T ss_conf 9986699889848820738878------998769968983444--------65483477778875596579999987751 Q ss_pred -----CCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf -----8851-7865057777488899999876449829998066555323457754463221135645424689999999 Q gi|254780434|r 208 -----KFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362) Q Consensus 208 -----~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362) T Consensus 135 ~~~~~~~~~~i~~~~~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~ 196 (257) T PRK02747 135 SPAGENDRWEIFTHGGRKPTGIDAVEFAQKVVSLGAGEILLTS--MDRDGT-----------KAGFD-----LPLTRAIA 196 (257) T ss_pred CCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHH T ss_conf 5767787389998898463430399999999970998899998--835573-----------26788-----69999998 Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 740897489996788999999999983-999754527877069789999999999999983899 Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 197 ~~~--~~pvIasGGv~~~~di~~~~~~~~~~av~~g~~~~~~~~~-----l~~ak~~L~~~~i~ 253 (257) T PRK02747 197 DAV--RVPVIASGGVGTLDHLVEGVRDGHATAVLAASIFHFGTYT-----IGEAKAHMAAAGIP 253 (257) T ss_pred HCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 607--9989997799999999999983898499883267769989-----99999999987896 |
|
| >PRK05211 consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-06 Score=59.79 Aligned_cols=227 Identities=18% Similarity=0.175 Sum_probs=126.8 Q ss_pred ECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 88733599748534688867798887403675241020013687899886268842555410000247777788999876 Q gi|254780434|r 49 VAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS 128 (362) Q Consensus 49 ~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~ 128 (362) T Consensus 9 Vk~~~f~~~~~~--g-D-P~~~ak~~~~~gadelhivDld~a-~~g~~-------------------~n---~~~I~~i~ 61 (248) T PRK05211 9 VKGVQFRNHEII--G-D-IVPLAKRYAEEGADELVFYDITAS-SDGRV-------------------VD---KSWVSRVA 61 (248) T ss_pred EECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEECCCC-CCCCC-------------------CH---HHHHHHHH T ss_conf 768576688677--8-9-999999999869998999978677-67872-------------------14---99999999 Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 4100012100011045424678877655542067552698303336532211000023432111122444556553---- Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKI---- 204 (362) Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~---- 204 (362) T Consensus 62 ~~~-~~P--l~vGGGIrs~~~i~------~ll~~GadkViigs~a--------~~np~li~~~~~~fG~q~IvvsiD~~~ 124 (248) T PRK05211 62 EVI-DIP--FCVAGGIKSVEDAR------EILSFGADKISINSPA--------LADPTLITRLADRFGVQCIVVGIDSWF 124 (248) T ss_pred HHC-CCC--EEEECCCCCHHHHH------HHHHCCCCEEEECCHH--------HHCCHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 767-985--89627801389999------9998799889989767--------619618999998579936999997102 Q ss_pred -HCCCCCEEEEECC----CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf -1268851786505----77774888999998764498299980665553234577544632211356454246899999 Q gi|254780434|r 205 -KTGKFVPIFLKIS----PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362) Q Consensus 205 -~~~~~~Pi~vKLs----Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362) T Consensus 125 ~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~--IdrDG~-----------~~G~d-----l~l~~~ 186 (248) T PRK05211 125 DAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNM--MNQDGV-----------RNGYD-----LAQLKK 186 (248) T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHH T ss_conf 555785799982586565304773699999999975986699989--878997-----------27889-----999999 Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 997408974899967889999999999-83999754527877069789999999999999983899 Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362) Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362) T Consensus 187 i~~~~--~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i~-----l~e~k~~L~~~gi~ 245 (248) T PRK05211 187 VRAIC--HVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN-----IGELKQYLAAQGIE 245 (248) T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC-----HHHHHHHHHHCCCC T ss_conf 99746--9999998888999999999986798413304888889999-----99999999987895 |
|
| >PRK13118 consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-05 Score=54.78 Aligned_cols=227 Identities=19% Similarity=0.223 Sum_probs=112.0 Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHC Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641---000 Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPT 133 (362) Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~ 133 (362) T Consensus 23 itaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~AD--GPvIq-~A~~rAL~~--G~---~~~~~~~~v~~~r~~~~~ 94 (269) T PRK13118 23 VTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMAD--GPAIQ-LASERALAA--GQ---GLADVLQMVREFRQGDQT 94 (269) T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--CC---CHHHHHHHHHHHHHCCCC T ss_conf 71718998999999999997699999978988886665--79999-999999967--98---688999999998643899 Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178 Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362) Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362) T Consensus 95 ~PivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----p---DLP----~ee~~~~~~~~~----------~~gl~~I 151 (269) T PRK13118 95 TPVVLMGYLNPIEIYGYERFVAQAKEAG--VDGLIL----V---DLP----PEEADELRAPAQ----------AHGLDFI 151 (269) T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCC--CCEEEC----C---CCC----HHHHHHHHHHHH----------HCCCCHH T ss_conf 9989974000787863999999999859--974645----8---999----789999999999----------7598464 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996 Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362) Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362) T Consensus 152 ~lvaPtt~~~Ri~~i~~~a-----~gFiY~vs---~~Gv--------TG--~~~~~~~~~~~~i~~ik~~t--~~Pv-~v 210 (269) T PRK13118 152 RLTSPTTSDERLPRVLEHA-----SGYLYYVS---LAGV--------TG--AAALDTEHVEEAVARLRRHT--DLPV-VV 210 (269) T ss_pred EEECCCCCHHHHHHHHHCC-----CCCEEEEE---CCCC--------CC--CCCCCHHHHHHHHHHHHHHC--CCCE-EE T ss_conf 0369898789999998437-----88 |