254780451
aconitate hydratase
GeneID in NCBI database: | 8209437 | Locus tag: | CLIBASIA_01680 |
Protein GI in NCBI database: | 254780451 | Protein Accession: | YP_003064864.1 |
Gene range: | -(365407, 368097) | Protein Length: | 896aa |
Gene description: | aconitate hydratase | ||
COG prediction: | [C] Aconitase A | ||
KEGG prediction: | acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] | ||
SEED prediction: | Aconitate hydratase (EC 4.2.1.3) | ||
Pathway involved in KEGG: | Citrate cycle (TCA cycle) [PATH:las00020]
Glyoxylate and dicarboxylate metabolism [PATH:las00630] | ||
Subsystem involved in SEED: | Biogenesis of c-type cytochromes;
TCA Cycle | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 896 | aconitate hydratase [Candidatus Liberibacter asiaticus | |||
315122101 | 897 | aconitate hydratase [Candidatus Liberibacter solanacear | 1 | 0.0 | |
86359524 | 896 | aconitate hydratase [Rhizobium etli CFN 42] Length = 89 | 1 | 0.0 | |
190893792 | 896 | aconitate hydratase [Rhizobium etli CIAT 652] Length = | 1 | 0.0 | |
227823751 | 896 | aconitate hydratase [Sinorhizobium fredii NGR234] Lengt | 1 | 0.0 | |
209551309 | 896 | aconitate hydratase [Rhizobium leguminosarum bv. trifol | 1 | 0.0 | |
222087510 | 906 | aconitate hydratase 1 [Agrobacterium radiobacter K84] L | 1 | 0.0 | |
241206745 | 896 | aconitate hydratase [Rhizobium leguminosarum bv. trifol | 1 | 0.0 | |
116254263 | 896 | aconitate hydratase [Rhizobium leguminosarum bv. viciae | 1 | 0.0 | |
15966982 | 896 | aconitate hydratase [Sinorhizobium meliloti 1021] Lengt | 1 | 0.0 | |
150398277 | 896 | aconitate hydratase [Sinorhizobium medicae WSM419] Leng | 1 | 0.0 |
>gi|315122101|ref|YP_004062590.1| aconitate hydratase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 897 | Back alignment and organism information |
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Score = 1541 bits (3989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 741/896 (82%), Positives = 824/896 (91%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS+LSVGGIDYVYYSLPKAEANGLQGISRLPCS+KVLLENLLRFEDG TV Sbjct: 1 MSQSLDSFNCRSVLSVGGIDYVYYSLPKAEANGLQGISRLPCSIKVLLENLLRFEDGRTV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 T+E I+AFVKWLDNKGTVESEV+YR SRVLMQDFTGVPAVVDLAAMRDAI VLGGDPQ+I Sbjct: 61 TQEHIYAFVKWLDNKGTVESEVAYRPSRVLMQDFTGVPAVVDLAAMRDAICVLGGDPQDI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHSLIVD+ G K ++ RNK+LEYQRNEERY FLKWGQK+F NFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSLIVDHFGKKSSIMRNKELEYQRNEERYCFLKWGQKAFNNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQINLEYL QSVWT+N++GENIAYPDTCVGTDSHTTMINALG+LGWGVGGIEAEAAM Sbjct: 181 GICHQINLEYLAQSVWTQNKDGENIAYPDTCVGTDSHTTMINALGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG PISML+PE+VGFEV+G L+EGVTATDLVLTI Q+LRKEGVVSKFVEFFGSGFE+M L Sbjct: 241 LGQPISMLIPEIVGFEVSGELKEGVTATDLVLTIVQILRKEGVVSKFVEFFGSGFENMAL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATIANMAPEYGATCGFFPVD+ T DYLRLS R +RV LVEAY K QGMWREDIDYE Sbjct: 301 ADRATIANMAPEYGATCGFFPVDKITTDYLRLSNRLENRVALVEAYNKAQGMWREDIDYE 360 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 K+ FTKK+KL LG++ PSV+GPRRPESR+ L EVPS+F+ M++YYKK TL+EKYPV+G Sbjct: 361 KIVFTKKIKLSLGDIVPSVSGPRRPESRIPLGEVPSNFLVAMDQYYKKYDTLEEKYPVEG 420 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF+LKHGDV IA+ITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV+Y Sbjct: 421 YDFYLKHGDVVIAAITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVAY 480 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYLVQAGLVEYL ALGF+LVGFGCTTCIGNSG L +EIS VI++K LVV GVLSGNRNFE Sbjct: 481 EYLVQAGLVEYLNALGFNLVGFGCTTCIGNSGPLNQEISAVINEKKLVVVGVLSGNRNFE 540 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDVEANYLLSPPLVVAYALAG +RKN+ KDPIGE+QQG+PVYL+DIWP DSEIQS+ Sbjct: 541 GRISPDVEANYLLSPPLVVAYALAGTIRKNITKDPIGENQQGNPVYLKDIWPTDSEIQSY 600 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 +N+YVT DLYKKKYS+VFKGDSSWWNI VPESETY+W E STYVRNPPYFE I+ ++ Sbjct: 601 INQYVTRDLYKKKYSNVFKGDSSWWNINVPESETYIWGENSTYVRNPPYFEMIADTNRDV 660 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DICGARILCLLG KITTDHISPAGSIPL+S+A YL Q+G++E DFNQFGTRRGNHEVM Sbjct: 661 SDICGARILCLLGSKITTDHISPAGSIPLESSAGHYLLQQGIEENDFNQFGTRRGNHEVM 720 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 +RGTFSNIRI N+MLG++G+KGGYTIHYPSKEE+FIYDAAMRYK D++PLVVFAG EYGN Sbjct: 721 VRGTFSNIRIFNHMLGKKGRKGGYTIHYPSKEEVFIYDAAMRYKADKIPLVVFAGSEYGN 780 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT+LLGVR+VIAESFERIHRSNLIGMG+IPF+F K +SW+ LNIKGDEII+ Sbjct: 781 GSSRDWAAKGTKLLGVRAVIAESFERIHRSNLIGMGIIPFSFEKDMSWEKLNIKGDEIID 840 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I+ LK ISPRQ+S LEI YSDG K VPIICC+DTLDEIN+LKNGGILQ VLRQ++ Sbjct: 841 IKGLKMISPRQQSILEISYSDGMSKRVPIICCVDTLDEINYLKNGGILQTVLRQIA 896 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86359524|ref|YP_471416.1| aconitate hydratase [Rhizobium etli CFN 42] Length = 896 | Back alignment and organism information |
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Score = 1300 bits (3363), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/896 (70%), Positives = 736/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS LSV G DYVYYSLPKAEANGL G+S+LP SMKVLLENLLRFEDG +V Sbjct: 1 MSKSLDSFNCRSTLSVNGKDYVYYSLPKAEANGLPGVSKLPYSMKVLLENLLRFEDGQSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A WL+NKG VE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKEHILAVAAWLNNKGAVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A +N +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFAKNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGMDNMPL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR++ R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDGETINYLTMSGRTHDRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + FT ++LDLG+V PS+AGP+RPE R++L + S F M+ YKK L+ +Y V+G Sbjct: 360 DLVFTDTLELDLGDVVPSMAGPKRPEGRIALENIASGFAGSMDADYKKPGQLNNRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L IS+ I+ K L+V+GVLSGNRNFE Sbjct: 480 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIVSGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+K+L K+PIGEDQ G+PVYLRDIWP E+Q F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQKDLTKEPIGEDQNGNPVYLRDIWPTSHEVQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD +W ++VP +TY WD+ STYV+NPPYF + K + Sbjct: 600 IQKYVTRELYESKYADVFKGDVNWQAVQVPPGQTYAWDDNSTYVQNPPYFVGMGKKGTGV 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A +YL V DFNQ+GTRRGNHEVM Sbjct: 660 ADIKGARVLGLFGDKITTDHISPAGSIKAASPAGAYLIGHDVAVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEETSIYDAAMQYKTEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++VIA+SFERIHRSNL+GMGVIPF F +G +W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVIPFVFEEGTTWQSLGLKGDELVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L I PR+ +I Y DGT K VP++ +DTLDE+ +L NGGILQ VLR L+ Sbjct: 840 IEGLDKIKPRERKIAKITYGDGTVKEVPLLSRVDTLDEVIYLNNGGILQTVLRDLA 895 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190893792|ref|YP_001980334.1| aconitate hydratase [Rhizobium etli CIAT 652] Length = 896 | Back alignment and organism information |
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Score = 1298 bits (3359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/896 (70%), Positives = 737/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS LSV G DYVYYSLPKAEANGL G+S+LP SMKVLLENLLRFEDG +V Sbjct: 1 MSKSLDSFNCRSTLSVNGKDYVYYSLPKAEANGLPGVSKLPYSMKVLLENLLRFEDGQSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A +WL+NKG VE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKEHILAVAEWLNNKGAVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A +N +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFAKNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGMDNMPL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR++ R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDGETINYLTMSGRTHDRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + FT ++LDLG+V PS+AGP+RPE R++L + S F M+ YKK L +Y V+G Sbjct: 360 DLVFTDTLELDLGDVVPSMAGPKRPEGRIALENIASGFAGSMDADYKKPGQLSNRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L IS+ I+ K L+V+GVLSGNRNFE Sbjct: 480 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIVSGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+K+L K+PIGEDQ G+PVYL+DIWP E+Q F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQKDLTKEPIGEDQNGNPVYLKDIWPTSHEVQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD +W ++VP +TY WD+ STYV+NPPYF + K + Sbjct: 600 IQKYVTRELYESKYADVFKGDVNWQAVQVPPGQTYAWDDNSTYVQNPPYFVGMGKKGTGV 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A +YL V DFNQ+GTRRGNHEVM Sbjct: 660 ADIKGARVLGLFGDKITTDHISPAGSIKAASPAGAYLIGHDVAVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEETSIYDAAMQYKSEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++VIA+SFERIHRSNL+GMGVIPF F +G +W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVIPFVFEEGTTWQSLGLKGDELVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L I PR+ +I YSDGT K VP++ +DTLDE+ +L NGGILQ VLR L+ Sbjct: 840 IEGLDKIKPRERKIAKITYSDGTVKDVPLLSRVDTLDEVIYLNNGGILQTVLRDLA 895 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227823751|ref|YP_002827724.1| aconitate hydratase [Sinorhizobium fredii NGR234] Length = 896 | Back alignment and organism information |
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Score = 1297 bits (3356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 629/896 (70%), Positives = 731/896 (81%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS L+V G+DYVYYSLPKAEANGL G+S+LP SMKVLLENLLR ED +V Sbjct: 1 MSKSLDSFNCRSTLTVNGVDYVYYSLPKAEANGLAGVSKLPYSMKVLLENLLRNEDDRSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TK+ I WL +KGT E+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKKDIENVAAWLSDKGTAENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFARNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWT+ ENGE AYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTREENGEITAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGLDNMTL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDAETINYLTMSGREEQRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 ++ FT ++LDLG+V PS+AGP+RPE R++L + S F T + YKK L +Y V+G Sbjct: 360 ELVFTDTLELDLGDVVPSMAGPKRPEGRIALENIASGFATALENDYKKPGQLANRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ALGF+LVGFGCTTCIGNSG L IS+ I+ K L+ AGVLSGNRNFE Sbjct: 480 EYLAKSGLQTDLDALGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIAAGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+K+L K+PIGED+ G PVYL+DIWP EIQ F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQKDLTKEPIGEDRDGKPVYLKDIWPTSQEIQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT DLY KY+DVFKGD +W ++VP +TY WDE STYV+NPPYF + K I Sbjct: 600 IFKYVTRDLYASKYADVFKGDENWQAVQVPAGQTYAWDEGSTYVQNPPYFVGMGKKGAGI 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A SYL GV DFNQ+GTRRGNHEVM Sbjct: 660 SDIKGARVLGLFGDKITTDHISPAGSIKAASPAGSYLLGHGVTVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE+ IYDAAM YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEEISIYDAAMTYKEEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++VIA+SFERIHRSNL+GMGVIPF F G++W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVIPFVFEAGMTWESLALKGDEVVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L + PR++ +I Y DG+ K VP+IC IDTLDE+ ++ NGGILQ VLR L+ Sbjct: 840 IEGLANVQPREKRVAKITYGDGSVKEVPLICRIDTLDEVTYVNNGGILQTVLRDLA 895 |
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|209551309|ref|YP_002283226.1| aconitate hydratase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 896 | Back alignment and organism information |
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Score = 1296 bits (3355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 627/896 (69%), Positives = 738/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS LSVGG DYVYYSLPKAEANGL G+S+LP SMKVLLENLLRFEDG +V Sbjct: 1 MSKSLDSFNCRSTLSVGGKDYVYYSLPKAEANGLPGVSKLPYSMKVLLENLLRFEDGQSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A +WL+NKG VE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKEHILAVAEWLNNKGAVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A +N +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFAKNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGMDNMPL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR++ R+ LVEAY+K QGMWR D D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDGETINYLTMSGRTHDRIALVEAYSKAQGMWR-DGDGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + FT ++LDLG+V PS+AGP+RPE R++L + + F M+ YKK L+ +Y V+G Sbjct: 360 DLVFTDTLELDLGDVVPSMAGPKRPEGRIALENIATGFAGSMDADYKKPGQLNNRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L IS+ I+ K L+V+GVLSGNRNFE Sbjct: 480 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIVSGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+K+L +PIGEDQ G+PVYL+DIWP E+Q F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQKDLTNEPIGEDQNGNPVYLKDIWPTSHEVQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD +W ++VP +TY WD+ STYV+NPPYF + K + Sbjct: 600 IQKYVTRELYESKYADVFKGDVNWQAVQVPPGQTYAWDDNSTYVQNPPYFVGMGKKGTGV 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A +YL V DFNQ+GTRRGNHEVM Sbjct: 660 SDIEGARVLGLFGDKITTDHISPAGSIKAASPAGAYLIDHEVAVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEETSIYDAAMQYKAEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++V+A+SFERIHRSNL+GMGVIPF F +G +W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVVAQSFERIHRSNLVGMGVIPFVFEEGTTWQSLGLKGDELVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L I PR++ +I Y DGT K VP++ +DTLDE+ +L NGGILQ VLR L+ Sbjct: 840 IEGLDKIKPREKKIAKITYGDGTVKEVPLLSRVDTLDEVVYLNNGGILQTVLRDLA 895 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222087510|ref|YP_002546047.1| aconitate hydratase 1 [Agrobacterium radiobacter K84] Length = 906 | Back alignment and organism information |
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Score = 1295 bits (3351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/896 (69%), Positives = 737/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 +S+SL+SFNCRS L+VGG DYVY+SLPKAEANGL G+++LP SMKVLLENLLRFEDG TV Sbjct: 11 VSKSLDSFNCRSTLTVGGKDYVYFSLPKAEANGLPGVAKLPYSMKVLLENLLRFEDGQTV 70 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A +WL NKGTVE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 71 TKEHILAVAEWLTNKGTVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 130 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEY+RN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 131 NPLVPVDLVIDHSVIVDEFGTPQAFARNVELEYERNGERYRFLKWGQQAFKNFRVVPPGT 190 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 191 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 250 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G +++ L Sbjct: 251 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGLDALPL 310 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD+ T++YL +SGR+ R+ LVEAY+K QGMWR++ D Sbjct: 311 ADRATIGNMGPEYGATCGFFPVDKETLNYLNMSGRTKDRIALVEAYSKAQGMWRDN-DGA 369 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + FT ++LDL +V P++AGP+RPE R+ L + S F T + YKK L +Y V+G Sbjct: 370 DLVFTDTLELDLSDVVPAMAGPKRPEGRIPLENIASGFATSLETEYKKPGQLSNRYAVEG 429 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLKSKPWVKTS APGSQV Sbjct: 430 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKSKPWVKTSLAPGSQVVG 489 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L +S+ I+ K L+V+GVLSGNRNFE Sbjct: 490 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPVSKTINDKGLIVSGVLSGNRNFE 549 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+ +L K+PIGEDQ G PV+L+DIWP EIQ F Sbjct: 550 GRISPDVQANYLASPPLVVAYALAGTVQLDLTKEPIGEDQDGKPVFLKDIWPSSHEIQEF 609 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD++W +++P +TY WD+ STYV+NPPYF + K I Sbjct: 610 ILKYVTRELYESKYADVFKGDANWQAVQIPPGQTYAWDDNSTYVQNPPYFVGMGKTGAGI 669 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A SYL GV DFNQ+GTRRGNHEVM Sbjct: 670 SDIKGARVLGLFGDKITTDHISPAGSIKAASPAGSYLLGHGVGVADFNQYGTRRGNHEVM 729 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE+ IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 730 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEEMSIYDAAMQYKAEGVPLVIFAGVEYGN 789 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGVR+V+A+SFERIHRSNL+GMGVIPF F G +W L++KGDE++ Sbjct: 790 GSSRDWAAKGTNLLGVRAVVAQSFERIHRSNLVGMGVIPFVFEDGTTWATLDLKGDEVVT 849 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L+ I PR+ ++ Y DGT + +PIIC IDTLDE+ ++ NGGILQ VLR L+ Sbjct: 850 IEGLEDIKPRERKIAKVTYGDGTVRDIPIICRIDTLDEVVYVNNGGILQTVLRDLA 905 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241206745|ref|YP_002977841.1| aconitate hydratase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 896 | Back alignment and organism information |
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Score = 1294 bits (3349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/896 (69%), Positives = 737/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS LSV G DYVYYSLPKAEANGL G+S+LP SMKVLLENLLRFEDG +V Sbjct: 1 MSKSLDSFNCRSTLSVNGKDYVYYSLPKAEANGLAGVSKLPYSMKVLLENLLRFEDGQSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A +WL+NKG VE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKEHILAVAEWLNNKGAVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFARNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGMDNMPL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR++ R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDGETINYLTMSGRTHDRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 ++ FT ++LDL +V PS+AGP+RPE R+SL + + F M+ YKK L+ +Y V+G Sbjct: 360 ELVFTDTLELDLNDVVPSMAGPKRPEGRISLENIATGFAGSMDADYKKPGQLNNRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L IS+ I+ K L+V+GVLSGNRNFE Sbjct: 480 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIVSGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+ +L K+PIGEDQ G+PVYL+DIWP E+Q F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQTDLTKEPIGEDQSGNPVYLKDIWPTSKEVQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD +W +++P +TY WD+ STYV+NPPYF + K + Sbjct: 600 ILKYVTRELYESKYADVFKGDVNWQAVQIPPGQTYAWDDNSTYVQNPPYFVGMGKKGSGV 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A +YL V DFNQ+GTRRGNHEVM Sbjct: 660 SDIKGARVLGLFGDKITTDHISPAGSIKAASPAGAYLIDHDVAVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEETSIYDAAMQYKQEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++V+A+SFERIHRSNL+GMG+IPF F +G +W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVVAQSFERIHRSNLVGMGIIPFVFEEGTTWQSLGLKGDELVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L+ I PR++ I Y DGT K VP++ +DTLDE+ +L NGGILQ VLR L+ Sbjct: 840 IEGLEKIKPREKKIARITYGDGTVKEVPLLSRVDTLDEVVYLNNGGILQTVLRDLA 895 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|116254263|ref|YP_770101.1| aconitate hydratase [Rhizobium leguminosarum bv. viciae 3841] Length = 896 | Back alignment and organism information |
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Score = 1293 bits (3345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 626/896 (69%), Positives = 736/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS LSV G DYVYYSLPKAEANGL G+S+LP SMKVLLENLLRFEDG +V Sbjct: 1 MSKSLDSFNCRSTLSVNGKDYVYYSLPKAEANGLAGVSKLPYSMKVLLENLLRFEDGQSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKE I A +WL+NKG VE+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKEHILAVAEWLNNKGAVENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPQAFARNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWTK E+GE IAYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQTVWTKEEDGETIAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGMDNMPL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR++ R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDGETINYLTMSGRTHDRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 ++ FT ++LDL +V PS+AGP+RPE R+SL + + F M+ YKK L +Y V+G Sbjct: 360 ELVFTDTLELDLSDVVPSMAGPKRPEGRISLENIATGFAGSMDTDYKKPGQLSNRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 DF L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDFDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVG 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L IS+ I+ K L+V+GVLSGNRNFE Sbjct: 480 EYLAKSGLQADLDKLGFNLVGFGCTTCIGNSGPLPAPISKTINDKGLIVSGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG V+ +L K+PIGEDQ G+PVYL+DIWP E+Q F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGTVQMDLTKEPIGEDQSGNPVYLKDIWPTSKEVQEF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY+ KY+DVFKGD +W ++VP +TY WD+ STYV+NPPYF + K + Sbjct: 600 ILKYVTRELYESKYADVFKGDVNWQAVQVPPGQTYAWDDNSTYVQNPPYFVGMGKKGTGV 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A +YL V DFNQ+GTRRGNHEVM Sbjct: 660 SDIKGARVLGLFGDKITTDHISPAGSIKAASPAGAYLIGHDVAVADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEETSIYDAAMQYKQEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++V+A+SFERIHRSNL+GMG+IPF F +G +W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVVAQSFERIHRSNLVGMGIIPFVFEEGTTWQSLGLKGDELVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L+ I PR++ I Y DGT K VP++ +DTLDE+ +L NGGILQ VLR L+ Sbjct: 840 IEGLEKIKPREKKIARITYGDGTVKEVPLLSRVDTLDEVVYLNNGGILQTVLRDLA 895 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|15966982|ref|NP_387335.1| aconitate hydratase [Sinorhizobium meliloti 1021] Length = 896 | Back alignment and organism information |
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Score = 1292 bits (3344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/896 (69%), Positives = 736/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS L+V G+DYVYYSLPKAEANGL GIS+LP SMKVLLENLLR EDG +V Sbjct: 1 MSKSLDSFNCRSTLTVNGVDYVYYSLPKAEANGLAGISKLPYSMKVLLENLLRNEDGRSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TK+ I WL +KGT E+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TKKDIENIAAWLGDKGTAENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEYQRN ERYRFLKWGQ++FKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPTAFARNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWT+ E+GE AYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQAVWTREEDGEVTAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGLDNMTL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDAETINYLTISGREEQRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 ++ FT ++LDLG+V PS+AGP+RPE R++L + S F ++ YKK L +Y V+G Sbjct: 360 ELVFTDTLELDLGDVVPSMAGPKRPEGRIALENIASGFAAALDNDYKKPGQLANRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 D+ L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK++PWVKTS APGSQV Sbjct: 420 TDYDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTQPWVKTSLAPGSQVVA 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L EIS+ I+ K L+ AGVLSGNRNFE Sbjct: 480 EYLSKSGLQTDLDKLGFNLVGFGCTTCIGNSGPLPTEISKTINDKGLIAAGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG+V+K+L K+PIGED+ G PVYLRDIWP EIQ F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGSVQKDLTKEPIGEDRDGQPVYLRDIWPTSQEIQDF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + +YVT +LY KY+DVFKGD++W ++VP +TY WDE STYV+NPPYF + K I Sbjct: 600 IFRYVTRELYATKYADVFKGDANWQAVQVPAGQTYAWDEGSTYVQNPPYFVGMGKKGAGI 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI AR+L L GDKITTDHISPAGSI S A +YL + GV DFNQ+GTRRGNHEVM Sbjct: 660 SDIKNARVLGLFGDKITTDHISPAGSIKAASPAGAYLLEHGVGIADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE+ IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEEMSIYDAAMQYKEEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++VIA+SFERIHRSNL+GMGV+PF F +G++W++L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVVPFVFEEGMTWESLGLKGDEVVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L + PR++ +I Y DG+ K VP+IC IDTLDE+ ++ NGGILQ VLR L+ Sbjct: 840 IENLANVQPREKRVAKITYGDGSVKEVPLICRIDTLDEVTYVNNGGILQTVLRDLA 895 |
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|150398277|ref|YP_001328744.1| aconitate hydratase [Sinorhizobium medicae WSM419] Length = 896 | Back alignment and organism information |
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Score = 1292 bits (3344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/896 (69%), Positives = 735/896 (82%), Gaps = 1/896 (0%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MS+SL+SFNCRS L+V G+DY+YYSLPKAEANGL G+S+LP SMKVLLENLLR EDG +V Sbjct: 1 MSKSLDSFNCRSTLAVNGVDYIYYSLPKAEANGLAGVSKLPYSMKVLLENLLRNEDGRSV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 T++ I WL++KGT E+E++YR +RVLMQDFTGVPAVVDLAAMRDA+V LGGDP+ I Sbjct: 61 TRKDIENIAAWLNDKGTAENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHS+IVD G A RN +LEYQRN ERYRFLKWGQ++F+NFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSVIVDEFGTPTAFARNVELEYQRNGERYRFLKWGQQAFQNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQ+NLEYLGQ+VWT+ E+GE AYPDTCVGTDSHTTMIN LG+LGWGVGGIEAEAAM Sbjct: 181 GICHQVNLEYLGQAVWTREEDGEITAYPDTCVGTDSHTTMINGLGVLGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LG P+SMLLPEV+GF++TG L+EGVTATDLVLT+ QMLRK+GVVSKFVEFFG G ++M L Sbjct: 241 LGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGLDNMTL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATI NM PEYGATCGFFPVD TI+YL +SGR R+ LVEAY+K QGMWRE D Sbjct: 301 ADRATIGNMGPEYGATCGFFPVDSETINYLTISGREEQRIALVEAYSKAQGMWREG-DGS 359 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 ++ FT ++LDLG V PS+AGP+RPE R++L + S F + ++ YKK L +Y V+G Sbjct: 360 ELVFTDTLELDLGEVVPSMAGPKRPEGRIALENIASGFASSLDNDYKKPGQLANRYAVEG 419 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 D+ L HGDVAIA+ITSCTNT NPSV+I AGLLARNAV GLK+KPWVKTS APGSQV Sbjct: 420 TDYDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTKPWVKTSLAPGSQVVA 479 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL ++GL L+ LGF+LVGFGCTTCIGNSG L EIS+ I+ K L+ AGVLSGNRNFE Sbjct: 480 EYLSKSGLQTDLDKLGFNLVGFGCTTCIGNSGPLPAEISKTINDKGLIAAGVLSGNRNFE 539 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDV+ANYL SPPLVVAYALAG+V+K+L K+P+GED+ G PVYL+DIWP EIQ F Sbjct: 540 GRISPDVQANYLASPPLVVAYALAGSVQKDLTKEPLGEDRNGQPVYLKDIWPTSQEIQDF 599 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 + KYVT +LY KY+DVFKGD++W ++VP +TY WDE STYV+NPPYF + K I Sbjct: 600 IFKYVTRELYATKYADVFKGDANWQAVQVPAGQTYAWDEGSTYVQNPPYFVGMGKKGAGI 659 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 DI GAR+L L GDKITTDHISPAGSI S A YL + GV DFNQ+GTRRGNHEVM Sbjct: 660 SDIKGARVLGLFGDKITTDHISPAGSIKAASPAGGYLLEHGVGIADFNQYGTRRGNHEVM 719 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+NIRI N+MLG GK+GGYTIHYPSKEE+ IYDAAM+YK + VPLV+FAGVEYGN Sbjct: 720 MRGTFANIRIRNHMLGPNGKEGGYTIHYPSKEEMSIYDAAMQYKAEGVPLVIFAGVEYGN 779 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGT LLGV++VIA+SFERIHRSNL+GMGVIPF F +G +W+ L +KGDE++ Sbjct: 780 GSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVIPFVFEEGTNWEALGLKGDEVVT 839 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I L + PR++ +I Y DG+ K VP+IC IDTLDE+ ++ NGGILQ VLR L+ Sbjct: 840 IENLANVQPREKRVAKITYGDGSVKEVPLICRIDTLDEVTYVNNGGILQTVLRDLA 895 |
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 896 | aconitate hydratase [Candidatus Liberibacter asiaticus | ||
KOG0452 | 892 | KOG0452, KOG0452, KOG0452, RNA-binding translational re | 0.0 | |
PRK09277 | 888 | PRK09277, PRK09277, aconitate hydratase; Validated | 0.0 | |
PRK12881 | 889 | PRK12881, acnA, aconitate hydratase; Provisional | 0.0 | |
TIGR01341 | 876 | TIGR01341, aconitase_1, aconitate hydratase 1 | 0.0 | |
PTZ00092 | 898 | PTZ00092, PTZ00092, aconitate hydratase-like protein; P | 0.0 | |
PLN00070 | 936 | PLN00070, PLN00070, aconitate hydratase | 0.0 | |
TIGR02333 | 858 | TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydrat | 0.0 | |
COG1048 | 861 | COG1048, AcnA, Aconitase A [Energy production and conve | 0.0 | |
cd01586 | 404 | cd01586, AcnA_IRP, Aconitase A catalytic domain | 0.0 | |
pfam00330 | 464 | pfam00330, Aconitase, Aconitase family (aconitate hydra | 1e-135 | |
cd01351 | 389 | cd01351, Aconitase, Aconitase catalytic domain; Aconita | 9e-75 | |
cd01585 | 380 | cd01585, AcnA_Bact, Aconitase catalyzes the reversible | 6e-43 | |
cd01584 | 412 | cd01584, AcnA_Mitochondrial, Aconitase catalyzes the re | 2e-42 | |
PRK00402 | 418 | PRK00402, PRK00402, 3-isopropylmalate dehydratase large | 9e-38 | |
cd01580 | 171 | cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain | 1e-73 | |
pfam00694 | 131 | pfam00694, Aconitase_C, Aconitase C-terminal domain | 5e-39 | |
cd01579 | 121 | cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swi | 1e-13 | |
cd01578 | 149 | cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase | 2e-12 | |
PRK07229 | 646 | PRK07229, PRK07229, aconitate hydratase; Validated | 4e-68 | |
KOG0453 | 778 | KOG0453, KOG0453, KOG0453, Aconitase/homoaconitase (aco | 5e-67 | |
TIGR01340 | 745 | TIGR01340, aconitase_mito, aconitate hydratase, mitocho | 5e-59 | |
TIGR01342 | 658 | TIGR01342, acon_putative, aconitate hydratase, putative | 1e-59 | |
cd01583 | 382 | cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes | 5e-43 | |
COG0065 | 423 | COG0065, LeuC, 3-isopropylmalate dehydratase large subu | 2e-41 | |
TIGR02086 | 412 | TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, la | 3e-36 | |
TIGR01343 | 412 | TIGR01343, hacA_fam, homoaconitate hydratase family pro | 1e-31 | |
TIGR02083 | 419 | TIGR02083, LEU2, 3-isopropylmalate dehydratase, large s | 2e-31 | |
PRK12466 | 471 | PRK12466, PRK12466, isopropylmalate isomerase large sub | 4e-27 | |
cd01582 | 363 | cd01582, Homoaconitase, Homoaconitase and other unchara | 1e-25 | |
TIGR00139 | 712 | TIGR00139, h_aconitase, homoaconitase | 3e-24 | |
cd01581 | 436 | cd01581, AcnB, Aconitate hydratase B catalyses the form | 4e-06 | |
TIGR00170 | 465 | TIGR00170, leuC, 3-isopropylmalate dehydratase, large s | 1e-22 | |
PRK05478 | 466 | PRK05478, PRK05478, isopropylmalate isomerase large sub | 2e-16 | |
COG1049 | 852 | COG1049, AcnB, Aconitase B [Energy production and conve | 1e-06 | |
TIGR00117 | 844 | TIGR00117, acnB, aconitate hydratase 2 | 2e-04 | |
cd00404 | 88 | cd00404, Aconitase_swivel, Aconitase swivel domain | 3e-13 | |
cd01577 | 91 | cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3 | 5e-08 | |
PRK14023 | 166 | PRK14023, PRK14023, homoaconitate hydratase small subun | 3e-07 | |
COG0066 | 191 | COG0066, LeuD, 3-isopropylmalate dehydratase small subu | 3e-06 | |
PRK00439 | 163 | PRK00439, leuD, 3-isopropylmalate dehydratase small sub | 6e-06 | |
PRK14812 | 119 | PRK14812, PRK14812, hypothetical protein; Provisional | 3e-04 | |
PRK11413 | 751 | PRK11413, PRK11413, putative hydratase; Provisional | 8e-09 | |
TIGR02087 | 154 | TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, sm | 4e-07 | |
PRK09238 | 835 | PRK09238, PRK09238, bifunctional aconitate hydratase 2/ | 5e-04 |
>gnl|CDD|35673 KOG0452, KOG0452, KOG0452, RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification, Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Score = 1039 bits (2687), Expect = 0.0 Identities = 453/893 (50%), Positives = 607/893 (67%), Gaps = 26/893 (2%) Query: 14 LSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLD 73 L G Y Y+ LPK + +LP S++VLLE+ +R D V K+ + + W Sbjct: 16 LPKPGGVYKYFDLPKLNSR----YDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDW-K 70 Query: 74 NKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHS 133 N + EV ++ +RV++QDFTGVPAVVD AAMRDA+ LGGDP+ INPL PVDLVIDHS Sbjct: 71 NTQKKQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHS 130 Query: 134 LIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQ 193 + VD++ + DA+ +N++LE++RN+ER+ FLKWG ++F N +VPPG+GI HQ+NLEYL + Sbjct: 131 VQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLAR 190 Query: 194 SVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253 V+ +++ YPD+ VGTDSHTTMI+ LG+LGWGVGGIEAEA MLG PISM+LPEV+ Sbjct: 191 VVF----ESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVI 246 Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEY 313 G+++TG L VT+TDLVLTIT+ LR+ GVV KFVEFFG G + +ADRATIANM PEY Sbjct: 247 GYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEY 306 Query: 314 GATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE-KVAFTKKMKLDL 372 GAT GFFPVD T+ YL+ +GRS ++D++E Y K M+R+ D +T+ ++LDL Sbjct: 307 GATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDL 366 Query: 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFH 424 G V PSV+GP+RP R+++S++ + F + ++ ++ + ++ G Sbjct: 367 GTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAK 426 Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484 LKHG V IA+ITSCTNT NPSVM+GAGLLA+ AV GL KP++KTS +PGS V +YL Sbjct: 427 LKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLS 486 Query: 485 QAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRIS 544 ++G++ YLE LGF +VG+GC TCIGNSG L + + I Q LV AGVLSGNRNFEGR+ Sbjct: 487 ESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVH 546 Query: 545 PDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKY 604 P+ ANYL SPPLVVAYA+AG V + +P+G D G V+LRDIWP E+ ++ Sbjct: 547 PNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEH 606 Query: 605 VTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDIC 664 V ++K+ Y + G+ W +EVP S+ Y WD KSTY++ PP+FE +++ +P I Sbjct: 607 VIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGPQSIE 666 Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGT 724 A L LGD +TTDHISPAGSI S AA YL +RG+ +DFN +G+RRGN VM RGT Sbjct: 667 DAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGT 726 Query: 725 FSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSR 784 F+NIR+ N +L + G K T+H PS EEL ++DAA RYK + +PL++ AG EYG+GSSR Sbjct: 727 FANIRLVNKLLSKVGPK---TVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSR 783 Query: 785 DWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR-K 843 DWAAKG LLGV++VIAES+ERIHRSNL+GMG+IP F G L + G E I Sbjct: 784 DWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLP 843 Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 + P Q+ T+ + F C DT E+ + KNGGIL ++R+LS Sbjct: 844 ENILKPGQDITVTTD-TGKVFVC---TLRFDTEVELTYYKNGGILNYMIRKLS 892 |
Length = 892 |
>gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated | Back alignment and domain information |
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Score = 1620 bits (4198), Expect = 0.0 Identities = 559/892 (62%), Positives = 667/892 (74%), Gaps = 9/892 (1%) Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63 S +SF R L VGG Y YYSL EA GL ISRLP S++VLLENLLR EDG +VT+E Sbjct: 3 STDSFKARKTLEVGGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEE 62 Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 I A +W K + E+ +R +RV+MQDFTGVPAVVDLAAMRDAI LGGDP INPL Sbjct: 63 DIEALAEW-LPKAKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPL 121 Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183 VPVDLVIDHS+ VDY G DA +N +LE++RNEERY+FLKWGQK+F NFRVVPPGTGIC Sbjct: 122 VPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGIC 181 Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 HQ+NLEYL VWT+ E+GE +AYPDT VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG Sbjct: 182 HQVNLEYLAPVVWTR-EDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303 P SML+PEVVG ++TG L EGVTATDLVLT+T+MLRK+GVV KFVEFFG G S+ LADR Sbjct: 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADR 300 Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVA 363 ATIANMAPEYGATCGFFP+D T+DYLRL+GR +V LVEAY K QG+WR+ + E+ Sbjct: 301 ATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPL--EEPV 358 Query: 364 FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423 +T ++LDL V PS+AGP+RP+ R+ LS+V +F + + + +G D+ Sbjct: 359 YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDEAE---EGEDY 415 Query: 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYL 483 L G V IA+ITSCTNT NPSVMI AGLLA+ AV GLK KPWVKTS APGS+V +YL Sbjct: 416 ELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYL 475 Query: 484 VQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543 +AGL+ YLEALGF+LVG+GCTTCIGNSG L EI + I+ LVV VLSGNRNFEGRI Sbjct: 476 EKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRI 535 Query: 544 SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNK 603 P V+ANYL SPPLVVAYALAG V +L KDP+G D+ G+PVYL+DIWP D EI + V K Sbjct: 536 HPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAK 595 Query: 604 YVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDI 663 V ++++K+Y+DVF+GD W IEVPE Y WD STY+RNPPYFE + + DI Sbjct: 596 AVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDI 655 Query: 664 CGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRG 723 GAR+L LLGD ITTDHISPAG+I S A YL + GV+ KDFN +G+RRGNHEVMMRG Sbjct: 656 KGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRG 715 Query: 724 TFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSS 783 TF+NIRI N M+ G +GGYT H+P E + IYDAAM+YK + PLVV AG EYG GSS Sbjct: 716 TFANIRIRNEMVP--GVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSS 773 Query: 784 RDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK 843 RDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S K L + G E +I Sbjct: 774 RDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEG 833 Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 L+ + P T+ I +DG P++C IDT E+++ +NGGILQ VLR L Sbjct: 834 LEDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDL 885 |
Length = 888 |
>gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional | Back alignment and domain information |
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Score = 1375 bits (3560), Expect = 0.0 Identities = 521/896 (58%), Positives = 645/896 (71%), Gaps = 14/896 (1%) Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63 + N VGG Y +YSLP ++RLP S++VLLENLLR EDG VT+E Sbjct: 2 AHNLHKTLKEFDVGGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEE 61 Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 + A WL + E+ + +RV+MQDFTGVPA+VDLAAMRDA GGDP INPL Sbjct: 62 HLEALANWLPE-RKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPL 120 Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183 VPVDLV+DHS+ VDY G KDA+ N +E+QRN ERY+FLKWG ++F NFRVVPPGTGI Sbjct: 121 VPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIM 180 Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 HQ+NLEYL + V TK ++G+ +AYPDT VGTDSHTTMIN +G+LGWGVGGIEAEA MLG Sbjct: 181 HQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240 Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303 P+ ML+P+VVG E+TG L+EGVTATDLVLT+T+MLRKEGVV KFVEFFG G S+ L DR Sbjct: 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDR 300 Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWR---EDIDYE 360 ATIANMAPEYGAT GFFPVD T+DYLRL+GR+ +++ LVEAY K QG+W + Y Sbjct: 301 ATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYT 360 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + ++LDL V+PS+AGP+RP+ R++L V S+F ++ ++ K Sbjct: 361 RT-----LELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF--AKKAQTS 413 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 L G VAIA+ITSCTNT NPSV+I AGLLA+ AV GL KPWVKTS APGS+V Sbjct: 414 NGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVT 473 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL +AGL+ YLE LGF +VG+GCTTCIGNSG L EI + I + LV A VLSGNRNFE Sbjct: 474 EYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFE 533 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRI P+++AN+L SPPLVVAYALAG VR++L+ +P+G+ + G PVYL+DIWP +EI + Sbjct: 534 GRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDAL 593 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 V V + ++K Y++VFKG W IE P+ Y WD KSTY+R PP+F+ I Sbjct: 594 VAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGPAASI 653 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 + GAR L +LGD ITTDHISPAG+I S A YL++ GV + DFN +G+RRGNHEVM Sbjct: 654 ATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVM 713 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+N+RI N M+ GK+GG T+H PS E L IYDAAMRY+ PLVV AG EYG Sbjct: 714 MRGTFANVRIKNLMIP--GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGT 771 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S ++L + G E + Sbjct: 772 GSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFD 831 Query: 841 IRKLKT-ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 I L I PRQ+ TL IH +DG+ + VP++C IDT E+++ K GGIL VLRQL Sbjct: 832 IEGLPGEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQL 887 |
Length = 889 |
>gnl|CDD|162307 TIGR01341, aconitase_1, aconitate hydratase 1 | Back alignment and domain information |
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Score = 1245 bits (3223), Expect = 0.0 Identities = 518/879 (58%), Positives = 655/879 (74%), Gaps = 10/879 (1%) Query: 21 YVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVES 80 Y YYSL E +G + IS+LP S+++LLE++LR DG ++T+E I +KW + ++ Sbjct: 3 YYYYSLKALEESGGK-ISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGE-VADT 60 Query: 81 EVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG 140 E++++ +RV+MQDFTGVPAVVDLAAMR+A+ LGGDP+ INPLVPVDLVIDHS+ VDY G Sbjct: 61 EIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYG 120 Query: 141 NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNE 200 + A+ N +LE++RN ERY+FLKW QK+F+NFRVVPPGTGI HQ+NLEYL V+ Sbjct: 121 TEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEV 180 Query: 201 NGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 +GE AYPD+ VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG P M +PEV+G ++TG Sbjct: 181 DGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGK 240 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 LQEGVTATDLVLT+TQMLRK+GVV KFVEFFG G + LADRATIANMAPEYGATCGFF Sbjct: 241 LQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFF 300 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P+D T+ YLRL+GR V+LVE Y + QG++ + D E+ +T ++LDL +V PSVA Sbjct: 301 PIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYD--DSEEPRYTDVVELDLSDVEPSVA 358 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVK----GCDFHLKHGDVAIASIT 436 GP+RP+ R+ L EV + F E+ + K P+K G + L+ G V IA+IT Sbjct: 359 GPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAIT 418 Query: 437 SCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALG 496 SCTNT NPSVM+GAGLLA+ AV GLK P+VKTS APGS+V +YL ++GL+ YLE LG Sbjct: 419 SCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELG 478 Query: 497 FSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPP 556 F+LVG+GCTTCIGNSG L K + E I + L V VLSGNRNFEGRI P V+ NYL SPP Sbjct: 479 FNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPP 538 Query: 557 LVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSD 616 LVVAYALAGN+ NL +PIG D+ G PVYLRDIWP + EI ++VN V +++KK+Y + Sbjct: 539 LVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYEN 598 Query: 617 VFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI 676 +F+G+ W +I+ P +TY WDEKSTY+R PP+FE + + E+ DI GARIL LLGD I Sbjct: 599 IFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDSI 658 Query: 677 TTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLG 736 TTDHISPAGSI S A YL++RGV +DFN +G+RRGNHEVMMRGTF+NIRI N M+ Sbjct: 659 TTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV- 717 Query: 737 EEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 +GK+GGYT+H+P + +YDAAM+YK + PLVV AG EYG+GSSRDWAAKGT+LLGV Sbjct: 718 -KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGV 776 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 ++VIAESFERIHRSNL+GMGVIP F +G + L + GDE I+I +K + P +E T+ Sbjct: 777 KAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVT 836 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 S G + IDT E+++ K+GGILQ VLR+ Sbjct: 837 FTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKF 875 |
This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes. Length = 876 |
>gnl|CDD|185440 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional | Back alignment and domain information |
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Score = 1211 bits (3134), Expect = 0.0 Identities = 486/909 (53%), Positives = 626/909 (68%), Gaps = 36/909 (3%) Query: 1 MSRSLNSFN-CRSILSVGGIDYVYYSLPKAEANGLQG--ISRLPCSMKVLLENLLRFEDG 57 S N F L GG Y YYSL + L + +LP S++VLLE+ +R D Sbjct: 9 SSSRPNPFEKVLKTLKDGG-SYKYYSLNE-----LHDPRLKKLPYSIRVLLESAVRNCDE 62 Query: 58 CTVTKEQIHAFVKWLDN--KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGG 115 VT + + + W +N K E+ ++ +RVL+QDFTGVPAVVDLAAMRDA+ LGG Sbjct: 63 FDVTSKDVENILNWEENSKKQI---EIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGG 119 Query: 116 DPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV 175 DP INPLVPVDLVIDHS+ VD+S + DA+ N+++E++RN ER+ FLKWG K+FKN + Sbjct: 120 DPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLI 179 Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235 VPPG+GI HQ+NLEYL + V+ K+ + YPD+ VGTDSHTTMIN LG+LGWGVGGIE Sbjct: 180 VPPGSGIVHQVNLEYLARVVFNKD----GLLYPDSVVGTDSHTTMINGLGVLGWGVGGIE 235 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 AEA MLG PISM+LPEVVGF++TG L E VTATDLVLT+T MLRK GVV KFVEF+G G Sbjct: 236 AEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGV 295 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 +++ LADRATIANMAPEYGAT GFFP+D T+DYL+ +GRS +V+L+E Y K G++R Sbjct: 296 KTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT 355 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN--------EYYK 407 E++ ++ ++LDL V PSVAGP+RP R+ LS++ F ++ + Sbjct: 356 Y--AEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPE 413 Query: 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467 + H K+ KG ++ L HG V IA+ITSCTNT NPSVM+ AGLLA+ AV GLK P+ Sbjct: 414 EKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPY 473 Query: 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSL 527 +KTS +PGS+V +YL +GL++YLE LGF G+GC TCIGNSG L E+SE I L Sbjct: 474 IKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDL 533 Query: 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 V A VLSGNRNFEGR+ P ANYL SPPLVVAYALAG V + +P+G D+ G PV+L Sbjct: 534 VAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFL 593 Query: 588 RDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 RDIWP EIQ+ KYV +++K+ YS++ +G+ W ++VP+ + Y WDEKSTY+ NP Sbjct: 594 RDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNP 653 Query: 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDF 707 P+F+T+ P I I A L LGD ITTDHISPAG+I S AA YL +RGV+ KDF Sbjct: 654 PFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDF 713 Query: 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQ 767 N +G RRGN EVM+RGTF+NIR+ N + GK G T+H P+ E++ IYDAA +YK + Sbjct: 714 NTYGARRGNDEVMVRGTFANIRLINKLC---GKVGPNTVHVPTGEKMSIYDAAEKYKQEG 770 Query: 768 VPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGIS 827 VPL+V AG EYG+GSSRDWAAKG L GV++VIAESFERIHRSNL+GMG++P F G + Sbjct: 771 VPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGEN 830 Query: 828 WKNLNIKGDEIINIR-KLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGG 886 +L + G E +I + P Q+ + + G K I IDT E+ + K+GG Sbjct: 831 ADSLGLTGKEQFSIDLNSGELKPGQD--VTVKTDTG--KTFDTILRIDTEVEVEYFKHGG 886 Query: 887 ILQAVLRQL 895 ILQ VLR+L Sbjct: 887 ILQYVLRKL 895 |
Length = 898 |
>gnl|CDD|177699 PLN00070, PLN00070, aconitate hydratase | Back alignment and domain information |
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Score = 1038 bits (2685), Expect = 0.0 Identities = 459/890 (51%), Positives = 601/890 (67%), Gaps = 34/890 (3%) Query: 23 YYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 YYSLP A I +LP S+++LLE+ +R D VTKE + + W +N + E+ Sbjct: 63 YYSLP---ALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDW-ENTSPKQVEI 118 Query: 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNK 142 ++ +RVL+QDFTGVPAVVDLA MRDA+ LGGDP INPLVPVDLVIDHS+ VD + ++ Sbjct: 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSE 178 Query: 143 DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202 +AV N +LE+QRN+ER+ FLKWG +F+N VVPPG+GI HQ+NLEYLG+ V+ N Sbjct: 179 NAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVF----NT 234 Query: 203 ENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQ 262 + I YPD+ VGTDSHTTMI+ LG+ GWGVGGIEAEAAMLG P+SM+LP VVGF+++G L+ Sbjct: 235 DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 294 Query: 263 EGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 +GVTATDLVLT+TQMLRK GVV KFVEF+G G + LADRATIANM+PEYGAT GFFPV Sbjct: 295 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 354 Query: 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKV----AFTKKMKLDLGNVSPS 378 D T+ YL+L+GRS+ V ++EAY + M+ +DY + ++ ++LDL +V P Sbjct: 355 DHVTLQYLKLTGRSDETVAMIEAYLRANKMF---VDYNEPQQERVYSSYLELDLEDVEPC 411 Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFHLKHGDV 430 ++GP+RP R+ L E+ + + + ++ K++ + K+ G L+HG V Sbjct: 412 ISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSV 471 Query: 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE 490 IA+ITSCTNT NPSVM+GAGL+A+ A GL+ KPW+KTS APGS V +YL+++GL + Sbjct: 472 VIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQK 531 Query: 491 YLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEAN 550 YL GF +VG+GCTTCIGNSG L + ++ I + +V A VLSGNRNFEGR+ P AN Sbjct: 532 YLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRAN 591 Query: 551 YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLY 610 YL SPPLVVAYALAG V + K+PIG + G V+ RDIWP + E+ V V D++ Sbjct: 592 YLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMF 651 Query: 611 KKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILC 670 K Y + KG+ W + VP Y WD KSTY+ PPYF+ ++ P + A L Sbjct: 652 KSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLL 711 Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730 GD ITTDHISPAGSI S AA YL +RGV KDFN +G+RRGN E+M RGTF+NIRI Sbjct: 712 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRI 771 Query: 731 CNYML-GEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 N +L GE G K T+H P+ E+L ++DAAM+YK + ++ AG EYG+GSSRDWAAK Sbjct: 772 VNKLLKGEVGPK---TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAK 828 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR---KLKT 846 G LLGV++VIA+SFERIHRSNL+GMG+IP F G L + G E I + Sbjct: 829 GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISE 888 Query: 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I P Q+ T+ + +F C DT E+ + +GGIL V+R L Sbjct: 889 IKPGQDVTVTTD-NGKSFTCT---LRFDTEVELAYFDHGGILPYVIRNLI 934 |
Length = 936 |
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent | Back alignment and domain information |
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Score = 778 bits (2009), Expect = 0.0 Identities = 379/880 (43%), Positives = 533/880 (60%), Gaps = 47/880 (5%) Query: 18 GIDYVYYSLPKA-EANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG 76 G D Y+ A EA +LP + ++L ENL+R E + A + + Sbjct: 10 GTDLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVR-----RCDPETLSASLLQI---- 60 Query: 77 TVESEVSYRF----SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132 +E + F +RV+ D G A+VDLA +RDAI GGDP +NP+VP L++DH Sbjct: 61 -IERKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDH 119 Query: 133 SLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYL 191 SL V+Y G + DA +N+ +E +RNE+R+ F+ W + +FKN V+P G GI HQINLE + Sbjct: 120 SLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKM 179 Query: 192 GQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPE 251 + KN +A+PDTCVGTDSHT ++ALG++ GVGG+EAE MLG M LP+ Sbjct: 180 SPVIQVKN----GVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPD 235 Query: 252 VVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAP 311 +VG E+TG Q G+TATD+VL +T+ LRKE VVS ++EFFG G ++ + DRATI+NM P Sbjct: 236 IVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTP 295 Query: 312 EYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371 EYGAT F +D TIDYL+L+GR +V LVE Y K G+W + + + + + ++ D Sbjct: 296 EYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSL--KHAVYERVLEFD 353 Query: 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVA 431 L +V ++AGP P +R+ S++ + + ++ L + G V Sbjct: 354 LSSVVRNMAGPSNPHARVPTSDLAARGIA--GPAEEQPEGL------------MPDGAVI 399 Query: 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEY 491 IA+ITSCTNT NP ++ AGLLARNA + GLK KPWVKTS APGS+V+ YL +AGL+ Sbjct: 400 IAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPE 459 Query: 492 LEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANY 551 LE LGF +V F CTTC G SGAL I + I + L VLSGNRNF+GRI P + + Sbjct: 460 LEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAF 519 Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611 L SPPLVVAYA+AG +R ++ KD +G D G P+ L+DIWP D EI + V V + ++ Sbjct: 520 LASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFR 579 Query: 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671 K Y +F D + + S Y W STY+R PPY+E + + G R L + Sbjct: 580 KVYIPMFDLDDT----QSAVSPLYDWRPMSTYIRRPPYWEGA---LAGERTLKGMRPLAI 632 Query: 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRIC 731 LGD ITTDH+SP+ +I SAA YL + G+ E+DFN + T RG+H R TF+N ++ Sbjct: 633 LGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLF 692 Query: 732 NYMLGEEG--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 N M+ +G K+G P + +++A Y + PL++ AG +YG GSSRDWAAK Sbjct: 693 NEMVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAK 752 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849 G RL GV +++AE FERIHR+NL+GMGV+P F G + L + G E ++ + I+P Sbjct: 753 GVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDV--VGEITP 810 Query: 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889 R + TL + +G VP+ C +DT +E++ + GG+LQ Sbjct: 811 RADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQ 850 |
Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114). Length = 858 |
>gnl|CDD|31249 COG1048, AcnA, Aconitase A [Energy production and conversion] | Back alignment and domain information |
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Score = 1179 bits (3052), Expect = 0.0 Identities = 531/891 (59%), Positives = 634/891 (71%), Gaps = 31/891 (3%) Query: 6 NSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQI 65 +SF R L+VGG Y YY LPK E +G IS+LP S+K+LLENLLR EDG T+E I Sbjct: 1 DSFKARKTLTVGGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHI 55 Query: 66 HAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVP 125 A +WL G E E+++R +RV+MQDFTGVPAVVDLAAMRDA+V LGGDP INP+VP Sbjct: 56 EALARWL-PSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVP 114 Query: 126 VDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQ 185 VDLVIDHS+ VD G+ DA +N +LE++RN ERY+FLKW K+F NFRVVPPGTGI HQ Sbjct: 115 VDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 Query: 186 INLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 +NLEYL + VW K +AYPDT VGTDSHTTMI LG+LGWGVGGIEAEAAMLG P Sbjct: 175 VNLEYLAKVVWAK----PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPW 230 Query: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRAT 305 ML+PEVVG ++TG L EGVTATDLVLT+T MLRK+GVV KFVEFFG G S+ LADRAT Sbjct: 231 YMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRAT 290 Query: 306 IANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFT 365 IANM PEYGAT GFFP+D T+DYLRL+GRS +V LVEAY K QG+W + D + + Sbjct: 291 IANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAE-YD 349 Query: 366 KKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHL 425 K ++LDL V PS+AGP+RP+ R+ LSEV +F + E K L Sbjct: 350 KVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLL-------GKEL 402 Query: 426 KHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 G V IA+ITSCTNT NP V+I AGLLA+ AV GLK KPWVKTS APGS+V EYL + Sbjct: 403 GDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462 Query: 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISP 545 AGL+ YLE LGF++VG+GCTTCIGNSG L +EI + I+ LVV VLSGNRNFEGRI P Sbjct: 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGP 522 Query: 546 DVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYV 605 V+ANYL SPPLVVAYALAG + +L DP+G D G PVYL+DIWP EI V K V Sbjct: 523 LVKANYLASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAV 582 Query: 606 TCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICG 665 ++++K+Y+DVFK W IEVPE Y W STY+R PP+F+ + E I G Sbjct: 583 KPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGA---EPKPIKG 635 Query: 666 ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTF 725 AR+L LGD ITTDHISPAGSI S A YL + GV+ DFN +G+RRGNHEVMMRGTF Sbjct: 636 ARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTF 695 Query: 726 SNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRD 785 +NIRI N M+ E GGYTIH PS E IYDAAM+YK + +PLVV AG YG GSSRD Sbjct: 696 ANIRIRNEMVPGE---GGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRD 749 Query: 786 WAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLK 845 WAAKG RLLGV++VIAESFERIHRSNLIGMGV+P F G ++ L + G+E I+I L+ Sbjct: 750 WAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE 809 Query: 846 TISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 + P T+ + DG + P++C IDT +EI + K GGIL V R L Sbjct: 810 NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLL 860 |
Length = 861 |
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain | Back alignment and domain information |
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Score = 731 bits (1888), Expect = 0.0 Identities = 290/480 (60%), Positives = 336/480 (70%), Gaps = 76/480 (15%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV++QDFTGVPAVVDLAAMRDA+ LGGDP+ INPL+PVDLVIDHS+ VD+ G DA+ + Sbjct: 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAK 60 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 N LE++RN ERY FLKWGQK+FKN RVVPPGTGI HQ+NLEYL + V+T E+G+ +AY Sbjct: 61 NMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAY 120 Query: 208 PDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTA 267 PD+ VGTDSHTTMIN LG+LGWGVGGIEAEA MLG PISMLLPEVVG ++TG L+ GVTA Sbjct: 121 PDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTA 180 Query: 268 TDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 TDLVLT+TQMLRK GVV KFVEFFG G + +ADRATIANMAPEYGATCGFFPVD Sbjct: 181 TDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 Query: 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPES 387 T+ ++LDL V PSV+GP+RP+ Sbjct: 237 -------------------------------------TQVVELDLSTVEPSVSGPKRPQD 259 Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447 R+ L HG V IA+ITSCTNT NPSVM Sbjct: 260 RVPL-----------------------------------HGSVVIAAITSCTNTSNPSVM 284 Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 + AGLLA+ AV GLK KP+VKTS APGS+V +YL +GL+ YLE LGF +VG+GCTTC Sbjct: 285 LAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTC 344 Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 IGNSG L +E+ E I + LVVA VLSGNRNFEGRI P V ANYL SPPLVVAYALAG V Sbjct: 345 IGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 |
Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. Length = 404 |
>gnl|CDD|144063 pfam00330, Aconitase, Aconitase family (aconitate hydratase) | Back alignment and domain information |
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Score = 477 bits (1230), Expect = e-135 Identities = 162/507 (31%), Positives = 227/507 (44%), Gaps = 43/507 (8%) Query: 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQ 118 T+ ++ + A V N+ + R RVLMQD T A + L A + + G Sbjct: 1 TLYEKILDAHVDDPANERGT-PYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRRVPG--- 56 Query: 119 NINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178 + DH++ G KD + + RN+E+Y FL+ K+F P Sbjct: 57 -------TTITCDHNIPTQDGGEKD-LNIAIE----RNKEQYDFLEKNVKAFGVGFWGPG 104 Query: 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEA 238 TGI HQI LE T VGTDSHT LG L +GVGG EAE Sbjct: 105 STGIVHQIGLENGFTLPGL------------TLVGTDSHTPTHGGLGALAFGVGGSEAEH 152 Query: 239 AMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESM 298 + G P P+V+G ++TG L G+TA D++L + L +G K VEFFG G + + Sbjct: 153 VLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDL 212 Query: 299 VLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID 358 + R TI NMA E GAT G FP D T YL+ +GR+ + EA K + + + Sbjct: 213 SMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLKSDKDA 272 Query: 359 YEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418 + K +++DL ++ P V GP P+ + +SEVP + KS Y Sbjct: 273 ----QYDKVIEIDLSDIEPHVTGPTTPQDAVPISEVPPDPN-NFLDPVVKSMEKALAYMG 327 Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 LK V A I SCTN+ + A ++ AG KPWVK + PGS+ Sbjct: 328 LWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKG---AAGKGLKPWVKATVVPGSEQ 384 Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538 + GL + + GF GC+ CIG + I V S NRN Sbjct: 385 VKATAERDGLDKIFDEAGFEWRANGCSPCIGMND-RPDIIKGE------KNTCVSSSNRN 437 Query: 539 FEGRISPDVEANYLLSPPLVVAYALAG 565 FEGR + ++L SP +V A A+AG Sbjct: 438 FEGRQGANGRTHWLASPAMVAAAAIAG 464 |
Length = 464 |
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
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Score = 277 bits (710), Expect = 9e-75 Identities = 145/481 (30%), Positives = 206/481 (42%), Gaps = 93/481 (19%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV++QD TG A+ + V + V DH++ Sbjct: 1 RVMLQDATGPMAMKAFEILAALGKVA--------DPSQIACVHDHAV------------- 39 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 LE N E ++FL + PG GI HQI +E L A Sbjct: 40 --QLEKPVNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIMVENL--------------AL 82 Query: 208 P-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266 P D VG+DSHTT LG + G GG + M G P + PEVVG +TG L GVT Sbjct: 83 PGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVT 142 Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 D+VL + ++ +GV+++ VEF+G G S+ + DR TI NM E GAT G FP D+ T Sbjct: 143 GKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202 Query: 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386 + +L +GR + + + + E +Y++V +++DL + P ++GP RP+ Sbjct: 203 LKWLEATGRPLLK--NLWLAFPEELLADEGAEYDQV-----IEIDLSELEPDISGPNRPD 255 Query: 387 SRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSV 446 +S+SEV + I SCTN S Sbjct: 256 DAVSVSEVEG-------------------------------TKIDQVLIGSCTNN-RYSD 283 Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506 M+ A L + A K P V+ PGS++ Y L + G E L G ++ GC Sbjct: 284 MLAAAKLLKGA-----KVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGP 338 Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 C+GN L + GV SGNRNF GR+ YL SP L A A+AG Sbjct: 339 CMGNGARLVAD----------GEVGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 Query: 567 V 567 + Sbjct: 389 I 389 |
Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. Length = 389 |
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
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Score = 171 bits (436), Expect = 6e-43 Identities = 139/483 (28%), Positives = 201/483 (41%), Gaps = 111/483 (22%) Query: 90 LMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLI-VDYSGNKDAV 145 L QD TG A + AM G + V +L +DH+ + D+ Sbjct: 4 LTQDATGTMAYLQFEAM--------GVDR-----VRTELSVSYVDHNTLQTDF------- 43 Query: 146 TRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENI 205 N + +RFL+ + PG GICHQ++LE Sbjct: 44 ---------ENADDHRFLQTVAARY-GIYFSRPGNGICHQVHLE--------------RF 79 Query: 206 AYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEG 264 A P T +G+DSHT LG+L G GG++ AM G P + +P+VVG +TG L Sbjct: 80 AVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPW 139 Query: 265 VTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDR 324 VTA D++L + + L +G V K E+ G G ++ + +RATI NM E GAT FP D Sbjct: 140 VTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDE 199 Query: 325 GTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRR 384 T ++L GR + V+L D +Y++ +++DL + P +A P Sbjct: 200 RTREFLAAQGREDDWVELAA---------DADAEYDEE-----IEIDLSELEPLIARPHS 245 Query: 385 PESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNP 444 P++ + + EV +K VAI SCTN+ Sbjct: 246 PDNVVPVREVAG----------------------------IKVDQVAIG---SCTNSSYE 274 Query: 445 SVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 +M A +L G + P V APGS+ E L + G + L A G ++ C Sbjct: 275 DLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILESAC 328 Query: 505 TTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 CIG A S V + NRNFEGR + YL SP + A AL Sbjct: 329 GPCIGMGQA------PPTGGVS-----VRTFNRNFEGRSGTKDDLVYLASPEVAAAAALT 377 Query: 565 GNV 567 G + Sbjct: 378 GVI 380 |
Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known. Length = 380 |
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
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Score = 170 bits (432), Expect = 2e-42 Identities = 137/488 (28%), Positives = 212/488 (43%), Gaps = 88/488 (18%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV MQD T A++ + G P+ VP + DH LI G + + R Sbjct: 1 RVAMQDATAQMALLQFMS--------SGLPK---VAVPSTIHCDH-LIEAQVGGEKDLKR 48 Query: 148 NKDLEYQRNEERYRFL-----KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202 KD+ N+E Y FL K+G +K PG+GI HQI LE Sbjct: 49 AKDI----NKEVYDFLASAGAKYGIGFWK------PGSGIIHQIVLE------------- 85 Query: 203 ENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261 N A+P +GTDSHT LG + GVGG +A M G P + P+V+G ++TG L Sbjct: 86 -NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKL 144 Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 + D++L + +L +G VE+FG G +S+ TI NM E GAT FP Sbjct: 145 SGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFP 204 Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381 + YL+ +GR+ DL + + + E +Y+++ ++++L + P + G Sbjct: 205 YNERMKKYLKATGRAEI-ADLADEFKDDLLVADEGAEYDQL-----IEINLSELEPHING 258 Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441 P P+ +S+ K +P+ D+ + I SCTN+ Sbjct: 259 PFTPDLATPVSKF-------------KEVAEKNGWPL----------DLRVGLIGSCTNS 295 Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501 + M A +A+ A+ GLK K + PGS+ + + GL++ G ++ Sbjct: 296 -SYEDMGRAASIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLA 352 Query: 502 FGCTTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPL 557 C CIG K E + ++ S NRNF GR + ++ SP + Sbjct: 353 NACGPCIGQWDRKDIKKGEKNTIVT----------SYNRNFTGRNDANPATHAFVASPEI 402 Query: 558 VVAYALAG 565 V A A+AG Sbjct: 403 VTAMAIAG 410 |
Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. Length = 412 |
>gnl|CDD|179006 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed | Back alignment and domain information |
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Score = 154 bits (392), Expect = 9e-38 Identities = 136/493 (27%), Positives = 191/493 (38%), Gaps = 130/493 (26%) Query: 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRN 148 V+ D TG A+ DP I +V DH Sbjct: 31 VMAHDITGPLAI---KEFEKIGGDKVFDPSKIV------IVFDH------------FVPA 69 Query: 149 KDLEYQRNEERYRFL-KWGQK-SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIA 206 KD ++ E+ + L ++ ++ NF V G GICHQ+ E + + Sbjct: 70 KD---IKSAEQQKILREFAKEQGIPNFFDV--GEGICHQVLPE-------------KGLV 111 Query: 207 YP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGV 265 P D VG DSHT ALG G+G + AAM +PE + + G L GV Sbjct: 112 RPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGV 171 Query: 266 TATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 TA D++L I + +G K +EF G E++ + +R T+ANMA E GA G F D Sbjct: 172 TAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEK 231 Query: 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385 T++YL+ R+ ++ ED +YE+V ++DL + P VA P P Sbjct: 232 TLEYLK--ERAGRDYKPWKSD--------EDAEYEEV-----YEIDLSKLEPQVAAPHLP 276 Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445 ++ +SEV E V D I SCTN Sbjct: 277 DNVKPVSEV-------------------EGTKV----------DQVF--IGSCTN----- 300 Query: 446 VMIGAGLLA--RNAVR--AGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501 G L R A G K P V+ P SQ Y ++ GL+E G + Sbjct: 301 -----GRLEDLRIAAEILKGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVST 355 Query: 502 FGCTTCIGNSGALKKEISEVIHQKSLVVAGVL--------SGNRNFEGRI-SPDVEANYL 552 C C+G H GVL + NRNF+GR+ SP+ E YL Sbjct: 356 PTCGPCLG------------GHM------GVLAPGEVCLSTTNRNFKGRMGSPESEV-YL 396 Query: 553 LSPPLVVAYALAG 565 SP + A A+ G Sbjct: 397 ASPAVAAASAVTG 409 |
Length = 418 |
>gnl|CDD|29529 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain | Back alignment and domain information |
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Score = 273 bits (700), Expect = 1e-73 Identities = 105/171 (61%), Positives = 129/171 (75%), Gaps = 2/171 (1%) Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730 LLGD +TTDHISPAGSI S A YL +RGVK +DFN +G+RRGN EVMMRGTF+NIR+ Sbjct: 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60 Query: 731 CNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKG 790 N ++ GG T H P+ E + IYDAAMRYK + VPLV+ AG EYG+GSSRDWAAKG Sbjct: 61 RNKLVPGTE--GGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKG 118 Query: 791 TRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINI 841 LLGV++VIAESFERIHRSNL+GMG++P F G + +L + G+E +I Sbjct: 119 PFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDI 169 |
This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.. Length = 171 |
>gnl|CDD|144335 pfam00694, Aconitase_C, Aconitase C-terminal domain | Back alignment and domain information |
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Score = 159 bits (403), Expect = 5e-39 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 693 AASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 +L RGV DF GT +NI + N + +G + T H P+ E Sbjct: 1 MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILF--DGWRANKTTHLPTGE 58 Query: 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNL 812 DAA RYK P++V G YG GSSR+ AA R LG+++VIA+SF RIHR+NL Sbjct: 59 NPDFVDAAERYKQHGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNL 118 Query: 813 IGMGVIPFAFGKG 825 I G++P F G Sbjct: 119 IKNGLLPLTFPNG 131 |
Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. Length = 131 |
>gnl|CDD|29528 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain | Back alignment and domain information |
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Score = 74.2 bits (182), Expect = 1e-13 Identities = 47/153 (30%), Positives = 61/153 (39%), Gaps = 54/153 (35%) Query: 672 LGDKITTDHISPAGS--IPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIR 729 +GD ITTDHI PAG+ +PL R N + F + Sbjct: 2 VGDNITTDHIMPAGAKVLPL------------------------RSNIPAISEFVFHRV- 36 Query: 730 ICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 + E K G P + G YG GSSR+ AA Sbjct: 37 --DPTFAERAKAAG-------------------------PGFIVGGENYGQGSSREHAAL 69 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAF 822 LGVR+V+A+SF RIHR+NLI G++P F Sbjct: 70 APMYLGVRAVLAKSFARIHRANLINFGILPLTF 102 |
Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.. Length = 121 |
>gnl|CDD|29527 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel domain | Back alignment and domain information |
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Score = 70.8 bits (173), Expect = 2e-12 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 31/175 (17%) Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 K TTDHIS AG +L+ RG + N N E G ++++ N + Sbjct: 5 KCTTDHISAAGP---------WLKYRGHLDNISNNLLIGAINAE---NGKANSVK--NQV 50 Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 GE G + D A YK + VV YG GSSR+ AA R L Sbjct: 51 TGEYGP---------------VPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHL 95 Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849 G R++I +SF RIH +NL G++P F + I D+ ++I L +P Sbjct: 96 GGRAIITKSFARIHETNLKKQGLLPLTFADPADYD--KIHPDDKVDILGLTDFAP 148 |
Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.. Length = 149 |
>gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated | Back alignment and domain information |
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Score = 255 bits (654), Expect = 4e-68 Identities = 222/843 (26%), Positives = 331/843 (39%), Gaps = 248/843 (29%) Query: 80 SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLIV 136 E++ R + L QD TG A + AM G + V +L +DH+L+ Sbjct: 23 EEIAIRIDQTLTQDATGTMAYLQFEAM--------GLDR-----VKTELSVQYVDHNLLQ 69 Query: 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQS 194 + + N + +RFL Q + + PG GICHQ++LE Sbjct: 70 --ADFE-------------NADDHRFL---QSVAAKYGIYFSKPGNGICHQVHLE----- 106 Query: 195 VWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253 A+P T +G+DSHT LG+L G GG++ AM G P + +P+VV Sbjct: 107 ---------RFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVV 157 Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMA 310 G ++TG L V+A D++L +LR+ V V K +E+FG G ++ + +RATI NM Sbjct: 158 GVKLTGKLPPWVSAKDVILE---LLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMG 214 Query: 311 PEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 E GAT FP D T ++L+ GR + + ++ D +Y++V +++ Sbjct: 215 AELGATTSIFPSDERTREFLKAQGRE-------DDWVELLA--DPDAEYDEV-----IEI 260 Query: 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430 DL + P +AGP H+ D PV + V Sbjct: 261 DLSELEPLIAGP---------------------------HSPDNVVPVS----EVAGIKV 289 Query: 431 AIASITSCTNTFNPS---VMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 I SCT N S +M A +L G K P V PGS+ E L + G Sbjct: 290 DQVLIGSCT---NSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDG 340 Query: 488 LVEYLEALGFSLVGFGCTTCIGNSGALK-KEISEVIHQKSLVVAGVLSGNRNFEGRISPD 546 + L A G ++ C CIG A +S + + NRNF GR S Sbjct: 341 ALADLIAAGARILENACGPCIGMGQAPATGNVS------------LRTFNRNFPGR-SGT 387 Query: 547 VEAN-YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV---N 602 +A YL SP A AL G I DP + +PK E + F Sbjct: 388 KDAQVYLASPETAAASALTGV-----ITDPRTLALENGE------YPKLEEPEGFAVDDA 436 Query: 603 KYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP-----PYFETISKHI 657 + D S ++EV VR P P E + Sbjct: 437 GIIAP-----------AEDGS--DVEV--------------VRGPNIKPLPLLEP----L 465 Query: 658 PEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNH 717 P++++ ++L +GD ITTDHI PAG A +L R Sbjct: 466 PDLLE---GKVLLKVGDNITTDHIMPAG--------AKWLPYR----------------- 497 Query: 718 EVMMRGTFSNI-RICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGV 776 SNI I ++ E R K +Q +V G Sbjct: 498 --------SNIPNISEFVF-----------------EGVDNTFPERAK-EQGGGIVVGGE 531 Query: 777 EYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLN---- 832 YG GSSR+ AA R LGV++V+A+SF RIH++NLI G++P F + Sbjct: 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTF------ADPADYDK 585 Query: 833 IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892 I+ +++ I L+ P T+ D + + + +I L GG L + Sbjct: 586 IEEGDVLEIEDLREFLPGGPLTVVNVTKDEEIEVRHTL----SERQIEILLAGGALNLIK 641 Query: 893 RQL 895 ++L Sbjct: 642 KKL 644 |
Length = 646 |
>gnl|CDD|35674 KOG0453, KOG0453, KOG0453, Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion, Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 251 bits (643), Expect = 5e-67 Identities = 215/789 (27%), Positives = 321/789 (40%), Gaps = 131/789 (16%) Query: 80 SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS 139 S + R RV MQD + A++ + G + VP + DH + Sbjct: 83 SYLKLRPDRVAMQDASAQMALLQFMSS--------GLKKV---AVPSTIHCDHLIEAQVG 131 Query: 140 GNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKN 199 G+KD + R DL N+E Y FL+ K + PG+GI HQI LE Sbjct: 132 GDKD-LQRASDL----NKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------- 175 Query: 200 ENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVT 258 N A+P +GTDSHT LG L GVGG +A M P + P+V+G ++T Sbjct: 176 ----NYAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLT 231 Query: 259 GSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCG 318 G L + D++L + +L +G +E+FG G S+ ATI NM E GAT Sbjct: 232 GQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTS 291 Query: 319 FFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPS 378 FP + IDYL+ +GR N + Y+K+ +++DL + P Sbjct: 292 LFPYNERMIDYLQATGR-NEIAREARETLDAILAADKGAHYDKI-----IEIDLSTLEPH 345 Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSC 438 V GP P+ S+ V+++ E +K +P+ + + I SC Sbjct: 346 VNGPFTPDL--------STPVSKLGENSEK-----NGWPI----------KIKVGLIGSC 382 Query: 439 TNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFS 498 TN+ + M A + + A GLK K V PGS+ + + G+ E LE G Sbjct: 383 TNS-SYEDMSRAADIVKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGI 439 Query: 499 LVGFGCTTCIG--NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSP 555 ++ C CIG + +KK I V S NRNF GR + +L SP Sbjct: 440 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPATHAFLTSP 490 Query: 556 PLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615 +V A A+AG++ N P + + P + +L KK + Sbjct: 491 EIVTALAIAGDLSFN----PETDSLTAPDGKAFKLEPPIGD-----------ELPKKGFD 535 Query: 616 DVFKGDSSWWNIEVPESETYM-WDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGD 674 G ++ S + D S ++ F+ D+ +IL + Sbjct: 536 ---PGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFDKWDGK-----DLEDLKILIKVKG 587 Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 K TTDHIS AG +L+ RG E N N E + NY+ Sbjct: 588 KCTTDHISAAG---------PWLKYRGHLENISNNDLIGAINKENG-----EANCVKNYL 633 Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 GE G + D A YK + VV YG GSSR+ AA R L Sbjct: 634 TGEFGT---------------VPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHL 678 Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQEST 854 G R++I +SF RIH +NL G++P F + I+ + ++I+ L +P + T Sbjct: 679 GGRAIITKSFARIHETNLKKQGLLPLTFANPADYD--KIRPADKVSIKGLTRRTPGKPLT 736 Query: 855 LEIHYSDGT 863 + + DG Sbjct: 737 VVVTKKDGK 745 |
Length = 778 |
>gnl|CDD|162306 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial | Back alignment and domain information |
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Score = 225 bits (574), Expect = 5e-59 Identities = 214/807 (26%), Positives = 322/807 (39%), Gaps = 179/807 (22%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV MQD + A++ G PQ VP + DH LIV G + R Sbjct: 58 RVAMQDASAQMALLQFMT--------CGLPQ---VAVPASIHCDH-LIVGQKGGDKDLAR 105 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 N+E + FL+ K + PG+GI HQI LE N A+ Sbjct: 106 AIAT----NKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE--------------NYAF 146 Query: 208 PD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266 P +GTDSHT LG + GVGG +A A+ G P + P+++G ++TG L + Sbjct: 147 PGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTS 206 Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 D++L + +L G VE+FG G ES+ ATI NM E GAT FP + Sbjct: 207 PKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAM 266 Query: 327 IDYLRLSGRSNSRVDL-VEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385 YL+ + R+ D Y+ + E Y+++ +++DL + P + GP P Sbjct: 267 SRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDEL-----IEIDLSKLEPHINGPFTP 321 Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445 + +S+ +K++ +P K ++ I SCTN+ + Sbjct: 322 DLSTPISK------------FKET-VQKNGWPEK----------LSAGLIGSCTNS-SYE 357 Query: 446 VMIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 M + ++A +AGLK K P+ T PGS+ L + G+++ E G ++ C Sbjct: 358 DMSRCASIVKDAEQAGLKPKSPFYVT---PGSEQIRATLERDGILQTFEKFGGIVLANAC 414 Query: 505 TTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVVA 560 CIG +KK I + S NRNF GR + N+L SP +V A Sbjct: 415 GPCIGQWDRKDDVKKGEPNTI---------LTSYNRNFRGRNDGNPATMNFLASPEIVTA 465 Query: 561 YALAGNVRKN----LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS- 615 + AG++ N + P G++ + PK E L +K + Sbjct: 466 MSYAGSLTFNPLTDSLTTPDGKEFKFPA-------PKGDE------------LPEKGFEA 506 Query: 616 --DVFKG--DSSWWNIEV---PESETYM-------WDEKSTYVRNPPYFETISKHIPEIV 661 D F+ S N+EV P S+ W+ K Sbjct: 507 GRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWNGK--------------------- 545 Query: 662 DICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG----VKEKDFNQFGTRRGNH 717 D+ G R+L + K TTDHIS AG +L+ +G + Sbjct: 546 DLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKGHLDNISNNTLIG-AVNAETG 595 Query: 718 EVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVE 777 EV N +G KG I + A +K P VV A Sbjct: 596 EV------------NKAYDLDGSKGT------------IPELARDWKARGQPWVVVAEHN 631 Query: 778 YGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE 837 YG GS+R+ AA R LG R +I +SF RIH +NL GV+P F + + GDE Sbjct: 632 YGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PGDE 690 Query: 838 I--INIRKLKTISPRQESTLEIHYSDG 862 + +N+ ++ E L + +G Sbjct: 691 VATLNLYEMLKNGGGGEVDLRVTKKNG 717 |
This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. Length = 745 |
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type | Back alignment and domain information |
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Score = 226 bits (578), Expect = 1e-59 Identities = 185/720 (25%), Positives = 273/720 (37%), Gaps = 179/720 (24%) Query: 155 RNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVG 213 +N + ++FL F + PG GICH ++ E N A P T +G Sbjct: 70 KNADDHKFLMSAAGKFGAW-FSKPGNGICHNVHKE--------------NFAAPGKTLLG 114 Query: 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273 +DSHT LG+L G GGI+ AAM G + +PE+VG + G L E TA D++L Sbjct: 115 SDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILE 174 Query: 274 ITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLS 333 + + L +G + K E+FG G E + + +RATI NM E GAT FP D T +L Sbjct: 175 LLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAF 234 Query: 334 GRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE 393 R + VDL D D E + ++++DL ++ P +A P P++ + + E Sbjct: 235 DREDDFVDL-----------LADADAE---YADEIEIDLSDLEPLIAEPHMPDNVVPVRE 280 Query: 394 VPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 + V ++ I SCTN ++ A LL Sbjct: 281 IAGIEVDQV-------------------------------MIGSCTNGAFEDLLPAAKLL 309 Query: 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513 G + + + APGS+ + E + Q G + A G + + C CIG Sbjct: 310 ------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIG---- 359 Query: 514 LKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 + + + S NRNFEGR + YL SP A A+AG I Sbjct: 360 -------IGFAPASDGVSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGE-----II 407 Query: 574 DPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 DP + +D +GD E+ E Sbjct: 408 DP------------------------------------RDLADD-EGDLEAIGFEMGEKF 430 Query: 634 TYMWDEKSTYVRNP-----------PYFETISKHIPEIVDICGARILCLLGDKITTDHIS 682 +D + P + + + P DI G ++ D ITTDHI Sbjct: 431 PGGYDAADIDIIPKEEREDDDIIKGPNIKPLPEFDPLGADIEG-ETALIMEDNITTDHII 489 Query: 683 PAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG 742 PAG+ L+ R SNI + E Sbjct: 490 PAGADILK------FR---------------------------SNI----EAISE----- 507 Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802 +T+H E + A ++ AG YG GSSR+ AA LGV +VIA+ Sbjct: 508 -FTLHRIDDE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAK 563 Query: 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDG 862 SF RIH +NL G++P F + + GD+I L E I+ +D Sbjct: 564 SFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDDIEIPDDLAAALADGEDEFTINKNDD 622 |
This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized. Length = 658 |
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate | Back alignment and domain information |
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Score = 172 bits (438), Expect = 5e-43 Identities = 118/443 (26%), Positives = 167/443 (37%), Gaps = 99/443 (22%) Query: 128 LVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQIN 187 V DH++ + A + K L E F G GICH I Sbjct: 32 AVFDHNVPTP---DIKAAEQVKTLRKFAKEFGINFFDVG------------RQGICHVI- 75 Query: 188 LEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 L + T P T VG DSHT A G G+G + + + Sbjct: 76 ---LPEKGLTL---------PGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLW 123 Query: 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATI 306 +PE + V G L GVTA D++L I + +G K +EF G ES+ + +R T+ Sbjct: 124 FRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTL 183 Query: 307 ANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID--YEKVAF 364 NMA E GA G D T +YL+ G++ + + D D Y+KV Sbjct: 184 CNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKE------------LKSDEDAEYDKV-- 229 Query: 365 TKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 +++D + P VA P P++ + +SEV E + Sbjct: 230 ---VEIDASELEPQVAWPHSPDNVVPVSEV-------------------EGIKI------ 261 Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484 D I SCTN + A +L G K V+ P SQ Y+ Sbjct: 262 ----DQVF--IGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAE 309 Query: 485 QAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543 + GL+E G + GC C+G + G L E V + NRNF+GR+ Sbjct: 310 KEGLIEIFIEAGAEVRPPGCGACLGGHMGVLAPG--ERC---------VSTSNRNFKGRM 358 Query: 544 -SPDVEANYLLSPPLVVAYALAG 565 SP YL SP A A+ G Sbjct: 359 GSPGAR-IYLASPATAAASAITG 380 |
Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382 |
>gnl|CDD|30414 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 166 bits (422), Expect = 2e-41 Identities = 108/416 (25%), Positives = 158/416 (37%), Gaps = 77/416 (18%) Query: 154 QRNEERYRFLKWGQKSFKNFRVVPPGT-GICHQINLEYLGQSVWTKNENGENIAYP-DTC 211 + E+ + L+ K F G GI HQ+ E + + P T Sbjct: 72 IKAAEQQKELRENAKEFGIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTI 118 Query: 212 VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLV 271 VG DSHT A G +G+G + + + +P+ + EV G L GVTA D++ Sbjct: 119 VGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDII 178 Query: 272 LTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331 L + + +G +EF G S+ + R T+ NMA E GA G D T +YL+ Sbjct: 179 LALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK 238 Query: 332 LSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSL 391 + W+ E + K ++LD ++ P VA P P++ + + Sbjct: 239 -------------EWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPV 285 Query: 392 SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAG 451 SEV E P+K + I SCTN + A Sbjct: 286 SEV-------------------EPDPIK----------IDQVFIGSCTNGRIEDLRAAA- 315 Query: 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-N 510 + G K P V+ PGS+ E + GL + GF GC C+G + Sbjct: 316 -----EILKGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMH 370 Query: 511 SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565 G L E + NRNFEGR SP YL SP + A A+ G Sbjct: 371 PGVLGP--GERC---------ASTSNRNFEGRQGSPGART-YLASPAMAAAAAVEG 414 |
Length = 423 |
>gnl|CDD|162691 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
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Score = 149 bits (378), Expect = 3e-36 Identities = 111/395 (28%), Positives = 160/395 (40%), Gaps = 80/395 (20%) Query: 174 RVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVG 232 V G GICHQ+ +E E A P VG DSHT A+G G+G Sbjct: 88 PVFDVGEGICHQVLVE-------------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMG 134 Query: 233 GIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 + A+ + +PE + V G +EGVTA D+ L I L +G +EFFG Sbjct: 135 ATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFG 194 Query: 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352 E+M + +R T+ NMA E GA G D T +YL+ R+ Sbjct: 195 LPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRP--------- 245 Query: 353 WREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTL 412 Y+ +++DL ++ P VA P ++ +S+V TE+++ + Sbjct: 246 -DPGAKYDDE-----IEIDLSDLEPLVAVPHSVDNVRPVSDVEG---TEIDQVF------ 290 Query: 413 DEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSC 472 I SCTN + I A +L G + P V+ Sbjct: 291 ----------------------IGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIV 322 Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAG 531 P S+ YE ++ G++ L G + GC C+G + G L EV Sbjct: 323 VPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLGD--GEVC--------- 371 Query: 532 VLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565 V + NRNF GR+ SPD E YL SP A A+ G Sbjct: 372 VSTTNRNFRGRMGSPDAEI-YLASPATAAASAVEG 405 |
This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities. Length = 412 |
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein | Back alignment and domain information |
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Score = 134 bits (338), Expect = 1e-31 Identities = 108/405 (26%), Positives = 158/405 (39%), Gaps = 102/405 (25%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIE 235 G GICHQ+ E E + P D VG DSHT ALG G+G + Sbjct: 92 DVGEGICHQVLPE-------------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTD 138 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 A+ +PE + +TG L GVTA D++L + + +G +EF G Sbjct: 139 IAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETI 198 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 ++M + +R T+ANMA E G G D T YL+ + E + + E Sbjct: 199 KNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYK--------EPFRVYKS--DE 248 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415 D +Y K +++D + P VA P ++ +SEV E+++ + Sbjct: 249 DAEYAKE-----VEIDASQLEPVVAAPHNVDNVHPVSEVEG---IEVDQVF--------- 291 Query: 416 YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA--RNAVR--AGLKSKPWVKTS 471 I SCTN G + R A + G K P V+ Sbjct: 292 -------------------IGSCTN----------GRIEDLRVAAKILKGRKVAPDVRLI 322 Query: 472 CAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG 531 P S+ Y ++ GL+E G + GC C+G HQ G Sbjct: 323 VIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLG------------RHQ------G 364 Query: 532 VL--------SGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 VL + NRNF+GR+ P+ E YL SP A A+ G + Sbjct: 365 VLAPGEVCISTSNRNFKGRMGDPNAEI-YLASPATAAASAVKGRI 408 |
This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis. Length = 412 |
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
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Score = 133 bits (336), Expect = 2e-31 Identities = 110/365 (30%), Positives = 155/365 (42%), Gaps = 63/365 (17%) Query: 203 ENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261 E I P D +G DSHT ALG GVG + M +PE + F + G L Sbjct: 108 EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKL 167 Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 + VT DL+L I ++ +G + K +EF G G + + + DR TIANMA E GA G FP Sbjct: 168 KPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFP 227 Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381 VD TI+Y + GR + +A ED Y +V +++DL + P VA Sbjct: 228 VDEITIEYEK--GRGKREEKIYKA--------DEDAKYVRV-----IEIDLSELEPQVAF 272 Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441 P PE+ +SE K +K + I SCTN Sbjct: 273 PHLPENTKDISEA-------------------GKEEIK----------IDQVVIGSCTNG 303 Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE-YLEALGFSLV 500 + + A +L G P V+ PGSQ Y ++ GL+E ++EA G + Sbjct: 304 RLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEA-GAVVS 356 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVA 560 C C+G + E E + + NRNF GR+ YL SP + A Sbjct: 357 TPTCGPCLGGHMGILAE-GER---------AISTTNRNFVGRMGHPKSEVYLASPAVAAA 406 Query: 561 YALAG 565 A+ G Sbjct: 407 SAIKG 411 |
This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway. Length = 419 |
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional | Back alignment and domain information |
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Score = 119 bits (300), Expect = 4e-27 Identities = 118/433 (27%), Positives = 163/433 (37%), Gaps = 88/433 (20%) Query: 171 KNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGW 229 + F V P GI H + E LG + P V DSHTT ALG L + Sbjct: 98 RLFDVDDPRQGIVHVVAPE-LG------------LTLPGMVIVCGDSHTTTYGALGALAF 144 Query: 230 GVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289 G+G E E + + P+ + V G L GVTA DL+L + + +G +E Sbjct: 145 GIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIE 204 Query: 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGR----SNSRVDLVEA 345 F G ++ + R T+ NMA E GA G D T DYLR GR + D A Sbjct: 205 FAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLR--GRPRAPKGALWDAALA 262 Query: 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE-VPSSFVTEMNE 404 Y WR F +++++D +++P V P+ + ++ VP Sbjct: 263 Y------WRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP--------- 307 Query: 405 YYKKSHTLDEKYPVKGCDF-------HLKHG----DVAI--ASITSCTNTFNPSVMIGAG 451 E P + L G + I I SCTN G Sbjct: 308 -----DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTN----------G 352 Query: 452 ----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 L A AV G K P V+ PGS GL A GF GC+ C Sbjct: 353 RIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMC 412 Query: 508 IGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 + + ++ G + NRNFEGR P +L+SP +V A A+A Sbjct: 413 LAMND-------------DVLAPGERCASTTNRNFEGRQGPGART-HLMSPAMVAAAAVA 458 Query: 565 G---NVRKNLIKD 574 G +VR L Sbjct: 459 GHITDVRSLLQAG 471 |
Length = 471 |
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family | Back alignment and domain information |
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Score = 114 bits (286), Expect = 1e-25 Identities = 106/396 (26%), Positives = 155/396 (39%), Gaps = 101/396 (25%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235 P G GI HQI +E E A+P T V +DSH+ M +G LG + + Sbjct: 64 PAGRGIGHQIMIE-------------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTD 110 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 A A +P V E+ G L +GVT D+++ + + K+ V++ +EF GSG Sbjct: 111 AAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGL 170 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 S+ + R TIANM E+GA G FP D Sbjct: 171 NSLSVDTRLTIANMTTEWGALSGLFPTD-------------------------------- 198 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415 K + LDL +SP V+GP K S L E Sbjct: 199 ---------AKHLILDLSTLSPYVSGPNS---------------------VKVSTPLKE- 227 Query: 416 YPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK-PWVKTSC 472 L+ ++ I A + SCTN+ + A ++ + G P V+ Sbjct: 228 ---------LEAQNIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYV 278 Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGV 532 A S + G + L G + + GC CIG L + EV G+ Sbjct: 279 AAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-GEV---------GI 328 Query: 533 LSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 + NRNF+GR+ S + A YL SP +V A A++G + Sbjct: 329 SATNRNFKGRMGSTEALA-YLASPAVVAASAISGKI 363 |
Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. Length = 363 |
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase | Back alignment and domain information |
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Score = 109 bits (274), Expect = 3e-24 Identities = 109/410 (26%), Positives = 165/410 (40%), Gaps = 73/410 (17%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235 P G GI HQI +E E A+P V +DSH+ M LG LG + + Sbjct: 97 PAGRGIGHQIMIE-------------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTD 143 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG- 294 A A +P V E G L GV+ D+++ + + K+ V++ +EF GS Sbjct: 144 AAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSED 203 Query: 295 -FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR----------LSGRSNSRVDLV 343 ++ + R TIANM E+GA G FP+D+ ID+L+ G + Sbjct: 204 SLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAER 263 Query: 344 EAYTKVQGMWREDIDYEKVA-FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 + ++ + +K A + K++ +DL ++S V+GP Sbjct: 264 FTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNS------------------ 305 Query: 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRA 460 K ++ L + L+ D+ I A + SCTN+ + A + A + Sbjct: 306 ---VKVANPLKD----------LEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKN 352 Query: 461 GLKSK---PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKE 517 G K P V+ A S G E L G + GC CIG L E Sbjct: 353 GGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGLL-E 411 Query: 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 EV G+ + NRNF+GR+ YL SP +V A AL G + Sbjct: 412 PGEV---------GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 |
Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain. Length = 712 |
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle | Back alignment and domain information |
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Score = 49.4 bits (118), Expect = 4e-06 Identities = 94/420 (22%), Positives = 152/420 (36%), Gaps = 104/420 (24%) Query: 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSHTTMINALGILGWGVG-GIE 235 PG G+ H W + PDT G DSHT +GI + G G+ Sbjct: 91 PGDGVIHS----------WLNR-----MLLPDTVGTGGDSHTRF--PIGI-SFPAGSGLV 132 Query: 236 AEAAMLG-CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVS-----KFVE 289 A AA G P+ M PE V G +Q G+T DLV I ++G+++ K Sbjct: 133 AFAAATGVMPLDM--PESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNV 190 Query: 290 FFGSGFE----SMVLADRA-TIANMAPEYGATCGFFPVDRGT-IDYLRL----------S 333 F G E + ++A + + + E A +D+ I+YL + Sbjct: 191 FNGRILEIEGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIAN 250 Query: 334 GRSNS-----RVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVS-PSVAGPRRPES 387 G ++ R+ +E + + D D E A +++DL ++ P +A P P+ Sbjct: 251 GYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAA---VIEIDLDDIKEPILACPNDPDD 307 Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447 LSEV +DE + + C ++ G Sbjct: 308 VKLLSEV-------------AGKKIDEVF-IGSCMTNI--GHFRA--------------- 336 Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 A + R ++ WV AP +++ + L + G G GC+ C Sbjct: 337 --AAKILRGK--EFKPTRLWV----APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 +GN + + V + + RNF+ R+ E YL S L AL G + Sbjct: 389 MGN--------QARVADGATVFS---TSTRNFDNRVGKGAEV-YLGSAELAAVCALLGRI 436 |
Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3. Length = 436 |
>gnl|CDD|161741 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
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Score = 104 bits (260), Expect = 1e-22 Identities = 97/359 (27%), Positives = 142/359 (39%), Gaps = 27/359 (7%) Query: 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATD 269 T V DSHT+ A G L +G+G E E + + + + EV G L G+TA D Sbjct: 123 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182 Query: 270 LVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDY 329 ++L I G +EF G + + R T+ NMA E GA G D T +Y Sbjct: 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEY 242 Query: 330 LRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRL 389 + GR ++ + + K W+ E F + L+ ++SP V P L Sbjct: 243 CK--GRPHAPKG--KEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVL 298 Query: 390 SL-SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIAS--ITSCTNTFNPSV 446 + SEVP + K+ + + G + D+ + I SCTN S Sbjct: 299 PVNSEVPDP--ESFADPVDKA-SAERALAYMGLEPGTPLKDIKVDKVFIGSCTN----SR 351 Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506 + L A AV G K VK PGS + + GL + GF GC+ Sbjct: 352 I--EDLRAAAAVIKGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSM 409 Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 C+G + E + NRNFEGR +L+SP + A A+ G Sbjct: 410 CLGMNNDRLPEGERCAS----------TSNRNFEGRQGRGGR-THLVSPAMAAAAAIHG 457 |
Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly. Length = 465 |
>gnl|CDD|180112 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated | Back alignment and domain information |
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Score = 83.6 bits (208), Expect = 2e-16 Identities = 110/388 (28%), Positives = 151/388 (38%), Gaps = 84/388 (21%) Query: 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTI 274 DSHT+ A G L +G+G E E + + P+ + EV G L GVTA D++L I Sbjct: 128 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAI 187 Query: 275 TQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331 + K G +EF G ++ + R TI NM+ E GA G D T +YL+ Sbjct: 188 ---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLK 244 Query: 332 LSGRSNSRVDLVEAYTKVQGMWR-----EDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386 GR + E + K W+ ED ++KV + LD ++ P V P Sbjct: 245 --GRPFAPKG--EDWDKAVAYWKTLKSDEDAVFDKV-----VTLDAADIEPQVTWGTNPG 295 Query: 387 SRLSLSEV---PSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHG----DVAI--ASITS 437 +S+ P F + K + + G LK G D+ I I S Sbjct: 296 QVISIDGKVPDPEDFADPV-----KRASAERALAYMG----LKPGTPITDIKIDKVFIGS 346 Query: 438 CTNTFNPSVMIGAG----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV--QA---GL 488 CTN L A AV G K P V+ PGS LV QA GL Sbjct: 347 CTN----------SRIEDLRAAAAVVKGRKVAPGVRALVVPGSG-----LVKAQAEAEGL 391 Query: 489 VEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSG---NRNFEGRIS 544 + GF GC+ C+ N L G NRNFEGR Sbjct: 392 DKIFIEAGFEWREPGCSMCLAMNPDKLP--------------PGERCASTSNRNFEGRQG 437 Query: 545 PDVEANYLLSPPLVVAYALAG---NVRK 569 +L+SP + A A+ G +VR+ Sbjct: 438 KGGR-THLVSPAMAAAAAITGHFVDVRE 464 |
Length = 466 |
>gnl|CDD|31250 COG1049, AcnB, Aconitase B [Energy production and conversion] | Back alignment and domain information |
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Score = 51.1 bits (122), Expect = 1e-06 Identities = 93/389 (23%), Positives = 145/389 (37%), Gaps = 86/389 (22%) Query: 208 PDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLG-CPISMLLPEVVGFEVTGSLQEGV 265 PDT G DSHT +GI G+ A AA G P+ M PE V G +Q G+ Sbjct: 480 PDTVGTGGDSHTRF--PIGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPGI 535 Query: 266 TATDLVLTITQMLRKEGVVS-----KFVEFFGSGFE----SMVLADRA-TIANMAPEYGA 315 T DLV I K+G+++ K F G E + ++A + + + E A Sbjct: 536 TLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSA 595 Query: 316 T-CGFFPVDRGTIDYLRL----------SGRSNS-----RVDLVEAYTKVQGMWREDIDY 359 C I+YL+ G ++ R+D +EA+ + D D Sbjct: 596 AGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADA 655 Query: 360 EKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418 E A +++DL ++ P +A P P+ LSEV +DE + + Sbjct: 656 EYAAV---IEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------KIDEVF-I 698 Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 C ++ H AG L NA + L ++ WV AP +++ Sbjct: 699 GSCMTNIGH-------------------FRAAGKLLENA-KGELPTRLWV----APPTKM 734 Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538 L + G G + GC+ C+GN + + V + + RN Sbjct: 735 DAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARVAD--------GATVFS---TSTRN 783 Query: 539 FEGRISPDVEANYLLSPPLVVAYALAGNV 567 F R+ YL S L A+ G + Sbjct: 784 FPNRLGKGANV-YLASAELAAVCAILGKI 811 |
Length = 852 |
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2 | Back alignment and domain information |
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Score = 43.7 bits (103), Expect = 2e-04 Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 89/390 (22%) Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264 PDT VGT DSHT LGI G+ A AA G P+ M PE V G +Q G Sbjct: 479 PDT-VGTGGDSHTRF--PLGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPG 533 Query: 265 VTATDLVLTITQMLRKEGVVS-----KFVEFFGSGFESMVLADRAT-----IANMAPEYG 314 +T DLV I K+G+++ K F G E L D + + + E Sbjct: 534 ITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIEGLPDLKVEQAFELTDASAERS 593 Query: 315 ATCGFFPVDRGT-IDYLR----------LSGRSNS-----RVDLVEAYTKVQGMWREDID 358 A +++ I+YL G + R+ +E + + D D Sbjct: 594 AAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADAD 653 Query: 359 YEKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYP 417 E A +++DL + P +A P P+ LSEV + +DE + Sbjct: 654 AEYAAV---IEIDLAEIKEPILAAPNDPDDVRPLSEV-------------QGDKIDEVF- 696 Query: 418 VKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQ 477 I SC N AG + A L ++ WV AP ++ Sbjct: 697 -----------------IGSCMT--NIGHFRAAGKILDAA--GQLPTRLWV----APPTR 731 Query: 478 VSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537 + + L + G A G GC+ C+GN + + V + + R Sbjct: 732 MDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVADGAT--------VFS---TSTR 780 Query: 538 NFEGRISPDVEANYLLSPPLVVAYALAGNV 567 NF R+ YL S L AL G + Sbjct: 781 NFPNRMGTGANV-YLGSAELAAVCALLGKI 809 |
Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria. Length = 844 |
>gnl|CDD|73200 cd00404, Aconitase_swivel, Aconitase swivel domain | Back alignment and domain information |
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Score = 73.5 bits (180), Expect = 3e-13 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 769 PLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISW 828 P VV YG GSSR+ AA RLLG R+VIA+SF RI NL+ G++P F + Sbjct: 16 PGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDY 75 Query: 829 KNLNIKGDEI 838 L+ GDE+ Sbjct: 76 LKLHT-GDEL 84 |
Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.. Length = 88 |
>gnl|CDD|73275 cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins | Back alignment and domain information |
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Score = 55.9 bits (135), Expect = 5e-08 Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 ++ AG +G GSSR+ A + G+R+VIAESF RI N I G++P + Sbjct: 20 IIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEV 79 Query: 831 LNIKGDEI 838 GDE+ Sbjct: 80 EAKPGDEV 87 |
3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.. Length = 91 |
>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional | Back alignment and domain information |
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Score = 52.9 bits (127), Expect = 3e-07 Identities = 20/50 (40%), Positives = 36/50 (72%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPF 820 ++ AG +G GSSR++A + ++LG+ ++IA+S+ RI NL+ +G+ PF Sbjct: 52 ILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPF 101 |
Length = 166 |
>gnl|CDD|30415 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 49.8 bits (119), Expect = 3e-06 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 ++ AG +G GSSR+ A + G+R+VIA SF I N I G++P + + Sbjct: 65 ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124 Query: 831 LN-IKGDEI-INIRKLKTISPR 850 + GDE+ +++ + +P Sbjct: 125 FEDVPGDEVTVDLETGEVTNPT 146 |
Length = 191 |
>gnl|CDD|179025 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed | Back alignment and domain information |
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Score = 49.1 bits (118), Expect = 6e-06 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWK- 829 ++ AG +G GSSR+ A + GV +VIA+SF RI N I +G +P K Sbjct: 51 IIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECDEAVDKI 109 Query: 830 ------NLNIKGDEIINIRKLKTIS--PRQESTLEI 857 ++++ I N+ + P E LEI Sbjct: 110 EDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEI 145 |
Length = 163 |
>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional | Back alignment and domain information |
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Score = 43.2 bits (101), Expect = 3e-04 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK-GDEI- 838 GSSR+ AA G + VIA SF IH +N + G++P + + K +K D++ Sbjct: 3 GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVT 62 Query: 839 INIRKLKTISPRQESTLEI 857 +++ + K ISP +E T EI Sbjct: 63 VDLEQQKIISPVEEFTFEI 81 |
Length = 119 |
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional | Back alignment and domain information |
---|
Score = 58.5 bits (142), Expect = 8e-09 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 35/214 (16%) Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235 VPP + HQ E + G+ I +G+DSHT ALG + G GG E Sbjct: 123 VPPHIAVIHQYMREMMAGG-------GKMI------LGSDSHTRY-GALGTMAVGEGGGE 168 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSG 294 +L + P VV +TG GV D+ L I + K G V +K +EF G G Sbjct: 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPG 228 Query: 295 FESMVLADRATIANMAPEYGATC--GFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352 ++ R + M E TC + D ++L L GR + Y + Sbjct: 229 VSALSTDFRNGVDVMTTE--TTCLSSIWQTDEEVHNWLALHGRG-------QDYCE---- 275 Query: 353 WREDIDYEKVAFTKKM-KLDLGNVSPSVAGPRRP 385 ++ + +A+ +DL + P +A P P Sbjct: 276 ----LNPQPMAYYDGCISVDLSAIKPMIALPFHP 305 |
Length = 751 |
>gnl|CDD|162692 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
---|
Score = 52.8 bits (127), Expect = 4e-07 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 21/124 (16%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 V+ AG +G GSSR+ AA + G+ +VIAESF RI N I +G+ + Sbjct: 50 VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLI-----EAKTE 104 Query: 831 LNIKGDEI-INIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889 GDE+ +++ + E +K P+ D L EI L+ GG+L+ Sbjct: 105 GIKDGDEVTVDLETGEIRVNGNE----------EYKGEPL---PDFLLEI--LREGGLLE 149 Query: 890 AVLR 893 + + Sbjct: 150 YLKK 153 |
This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities. Length = 154 |
>gnl|CDD|181718 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
---|
Score = 42.5 bits (101), Expect = 5e-04 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Query: 208 PDTCVGT--DSHTTMINALGILGWGVG-GIEAEAAMLG-CPISMLLPEVVGFEVTGSLQE 263 PDT VGT DSHT +GI + G G+ A AA G P+ M PE V G +Q Sbjct: 478 PDT-VGTGGDSHTRF--PIGI-SFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQP 531 Query: 264 GVTATDLVLTI-TQMLRK 280 G+T DLV I +++ Sbjct: 532 GITLRDLVHAIPYYAIKQ 549 |
Length = 835 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 896 | aconitate hydratase [Candidatus Liberibacter asiaticus | ||
TIGR01341 | 896 | aconitase_1 aconitate hydratase 1; InterPro: IPR006249 | 100.0 | |
PRK12881 | 896 | acnA aconitate hydratase; Provisional | 100.0 | |
PRK09277 | 884 | aconitate hydratase; Validated | 100.0 | |
PTZ00092 | 887 | aconitate hydratase; Provisional | 100.0 | |
COG1048 | 861 | AcnA Aconitase A [Energy production and conversion] | 100.0 | |
KOG0452 | 892 | consensus | 100.0 | |
TIGR02333 | 864 | 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-de | 100.0 | |
PRK07229 | 648 | aconitate hydratase; Validated | 100.0 | |
PRK11413 | 751 | hypothetical protein; Provisional | 100.0 | |
TIGR01340 | 761 | aconitase_mito aconitate hydratase, mitochondrial; Inte | 100.0 | |
KOG0453 | 778 | consensus | 100.0 | |
TIGR01342 | 658 | acon_putative aconitate hydratase, putative; InterPro: | 100.0 | |
cd01586 | 404 | AcnA_IRP Aconitase A catalytic domain. Aconitase A cata | 100.0 | |
cd01584 | 412 | AcnA_Mitochondrial Aconitase catalyzes the reversible i | 100.0 | |
cd01351 | 389 | Aconitase Aconitase catalytic domain; Aconitase catalyz | 100.0 | |
cd01585 | 380 | AcnA_Bact Aconitase catalyzes the reversible isomerizat | 100.0 | |
cd01583 | 382 | IPMI 3-isopropylmalate dehydratase catalyzes the isomer | 100.0 | |
cd01582 | 363 | Homoaconitase Homoaconitase and other uncharacterized p | 100.0 | |
pfam00330 | 464 | Aconitase Aconitase family (aconitate hydratase). | 100.0 | |
PRK12466 | 472 | isopropylmalate isomerase large subunit; Provisional | 100.0 | |
PRK05478 | 466 | isopropylmalate isomerase large subunit; Validated | 100.0 | |
PRK00402 | 419 | 3-isopropylmalate dehydratase large subunit; Reviewed | 100.0 | |
TIGR01343 | 432 | hacA_fam homoaconitate hydratase family protein; InterP | 100.0 | |
TIGR02086 | 431 | IPMI_arch 3-isopropylmalate dehydratase, large subunit; | 100.0 | |
COG0065 | 423 | LeuC 3-isopropylmalate dehydratase large subunit [Amino | 100.0 | |
cd01581 | 436 | AcnB Aconitate hydratase B catalyses the formation of c | 100.0 | |
TIGR00170 | 472 | leuC 3-isopropylmalate dehydratase, large subunit; Inte | 100.0 | |
TIGR02083 | 419 | LEU2 3-isopropylmalate dehydratase, large subunit; Inte | 100.0 | |
KOG0454 | 502 | consensus | 99.88 | |
cd01580 | 171 | AcnA_IRP_Swivel Aconitase A swivel domain. This is the | 100.0 | |
cd01578 | 149 | AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel d | 100.0 | |
pfam00694 | 131 | Aconitase_C Aconitase C-terminal domain. Members of thi | 100.0 | |
cd01579 | 121 | AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain | 99.97 | |
cd01674 | 129 | Homoaconitase_Swivel Homoaconitase swivel domain. This | 99.81 | |
TIGR00171 | 194 | leuD 3-isopropylmalate dehydratase, small subunit; Inte | 97.84 | |
TIGR00139 | 712 | h_aconitase homoaconitase; InterPro: IPR004418 Homoacon | 100.0 | |
PRK09238 | 841 | bifunctional aconitate hydratase 2/2-methylisocitrate d | 100.0 | |
COG1049 | 852 | AcnB Aconitase B [Energy production and conversion] | 100.0 | |
TIGR00117 | 864 | acnB aconitate hydratase 2; InterPro: IPR004406 Aconita | 99.83 | |
KOG0454 | 502 | consensus | 100.0 | |
PRK00439 | 163 | leuD 3-isopropylmalate dehydratase small subunit; Revie | 99.95 | |
TIGR02087 | 159 | LEUD_arch 3-isopropylmalate dehydratase, small subunit; | 99.92 | |
COG0066 | 191 | LeuD 3-isopropylmalate dehydratase small subunit [Amino | 99.88 | |
PRK01641 | 201 | leuD isopropylmalate isomerase small subunit; Provision | 99.71 | |
TIGR02084 | 156 | leud 3-isopropylmalate dehydratase, small subunit; Inte | 99.39 | |
cd00404 | 88 | Aconitase_swivel Aconitase swivel domain. Aconitase (ac | 99.93 | |
cd01577 | 91 | IPMI_Swivel Aconatase-like swivel domain of 3-isopropyl | 99.86 | |
PRK09238 | 841 | bifunctional aconitate hydratase 2/2-methylisocitrate d | 96.46 | |
COG1049 | 852 | AcnB Aconitase B [Energy production and conversion] | 93.37 | |
pfam01268 | 555 | FTHFS Formate--tetrahydrofolate ligase. | 95.36 | |
pfam04412 | 397 | DUF521 Protein of unknown function (DUF521). Family of | 95.27 | |
cd01355 | 389 | AcnX Putative Aconitase X catalytic domain. Putative Ac | 94.39 | |
PRK13505 | 556 | formate--tetrahydrofolate ligase; Provisional | 94.45 | |
pfam06434 | 204 | Aconitase_2_N Aconitate hydratase 2 N-terminus. This fa | 94.15 | |
COG1679 | 403 | Predicted aconitase [General function prediction only] | 92.84 | |
COG2759 | 554 | MIS1 Formyltetrahydrofolate synthetase [Nucleotide tran | 92.04 |
>TIGR01341 aconitase_1 aconitate hydratase 1; InterPro: IPR006249 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=3168.18 Aligned_cols=874 Identities=60% Similarity=1.005 Sum_probs=850.2 Q ss_pred EEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHH Q ss_conf 37998766878651577854457119999998874048665799999998612355457776636453252200000357 Q gi|254780451|r 19 IDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVP 98 (896) Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~p 98 (896) T Consensus 1 k~~~YYsL~~l~~~G~~ki~~LPySiriLLEs~~Rn~DG~~i~~eD~e~i~~W~~~-~~~d~Ei~FkP~RV~mQDFTGVP 79 (896) T TIGR01341 1 KTYYYYSLKALEESGGGKISKLPYSIRILLESVLRNLDGFSIKEEDVEAILKWKKE-ELKDVEIAFKPARVVMQDFTGVP 79 (896) T ss_pred CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECCCCCC T ss_conf 97355770899846886500041479999999987638842067899888443113-54661467564136752437872 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC Q ss_conf 99999999999997199999928789813998683211005998899989998875426789999877421488078608 Q gi|254780451|r 99 AVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178 (896) Q Consensus 99 a~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pP 178 (896) T Consensus 80 AVVDLA~mR~am~~LGgDp~kINP~vPVDLVIDHSVQVD~~G~~~Ale~N~~LEFeRN~ERY~FLKWa~~AF~N~~vVPP 159 (896) T TIGR01341 80 AVVDLAAMRDAMKNLGGDPEKINPLVPVDLVIDHSVQVDYYGTEEALEKNMELEFERNLERYKFLKWAKKAFKNFKVVPP 159 (896) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCC T ss_conf 78888999999998278812048876523377560675456886799997787521044677766778875314674159 Q ss_pred CCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEE Q ss_conf 87621677898633511310368861798301320688764445201232034348999997077514116728999997 Q gi|254780451|r 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVT 258 (896) Q Consensus 179 G~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~ 258 (896) T Consensus 160 GtGI~HQVNLEYLa~VV~~~~~dG~~~aYPD~lVGTDSHTTMInGlGVLGWGVGGIEAEA~mLGqP~~~~~PeViG~kL~ 239 (896) T TIGR01341 160 GTGIVHQVNLEYLAKVVFEAEKDGELVAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMVVPEVIGVKLT 239 (896) T ss_pred CCCCEEECCHHHHHHHHHHHHCCCCEEECCCEEEECCCCHHHHCCCEEECCCCCHHHHHHHHCCCCEEEECCCEEEEEEE T ss_conf 88516401357889999875228846643652684686310024505612365468888886188628745866777877 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHH Q ss_conf 67786443688999999984102212127999615500178756321200010037203775199899999986399988 Q gi|254780451|r 259 GSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNS 338 (896) Q Consensus 259 G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~ 338 (896) T Consensus 240 GKl~~G~TATDlVL~VTqmLRK~gVVgKFVEFfGpg~~~LslaDRATIANM~PEYGATcgfFPiD~~TL~YLrLTGR~~d 319 (896) T TIGR01341 240 GKLREGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLKELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDED 319 (896) T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCC T ss_conf 42586886211352310122113764423574067620077633010322782045542689734888877541584874 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHH--HHHHCCCHH---- Q ss_conf 9999998746410236767667--88630699998031430122656656413677730116687--664001100---- Q gi|254780451|r 339 RVDLVEAYTKVQGMWREDIDYE--KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTE--MNEYYKKSH---- 410 (896) Q Consensus 339 ~v~lve~Y~ka~~l~~~~~~d~--~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~--~~~~~~~~~---- 410 (896) T Consensus 320 ~v~~vekY~~aqglF~~P~s~~eskp~yt~~~ElDLs~vEp~~aGPKrPqdR~~L~~v~~~F~~~neL~~~~G~~~f~l~ 399 (896) T TIGR01341 320 HVDLVEKYLRAQGLFYDPDSEEESKPKYTDVVELDLSDVEPSVAGPKRPQDRVPLKEVKASFKSSNELESNAGDKGFALR 399 (896) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 13886898996656268888745771020188863123550237867853257868878988755210146765442114 Q ss_pred -----HHHHH----CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH Q ss_conf -----23210----245788888755544575310467654599987788999889864987586730797016189999 Q gi|254780451|r 411 -----TLDEK----YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYE 481 (896) Q Consensus 411 -----~~~~~----~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~ 481 (896) T Consensus 400 aeeenK~~~~k~~nfnfnG~~~~l~dGavVIAAITSCTNTSNP~VmlgAGLlAKKAVelGLkV~P~vKTSLAPGS~VVt~ 479 (896) T TIGR01341 400 AEEENKEPKEKKLNFNFNGKELQLKDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTD 479 (896) T ss_pred CHHHCCCHHHHEEEECCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH T ss_conf 42212431252022001784015347888997202687775267999999888888515883188146740878635898 Q ss_pred HHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHH Q ss_conf 99985885777750530205532242127776883022101136635878633676666546854331000597899999 Q gi|254780451|r 482 YLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAY 561 (896) Q Consensus 482 ~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~ 561 (896) T Consensus 480 YL~~sGLlpYL~~LGF~lVGYGCTTCIGNSGPL~~~~e~AI~~NdL~~~aVLSGNRNFEGRIHPLvK~NyLASPPLVVAY 559 (896) T TIGR01341 480 YLAESGLLPYLEELGFNLVGYGCTTCIGNSGPLPEEVEEAIVKNDLVVVAVLSGNRNFEGRIHPLVKANYLASPPLVVAY 559 (896) T ss_pred HHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHH T ss_conf 97430640368861972761443202068888878899896628828999831554633201600123534572579898 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC Q ss_conf 85161222310023554888863200156888578888876415832100012233478712201557877620567433 Q gi|254780451|r 562 ALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKS 641 (896) Q Consensus 562 AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~S 641 (896) T Consensus 560 ALAG~~~Inl~~~PIG~d~~Gk~VYl~DIWPS~~EI~~~V~~~V~pemF~k~Y~~~~~gN~~Wn~i~~~~~~~Y~WD~kS 639 (896) T TIGR01341 560 ALAGNVDINLETDPIGTDKDGKPVYLKDIWPSNKEIAEVVNKAVKPEMFKKEYEEVTEGNERWNKIEVTSSDLYEWDEKS 639 (896) T ss_pred HHCCCEEECCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCC T ss_conf 51481355457787106877977886244775889999998512645678865222022033101368875554668875 Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHH Q ss_conf 342378876776545543324--358558999658857233164565554473788898749886563145653023577 Q gi|254780451|r 642 TYVRNPPYFETISKHIPEIVD--ICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEV 719 (896) Q Consensus 642 tyI~~pPff~~~~~~~~~~~~--i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhev 719 (896) T Consensus 640 TYIr~PPfF~e~~~~P~~~~dfrikgAr~Ll~lGDSiTTDHISPAGsI~kDSPAgkYL~e~GV~r~DFNSYGSRRGNHEV 719 (896) T TIGR01341 640 TYIRNPPFFEEMKLEPEEVEDFRIKGARILLLLGDSITTDHISPAGSIKKDSPAGKYLQERGVSRRDFNSYGSRRGNHEV 719 (896) T ss_pred CCCCCCCCCCCCEECCCCCCCEEEECCEEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE T ss_conf 31268484467520588889714405488874088053165688887368875788886368886515767876687424 Q ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEE Q ss_conf 76652036012232125777657722453899787379999989981998899946777867307999886676170899 Q gi|254780451|r 720 MMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSV 799 (896) Q Consensus 720 M~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAV 799 (896) T Consensus 720 MmRGTFANiRIkN~~v--~G~EGG~T~h~P~~~~~SvYDAAM~YK~eg~plvv~AGKeYGsGSSRDWAAKGt~LLGvkaV 797 (896) T TIGR01341 720 MMRGTFANIRIKNLMV--KGKEGGYTVHLPDGEVLSVYDAAMKYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAV 797 (896) T ss_pred CCCCCCCCHHEEEEEC--CCEECCEEEEECCCCCEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEE T ss_conf 0467522600052240--66037856664188434500444341017888799942404898860466308854514799 Q ss_pred EECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCE--EEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHH Q ss_conf 97647898885053552322331789898881989743--8997263225899738999981899679999998738999 Q gi|254780451|r 800 IAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE--IINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLD 877 (896) Q Consensus 800 IA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E--~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~ 877 (896) T Consensus 798 IAeSFERIHRSNLVgMGviPl~f~~g~~a~TLGl~G~E~~~id~~~i~~~~Pg~~vtv~~~~~~G~~~t~~~~~R~Dt~v 877 (896) T TIGR01341 798 IAESFERIHRSNLVGMGVIPLEFKQGEDAETLGLTGEELITIDVDDIKEIKPGKEVTVTLTNKDGEKETFECVLRIDTEV 877 (896) T ss_pred EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCHH T ss_conf 83253303323324304122105888871125787536999865886634889702589983689788997888725468 Q ss_pred HHHHHHCCCHHHHHHHHH Q ss_conf 999999098368988872 Q gi|254780451|r 878 EINHLKNGGILQAVLRQL 895 (896) Q Consensus 878 E~~~~~~GGiL~yvlr~l 895 (896) T Consensus 878 El~Y~~~GGILqYVlr~~ 895 (896) T TIGR01341 878 ELDYYKHGGILQYVLRKL 895 (896) T ss_pred HHHHHHCCCCHHHHHHHH T ss_conf 988863588315788740 |
2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents bacterial aconitase A (AcnA), eukaryotic cytosolic aconitase (cAcn/IRP1), iron regulatory protein 2 (IRP2), and a few mitochondrial aconitases (certain mAcn proteins, but not the majority of these enzymes). More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0051539 4 iron 4 sulfur cluster binding, 0008152 metabolic process. |
>PRK12881 acnA aconitate hydratase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=2734.06 Aligned_cols=888 Identities=59% Similarity=0.979 Sum_probs=862.7 Q ss_pred CCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 77770012144328837998766878651577854457119999998874048665799999998612355457776636 Q gi|254780451|r 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVS 83 (896) Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~ 83 (896) T Consensus 1 ~~~~~~~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~rillEn~lR~~d~~~v~~~~v~~~~~w~~~-~~~~~ei~ 79 (896) T PRK12881 1 AHNLLKTLKEFDVGSKTGKFYSLPALGAELGGDIERLPVSLRVLLENLLRNEDGKKVTEAHLRALANWLPE-AKRDDEIP 79 (896) T ss_pred CCCCCCCCCEEEECCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCEEC T ss_conf 99751364158989977899618997753389854388129999999987179876889999999852413-89874244 Q ss_pred CCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45325220000035799999999999997199999928789813998683211005998899989998875426789999 Q gi|254780451|r 84 YRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFL 163 (896) Q Consensus 84 f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Fl 163 (896) T Consensus 80 f~p~Rv~lqDftgvPa~vDlAamRda~~~~g~dp~~inP~~pvdlviDHSv~vd~~g~~~a~~~N~~~E~~RN~ERy~fl 159 (896) T PRK12881 80 FVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFL 159 (896) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 34335874337795187639989999998099977749999862586261788516885688876567765307888889 Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCC Q ss_conf 87742148807860887621677898633511310368861798301320688764445201232034348999997077 Q gi|254780451|r 164 KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 (896) Q Consensus 164 kwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGq 243 (896) T Consensus 160 kW~q~af~n~rvvPPg~GI~HQvNlEyla~vv~~~~~~~~~~~~pDtlvGTDSHT~minGLGvlgwGVGGieAeaaMlGq 239 (896) T PRK12881 160 KWGMQAFDNFRVVPPGTGIVHQVNLEYLARVVHTKEEDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 239 (896) T ss_pred HHHHHHHCCCEEECCCCCEEEEEEHHHHHHHEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCC T ss_conf 99998742745428998523433177641113752027884570564115677777678624788634649999987499 Q ss_pred CCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCC Q ss_conf 51411672899999767786443688999999984102212127999615500178756321200010037203775199 Q gi|254780451|r 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVD 323 (896) Q Consensus 244 p~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~D 323 (896) T Consensus 240 P~~m~~P~VvGv~LtG~L~~gvTatDlvL~it~~Lr~~GvvGkfVEffG~G~~~LS~~dRATIaNM~pEyGAT~g~FP~D 319 (896) T PRK12881 240 PVSMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFYGEGTASLSLGDRATIANMAPEYGATMGFFPVD 319 (896) T ss_pred CEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEHHHCCCCCCCEEEECCCC T ss_conf 55523775799998602699975889999999998654875279999773322456433000233172328724578988 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHH Q ss_conf 89999998639998899999987464102367676678863069999803143012265665641367773011668766 Q gi|254780451|r 324 RGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN 403 (896) Q Consensus 324 e~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~ 403 (896) T Consensus 320 ~~Tl~YLr~TgR~~~~i~lve~y~k~q~L~~d~--~~~~~Y~~vieiDLs~veP~iAGP~rPqdrv~l~~~~~~f~~~~~ 397 (896) T PRK12881 320 EKTLDYLRLTGRTEAEIALVEAYFKAQGLWGDP--KAEPDYTKTLTLDLSTVAPSLAGPKRPQDRIALGNVKSAFTDLFS 397 (896) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 799999998099889999999998755855588--988650327998812451023699980000244566788999864 Q ss_pred HHCCCHH-----HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH Q ss_conf 4001100-----23210245788888755544575310467654599987788999889864987586730797016189 Q gi|254780451|r 404 EYYKKSH-----TLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 (896) Q Consensus 404 ~~~~~~~-----~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~ 478 (896) T Consensus 398 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~VvIAaItSCTNTSnp~vm~aAgLlAkkAv~~GLkvkp~VKtslaPGSrv 477 (896) T PRK12881 398 KPVAENGFAKAAEDLPAQYTTGNGVDLKDGAVLIAAITSCTNTSNPSVLLAAGLLAKKAVEKGLTRKPWVKTSLAPGSKV 477 (896) T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHH T ss_conf 22101466655343332014665555577878999974335778688999999999999975995488731316887799 Q ss_pred HHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHH Q ss_conf 99999985885777750530205532242127776883022101136635878633676666546854331000597899 Q gi|254780451|r 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLV 558 (896) Q Consensus 479 V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lV 558 (896) T Consensus 478 V~~yL~~~Gll~~L~~lGf~vvgyGC~tCIGnsGpL~~~i~~ai~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaSP~LV 557 (896) T PRK12881 478 VTEYLEKAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEEAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLV 557 (896) T ss_pred HHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCHHH T ss_conf 99999986888889976968954555324589888880555431127823877850577877567975100674180999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC Q ss_conf 99985161222310023554888863200156888578888876415832100012233478712201557877620567 Q gi|254780451|r 559 VAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWD 638 (896) Q Consensus 559 vA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~ 638 (896) T Consensus 558 vAyAlaG~i~~d~~~dPlg~d~dG~~V~L~DiwPs~~EI~~~~~~~v~p~~f~~~y~~v~~g~~~w~~l~~~~~~~y~Wd 637 (896) T PRK12881 558 VAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSEEIDALLAFAVDPEMFRKNYAEVFKGGELWQAIEGPQGQLYDWD 637 (896) T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99997297445655675443889984202355887567888875268977843301344578655542346887643458 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHH Q ss_conf 43334237887677654554332435855899965885723316456555447378889874988656314565302357 Q gi|254780451|r 639 EKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHE 718 (896) Q Consensus 639 ~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhe 718 (896) T Consensus 638 ~~StyI~~PPff~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~SpAG~yL~~~gv~~~dfNsYgsRRgNhe 717 (896) T PRK12881 638 PKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSVTTDHISPAGAIKADSPAGKYLKENGVQKADFNSYGSRRGNHE 717 (896) T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHH T ss_conf 88775407998665666777765643655999948976625507666667778226779871998444122343045546 Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 77665203601223212577765772245389978737999998998199889994677786730799988667617089 Q gi|254780451|r 719 VMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRS 798 (896) Q Consensus 719 vM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkA 798 (896) T Consensus 718 vM~RGtFaNirl~N~l~--~~~eGg~t~~~p~ge~~~i~daA~~Y~~~g~plVVvAG~~YG~GSSRDwAAkgp~lLGVkA 795 (896) T PRK12881 718 VMMRGTFANVRIKNLMA--PGKEGGLTLHQPSGEQLSIYDAAMRYQAEGTPLVVFAGEEYGTGSSRDWAAKGTRLLGVKA 795 (896) T ss_pred HHHHHCCCCHHHHHHCC--CCCCCCEEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEE T ss_conf 65430013302331015--6666750465588855009999999998099769995475677408999985476548799 Q ss_pred EEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHH-HCCCCCEEEEEEEECCCCEEEEEEEEEECCHH Q ss_conf 99764789888505355232233178989888198974389972632-25899738999981899679999998738999 Q gi|254780451|r 799 VIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLK-TISPRQESTLEIHYSDGTFKCVPIICCIDTLD 877 (896) Q Consensus 799 VIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~-~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~ 877 (896) T Consensus 796 VIAeSFeRIHrsNLvgmGVLPL~F~~g~~~~sL~L~G~E~~~I~gl~~~l~p~~~v~v~~~~~dG~~~~f~~~~ridT~~ 875 (896) T PRK12881 796 VIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGSETFDIEGLGDDLKPRQTVTLVIHRADGSTQRVPVLCRIDTPI 875 (896) T ss_pred EEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCHH T ss_conf 99960788998751425635546569998766089977349884764567999868999994899689999999649999 Q ss_pred HHHHHHCCCHHHHHHHHHC Q ss_conf 9999990983689888729 Q gi|254780451|r 878 EINHLKNGGILQAVLRQLS 896 (896) Q Consensus 878 E~~~~~~GGiL~yvlr~la 896 (896) T Consensus 876 E~~y~~~GGiL~yVlr~~~ 894 (896) T PRK12881 876 EVEYYKHGGILPYVLRQLL 894 (896) T ss_pred HHHHHHCCCCHHHHHHHHH T ss_conf 9999980891999999986 |
|
>PRK09277 aconitate hydratase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=2711.63 Aligned_cols=881 Identities=63% Similarity=1.041 Sum_probs=857.9 Q ss_pred CCCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 77777001214432883799876687865157785445711999999887404866579999999861235545777663 Q gi|254780451|r 3 RSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896) Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896) T Consensus 2 ~~~~~~~~~~~l~~~g~~~~y~~l~~~~~~~~~~~~~lP~sirvllEn~lR~~~~~~v~~~~v~~~~~w~~-~~~~~~ei 80 (884) T PRK09277 2 SSLDSFKYRKTLEVGGKSYDYYDLKALEAIGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLP-KAKPDREI 80 (884) T ss_pred CCCCCCCCCEEEEECCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEE T ss_conf 87787677507998998889963899876258985438812999999998607987688999999984342-28988525 Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999 Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896) Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896) T Consensus 81 ~f~p~Rv~lqDftgvPa~vDlAamRda~~~~G~dp~~inP~vpvdlviDHSv~vd~~g~~~a~~~N~~~Ef~RN~ERy~f 160 (884) T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGDPDAFEKNVALEFERNEERYQF 160 (884) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 53333587433779418763998999999819996774999986269757388623789689998888888765899999 Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707 Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896) Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896) T Consensus 161 lkW~~~af~n~~vvPPg~GI~HQvNlE~la~vv~~~~~~-~~~~~pDtlvGTDSHTpminGLGvlgwGVGGieAeaaMlG 239 (884) T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTRDGG-GLVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLG 239 (884) T ss_pred HHHHHHHHCCCEEECCCCCEEEEEEHHHHCCEEEECCCC-CEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCC T ss_conf 999998744767748998611000155525136861588-2599456200668766666752588862364999998748 Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519 Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896) Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896) T Consensus 240 ~P~~~~~P~VvGv~LtG~L~~~vtatDlvL~it~~Lr~~GvvGkfVEffG~Gv~~LS~~dRATIaNM~pEyGAT~~~FP~ 319 (884) T PRK09277 240 QPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPI 319 (884) T ss_pred CCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCHHHHHHCCCCCCCEEEECCC T ss_conf 97585468689999851169997688999999999986386504999856513036620023333037344872557788 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHH Q ss_conf 98999999863999889999998746410236767667886306999980314301226566564136777301166876 Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 (896) Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~ 402 (896) T Consensus 320 D~~Tl~YL~~TGR~~~~v~lve~Y~k~qgL~~~~-~~~~~~Y~~vieiDLs~veP~iAGP~rP~d~v~ls~~~~~~~~~~ 398 (884) T PRK09277 320 DEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDP-DSAEPVYTRVLELDLSTVEPSLAGPKRPQDRVPLSDLKEAFIKAL 398 (884) T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCEEEEEEHHHCEEECCCCCCHHHCCCHHHHHHHHHHHH T ss_conf 8899999998399989999999999861731366-889975442699982004240158998331356888778888752 Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHH Q ss_conf 64001100232102457888887555445753104676545999877889998898649875867307970161899999 Q gi|254780451|r 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEY 482 (896) Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~ 482 (896) T Consensus 399 ~~~~~~--------~~~~~~~~l~~G~VvIAAItSCTNTSnp~~miaAgLlAkkAv~~GL~vkp~VKtslaPGS~vV~~y 470 (884) T PRK09277 399 EAEAGN--------KGNGGEYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKRKPWVKTSLAPGSKVVTEY 470 (884) T ss_pred CCCCCC--------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHH T ss_conf 221244--------677754224677379998621247887889999999999999739976887333338877999999 Q ss_pred HHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHH Q ss_conf 99858857777505302055322421277768830221011366358786336766665468543310005978999998 Q gi|254780451|r 483 LVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYA 562 (896) Q Consensus 483 L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~A 562 (896) T Consensus 471 L~~~GLl~~L~~lGf~v~g~gC~tCIGnSGpL~~~i~~~I~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaSP~LVvAyA 550 (884) T PRK09277 471 LEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYA 550 (884) T ss_pred HHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHH T ss_conf 99868788999759789413342024788889815652023078446445515768776689651204622809999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC Q ss_conf 51612223100235548888632001568885788888764158321000122334787122015578776205674333 Q gi|254780451|r 563 LAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKST 642 (896) Q Consensus 563 iaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~St 642 (896) T Consensus 551 lAG~i~~d~~~dpLg~d~~G~~VyL~DiwPs~~EI~~~~~~~v~p~~f~~~y~~i~~g~~~w~~l~~~~~~~y~wd~~St 630 (884) T PRK09277 551 LAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKVYADVFKGDEEWNEIQVPSGPLYDWDPDST 630 (884) T ss_pred HHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 74804136666875528999863143458982557899873479767556313445797333313479886435588875 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH Q ss_conf 42378876776545543324358558999658857233164565554473788898749886563145653023577766 Q gi|254780451|r 643 YVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMR 722 (896) Q Consensus 643 yI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~R 722 (896) T Consensus 631 yI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~gv~~~dfNsYgsrRgNhevm~R 710 (884) T PRK09277 631 YIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVPPKDFNSYGSRRGNHEVMMR 710 (884) T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCHHHCCCCCHHHHH T ss_conf 42279864556677888767557658999489756155076777777880678999739975660130220267233210 Q ss_pred HHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEC Q ss_conf 52036012232125777657722453899787379999989981998899946777867307999886676170899976 Q gi|254780451|r 723 GTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802 (896) Q Consensus 723 GtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~ 802 (896) T Consensus 711 gtFaNiri~N~l~--~~~egg~T~~~p~g~~~~i~daA~~Y~~~g~plVViAG~nYG~GSSRDwAAkgp~lLGVkAVIAe 788 (884) T PRK09277 711 GTFANIRIRNEMV--PGVEGGYTRHEPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAE 788 (884) T ss_pred HCCCCHHHHHHCC--CCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCHHHCCEEEEEEE T ss_conf 0113345664306--77668704755898540199999999982997699956766777528899745443257999995 Q ss_pred CHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHH Q ss_conf 47898885053552322331789898881989743899726322589973899998189967999999873899999999 Q gi|254780451|r 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHL 882 (896) Q Consensus 803 SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~ 882 (896) T Consensus 789 SFeRIHrsNLvgmGVLPL~F~~g~~~~~L~l~g~E~~~I~g~~~l~p~~~v~v~~~~~dG~~~~~~~~~ridt~~E~~y~ 868 (884) T PRK09277 789 SFERIHRSNLVGMGVLPLQFKPGENRKTLGLDGTETFDIIGLEELKPRATVTVVITRADGEVVEVPVTCRIDTAVEVDYY 868 (884) T ss_pred EHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHH T ss_conf 06889887505266254565799898772999773498746455799886899999389988999999964999999999 Q ss_pred HCCCHHHHHHHHHC Q ss_conf 90983689888729 Q gi|254780451|r 883 KNGGILQAVLRQLS 896 (896) Q Consensus 883 ~~GGiL~yvlr~la 896 (896) T Consensus 869 ~~GGiL~yVlr~~l 882 (884) T PRK09277 869 RNGGILQYVLRDLL 882 (884) T ss_pred HCCCHHHHHHHHHH T ss_conf 80891999999996 |
|
>PTZ00092 aconitate hydratase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=2669.19 Aligned_cols=875 Identities=54% Similarity=0.902 Sum_probs=842.4 Q ss_pred CCCCC-CCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 77770-01214432883799876687865157785445711999999887404866579999999861235545777663 Q gi|254780451|r 4 SLNSF-NCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896) Q Consensus 4 ~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896) T Consensus 3 ~~~~~~~~~~~l~~~g~~~~y~~l~~l~~~---~~~~LP~s~rillEn~lR~~d~~~v~~~~v~~~~~w~~~-~~~~~ei 78 (887) T PTZ00092 3 RPNPFEKVKKTLKVDGGTAKYYKLNELHDP---RYNSLPYSIRVLLESAVRNCDEFDVTSKDVENILNWKEN-CKKQIEI 78 (887) T ss_pred CCCCHHHHHHHEEECCEEEEEEEHHHHCCC---CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCCCEE T ss_conf 898068887557479836999875783647---845388039999998876168876899999999731003-8988534 Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999 Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896) Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896) T Consensus 79 ~f~p~Rv~lqDftgvP~~vDlAamR~a~~~~g~dp~~inP~~pvdlviDHSv~vd~~g~~~a~~~N~~~E~~RN~ERy~f 158 (887) T PTZ00092 79 PFKPARVLLQDFTGVPCVVDLAAMRDAMKRLGGDPNKINPLIPVDLVIDHSVQVDFSRTPDALELNQKTEMERNRERFEF 158 (887) T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 43332477342668319999998999999818996552899986169755388861688658888788887640687777 Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707 Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896) Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896) T Consensus 159 lkW~q~af~n~rvvPPg~GI~HQvnLE~la~vv~~~----~~~~~pdtlvGTDSHTpminGLGvlgwGVGGieAeaaMlG 234 (887) T PTZ00092 159 LKWGSQAFKNLLIVPPGSGIVHQVNLEYLARVVFNK----DGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEATMLG 234 (887) T ss_pred HHHHHHHHCCCEECCCCCCEEEEEEHHHHHHHEECC----CCEECCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHCC T ss_conf 788888743835428998644321065543524557----8656577521467777777852578864378999998758 Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519 Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896) Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896) T Consensus 235 ~P~~~~~P~VvGv~LtG~L~~gvtatDlvL~it~~Lr~~GvvGkfVEffG~G~~~LS~~dRATIaNM~pEyGAT~~~FP~ 314 (887) T PTZ00092 235 QPISMVLPQVVGFKLVGKLSEGCTATDLVLTVTSNLRKLGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPI 314 (887) T ss_pred CCCEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCEEEECCC T ss_conf 96041078389999883069997588999999988743276605999977752017723420002057433875577887 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHH Q ss_conf 98999999863999889999998746410236767667886306999980314301226566564136777301166876 Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 (896) Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~ 402 (896) T Consensus 315 D~~tl~YL~~TgR~~~~v~lve~y~k~q~l~~~~--~~~~~Y~~vieiDLs~veP~iAGP~rP~d~v~l~~~~~~f~~~~ 392 (887) T PTZ00092 315 DNETIDYLLQTGRSAEKVELIEEYLKANGLFRTG--AEKIEYSDVLELDLSTVQPSVAGPKRPQDNVPLSDLKQDFTACL 392 (887) T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 7789999998399889999999999863511268--77875453799894637132328998022446899788898865 Q ss_pred HHHCCCHH--------HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC Q ss_conf 64001100--------2321024578888875554457531046765459998778899988986498758673079701 Q gi|254780451|r 403 NEYYKKSH--------TLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAP 474 (896) Q Consensus 403 ~~~~~~~~--------~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~P 474 (896) T Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~G~VviAaItSCTNTSnp~vm~aAgLlAkkAv~~GL~v~p~VktslaP 472 (887) T PTZ00092 393 TAKVGFKGFGIPEEEHAKKVKFTYDGQEYTLDHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSP 472 (887) T ss_pred HCCCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC T ss_conf 13234456677500114443131157400027883899997253466877799999999999997698458970044688 Q ss_pred CCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECC Q ss_conf 61899999998588577775053020553224212777688302210113663587863367666654685433100059 Q gi|254780451|r 475 GSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLS 554 (896) Q Consensus 475 GS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaS 554 (896) T Consensus 473 GS~vV~~yL~~~Gll~~L~~lGf~vvg~gC~tCIGnsGpl~~~i~~~i~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaS 552 (887) T PTZ00092 473 GSKVVTKYLEASGLQKYLEKLGFYTTGYGCMTCIGNSGELDPEVSECINNNDLVAAAVLSGNRNFEGRIHPLTRANYLAS 552 (887) T ss_pred CHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEECCC T ss_conf 67999999998686889997596892367856527778888303313345881598874378885445686301113168 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC Q ss_conf 78999998516122231002355488886320015688857888887641583210001223347871220155787762 Q gi|254780451|r 555 PPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESET 634 (896) Q Consensus 555 P~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~ 634 (896) T Consensus 553 P~lVvAyAlaG~i~~d~~~dplg-~~~G~~VyL~DiwPs~~Ei~~~~~~~v~p~~f~~~y~~i~~g~~~w~~l~~~~~~~ 631 (887) T PTZ00092 553 PPLVVAFALAGRVNIDFASEPIG-VKTGKPVFLRDIWPSKEEISALENQYVKPQLFKEVYSNITTGNKQWNELQVPKGEL 631 (887) T ss_pred HHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCCC T ss_conf 79999999718877766667665-77788422435689647665675345680111000356567884552035787666 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHC Q ss_conf 05674333423788767765455433243585589996588572331645655544737888987498865631456530 Q gi|254780451|r 635 YMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRR 714 (896) Q Consensus 635 y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRR 714 (896) T Consensus 632 y~Wd~~STyI~~pPffd~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~sPagkyL~~~gv~~~dfNsygsRR 711 (887) T PTZ00092 632 YEWDPKSTYIHHPPYFEGMTLEPPKIKPIKNAACLLLLGDSITTDHISPAGNIAKDSPAAKFLMEKGVERKDFNTYGSRR 711 (887) T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHC T ss_conf 77898764442798744334467767775687788862897582105815387667820556875698655521056652 Q ss_pred CCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC Q ss_conf 23577766520360122321257776577224538997873799999899819988999467778673079998866761 Q gi|254780451|r 715 GNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 (896) Q Consensus 715 gNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lL 794 (896) T Consensus 712 gNhevM~RgtFaNiri~N~l~~---~~Gg~t~~~p~ge~~~iydaA~~Yk~~g~plVVvAGknYG~GSSRDwAAkgp~lL 788 (887) T PTZ00092 712 GNDEVMVRGTFANTRLGNKLVP---QTGPNTVYVPTGELMSIFDAAMKYKQENTPLIVLAGKEYGSGSSRDWAAKGPYLQ 788 (887) T ss_pred CCHHHHHHHHHCCCHHHHHCCC---CCCCCEEECCCCCEECHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCHHHC T ss_conf 6717765310123202210056---6687424358885611799999999819975999467647875499997476553 Q ss_pred CEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEEC Q ss_conf 70899976478988850535523223317898988819897438997263225899738999981899679999998738 Q gi|254780451|r 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCID 874 (896) Q Consensus 795 GVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~d 874 (896) T Consensus 789 GVkAVIAeSFeRIHrsNLvgmGVLPL~F~~g~~~~~l~l~g~E~~~I~~~~~l~p~~~v~v~----~~~~~~f~~~~rid 864 (887) T PTZ00092 789 GVKAVIAESFERIHRSNLVGMGILPLQFLNGESATSLGLTGKEKFTINLKGNLRPGQTVEVQ----TDTGKSFDTLLRID 864 (887) T ss_pred CEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCCEEEEE----CCCCCEEEEEEECC T ss_conf 86899994128887873142564645657999878748998628998456778999879998----79932899999589 Q ss_pred CHHHHHHHHCCCHHHHHHHHHC Q ss_conf 9999999990983689888729 Q gi|254780451|r 875 TLDEINHLKNGGILQAVLRQLS 896 (896) Q Consensus 875 t~~E~~~~~~GGiL~yvlr~la 896 (896) T Consensus 865 t~~E~~y~~~GGiL~yVlr~~l 886 (887) T PTZ00092 865 TEIEVKYYKNGGILQYVLRKLI 886 (887) T ss_pred CHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999983897999999972 |
|
>COG1048 AcnA Aconitase A [Energy production and conversion] | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=2438.16 Aligned_cols=860 Identities=62% Similarity=1.030 Sum_probs=835.1 Q ss_pred CCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 77001214432883799876687865157785445711999999887404866579999999861235545777663645 Q gi|254780451|r 6 NSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYR 85 (896) Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~ 85 (896) T Consensus 1 ~~~~~~~~~~~~~~~~~y~~l~~~~~~~--~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~-~~~~~ei~~~ 74 (861) T COG1048 1 DSFKARKTLTVGGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPS-GKPEKEIAFR 74 (861) T ss_pred CCCCHHHHCCCCCCEEEEEEHHHHHHCC--CCCCCCHHHHHHHHHHCCCCCC---CHHHHHHHHCCCCC-CCCCCCCCCC T ss_conf 9531222115587335774266665204--5566871599999876156566---06678987503334-6755455654 Q ss_pred CCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32522000003579999999999999719999992878981399868321100599889998999887542678999987 Q gi|254780451|r 86 FSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKW 165 (896) Q Consensus 86 p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkw 165 (896) T Consensus 75 p~RVvmQD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w 154 (861) T COG1048 75 PARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKW 154 (861) T ss_pred CCEEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 23034420248781677415798999866894442887752046255056615787256553335675630688999999 Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC Q ss_conf 74214880786088762167789863351131036886179830132068876444520123203434899999707751 Q gi|254780451|r 166 GQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896) Q Consensus 166 a~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896) T Consensus 155 ~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~~----g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~ 230 (861) T COG1048 155 AAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKP----GVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPW 230 (861) T ss_pred HHHHCCCCEEECCCCCEEEEEHHHHHCCEEECCC----CCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHCCCCE T ss_conf 9985178189789984653142744100010267----655667446426888776861578865652999999838965 Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989 Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896) Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896) T Consensus 231 ~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~ 310 (861) T COG1048 231 YMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEE 310 (861) T ss_pred EEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCHH T ss_conf 84379678999734579997788999999989876274542899977736327766640010356211123154778889 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640 Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896) Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896) T Consensus 311 tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~-~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~ 389 (861) T COG1048 311 TLDYLRLTGRSEEQVALVEAYAKAQGLWYDP-ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREI 389 (861) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEEEHHHCCCCCCCCCCHHHCEEHHHHHHHHHHHHHHH T ss_conf 9999998599567778999999973465776-666775240699885657301159998354208898888898755443 Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998 Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896) Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896) T Consensus 390 ~~~~~-----~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~ 462 (861) T COG1048 390 EIKRV-----YSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462 (861) T ss_pred HCCCC-----CCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH T ss_conf 02210-----012455--47887589999840368997889999999876677605677997157657885899999997 Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC Q ss_conf 58857777505302055322421277768830221011366358786336766665468543310005978999998516 Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896) Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896) T Consensus 463 ~Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG 542 (861) T COG1048 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAG 542 (861) T ss_pred CCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHC T ss_conf 58788999649788445564664899998705542345576178753014778886789746604115829999998752 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 12223100235548888632001568885788888764158321000122334787122015578776205674333423 Q gi|254780451|r 566 NVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVR 645 (896) Q Consensus 566 ~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~ 645 (896) T Consensus 543 ~i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~ 618 (861) T COG1048 543 TINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIR 618 (861) T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC T ss_conf 443686447445688888103210478817778887622485440010011003----3445678767300787674214 Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 78876776545543324358558999658857233164565554473788898749886563145653023577766520 Q gi|254780451|r 646 NPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTF 725 (896) Q Consensus 646 ~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtF 725 (896) T Consensus 619 ~pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tf 695 (861) T COG1048 619 LPPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTF 695 (861) T ss_pred CCCCCCCCCCCCCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHH T ss_conf 89866664345544---456425666368665476667877777885420244249973466421013453777645412 Q ss_pred CCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHH Q ss_conf 36012232125777657722453899787379999989981998899946777867307999886676170899976478 Q gi|254780451|r 726 SNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE 805 (896) Q Consensus 726 aNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFe 805 (896) T Consensus 696 aNir~~n~~~~~---~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFe 769 (861) T COG1048 696 ANIRIRNEMVPG---EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFE 769 (861) T ss_pred CCCCCCCCCCCC---CCCCEEECCCCH---HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCHHCCEEEEEEHHHH T ss_conf 252000100366---676134247732---78999988874997599960468888638888427420373325303688 Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC Q ss_conf 98885053552322331789898881989743899726322589973899998189967999999873899999999909 Q gi|254780451|r 806 RIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG 885 (896) Q Consensus 806 RIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G 885 (896) T Consensus 770 RIHrSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861) T COG1048 770 RIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861) T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHCC T ss_conf 99886123441343640688776552778961576124456799726999997689856777622002989999999827 Q ss_pred CHHHHHHHHHC Q ss_conf 83689888729 Q gi|254780451|r 886 GILQAVLRQLS 896 (896) Q Consensus 886 GiL~yvlr~la 896 (896) T Consensus 850 GiL~~v~~~~~ 860 (861) T COG1048 850 GILNYVKRDLL 860 (861) T ss_pred CHHHHHHHHHH T ss_conf 66989999850 |
|
>KOG0452 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=2410.67 Aligned_cols=877 Identities=52% Similarity=0.897 Sum_probs=844.9 Q ss_pred CCCCC-CCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 77770-01214432883799876687865157785445711999999887404866579999999861235545777663 Q gi|254780451|r 4 SLNSF-NCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896) Q Consensus 4 ~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896) T Consensus 5 ~~~~f~~~~~~l~~~~~~~kyf~l~~l~----~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~-~t~~k~vEv 79 (892) T KOG0452 5 SENPFAQLIETLPKPGGVYKYFDLPKLN----SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWK-NTQKKQVEV 79 (892) T ss_pred CCCCHHHHHHCCCCCCCCCEEEECCCCC----CCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC-CCCCCCEEE T ss_conf 3050899974157888854055432346----53353754379999998744744043387788873766-567553252 Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999 Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896) Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896) T Consensus 80 pFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~F 159 (892) T KOG0452 80 PFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTF 159 (892) T ss_pred CCCCCEEEEECCCCCCHHEEHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHCCEEEEECCHHHHHH T ss_conf 35641566200469825303798999998718997774988875347621168731338777752450022004445135 Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707 Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896) Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896) T Consensus 160 lKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~----~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLG 235 (892) T KOG0452 160 LKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESK----DLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLG 235 (892) T ss_pred HHHHHHHHCCEEEECCCCCEEEEEEHHHHHHEEECCC----CEECCCCCCCCCCCCEEECCCCEEECCCCCEEHHHHHHC T ss_conf 4153476444387679986357750663221033467----535565401456751466264243023465313245516 Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519 Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896) Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896) T Consensus 236 qpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPv 315 (892) T KOG0452 236 QPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPV 315 (892) T ss_pred CCHHEECCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCCEEEEECC T ss_conf 85201044203578615667873010003569999887364213588854862003011366664228000645332003 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHH Q ss_conf 98999999863999889999998746410236767667-88630699998031430122656656413677730116687 Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE-KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTE 401 (896) Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~-~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~ 401 (896) T Consensus 316 D~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~sc 395 (892) T KOG0452 316 DEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSC 395 (892) T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 24678999870874778899999999876655035744685300689984473432168999975543065677789986 Q ss_pred HHHHCC--------CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE Q ss_conf 664001--------100232102457888887555445753104676545999877889998898649875867307970 Q gi|254780451|r 402 MNEYYK--------KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCA 473 (896) Q Consensus 402 ~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~ 473 (896) T Consensus 396 L~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLs 475 (892) T KOG0452 396 LDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLS 475 (892) T ss_pred HCCCCCCCCCCCCHHHHHCEEEEEECCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCEEECCCC T ss_conf 35766633222485675033899988966674168599998710348999277645668877888647602310540448 Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005 Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896) Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896) T Consensus 476 PGSgvVt~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLA 555 (892) T KOG0452 476 PGSGVVTKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLA 555 (892) T ss_pred CCCCHHHHHHHHCCCHHHHHHCCCEEECCCCCEECCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHCC T ss_conf 99743032354435366798619426533221211688878878987533388489988406877665116641000014 Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776 Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896) Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896) T Consensus 556 SPpLvvaYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~ 635 (892) T KOG0452 556 SPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSK 635 (892) T ss_pred CCHHHHHHHHCCEEECCEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCC T ss_conf 86477664442513501002554318998768875147877999999886002899999999886167114420277663 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 20567433342378876776545543324358558999658857233164565554473788898749886563145653 Q gi|254780451|r 634 TYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTR 713 (896) Q Consensus 634 ~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsR 713 (896) T Consensus 636 Ly~Wd~~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsR 715 (892) T KOG0452 636 LYPWDPKSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSR 715 (892) T ss_pred EECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCC T ss_conf 02158887511078301131237998310101168886067433256487753133788888887669983440220135 Q ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 02357776652036012232125777657722453899787379999989981998899946777867307999886676 Q gi|254780451|r 714 RGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRL 793 (896) Q Consensus 714 RgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~l 793 (896) T Consensus 716 RGND~vMaRGTFANIrlvNkl~~---k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~L 792 (892) T KOG0452 716 RGNDAVMARGTFANIRLVNKLLS---KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFL 792 (892) T ss_pred CCCHHHHHCCCCHHHHHHHHHHC---CCCCCEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCHH T ss_conf 57534531454005588998741---569854756898751175689988755995699932434788743312139612 Q ss_pred CCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH-CCCCCEEEEEEEECCCCEEEEEEEEE Q ss_conf 17089997647898885053552322331789898881989743899726322-58997389999818996799999987 Q gi|254780451|r 794 LGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT-ISPRQESTLEIHYSDGTFKCVPIICC 872 (896) Q Consensus 794 LGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~-l~p~~~v~v~i~~~~g~~~~~~~~~r 872 (896) T Consensus 793 lGvKAViaeS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~~--d~Gk--~F~~~~r 868 (892) T KOG0452 793 LGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVTT--DTGK--VFVCTLR 868 (892) T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCCCCCCEEEEEECCCCCCCCCCEEEEEE--CCCC--EEEEEEE T ss_conf 44699998889888763544420344442489970111766604689867734478986589992--5895--8999998 Q ss_pred ECCHHHHHHHHCCCHHHHHHHHHC Q ss_conf 389999999990983689888729 Q gi|254780451|r 873 IDTLDEINHLKNGGILQAVLRQLS 896 (896) Q Consensus 873 ~dt~~E~~~~~~GGiL~yvlr~la 896 (896) T Consensus 869 FdteVeltyy~~GGiL~y~iRk~~ 892 (892) T KOG0452 869 FDTEVELTYYKNGGILNYMIRKLS 892 (892) T ss_pred CCCCEEEEEEECCCCHHHHHHHCC T ss_conf 045168999716888899786319 |
|
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent; InterPro: IPR012708 This entry represents Fe/S-dependent 2-methylisocitrate dehydratase (AcnD; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1678.09 Aligned_cols=853 Identities=44% Similarity=0.778 Sum_probs=799.2 Q ss_pred CCCEEEECCEEEEEEEHHH-HHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH Q ss_conf 1214432883799876687-865157785445711999999887404866579999999861235545777663645325 Q gi|254780451|r 10 CRSILSVGGIDYVYYSLPK-AEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSR 88 (896) Q Consensus 10 ~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~R 88 (896) T Consensus 4 yrk~l--~~~~~~yfd~r~a~e~~~PG~y~~lPyt~r~laenlv~~~~~~~l~~-~l~q~ie---~--k~~ldfPW~Par 75 (864) T TIGR02333 4 YRKAL--PGTDLDYFDARAAVEAIKPGAYDKLPYTSRVLAENLVRRCDPETLSA-SLKQLIE---R--KRDLDFPWYPAR 75 (864) T ss_pred CCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH-HHHHHHH---H--HHCCCCCCCCHH T ss_conf 33357--85310255678999740887532365167888999874168779999-9999873---1--211688866502 Q ss_pred HHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2200000357999999999999971999999287898139986832110059-988999899988754267899998774 Q gi|254780451|r 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896) Q Consensus 89 v~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g-~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896) T Consensus 76 vvChdilGqtalvdlaGlrdaia~~GGdPa~vnPvv~~qlivdhslave~~G~d~~af~knr~~edrrnedrfhfi~W~~ 155 (864) T TIGR02333 76 VVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVETQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTK 155 (864) T ss_pred EEHHHHHCHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 00012301145566653579998438895200440224456631000110477878887543343100211257789998 Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE Q ss_conf 21488078608876216778986335113103688617983013206887644452012320343489999970775141 Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896) Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896) T Consensus 156 ~af~nv~vi~~GnGimhqinle~msPv~~~~----~GvafPd~~vGtdshtPhvd~lGv~~~GvGGleae~vmlGr~s~m 231 (864) T TIGR02333 156 KAFKNVDVIPAGNGIMHQINLEKMSPVVQVK----NGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMM 231 (864) T ss_pred HHHHHCEEECCCCCEEEEECHHHCCCEEEEC----CCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCHHH T ss_conf 8754200001688424431031417412414----653257530026677763113104466305410010211450010 Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999 Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896) Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896) T Consensus 232 rlP~ivGv~l~G~~~~~itatd~vlalteflr~~~vv~~y~ef~GeGa~~l~~Gdratisnm~Pe~Gata~mf~id~qt~ 311 (864) T TIGR02333 232 RLPDIVGVELTGKRQPGITATDIVLALTEFLRKEKVVSAYLEFFGEGARALTLGDRATISNMTPEYGATAAMFAIDEQTI 311 (864) T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 07523445651655666427889999999876424665556650565101211430011015742001466777667778 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001 Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896) Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896) T Consensus 312 ~yl~ltGr~~~qv~lve~yak~~GlW~d~l--~~a~y~r~l~fdlssv~r~~aGPsnPh~r~~t~~l~a~G~~~~~~--- 386 (864) T TIGR02333 312 DYLKLTGREEEQVKLVETYAKAAGLWADSL--KQAVYERVLEFDLSSVVRNLAGPSNPHARLATSDLAAKGIAKEVE--- 386 (864) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHH--CCHHHHHHEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHH--- T ss_conf 777523885688888877765402105544--000000110110222221016888731123223444310102345--- Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC Q ss_conf 10023210245788888755544575310467654599987788999889864987586730797016189999999858 Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 (896) Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~G 487 (896) T Consensus 387 -------~~~~~~~~G~mPdG~viiaaitsCtntsnPrnv~aa~lla~~an~~Gl~r~PWvk~s~aPGsk~~~lyl~ea~ 459 (864) T TIGR02333 387 -------EREAQEAEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANKLGLKRKPWVKSSLAPGSKVVKLYLEEAG 459 (864) T ss_pred -------HHHHCCCCCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHH T ss_conf -------5320033677886403333202202567606889999998888753774277200025762355566566520 Q ss_pred CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC Q ss_conf 85777750530205532242127776883022101136635878633676666546854331000597899999851612 Q gi|254780451|r 488 LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896) Q Consensus 488 ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896) T Consensus 460 l~~ele~lGfGiv~faCttCnGmsGaldP~iq~e~i~rdlyatavlsGnrnfdGrihPyakqaflasPPlvvaya~aG~~ 539 (864) T TIGR02333 460 LLKELEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 539 (864) T ss_pred HHHHHHHCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 46788751650010112102555321253788987643444322100463567631502443432276266565553211 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22310023554888863200156888578888876415832100012233478712201557877620567433342378 Q gi|254780451|r 568 RKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896) Q Consensus 568 ~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896) T Consensus 540 rfdie~d~lG~d~~Gk~~~l~~~WP~d~eidavv~~~vkP~qf~~~y~~mf~~~~~---~~~~~~PlydWrP~styirrP 616 (864) T TIGR02333 540 RFDIEKDVLGVDADGKEIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLEVD---AQKKVSPLYDWRPMSTYIRRP 616 (864) T ss_pred EEEHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCEECCC T ss_conf 01001000152568865787303887246899998520846899999998853333---033457630247764110178 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCC Q ss_conf 87677654554332435855899965885723316456555447378889874988656314565302357776652036 Q gi|254780451|r 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSN 727 (896) Q Consensus 648 Pff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaN 727 (896) T Consensus 617 PyWeGa---la~~rtl~~mrPla~l~dnittdhlsPsnai~~~saaGeyl~kmG~PeedfnsyathrGdhltaqratfan 693 (864) T TIGR02333 617 PYWEGA---LAGERTLKGMRPLAVLGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFAN 693 (864) T ss_pred CCCCCC---CCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 863320---00134553136411205532213367125777644322578764897112111231144301232333215 Q ss_pred CHHHHHHCCCC-C--CCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCH Q ss_conf 01223212577-7--65772245389978737999998998199889994677786730799988667617089997647 Q gi|254780451|r 728 IRICNYMLGEE-G--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESF 804 (896) Q Consensus 728 irl~N~l~~~~-~--~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SF 804 (896) T Consensus 694 Pkl~nem~~~~~G~~~qGslar~ePeG~~~rmWeaietym~rkqPli~~aGadyGqGssrdWaakGvrlaGveaivaeGf 773 (864) T TIGR02333 694 PKLFNEMVKNDDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGF 773 (864) T ss_pred CHHHHHHHHCCCCCEEECCEEEECCCCCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCEEEHHHHHHHHHH T ss_conf 13566666305883220511455578631046889999870589679994265688764025544602000343334102 Q ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHC Q ss_conf 89888505355232233178989888198974389972632258997389999818996799999987389999999990 Q gi|254780451|r 805 ERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKN 884 (896) Q Consensus 805 eRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~ 884 (896) T Consensus 774 erihrtnlvGmGvlPl~fk~~~~r~~~~ldG~e~~dv~G--~~~P~~~l~~v~~r~nGe~~~v~vtC~ldta~ev~~y~a 851 (864) T TIGR02333 774 ERIHRTNLVGMGVLPLEFKPGTNRKTLGLDGTEVFDVVG--EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEA 851 (864) T ss_pred HHHHHHHEEECCEEECCCCCCCCCCEEECCCCHHHHHHC--CCCCCCEEEEEEEECCCCEEEEEEEEEECCCCEEEEEEC T ss_conf 344322111100000012477663001116402223320--557875079999825887776566875226330355403 Q ss_pred CCHHHHHHHH Q ss_conf 9836898887 Q gi|254780451|r 885 GGILQAVLRQ 894 (896) Q Consensus 885 GGiL~yvlr~ 894 (896) T Consensus 852 GGvlqrfaqd 861 (864) T TIGR02333 852 GGVLQRFAQD 861 (864) T ss_pred CCHHHHHHHH T ss_conf 5257888887 |
2.1.99 from EC), which is part of the 2-methylcitrate (2-MC) cycle that occurs in certain fungi and bacteria. The 2-MC cycle is involved in the degradation of propionyl-CoA via 2-methylcitrate, with AcnD functioning after PrpD and before PrpB. AcnD acts to catalyse the dehydration of 2-methylcitrate and citrate to 2-methyl-cis-aconitate and cis-aconitate, respectively, as well as to catalyse the hydration of cis-aconitate. However, 2-methylisocitrate and isocitrate were not substrates for AcnD, indicating that AcnD only catalyses the first half of the aconitase-like dehydration reactions . The enzyme from the fungus Yarrowia lipolytica (Candida lipolytica) does not act on isocitrate. AcnD is homologous to aconitases A and B. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (IPR004406 from INTERPRO) . Information about related proteins can be found at Protein of the Month: Aconitase .. |
>PRK07229 aconitate hydratase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1568.74 Aligned_cols=645 Identities=31% Similarity=0.497 Sum_probs=565.1 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896) T Consensus 2 ~~Tl~eKIl~~h~~~--~~v~~G~~i~~~~d~v~~~D~Tg~~a~~~~~a~-------G~~~~~~-~~~-v-~~~DH~~~~ 69 (648) T PRK07229 2 PLNLTEKILYAHLVE--GELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDRVKT-ELS-V-QYVDHNLLQ 69 (648) T ss_pred CCCHHHHHHHHHCCC--CCCCCCCEEEEECCEEEEECCCCHHHHHHHHHC-------CCCCCCC-CCE-E-EEECCCCCC T ss_conf 966899999973488--876799879998358998747659999999985-------9997899-884-7-883899876 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEE-EEEEECC Q ss_conf 005998899989998875426789999877421488078608876216778986335113103688617983-0132068 Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTD 215 (896) Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~P-dtlVGtD 215 (896) T Consensus 70 ~---------------~~~n~e~~~~l~~~~~~~-gi~~~~pg~GI~Hqv~~E~--------------~a~PG~~ivGtD 119 (648) T PRK07229 70 A---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLER--------------FAVPGKTLLGSD 119 (648) T ss_pred C---------------CHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEECHHH--------------CCCCCCEEEECC T ss_conf 7---------------613189999999999981-9768789983351672210--------------457985698367 Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC Q ss_conf 87644452012320343489999970775141167289999976778644368899999998410221212799961550 Q gi|254780451|r 216 SHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 (896) Q Consensus 216 SHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi 295 (896) T Consensus 120 SHT~~~galG~la~GvG~~e~~~~m~~~~~~~~vPevv~v~l~G~l~~gvtakDviL~i~~~l~~~G~~~k~vEf~G~gv 199 (648) T PRK07229 120 SHTPTAGGLGMLAIGAGGLDVALAMAGGPYELKMPKVVGVKLTGKLPPWVSAKDVILEVLRRLTVKGGVGKIFEYFGPGV 199 (648) T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 77666662312687057999999971877999788589999971079998889999999998375776656999967740 Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 01787563212000100372037751998999999863999889999998746410236767667886306999980314 Q gi|254780451|r 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV 375 (896) Q Consensus 296 ~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i 375 (896) T Consensus 200 ~~Ls~~~R~Ti~NM~~E~GA~~g~fp~D~~t~~yl~~~gR~~~~~--------------~l~~D~~a~Y~~~i~iDls~v 265 (648) T PRK07229 200 ASLSVTERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV--------------ELAADPDAEYDEVIEIDLSEL 265 (648) T ss_pred CCCCHHHHHHHHHCCHHHCCEEEEECCCHHHHHHHHHCCCCHHCC--------------CCCCCCCCCEEEEEEEEHHHC T ss_conf 338888876676412632651678678743899998729812111--------------034799996148999984323 Q ss_pred CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 30122656656413677730116687664001100232102457888887555445753104676545999877889998 Q gi|254780451|r 376 SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLAR 455 (896) Q Consensus 376 eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAk 455 (896) T Consensus 266 ~P~va~P~~P~~~~~v~e~~~-------------------------------~~id~a~IgSCTN~~~~dl~~aA~il-- 312 (648) T PRK07229 266 EPLIAGPHSPDNVVPVSEVAG-------------------------------IKVDQVLIGSCTNSSYEDLMRAASIL-- 312 (648) T ss_pred CEEEECCCCCCCCEEHHHHCC-------------------------------CEEEEEEEECCCCCCHHHHHHHHHHH-- T ss_conf 045416999554238899379-------------------------------61459999457899839999999987-- Q ss_pred HHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECC Q ss_conf 89864987586730797016189999999858857777505302055322421277768830221011366358786336 Q gi|254780451|r 456 NAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSG 535 (896) Q Consensus 456 kAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~Sg 535 (896) T Consensus 313 ----kg~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~gC~~CiG~~~~~~--------~~~---~~v~s~ 377 (648) T PRK07229 313 ----KGKTVHPKVSFVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQAPA--------TGN---VSLRTF 377 (648) T ss_pred ----HCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHCCEEEECCCCCCCCCCCCCCC--------CCC---EEEECC T ss_conf ----41687888149985785999999998785666886896993871420107299898--------883---688515 Q ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 76666546854331000597899999851612223100235548888632001568885788888764158321000122 Q gi|254780451|r 536 NRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615 (896) Q Consensus 536 NRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~ 615 (896) T Consensus 378 NRNF~gR~g~~~~~~yLaSP~~vaA~AiaG~i-----tdp~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 437 (648) T PRK07229 378 NRNFPGRSGTKNAHVYLASPETAAASALTGVI-----TDPRDLDELPNMDGPKVKLPEPFLVDD---------------A 437 (648) T ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHCCEE-----CCCCCCCCCCCCCCCCCCCCCCCCCCC---------------C T ss_conf 54457776886664487588999998726623-----376123444567776534776532251---------------0 Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHH Q ss_conf 33478712201557877620567433342378876776545543324358558999658857233164565554473788 Q gi|254780451|r 616 DVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAAS 695 (896) Q Consensus 616 ~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~ 695 (896) T Consensus 438 ~~~~~~~~~~~~~~~~~p---------~i~~~p~~~p-------~~~~~~~~vl~~lgD~vTTDhIsPAG~--------~ 493 (648) T PRK07229 438 MIIAPAEDGSGVEVIRGP---------NIKPLPLLDP-------LPDSLEGKVLIKVGDNITTDHIMPAGA--------K 493 (648) T ss_pred CEECCCCCCCCEEEECCC---------CCCCCCCCCC-------CCCCCCCEEEEECCCCCCHHCCCCCCC--------C T ss_conf 021577665632675489---------8777665677-------654446668986079987312887987--------4 Q ss_pred HHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECC Q ss_conf 89874988656314565302357776652036012232125777657722453899787379999989981998899946 Q gi|254780451|r 696 YLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAG 775 (896) Q Consensus 696 yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG 775 (896) T Consensus 494 ~l--------------~~Rgn~~~i~~~~~~~~~--~----------------------~f~~~a~~~~----~~iivaG 531 (648) T PRK07229 494 WL--------------PYRSNIPNISEFVFEGVD--N----------------------TFPERAKEYK----GGIIVGG 531 (648) T ss_pred CC--------------CCCCCHHHHHHHHHCCCC--C----------------------HHHHHHHHCC----CCEEEEC T ss_conf 33--------------556868999766524677--0----------------------6999998609----9799976 Q ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEE Q ss_conf 77786730799988667617089997647898885053552322331789898881989743899726322589973899 Q gi|254780451|r 776 VEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTL 855 (896) Q Consensus 776 ~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v 855 (896) T Consensus 532 ~~YG~GSSRd~AAk~~~lLGvkAVIA~SFeRIhrsNLv~mGvLPL~f~~~~~~~~l~~--~d~~~i~~~~~~~~~~~~~v 609 (648) T PRK07229 532 ENYGQGSSREHAALAPRYLGVKAVIAKSFARIHKANLINFGILPLTFADEADYDKIEE--GDELEIEDLREFLEGGPLTV 609 (648) T ss_pred CCCCCCCHHHHHHHCHHHCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHCCC--CCEEEECCHHHCCCCCCEEE T ss_conf 7678886299998578873868999824688997537424345368779668877599--98899728244288995599 Q ss_pred EEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHHC Q ss_conf 99818996799999987389999999990983689888729 Q gi|254780451|r 856 EIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 (896) Q Consensus 856 ~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~la 896 (896) T Consensus 610 ~~~~~~g~--~~~~~~~~-t~~E~ey~~~GGiL~yv~rk~~ 647 (648) T PRK07229 610 VLNHGKGE--EIEVRHTL-SERQIEILLAGGALNLIKEKQK 647 (648) T ss_pred EEECCCCC--EEEEEEEC-CHHHHHHHHHCCHHHHHHHHHC T ss_conf 99928994--89998618-9999999985889999999753 |
|
>PRK11413 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1507.45 Aligned_cols=708 Identities=20% Similarity=0.253 Sum_probs=593.3 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHH Q ss_conf 65799999998612355457776636453252200000357999999999999971999999287898139986832110 Q gi|254780451|r 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVD 137 (896) Q Consensus 58 ~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd 137 (896) T Consensus 35 ~t~~~~il~~h~~~~~-----~~~l~l~~d~~~~~d~t~~~~~~~~~as-------g~-~~~---~vp~~~~~~h~~~~~ 98 (751) T PRK11413 35 GTIAWSILSSHNTSGN-----MDKLKIKFDSLASHDITFVGIVQTAKAS-------GM-ERF---PLPYVLTNCHNSLCA 98 (751) T ss_pred CCCHHHHHHHHCCCCC-----HHHCCCCCCCHHCCHHHHHHHHHHHHHC-------CC-CCC---CCCEEEECCCHHHHH T ss_conf 7542999997366898-----4530005530012136899999999986-------99-867---675566335116776 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCC Q ss_conf 059988999899988754267899998774214880786088762167789863351131036886179830-1320688 Q gi|254780451|r 138 YSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDS 216 (896) Q Consensus 138 ~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDS 216 (896) T Consensus 99 vgg~-------------iN~ddh~Fl~saa~Ky-G~~f~~Pg~gIiHQ~~lE--------------~~a~pG~~~iGTDS 150 (751) T PRK11413 99 VGGT-------------INGDDHVFGLSAAQRY-GGIFVPPHIAVIHQYMRE--------------MMAGGGKMILGSDS 150 (751) T ss_pred HCCC-------------CCHHHHHHHHHHHHHH-CCEECCCCCCEECHHHHH--------------HCCCCCCEEEECCC T ss_conf 3785-------------6778899999999972-917618998223098786--------------12589976886165 Q ss_pred CCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CEEEEEEECCC Q ss_conf 76444520123203434899999707751411672899999767786443688999999984102212-12799961550 Q gi|254780451|r 217 HTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSGF 295 (896) Q Consensus 217 HT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvv-gk~vEf~G~gi 295 (896) T Consensus 151 HT~-~ggLG~la~GVGG~Ea~~aMlG~P~~l~~P~VIGV~LtG~L~~gvtakDviL~i~~~L~~kG~v~gkiVEf~GpGv 229 (751) T PRK11413 151 HTR-YGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGV 229 (751) T ss_pred CCC-CCCHHHEEECCCHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEECCCEEEEEEEEECCCC T ss_conf 657-7663342781669999999869835720797899999711798977899999999997005715107999978661 Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 01787563212000100372037751998999999863999889999998746410236767667886306999980314 Q gi|254780451|r 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV 375 (896) Q Consensus 296 ~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i 375 (896) T Consensus 230 ~~LS~~dRaTI~NM~~E~GATtsiFP~De~t~~YL~~tgR~e~~~~L--------------~~d~~a~Yd~vieiDLS~l 295 (751) T PRK11413 230 AALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQL--------------NPQPMAYYDGCISVDLSAI 295 (751) T ss_pred CCCCCCCCCCCCCCCHHHCCEEEEECCCHHHHHHHHHCCCHHHHHHH--------------CCCCCCCCCCEEEEECCCC T ss_conf 22670333311012274584677515688999999870983777750--------------4688774240799984661 Q ss_pred CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEE--EEEECCCCCCCHHHHHHHHHH Q ss_conf 301226566564136777301166876640011002321024578888875554457--531046765459998778899 Q gi|254780451|r 376 SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLL 453 (896) Q Consensus 376 eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvI--AaIgSCTNtSnp~~miaAgll 453 (896) T Consensus 296 eP~IAGP~~P~~~~~i~el~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~IgSCTNsSy~d~~~aA~il 375 (751) T PRK11413 296 KPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANAL 375 (751) T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH T ss_conf 35245898813221868766659887665432001245665432334334488840315899605789837699999997 Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863 Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896) Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896) T Consensus 376 ~~k~v~-----~~~v~~sv~PGS~~V~~~L~r~Gll~~L~~~G~~v~~~gCgpCIG~-gd~p~-------~~~---~sv~ 439 (751) T PRK11413 376 RGQSCG-----NDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGA-GDTPI-------NNG---LSIR 439 (751) T ss_pred HCCCCC-----CCCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCC-CCCCC-------CCC---CEEE T ss_conf 154356-----8840248818879999999987888999974988915767355388-88788-------885---1576 Q ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC- Q ss_conf 3676666546854331000597899999851612223100235548888632001568885788888764158321000- Q gi|254780451|r 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKK- 612 (896) Q Consensus 534 SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~- 612 (896) T Consensus 440 s~NRNF~gR~~~~~~~~~laSp~Lv~A~aiAgt~~~~g~l---------~~~~~~d~~~~~~e~~------~~~~~~~~~ 504 (751) T PRK11413 440 HTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYL---------TSASELDCWDNVPEYA------FDVTPYKNR 504 (751) T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHEECCCCCCC---------CCCCCCCCCCCCCCEE------CCCCCCCCC T ss_conf 4055888878996543554681433588763330037767---------9853357899865440------267622142 Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CHHHCCCCCCCCCCC Q ss_conf 1223347871220155787762056743334237887677654554332435855899965885-723316456555447 Q gi|254780451|r 613 KYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI-TTDHISPAGSIPLQS 691 (896) Q Consensus 613 ~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~i-TTDHISPAG~I~~~s 691 (896) T Consensus 505 ~~~~~~~~~~~~~~~~~P~--i~~wp~----------------~~~l~~~i-~~kv~~ki~d~v~TTDHIsPAG~~~~~r 565 (751) T PRK11413 505 VYQGFVKGATQQPLIYGPN--IKDWPE----------------LGALTDNI-VLKVCSKILDEVTTTDELIPSGETSSYR 565 (751) T ss_pred CCCCCCCCCCCCEEECCCC--CCCCCC----------------CCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 3335668864443643898--888877----------------78776303-3433324159865656768998532356 Q ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEE Q ss_conf 37888987498865631456530235777665203601223212577765772245389978737999998998199889 Q gi|254780451|r 692 AAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLV 771 (896) Q Consensus 692 pAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plV 771 (896) T Consensus 566 ~~~~~lse~~~~r~d~~~~g~~~~~~~~~~~~~~g~~~---------~~~~~~~~~----~~~~~~~-~~~~~~~~ig~v 631 (751) T PRK11413 566 SNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVS---------ELTEVFARI----KQIAGQE-HIDPLQTEIGSM 631 (751) T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---------CCCCCCCCC----CCCCCHH-HHHHHHCCCCEE T ss_conf 78657865463656743676522057765541257645---------546655435----5554133-434554266449 Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHH-HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH--CC Q ss_conf 9946777867307999886676170899976478-98885053552322331789898881989743899726322--58 Q gi|254780451|r 772 VFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT--IS 848 (896) Q Consensus 772 ViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFe-RIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~--l~ 848 (896) T Consensus 632 v~a~-k~G~GSSRE~AA~~prlLGvkAVIAkSFa~RIHrSNLi~~GvLPL~F~~~~dy~~-----~D~i~i~gl~~~~~~ 705 (751) T PRK11413 632 VYAV-KPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV-----GDYIYIPGIKAALDN 705 (751) T ss_pred EEEC-CCCCCCHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCC-----CCEEEECCHHHHHHC T ss_conf 9967-7898603999996467434799998120899998736522527578868766889-----987985681235428 Q ss_pred CCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH Q ss_conf 9973899998189967999999873899999999909836898887 Q gi|254780451|r 849 PRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896) Q Consensus 849 p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896) T Consensus 706 ~~~~v~~~i~~~dG~~~ei~l~~~~~t~~E~e~~~aGg~Lny~r~k 751 (751) T PRK11413 706 PGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNR 751 (751) T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCHHHCCCCC T ss_conf 9986899999689968999998348999999999851886600359 |
|
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial; InterPro: IPR006248 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1474.67 Aligned_cols=717 Identities=29% Similarity=0.441 Sum_probs=611.5 Q ss_pred CCCCCCHHHHHHHHHCCCCCCC----C------CCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCC Q ss_conf 8665799999998612355457----7------76636453252200000357999999999999971999999287898 Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGT----V------ESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVP 125 (896) Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~----~------~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp 125 (896) T Consensus 18 ~pLTlaEKiLYSHLddp~~S~~S~d~~Gr~~RG~~yLkL~PDRVamQDA~AQMAlLQFm~~-----------gL~~~~~P 86 (761) T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDISGRDVRGKSYLKLRPDRVAMQDASAQMALLQFMTA-----------GLPQVAVP 86 (761) T ss_pred CCCHHHHHHHHHCCCCHHHCEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-----------CCCCCCCC T ss_conf 9722555556420467202303024565322145454448860001036789999999865-----------88887646 Q ss_pred EEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEE Q ss_conf 13998683211005998899989998875426789999877421488078608876216778986335113103688617 Q gi|254780451|r 126 VDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENI 205 (896) Q Consensus 126 ~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~ 205 (896) T Consensus 87 a~iHCDH-LI~~~~G~~kDL~~~~~----~N~EVfDFL~s~~~kY-gi~FW~PGsGIIHQivLE--------------Ny 146 (761) T TIGR01340 87 ASIHCDH-LIVGQKGGEKDLARAIA----TNKEVFDFLESAAKKY-GIGFWKPGSGIIHQIVLE--------------NY 146 (761) T ss_pred CCCCCCC-EEECCCCCCHHHHHHHH----HHHHHHHHHHHHHHHC-CCCCCCCCCCEEEHHHHH--------------HC T ss_conf 5012451-05547786034788886----4015778899766541-886468888404132123--------------10 Q ss_pred EEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 9830-132068876444520123203434899999707751411672899999767786443688999999984102212 Q gi|254780451|r 206 AYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV 284 (896) Q Consensus 206 a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvv 284 (896) T Consensus 147 a~PGllMlGTDSHtPNaGGL~~~~IGVGGADAVd~l~g~PWELKaPKilGV~LTGkl~gW~~pKDvIlklag~LTV~GGT 226 (761) T TIGR01340 147 AFPGLLMLGTDSHTPNAGGLGAIAIGVGGADAVDALAGLPWELKAPKILGVKLTGKLNGWTSPKDVILKLAGLLTVRGGT 226 (761) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHCCCCHHHCCCCEEEEEEEEEECCCCCHHHHHHHHCCCEEECCCC T ss_conf 24641000456788862213312002673558899718873143880565554101368776224552120411510785 Q ss_pred CEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHC--CCCCCCCC Q ss_conf 12799961550017875632120001003720377519989999998639998--899999987464102--36767667 Q gi|254780451|r 285 SKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSN--SRVDLVEAYTKVQGM--WREDIDYE 360 (896) Q Consensus 285 gk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~--~~v~lve~Y~ka~~l--~~~~~~d~ 360 (896) T Consensus 227 G~IvEYfG~Gv~slSCtGm~TiCNMGAEIGATTS~FPf~~~~~~YLkaT~R~~~~~~A~nfenftkG~~~~~~~~~~aD~ 306 (761) T TIGR01340 227 GYIVEYFGPGVESLSCTGMATICNMGAEIGATTSLFPFNEAMKRYLKATNRAEIAEEAKNFENFTKGVAKYKFELLKADK 306 (761) T ss_pred CEEEEEECCCCCCEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 40898855884741226621232144302000367865578899862217557889988766664223467899875046 Q ss_pred CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 88630699998031430122656656413677730116687664001100232102457888887555445753104676 Q gi|254780451|r 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 (896) Q Consensus 361 ~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTN 440 (896) T Consensus 307 ~a~YD~lIEI~Ls~lEPHvNGPFTPDLs~PiS~~~e~~~-------------~~~wP~----------~~~~GLIGSCTN 363 (761) T TIGR01340 307 GAEYDELIEIDLSKLEPHVNGPFTPDLSTPISKFKEKVK-------------KNGWPE----------KLSAGLIGSCTN 363 (761) T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHCCCC----------EEEEEEEECCCC T ss_conf 888652675111227887687887221432678876565-------------517952----------254423541356 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHH Q ss_conf 54599987788999889864987586730797016189999999858857777505302055322421277768830221 Q gi|254780451|r 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISE 520 (896) Q Consensus 441 tSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~ 520 (896) T Consensus 364 SS-YeDM~R~~si~k~A~~~G~K~~--~~F~vTPGSEqIRATlERDg~~~~f~~~Gg~vLaNACGPCIGQ---W~R~D~- 436 (761) T TIGR01340 364 SS-YEDMSRCASIVKDAEKAGLKPK--IPFFVTPGSEQIRATLERDGILQTFEKFGGVVLANACGPCIGQ---WDRKDV- 436 (761) T ss_pred CC-HHHHHHHHHHHHHHHHCCCCCC--CCCEECCCCCCCEEEEEECCHHHHHHHCCCEEEECCCCCCCCC---CCCCCC- T ss_conf 66-3145789999999994889755--6732468862100011117668998646878973466888776---553146- Q ss_pred HCCCCCEEEEEEECCCCCCCCCC--CCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 01136635878633676666546--8543310005978999998516122231002355488886320015688857888 Q gi|254780451|r 521 VIHQKSLVVAGVLSGNRNFEGRI--SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQ 598 (896) Q Consensus 521 ~i~~~~l~~~sV~SgNRNFeGR~--~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~ 598 (896) T Consensus 437 s~~kg~~N-~I~tSyNRNF~gRND~N~~T-~~Fl~SPelVtAm~~aG~~~FNPlTD~~-~~~dGK~FKl~a--P~GdelP 511 (761) T TIGR01340 437 SVKKGEPN-TILTSYNRNFRGRNDGNPAT-MNFLASPELVTAMSYAGSLKFNPLTDSL-KTPDGKEFKLKA--PKGDELP 511 (761) T ss_pred CCCCCCCC-CEEEECCCCCCCCCCCCHHH-HCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC--CCCCCCC T ss_conf 32578975-14740366766647467323-1001567898898760657457653200-188885004683--5788878 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCC Q ss_conf 887641583210001223347871220155787762056743334237-8876776545543324358558999658857 Q gi|254780451|r 599 SFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRN-PPYFETISKHIPEIVDICGARILCLLGDKIT 677 (896) Q Consensus 599 ~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~-pPff~~~~~~~~~~~~i~~arvL~~lGD~iT 677 (896) T Consensus 512 ~~G-----F~~Gr~~f~~~~~-~kP~~nv~v------av~P~S~RLqLLePF------~~w~g~dl~g~~vL~Kv~GKcT 573 (761) T TIGR01340 512 EKG-----FEAGRDTFQAPPD-SKPDENVEV------AVDPKSDRLQLLEPF------EPWNGKDLKGLRVLIKVEGKCT 573 (761) T ss_pred CCC-----CCCCCCCEECCCC-CCCCCCCEE------EECCCCCHHHHCCCC------CCCCCCCCCCCEEEEEECCCCC T ss_conf 887-----6246651315867-888885337------867885278651777------7788863237757898414237 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCE---EECCCCCEE Q ss_conf 23316456555447378889874988656314565302357776652036012232125777657722---453899787 Q gi|254780451|r 678 TDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYT---IHYPSKEEL 754 (896) Q Consensus 678 TDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T---~~~p~~~~~ 754 (896) T Consensus 574 TDhISaAG---------pWLKYkGHL~NIS~-----------------------N~LigA~N~e~gE~N~~~~~~~G~~~ 621 (761) T TIGR01340 574 TDHISAAG---------PWLKYKGHLDNISN-----------------------NTLIGAVNAETGEVNKAYDLFDGSKG 621 (761) T ss_pred CCCCCCCC---------CCCCCCCCCHHHHH-----------------------HHHHHHCCHHCCCCHHHHHCCCCCCC T ss_conf 46301367---------62123678312222-----------------------33543013000640101102688634 Q ss_pred EHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC Q ss_conf 37999998998199889994677786730799988667617089997647898885053552322331789898881989 Q gi|254780451|r 755 FIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK 834 (896) Q Consensus 755 ~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~ 834 (896) T Consensus 622 ~iP~~a~~yK~~g~~W~vva~~NYGEGSaREHAAL~PR~LGg~~i~~kSFARIHETNLKKQG~lPLTFAn~~DYDk--I~ 699 (761) T TIGR01340 622 DIPELARDYKARGVKWVVVAEHNYGEGSAREHAALEPRHLGGRIIIVKSFARIHETNLKKQGVLPLTFANEADYDK--IQ 699 (761) T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCC--CC T ss_conf 6137999997579846998016578765355640586100745777601001221112104766533577233454--48 Q ss_pred CCEEEEEECHHHCCC-----CCEEEEEEEECC-CCEEEEEEEEEECCHHHHHHHHCCCHHHHH Q ss_conf 743899726322589-----973899998189-967999999873899999999909836898 Q gi|254780451|r 835 GDEIINIRKLKTISP-----RQESTLEIHYSD-GTFKCVPIICCIDTLDEINHLKNGGILQAV 891 (896) Q Consensus 835 G~E~~~i~~~~~l~p-----~~~v~v~i~~~~-g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv 891 (896) T Consensus 700 ~~d~~~~lnl~~l~~kd~~~g~~~~~~v~~k~tg~~~~iK~~Ht~-~~~Qi~ffkaGSAlN~~ 761 (761) T TIGR01340 700 PGDEVELLNLVELLKKDNNNGGEVDLRVTKKNTGKVFEIKLKHTL-SKDQIGFFKAGSALNLL 761 (761) T ss_pred CCCEEEEECHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCC-CHHHHHHHHHHHHHCCC T ss_conf 876164200233454118898647899752899956887411255-76678998754664159 |
2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents mitochondrial aconitase (mAcn), as well as close homologues such as certain bacterial aconitase A (AcnA) enzymes. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle. |
>KOG0453 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1242.44 Aligned_cols=708 Identities=30% Similarity=0.442 Sum_probs=593.7 Q ss_pred CCCCCHHHHHHHHHCCCCCC--CCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCC Q ss_conf 66579999999861235545--7776636453252200000357999999999999971999999287898139986832 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKG--TVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSL 134 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~--~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv 134 (896) T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms~-------Gl--~kv--avPstIhCdhli 126 (778) T KOG0453 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMSS-------GL--KKV--AVPSTIHCDHLI 126 (778) T ss_pred CCHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCEECCCCHHHHHHHHHHHC-------CC--CCC--CCCCEEEECCEE T ss_conf 7305688887622488655422255338876402023354144899999755-------86--424--477457732322 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE Q ss_conf 110059988999899988754267899998774214880786088762167789863351131036886179830-1320 Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896) Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896) T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE--------------nYAfPG~m~ig 186 (778) T KOG0453 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE--------------NYAFPGLMMIG 186 (778) T ss_pred EECCCCCCH-----HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEEEEE--------------CCCCCCCEEEE T ss_conf 101377600-----3456554079999999888754-877658987601422310--------------03577525773 Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615 Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896) Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896) T Consensus 187 TDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~ 266 (778) T KOG0453 187 TDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGP 266 (778) T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCEECCCCEEEEEEEEECCCCCCHHHHHHHHHCEEEECCCCCEEEEEECC T ss_conf 15778888863402104566109899638972213885677887611389887457787550525643766536788568 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803 Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896) Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896) T Consensus 267 Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~-ia~~a~~~~~~-----~l~AD~~a~Ydk~ieIdLs 340 (778) T KOG0453 267 GVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNE-IAREARETLDA-----ILAADKGAHYDKIIEIDLS 340 (778) T ss_pred CCCEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CHHHHHHHHHH-----CCCCCCCCCCCEEEEEEHH T ss_conf 64401224400101153301220565678789999999849531-02456776641-----0468888771028998764 Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899 Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896) Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896) T Consensus 341 tL~P~vnGPfTpdl~~pvskl~e~~~-------------k-----n~wp-----~~i~~gligSCTNSs-yeDm~raa~i 396 (778) T KOG0453 341 TLEPHVNGPFTPDLSTPVSKLGENSE-------------K-----NGWP-----IKIKVGLIGSCTNSS-YEDMSRAADI 396 (778) T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHH-------------H-----CCCC-----EEEEEEEEEEECCCC-HHHHHHHHHH T ss_conf 36645679998554673999867765-------------1-----3875-----056453798615855-7778889999 Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863 Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896) Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896) T Consensus 397 v~~a~~~glk~~--v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGq---w~r~---dvk~GE~n-tivt 467 (778) T KOG0453 397 VKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQ---WDRK---DIKKGEKN-TIVT 467 (778) T ss_pred HHHHHHCCCCCC--CCEEECCCHHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCCC---CCCC---CCCCCCCC-CEEE T ss_conf 999874577878--6157646738765567506628999864998866676772145---5510---04677767-5553 Q ss_pred CCCCCCCCCC--CCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 3676666546--85433100059789999985161222310023554888863200156888578888876415832100 Q gi|254780451|r 534 SGNRNFEGRI--SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611 (896) Q Consensus 534 SgNRNFeGR~--~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~ 611 (896) T Consensus 468 s~NRNFtgRnd~np~t-~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~------------ 531 (778) T KOG0453 468 SYNRNFTGRNDANPAT-HAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK------------ 531 (778) T ss_pred EECCCCCCCCCCCCCH-HHCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC--CCCCCCCC------------ T ss_conf 3245653567898311-0011688999999985336689754201-267754320147--75777750------------ Q ss_pred CCCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCC Q ss_conf 012233478712201557877-620567433342378-876776545543324358558999658857233164565554 Q gi|254780451|r 612 KKYSDVFKGDSSWWNIEVPES-ETYMWDEKSTYVRNP-PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPL 689 (896) Q Consensus 612 ~~y~~i~~g~~~w~~l~~~~~-~~y~w~~~StyI~~p-Pff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~ 689 (896) T Consensus 532 ~g~d---~g~~ty~ap~~~~~~~~v~v~p~s~rlqlLepF------~~w~gkd~edl~ilikv~gkCttDhIsaaG---- 598 (778) T KOG0453 532 KGFD---PGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPF------DKWDGKDLEDLKILIKVKGKCTTDHISAAG---- 598 (778) T ss_pred CCCC---CCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC------CCCCCCCCCCCEEEEEEECCCCCCCCCCCC---- T ss_conf 1368---875652189987776123127863300113788------742455500053789993356765504678---- Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCC---EEECCCCCEEEHHHHHHHHHHC Q ss_conf 4737888987498865631456530235777665203601223212577765772---2453899787379999989981 Q gi|254780451|r 690 QSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGY---TIHYPSKEELFIYDAAMRYKVD 766 (896) Q Consensus 690 ~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~---T~~~p~~~~~~iydaA~~Y~~~ 766 (896) T Consensus 599 -----pwlkY~Ghl~nisn-----------------------n~~igain~En~e~n~~~n~~~ge~~~vp~~~~~yk~~ 650 (778) T KOG0453 599 -----PWLKYRGHLENISN-----------------------NDLIGAINKENGEANCVKNYLTGEFGTVPDTARDYKKH 650 (778) T ss_pred -----CCEECCCHHHHCCC-----------------------CHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC T ss_conf -----61343653540234-----------------------21320022655324433201455447768636667753 Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH Q ss_conf 99889994677786730799988667617089997647898885053552322331789898881989743899726322 Q gi|254780451|r 767 QVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT 846 (896) Q Consensus 767 ~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~ 846 (896) T Consensus 651 g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi--~~~d~~~~~~L~~ 728 (778) T KOG0453 651 GIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKI--RPADKVSIKGLTR 728 (778) T ss_pred CCEEEEECCCCCCCCCCHHHHHHCHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEECCCHHHHHHC--CHHCCCCHHHHHH T ss_conf 86069974554677850455430556429737985246778774054435213650697886434--8110446221454 Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHH Q ss_conf 5899738999981899679999998738999999999098368988872 Q gi|254780451|r 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 (896) Q Consensus 847 l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~l 895 (896) T Consensus 729 ~~~gkp~t~~vt~~dg~~~~~kl~-ht~n~~Qi~~fkaGsaln~~-~e~ 775 (778) T KOG0453 729 RTPGKPLTVVVTKKDGKEVEIKLN-HTGNKLQIEWFKAGSALNVM-KEL 775 (778) T ss_pred HCCCCCEEEEEECCCCCEEEEECC-CCCCHHHHHHHHCCHHHHHH-HHH T ss_conf 268984269997799947888604-43334566764441477777-786 |
|
>TIGR01342 acon_putative aconitate hydratase, putative; InterPro: IPR006250 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1252.94 Aligned_cols=642 Identities=31% Similarity=0.498 Sum_probs=539.8 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE---EECC-C Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399---8683-2 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHS-L 134 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlv---iDHs-v 134 (896) T Consensus 1 T~~~KI~~~HL--V~G~l~PGEEI~I~IDQTL~QD~TGTM~yL~FEAl-------~~------~EV~TEL~~~Y~DH~~~ 65 (658) T TIGR01342 1 TLAEKILDDHL--VEGDLEPGEEIAIKIDQTLSQDATGTMVYLEFEAL-------EV------DEVKTELAVSYIDHNTL 65 (658) T ss_pred CCHHHEHHCCE--ECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEC-------CC------CHHHHEEEEEEECCCHH T ss_conf 90232212001--21557887235357535225676530677764313-------78------50001000000012001 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE Q ss_conf 110059988999899988754267899998774214880786088762167789863351131036886179830-1320 Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896) Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896) T Consensus 66 Q~DF----------------~N~DDH~yL~S~A~~y-G~ylS~PGNGICH~VH~E~--------------FA~PGKTLLG 114 (658) T TIGR01342 66 QFDF----------------KNADDHKYLRSVAKKY-GIYLSKPGNGICHNVHKER--------------FAKPGKTLLG 114 (658) T ss_pred CCCC----------------CCCCHHHHHHHHHHHC-CEEEECCCCCCCCCCCCHH--------------CCCCCCCCCC T ss_conf 0234----------------4452147999865215-7257468796322313020--------------1788772036 Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615 Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896) Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896) T Consensus 115 SDSHTPT~GGlG~LAIGAGG~D~A~AM~G~~yY~~MP~~V~V~L~G~lPEW~TAKD~ILELLRRL~VKGG~GK~lEY~G~ 194 (658) T TIGR01342 115 SDSHTPTAGGLGQLAIGAGGLDVAVAMAGEAYYLKMPKVVNVRLKGKLPEWVTAKDVILELLRRLSVKGGLGKVLEYFGE 194 (658) T ss_pred CCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCC T ss_conf 67788888653304122551687865078823742780887786155885201689999987650002675216752188 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803 Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896) Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896) T Consensus 195 GV~~LSVPER~TITNMG~ELGAT~SIFP~D~~T~~yL~~~~RE~~~V~L--------------~~D~DAEY~~~I~~~LS 260 (658) T TIGR01342 195 GVKELSVPERATITNMGAELGATSSIFPSDDITRDYLAAFDREDDFVDL--------------LADADAEYDDVIVVDLS 260 (658) T ss_pred CCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHC--------------CCCCCCCCCCEEEEECC T ss_conf 7120368863220102421324444578716799999850770024422--------------78898753466788302 Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899 Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896) Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896) T Consensus 261 ~LEPLIA~P~~PDNVVPVRE~~G-------------~~V~------------------QV~~GSCTN~~y~D~~~AAKlL 309 (658) T TIGR01342 261 DLEPLIAEPSSPDNVVPVREVEG-------------IKVD------------------QVVVGSCTNSAYVDLLRAAKLL 309 (658) T ss_pred CCCCCCCCCCCCCCCCCCEEECC-------------EEEE------------------EEEEEECCCCHHHHHHHHHHHH T ss_conf 47852257663687111022057-------------0761------------------3888501462077788776651 Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863 Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896) Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896) T Consensus 310 ------EGR~V~~~~~~~VAPGSKQA~El~~~~G~~~~~l~AG~~~~E~~CG~CIG~-G~~P~~~----------~VS~R 372 (658) T TIGR01342 310 ------EGRRVSKDVVFIVAPGSKQALELLAREGALLEFLKAGVRILEAACGACIGI-GFVPASD----------SVSLR 372 (658) T ss_pred ------CCCEECCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCC----------CEEEE T ss_conf ------486425752799758855789997504468999884045544227851034-3217998----------55641 Q ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCC Q ss_conf 367666654685433100059789999985161222310023554-888863200156-888578888876415832100 Q gi|254780451|r 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGE-DQQGSPVYLRDI-WPKDSEIQSFVNKYVTCDLYK 611 (896) Q Consensus 534 SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~-~~~G~~v~L~Di-wPs~~Ei~~~~~~~v~~~~f~ 611 (896) T Consensus 373 ~FNRNF~GR~G~~D~~VYL~SPE~~~A~AIAGEI-----~DPR~L~~~~G------d~~~~~----------~EM~~~y~ 431 (658) T TIGR01342 373 SFNRNFKGRAGIEDDKVYLASPEVAVAAAIAGEI-----VDPRDLADDLG------DLKAIR----------VEMGEKYS 431 (658) T ss_pred EECCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC-----CCCHHHHHCCC------CEEEEE----------EECCCCCC T ss_conf 1045677888887670674270589898761565-----37355541048------624422----------10687688 Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCC Q ss_conf 01223347871220155787762056743334237887677654554332435855899965885723316456555447 Q gi|254780451|r 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQS 691 (896) Q Consensus 612 ~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~s 691 (896) T Consensus 432 ~Gy~~~~~------~~~~~E-E-----~~~~~~~~GPNI~~~P~~~PL~~~~~G-E~~L~~~DNITTDHI~PA~~----- 493 (658) T TIGR01342 432 YGYDEADI------DILTKE-E-----RIDVDLIKGPNIKSLPVKDPLGEDVRG-EVLLKVEDNITTDHIIPATA----- 493 (658) T ss_pred CCCCCCCC------CCCCCC-C-----CCCCCEECCCCCCCCCCCCCCCCCCCE-EEEEEEECCCCCCCCCCCCC----- T ss_conf 87676667------888854-4-----545330018688648886868885210-18899715765253256641----- Q ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEE Q ss_conf 37888987498865631456530235777665203601223212577765772245389978737999998998199889 Q gi|254780451|r 692 AAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLV 771 (896) Q Consensus 692 pAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plV 771 (896) T Consensus 494 ---~IL~lR--------------SNI~~~-------------------SE--y~~~~~D~~---F~~R~K~~~~kGkaG~ 532 (658) T TIGR01342 494 ---DILKLR--------------SNIEAL-------------------SE--YVLSRVDDE---FVERAKKLDEKGKAGV 532 (658) T ss_pred ---CHHHHH--------------HHHHHH-------------------HH--HHHHHCCHH---HHHHHHHHHHCCCEEE T ss_conf ---011013--------------457887-------------------55--754202735---7899998750587348 Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEEC--HHHCCC Q ss_conf 994677786730799988667617089997647898885053552322331789898881989743899726--322589 Q gi|254780451|r 772 VFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK--LKTISP 849 (896) Q Consensus 772 ViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~--~~~l~p 849 (896) T Consensus 533 ~~~GENYGQGSSREHAAl~P~FLGV~~V~A~SFARIH~ANL~NFG~~PL~~~n~E~Y~~~~-~GD~-~E~~~d~~~~~~~ 610 (658) T TIGR01342 533 LVAGENYGQGSSREHAALAPRFLGVRAVLAKSFARIHKANLVNFGVLPLEIDNKEDYDKIE-LGDD-VEVVDDLIEALKD 610 (658) T ss_pred EECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHC-CCCC-EECHHHHHHHHHC T ss_conf 9735447888644688627512106888877676665430000220002246743446541-7981-3226899899847 Q ss_pred CCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH Q ss_conf 973899998189967999999873899999999909836898887 Q gi|254780451|r 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896) Q Consensus 850 ~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896) T Consensus 611 G~~~-l~~~~~~~--~E~~~T~~~-~~~~~~~L~AGG~L~~~K~~ 651 (658) T TIGR01342 611 GEDI-LVVRKTDD--EEILATLDL-SEVEKRILIAGGKLSLIKNK 651 (658) T ss_pred CCEE-EEEEECCC--CEEEEEECC-CHHHHHHEECCCCHHHHHHH T ss_conf 9748-99973488--436654047-83221210017601112201 |
2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents a small family of proteins homologous and likely functionally equivalent to aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterised. More information about these proteins can be found at Protein of the Month: Aconitase .. |
>cd01586 AcnA_IRP Aconitase A catalytic domain | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=1228.81 Aligned_cols=404 Identities=72% Similarity=1.169 Sum_probs=396.6 Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774 Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896) Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896) T Consensus 1 Rvl~QD~Tg~~a~~dlaamr~~~~~~g~dp~~i~p~vp~~lviDHsv~~d~~~~~~~~~~n~~~e~~rn~Ery~flk~~~ 80 (404) T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 94000055744999999989999971899544488898749978851016778855676636788875489999999999 Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE Q ss_conf 21488078608876216778986335113103688617983013206887644452012320343489999970775141 Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896) Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896) T Consensus 81 ~~f~~~~~~pPG~GI~HQv~lE~~~~~v~~~~~~~~~~a~P~tlVGtDSHT~t~GalG~la~GvGg~da~~~m~g~~~~~ 160 (404) T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404) T ss_pred HHHCCEEEECCCCCEECHHHHHHCCCEEEEECCCCCCEECCCCEEECCCCCCCCCHHHHHEECCCHHHHHHHHHCCEEEE T ss_conf 97487788579997140888764022267521378864579989875335653346677557247999999984588898 Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999 Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896) Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896) T Consensus 161 ~vPevi~v~l~G~L~~gvtaKDviL~i~~~l~~~G~~gk~vEf~G~gi~~LS~~~R~TI~NM~~E~GAt~gifp~D---- 236 (404) T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404) T ss_pred ECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHHHHHCCHHHCCEEEEECCC---- T ss_conf 6686899999714699977889999999985506853599998686231299888666762442006544455677---- Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001 Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896) Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896) T Consensus 237 -------------------------------------~~vieiDLs~leP~va~P~~P~~~v~v~--------------- 264 (404) T cd01586 237 -------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH--------------- 264 (404) T ss_pred -------------------------------------CEEEEEEHHHCCEECCCCCCHHHCCCCC--------------- T ss_conf -------------------------------------7499999687753046898843346356--------------- Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC Q ss_conf 10023210245788888755544575310467654599987788999889864987586730797016189999999858 Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 (896) Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~G 487 (896) T Consensus 265 --------------------~~i~~a~IgSCTN~s~~dl~~aA~lla~~av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~G 324 (404) T cd01586 265 --------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASG 324 (404) T ss_pred --------------------CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC T ss_conf --------------------753067764666888766999999999899976880177730899379799999998777 Q ss_pred CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC Q ss_conf 85777750530205532242127776883022101136635878633676666546854331000597899999851612 Q gi|254780451|r 488 LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896) Q Consensus 488 ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896) T Consensus 325 l~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~v~S~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G~I 404 (404) T cd01586 325 LLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404) T ss_pred HHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC T ss_conf 39999973988858816213186999880565433049847964137488978679999898796798999999806409 |
Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. |
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=1027.86 Aligned_cols=410 Identities=31% Similarity=0.482 Sum_probs=358.2 Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774 Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896) Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896) T Consensus 1 Rv~~~D~Tg~~A~~~~~~~-------G~~----~~~~P~~v~~DH~v~~~~~~~~-----~~~~~~~~n~e~~~flk~~~ 64 (412) T cd01584 1 RVAMQDATAQMALLQFMSS-------GLP----KVAVPSTIHCDHLIEAQVGGEK-----DLKRAKDINKEVYDFLASAG 64 (412) T ss_pred CCEEEECCHHHHHHHHHHC-------CCC----CCCCCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHH T ss_conf 9015756518999999976-------999----8999873880786200236642-----07888776599999999999 Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE Q ss_conf 2148807860887621677898633511310368861798301-320688764445201232034348999997077514 Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896) Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt-lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896) T Consensus 65 ~~~-g~~~~~pg~GI~Hqv~~E--------------~~a~PG~~ivGtDSHT~t~GalG~~a~GvG~~e~~~~m~g~~~~ 129 (412) T cd01584 65 AKY-GIGFWKPGSGIIHQIVLE--------------NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWE 129 (412) T ss_pred HHC-CCEEECCCCEEEEEECCC--------------CCCCCCCEEEECCCCCCCCCHHHHEEEECCHHHHHHHHCCCEEE T ss_conf 980-976889997038247554--------------76579977985135666646466427703899999998198787 Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899 Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896) Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896) T Consensus 130 ~~vPe~i~v~l~G~l~~gV~akDviL~ii~~l~~~g~~~k~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T 209 (412) T cd01584 130 LKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERM 209 (412) T ss_pred EECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHH T ss_conf 12797899999814799977889999999985317743179999785314488877553531664558513343686679 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400 Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896) Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896) T Consensus 210 ~~YL~~~gr~~-~~~~~~~~-~----~~~l~~D~~a~Y~~~ieiDls~ieP~VA~P~~P~~~~pv~~~~~~~~~------ 277 (412) T cd01584 210 KKYLKATGRAE-IADLADEF-K----DDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK------ 277 (412) T ss_pred HHHHHHCCCCH-HHHHHHHH-H----HHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHH------ T ss_conf 99988659727-89999998-8----633578999845699999801147861599896546616887688986------ Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985 Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896) Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896) T Consensus 278 -------~-----~~-----~~~i~~~~IGSCTNgr~~D-l~~AA~ilk~a~~~g~~--~~v~~~v~PgS~~V~~~~~~~ 337 (412) T cd01584 278 -------N-----GW-----PLDLRVGLIGSCTNSSYED-MGRAASIAKQALAHGLK--CKSIFTITPGSEQIRATIERD 337 (412) T ss_pred -------C-----CC-----CCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHHHHC T ss_conf -------2-----88-----6432235761235888457-99999999999856887--661389668988999999988 Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC-CEEECCHHHHHHHHHHC Q ss_conf 88577775053020553224212777688302210113663587863367666654685433-10005978999998516 Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVE-ANYLLSPPLVVAYALAG 565 (896) Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~-~~yLaSP~lVvA~AiaG 565 (896) T Consensus 338 Gl~~~l~~aG~~v~~~gCg~C~G~~~~~~------~~~g~-~~~~vss~NRNF~GR~g~~~~~~~YLaSP~~vaAsAi~G 410 (412) T cd01584 338 GLLQTFRDAGGIVLANACGPCIGQWDRKD------IKKGE-KNTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAG 410 (412) T ss_pred CCHHHHHHCCCEECCCCCHHCCCCCCCCC------CCCCC-CCEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCC T ss_conf 73899997798888882433108298767------78777-766995448897778999998558978999999999632 Q ss_pred CC Q ss_conf 12 Q gi|254780451|r 566 NV 567 (896) Q Consensus 566 ~I 567 (896) T Consensus 411 ~I 412 (412) T cd01584 411 TL 412 (412) T ss_pred CC T ss_conf 09 |
Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. |
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=860.86 Aligned_cols=388 Identities=36% Similarity=0.569 Sum_probs=344.2 Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774 Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896) Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896) T Consensus 1 Rvl~hD~Tgp~a~~~~~~~~~--------~~~v~dp~~v~~v~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389) T cd01351 1 RVMLQDATGPMAMKAFEILAA--------LGKVADPSQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389) T ss_pred CEEEEECCCHHHHHHHHHCCC--------CCCCCCCCCEEEEECCCCCCCC---------------HHHHHHHHHHHHHH T ss_conf 946774653999999997489--------8877898667998688788888---------------66599999999999 Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE Q ss_conf 214880786088762167789863351131036886179830-1320688764445201232034348999997077514 Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896) Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896) T Consensus 58 ~~~-gi~~~~~g~GI~H~v~~E~--------------~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~~ 122 (389) T cd01351 58 ALQ-GIAFYRPGVGIIHQIMVEN--------------LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAW 122 (389) T ss_pred HHC-CCEEECCCCCCCCEECHHC--------------CCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCC T ss_conf 982-9848898996175360301--------------6899987983786766688332379767899999998149362 Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899 Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896) Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896) T Consensus 123 ~~vPeti~v~l~G~l~~gv~~KDviL~i~~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~tl~NMa~E~GA~~gi~~~D~~t 202 (389) T cd01351 123 LKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202 (389) T ss_pred CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH T ss_conf 54897899999833699988999999999997326766279999771122389888654542001047407996586889 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400 Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896) Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896) T Consensus 203 ~~yl~~~~~~~~~~~~~~~-------~~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~----------- 264 (389) T cd01351 203 LKWLEATGRPLLKNLWLAF-------PEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVE----------- 264 (389) T ss_pred HHHHHHCCCCHHHHHHHHH-------HHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHC----------- T ss_conf 9999875997278899998-------9755689998565899998111343678999822244988816----------- Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985 Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896) Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896) T Consensus 265 --------------------~~~Id~v~IGSCTngr~eDl~~AA~il------kg~kv~~~vr~~V~P~S~~v~~~a~~~ 318 (389) T cd01351 265 --------------------GTKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSRE 318 (389) T ss_pred --------------------CCCEEEEEECCCCCCCCHHHHHHHHHH------HCCCCCCCEEEEEECCCHHHHHHHHHC T ss_conf --------------------555589995054689978899999987------357668825899945988999999987 Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC Q ss_conf 88577775053020553224212777688302210113663587863367666654685433100059789999985161 Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896) Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896) T Consensus 319 G~~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G~ 388 (389) T cd01351 319 GYYEILVDSGARILPPGCGPCMGNGARLVA-------DGE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 (389) T ss_pred CCHHHHHHCCCEECCCCCCCCCCCCCCCCC-------CCC---EEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCC T ss_conf 659899976978888835146060998799-------998---8998479898878998978279899999999986543 Q ss_pred C Q ss_conf 2 Q gi|254780451|r 567 V 567 (896) Q Consensus 567 I 567 (896) T Consensus 389 I 389 (389) T cd01351 389 I 389 (389) T ss_pred C T ss_conf 9 |
Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5' |
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=864.84 Aligned_cols=379 Identities=34% Similarity=0.553 Sum_probs=339.9 Q ss_pred CHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 25220000035799999999999997199999928789813998683211005998899989998875426789999877 Q gi|254780451|r 87 SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWG 166 (896) Q Consensus 87 ~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa 166 (896) T Consensus 1 D~~~~hD~T~p~a~~~l~~-------~g~--~~~~~~~~v-~~~DH~~p~~~---------------~~~a~~~~~lr~f 55 (380) T cd01585 1 DQTLTQDATGTMAYLQFEA-------MGV--DRVRTELSV-SYVDHNTLQTD---------------FENADDHRFLQTV 55 (380) T ss_pred CCCEEEECCHHHHHHHHHH-------CCC--CCCCCCCEE-EEECCCCCCCC---------------CCCHHHHHHHHHH T ss_conf 9633400448999999998-------499--852899748-97088998988---------------4388999999999 Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC Q ss_conf 4214880786088762167789863351131036886179830-132068876444520123203434899999707751 Q gi|254780451|r 167 QKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896) Q Consensus 167 ~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896) T Consensus 56 a~~~-gi~~~~~g~GI~Hqv~~E--------------~~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~ 120 (380) T cd01585 56 AARY-GIYFSRPGNGICHQVHLE--------------RFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPY 120 (380) T ss_pred HHHH-CCEECCCCCCEEEEECCC--------------CCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHHCCCEE T ss_conf 9981-980628999768478642--------------5668998798476566878721126878689999999816868 Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989 Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896) Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896) T Consensus 121 w~~vPeti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~~~~iEF~G~~i~~ls~~~R~Tl~NMa~E~GA~~gi~~~De~ 200 (380) T cd01585 121 YIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDER 200 (380) T ss_pred EEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHH T ss_conf 88789789999982379997789999999999744466536999967420228887754565155234552667447389 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640 Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896) Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896) T Consensus 201 t~~yl~~~~~~~~~--------------~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~g--------- 257 (380) T cd01585 201 TREFLAAQGREDDW--------------VELAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------- 257 (380) T ss_pred HHHHHHHHCCHHHH--------------HHCCCCCCCCEEEEEEEEHHHCCEEECCCCCCCCEEECCCCCC--------- T ss_conf 99999872980443--------------1035899997138999986546233269989876668622379--------- Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998 Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896) Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896) T Consensus 258 ----------------------~~Id~vfIGSCTngr~eDl~~aA~iL------kg~kv~~~Vr~~V~P~S~~V~~~a~~ 309 (380) T cd01585 258 ----------------------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLAR 309 (380) T ss_pred ----------------------CCEEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEECCCCCHHHHHHHHH T ss_conf ----------------------61267686532799987899999997------49987887543038986899999998 Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC Q ss_conf 58857777505302055322421277768830221011366358786336766665468543310005978999998516 Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896) Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896) T Consensus 310 ~G~~~~~~~aG~~i~~pgCg~C~G~~~~~~--------~ge---v~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G 378 (380) T cd01585 310 NGALADLLAAGARILESACGPCIGMGQAPP--------TGG---VSVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTG 378 (380) T ss_pred CCCHHHHHHCCCEECCCCCHHHHCCCCCCC--------CCC---EEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCC T ss_conf 788878997697888874554338299899--------998---899730789876789988968977999999999554 Q ss_pred CC Q ss_conf 12 Q gi|254780451|r 566 NV 567 (896) Q Consensus 566 ~I 567 (896) T Consensus 379 ~I 380 (380) T cd01585 379 VI 380 (380) T ss_pred CC T ss_conf 39 |
Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known. |
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=864.37 Aligned_cols=379 Identities=31% Similarity=0.470 Sum_probs=330.8 Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774 Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896) Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896) T Consensus 1 l~~~hD~t~p~a~~~~---~~~g~~~v~dp~kv------~~~~DH~vp~~-----~~~~a~~~~~~r~~a~~-------- 58 (382) T cd01583 1 LHLVHDVTSPQAFEGL---REAGREKVWDPEKI------VAVFDHNVPTP-----DIKAAEQVKTLRKFAKE-------- 58 (382) T ss_pred CCEEEECCHHHHHHHH---HHCCCCCCCCCCCE------EEECCCCCCCC-----CHHHHHHHHHHHHHHHH-------- T ss_conf 9235506279999999---98088656798777------89758898898-----98899999999999998-------- Q ss_pred HHCCCEEEECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC Q ss_conf 214880786088-762167789863351131036886179830-132068876444520123203434899999707751 Q gi|254780451|r 168 KSFKNFRVVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896) Q Consensus 168 ~~f~~~~v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896) T Consensus 59 --~-gi~~~~~g~~GI~H~v~~E-------------~G~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~ 122 (382) T cd01583 59 --F-GINFFDVGRQGICHVILPE-------------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKL 122 (382) T ss_pred --H-CCCEECCCCCCEEEEEHHH-------------CCCCCCCCEEEECCCCCCCCCCCHHEEECCCHHHHHHHHCCCCE T ss_conf --4-9743279997388578200-------------57557995798367676778730313866689999999812926 Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989 Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896) Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896) T Consensus 123 ~~~vPetv~v~l~G~l~~gv~aKDliL~ii~~lg~~g~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~ 202 (382) T cd01583 123 WFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDET 202 (382) T ss_pred EEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHH T ss_conf 73278589999956589998889999999987084766726999957540338988865565046001653567668758 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640 Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896) Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896) T Consensus 203 t~~yl~~r~~~~---------------~~~~~~D~da~Y~~~i~iDls~leP~va~P~~P~n~~~v~~~~~--------- 258 (382) T cd01583 203 TFEYLKGRGKAY---------------WKELKSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG--------- 258 (382) T ss_pred HHHHHHHCCCCC---------------CHHHCCCCCCCCCEEEEEEHHHCCEEECCCCCCCCEEECCCCCC--------- T ss_conf 999998565542---------------11104799985227999877768754328989441558510289--------- Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998 Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896) Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896) T Consensus 259 ----------------------~~Id~~~IGSCTngr~~Dl~~aA~iL------~g~kv~~~Vr~~v~PgS~~V~~~a~~ 310 (382) T cd01583 259 ----------------------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEK 310 (382) T ss_pred ----------------------CCCCEEEECCCCCCCCHHHHHHHHHH------CCCCCCCCEEEEECCCCHHHHHHHHH T ss_conf ----------------------73568996336689987999999986------37887886248861587899999998 Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHH Q ss_conf 5885777750530205532242127-776883022101136635878633676666546854331000597899999851 Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 (896) Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~Aia 564 (896) T Consensus 311 ~Gl~~~l~~aG~~i~~pgCg~C~G~~~g~l~~--------ge---~~vsT~NRNF~GR~G~~~a~~yLaSP~~vaAsAi~ 379 (382) T cd01583 311 EGLIEIFIEAGAEVRPPGCGACLGGHMGVLAP--------GE---RCVSTSNRNFKGRMGSPGARIYLASPATAAASAIT 379 (382) T ss_pred CCCHHHHHHCCCEECCCCCCCCCCCCCCCCCC--------CC---EEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHC T ss_conf 77499999779789588460362809887999--------98---89984088987678999893898899999999846 Q ss_pred CCC Q ss_conf 612 Q gi|254780451|r 565 GNV 567 (896) Q Consensus 565 G~I 567 (896) T Consensus 380 G~I 382 (382) T cd01583 380 GEI 382 (382) T ss_pred CCC T ss_conf 539 |
Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. |
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=786.76 Aligned_cols=359 Identities=30% Similarity=0.476 Sum_probs=311.1 Q ss_pred HHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22000003579999999999999719999992878981399868321100599889998999887542678999987742 Q gi|254780451|r 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQK 168 (896) Q Consensus 89 v~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~ 168 (896) T Consensus 2 ~m~hd~t~p~a-~~~~~~g---~~~v~~p~~------~~~~~DH~~p~~~---------------~~~~~~~~~~~~~a~ 56 (363) T cd01582 2 CMTHDNSWPVA-LKFMSIG---ATKIHNPDQ------IVMTLDHDVQNKS---------------EKNLKKYKNIESFAK 56 (363) T ss_pred CCCCCCCHHHH-HHHHHHC---CCCCCCCCC------EEEEECCCCCCCC---------------HHHHHHHHHHHHHHH T ss_conf 56323768999-9999828---995669887------7897188999997---------------340999999999999 Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE Q ss_conf 148807860887621677898633511310368861798301-3206887644452012320343489999970775141 Q gi|254780451|r 169 SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896) Q Consensus 169 ~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt-lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896) T Consensus 57 ~~-gi~~~~~g~GI~H~v~~E-------------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~ 122 (363) T cd01582 57 KH-GIDFYPAGRGIGHQIMIE-------------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWW 122 (363) T ss_pred HC-CCCEECCCCCEEEEECCC-------------CCCCCCCCEEECCCCCCCCCCHHHHHEECCCHHHHHHHHHCCCEEE T ss_conf 82-997668999758677200-------------3842799779807655576643676336737999999981392632 Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999 Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896) Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896) T Consensus 123 ~vPe~v~V~l~G~l~~gV~~kDliL~i~~~l~~~g~~~~~vEf~G~~v~~Ls~~~R~ti~NMa~E~GA~~gi~~~D~~~- 201 (363) T cd01582 123 QIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTDAKH- 201 (363) T ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHH- T ss_conf 0895899999721799976889999999996216766559999744033178777778977657655366634777422- Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001 Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896) Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896) T Consensus 202 ----------------------------------------~~iDls~leP~va~P~~~~~~~~~~~~~~----------- 230 (363) T cd01582 202 ----------------------------------------LILDLSTLSPYVSGPNSVKVSTPLKELEA----------- 230 (363) T ss_pred ----------------------------------------CCCCHHHCCCEECCCCCCCCCCCHHHHCC----------- T ss_conf ----------------------------------------03778889616159998556883466320----------- Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEECCCHHHHHHHHHC Q ss_conf 1002321024578888875554457531046765459998778899988986498-758673079701618999999985 Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGL-KSKPWVKTSCAPGSQVSYEYLVQA 486 (896) Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Gl-kv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896) T Consensus 231 ------------------~~i~Id~a~IGSCTNgr~eDl~~AA~iL~g~~~~~~~~~v~p~Vr~~v~PgS~~V~~~a~~~ 292 (363) T cd01582 231 ------------------QNIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKN 292 (363) T ss_pred ------------------CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCHHHHHHHHHC T ss_conf ------------------36732479997579999889999999998655403785018981499843848889999987 Q ss_pred CCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC Q ss_conf 885777750530205532242127-7768830221011366358786336766665468543310005978999998516 Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896) Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896) T Consensus 293 Gl~~~f~~aGa~i~~pgCg~C~G~~~g~l~~--------ge---~~isT~NRNF~GR~G~~~a~~yLaSP~~vaAsAi~G 361 (363) T cd01582 293 GDWQTLLEAGATPLPAGCGPCIGLGQGLLEP--------GE---VGISATNRNFKGRMGSTEALAYLASPAVVAASAISG 361 (363) T ss_pred CCHHHHHHCCCEECCCCCHHHHCCCCCCCCC--------CC---EEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCC T ss_conf 6098999879889888015100859987999--------98---899820889876789988818989999999999664 Q ss_pred CC Q ss_conf 12 Q gi|254780451|r 566 NV 567 (896) Q Consensus 566 ~I 567 (896) T Consensus 362 ~I 363 (363) T cd01582 362 KI 363 (363) T ss_pred CC T ss_conf 49 |
Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. |
>pfam00330 Aconitase Aconitase family (aconitate hydratase) | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1029.66 Aligned_cols=463 Identities=35% Similarity=0.505 Sum_probs=416.1 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896) T Consensus 1 Tl~eKI~~~H~~~~~-~~~~~~~i~~~vDr~l~hD~T~p~a~~~l~~~g~~v~~----~~~------~~~~~DH~vp~~~ 69 (464) T pfam00330 1 TLYEKILDAHVDDPA-NERGTPYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRR----VPG------TTITCDHNIPTQD 69 (464) T ss_pred CHHHHHHHHHCCCCC-CCCCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCC----CCC------EEEEECCCCCCCC T ss_conf 977899998558754-57888449997668877645629999999976997638----898------3699597887676 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCC Q ss_conf 59988999899988754267899998774214880786088762167789863351131036886179830-13206887 Q gi|254780451|r 139 SGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSH 217 (896) Q Consensus 139 ~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSH 217 (896) T Consensus 70 ~~~-----~~~~~~~~~~~e~~~~l~~~~k~~gi~~~~~~~~GI~Hqv~~E-------------~g~~~PG~~ivG~DSH 131 (464) T pfam00330 70 GGE-----KDLNIAIERNKEQYDFLEKNVKAFGVGFWGPGSTGIVHQIGLE-------------NGFTLPGLTLVGTDSH 131 (464) T ss_pred CCC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEHHH-------------CCCCCCCCEEEECCCC T ss_conf 444-----4312345778999999999999829945579998668477334-------------0865799579865556 Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC Q ss_conf 64445201232034348999997077514116728999997677864436889999999841022121279996155001 Q gi|254780451|r 218 TTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFES 297 (896) Q Consensus 218 T~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~ 297 (896) T Consensus 132 T~t~GalG~la~GvG~td~a~~l~t~~~~~~vPe~i~v~l~G~l~~gvtaKDliL~ii~~l~~~G~~g~~vEf~G~~i~~ 211 (464) T pfam00330 132 TPTHGGLGALAFGVGGSEAEHVLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDD 211 (464) T ss_pred CCCCCHHHHEEECCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHHH T ss_conf 67657556616716899999998368489863647899887776999876689999999846077650799996535442 Q ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC Q ss_conf 78756321200010037203775199899999986399988999999874641023676766788630699998031430 Q gi|254780451|r 298 MVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSP 377 (896) Q Consensus 298 LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP 377 (896) T Consensus 212 Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~----~D~dA~Y~~~i~iDls~leP 287 (464) T pfam00330 212 LSMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLK----SDKDAQYDKVIEIDLSDIEP 287 (464) T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC----CCCCCEEEEEEEEECCCCEE T ss_conf 57555555654014216647998156667899855578825999999997522342----58877062157881466115 Q ss_pred HHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 12265665641367773011668766400110023210245788888755544575310467654599987788999889 Q gi|254780451|r 378 SVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNA 457 (896) Q Consensus 378 ~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkA 457 (896) T Consensus 288 ~va~P~~P~~~~~v~e~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~l~~~~Id~afIGSCTNgr~~Dl~~AA~iLkg~- 365 (464) T pfam00330 288 HVTGPTTPQDAVPISEVPPDPNNFLDPVVK-SMEKALAYMGLWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKGA- 365 (464) T ss_pred EECCCCCCCCEEEHHHCCCCHHHHCCHHHH-HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH- T ss_conf 625998933124956707553430212455-677777640578885036874899998145799964799999998634- Q ss_pred HHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCC Q ss_conf 86498758673079701618999999985885777750530205532242127776883022101136635878633676 Q gi|254780451|r 458 VRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537 (896) Q Consensus 458 v~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNR 537 (896) T Consensus 366 --~~~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-~---~~~ge---~~vsT~NR 436 (464) T pfam00330 366 --AGKGLKPWVKATVVPGSEQVKATAERDGLDKIFDEAGFEWRANGCSPCIGMNDRPDI-I---KGEKN---TCVSSSNR 436 (464) T ss_pred --CCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHCCCCCCCCCC-C---CCCCC---EEEEEECC T ss_conf --246778873699989989999999988629999975988899775003370998764-3---57887---89982088 Q ss_pred CCCCCCCCCCCCEEECCHHHHHHHHHHC Q ss_conf 6665468543310005978999998516 Q gi|254780451|r 538 NFEGRISPDVEANYLLSPPLVVAYALAG 565 (896) Q Consensus 538 NFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896) T Consensus 437 NF~GR~G~~~~~~yLaSP~~vaAsAi~G 464 (464) T pfam00330 437 NFEGRQGANGRTHWLASPAMVAAAAIAG 464 (464) T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHCC T ss_conf 9887889898868963999999998439 |
|
>PRK12466 isopropylmalate isomerase large subunit; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=995.74 Aligned_cols=458 Identities=26% Similarity=0.349 Sum_probs=393.3 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896) T Consensus 3 ~~Tl~eKI~~~h~~~----~~~~~~~~~~vD~~l~hD~T~p~a~~~l~~~~~~v---------~~p~~~~-~~~DH~vp~ 68 (472) T PRK12466 3 PRTLYDKLWDSHVVA----RLDDGAVLLYIDRHLLHEYTSPQAFAGLRARGRTV---------RRPDLTL-AVVDHVVPT 68 (472) T ss_pred CCCHHHHHHHHHCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCC---------CCCCCCE-EEECCCCCC T ss_conf 624999999984686----56898378991167663364699999999759984---------4799972-840989887 Q ss_pred HCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEE Q ss_conf 005998---8999899988754267899998774214880786088762167789863351131036886179830-132 Q gi|254780451|r 137 DYSGNK---DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCV 212 (896) Q Consensus 137 d~~g~~---~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlV 212 (896) T Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~~a~~~g--------i~~f~~~~~~~GI~H~v~~E-------------~g~~~PG~~iv 127 (472) T PRK12466 69 RPGRDRGITDPGGALQVDYLRENCADHG--------IRLFDVDDPRQGIVHVVAPE-------------LGLTLPGMTIV 127 (472) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCCCEEEEECCC-------------CCCCCCCEEEE T ss_conf 6554455468679999999999999839--------71047899998768376443-------------57566883798 Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 06887644452012320343489999970775141167289999976778644368899999998410221212799961 Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 (896) Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G 292 (896) T Consensus 128 gtDSHT~t~GalGala~GvG~td~~~~m~tg~~~~~vPe~i~v~l~G~l~~gVtaKDliL~ii~~l~~~G~~g~~vEF~G 207 (472) T PRK12466 128 CGDSHTTTYGAFGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAG 207 (472) T ss_pred ECCCCCCCCCCCCEEEECCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 35666556675322574687999999983493786567189999947798998651899999999643773148999987 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC Q ss_conf 55001787563212000100372037751998999999863999889999998746410236767667886306999980 Q gi|254780451|r 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDL 372 (896) Q Consensus 293 ~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDL 372 (896) T Consensus 208 ~gi~~Ls~~~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~~----~~~~~~~~~~~~~~~D~da~Y~~~i~iDl 283 (472) T PRK12466 208 EAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPFAPKG----ALWEAALAYWRTLRSDADAVFDREVEIDA 283 (472) T ss_pred HHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCHHH----HHHHHHHHHHHHCCCCCCCCCCEEEEEEC T ss_conf 35402898775535305502162377755768899998636664257----89999999986346787886566999988 Q ss_pred CCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 31430122656656413677730116687664001100232102457888887555445753104676545999877889 Q gi|254780451|r 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGL 452 (896) Q Consensus 373 s~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgl 452 (896) T Consensus 284 s~leP~Va~P~~P~~~v~v~e~~p~~~~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~Id~a~IGSCTNgr~~Dl~~aA~i 363 (472) T PRK12466 284 ADIAPQVTWGTSPDQALPIDGRVPDPAAEADPARRAALERALDYMGLTPGQPLAGIPIDRVFIGSCTNGRIEDLRAAAAV 363 (472) T ss_pred CCCEEECCCCCCCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH T ss_conf 87612215899986146763357882451475667678876653268899433574551799946789983799999999 Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEE Q ss_conf 99889864987586730797016189999999858857777505302055322421277768830221011366358786 Q gi|254780451|r 453 LARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGV 532 (896) Q Consensus 453 lAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV 532 (896) T Consensus 364 l------kG~kv~~~Vr~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~i~~~gCg~C~G~~~~~~~~-------ge---~~v 427 (472) T PRK12466 364 L------RGRKVAPGVRALVVPGSGAVKRQAEAEGLDRIFIAAGFEWREPGCSMCLAMNGDVLAP-------GE---RCA 427 (472) T ss_pred H------HCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHHHCCCCCCCCC-------CC---EEE T ss_conf 7------3786388877799689899999999877588999769789987643224809887999-------99---899 Q ss_pred ECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 3367666654685433100059789999985161222310023 Q gi|254780451|r 533 LSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896) Q Consensus 533 ~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896) T Consensus 428 st~NRNF~GR~g~~~~-~yLaSP~~vaAsAi~G~i-----tdp 464 (472) T PRK12466 428 STTNRNFEGRQGPGAR-THLMSPAMAAAAAVAGHI-----VDV 464 (472) T ss_pred EEECCCCCCCCCCCCC-EEECCHHHHHHHHHCEEE-----CCH T ss_conf 7027898888997985-897699999999847273-----678 |
|
>PRK05478 isopropylmalate isomerase large subunit; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=959.84 Aligned_cols=454 Identities=26% Similarity=0.342 Sum_probs=379.3 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896) T Consensus 2 ~~Tl~eKI~~~H~v~--~--~~~~~~~l~iD~~~~hd~t~p~a~~~l~~~----g~~v~~p~~------~~~~~DH~vpt 67 (466) T PRK05478 2 AKTLYDKLWDAHVVH--E--LEDGTDLLYIDRHLVHEVTSPQAFEGLRLA----GRKVRRPDK------TFATMDHNVPT 67 (466) T ss_pred CCCHHHHHHHHHCCC--C--CCCCCEEEEEEHHHHHCCCHHHHHHHHHHC----CCCCCCCCC------EEEECCCCCCC T ss_conf 855899999972265--5--689826999440566317689999999985----996368888------79963899988 Q ss_pred HCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-E Q ss_conf 00599--88999899988754267899998774214880786088---762167789863351131036886179830-1 Q gi|254780451|r 137 DYSGN--KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPG---TGICHQINLEYLGQSVWTKNENGENIAYPD-T 210 (896) Q Consensus 137 d~~g~--~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG---~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-t 210 (896) T Consensus 68 ~~~~~~~~~~~~----------~~~~~~l~~~~~~~-gi~~~~~~~~~~GI~H~v~~E-------------~G~~~PG~~ 123 (466) T PRK05478 68 TDINRPIADPVA----------RIQVETLEKNCKEF-GITLFDLGDPRQGIVHVIGPE-------------QGLTLPGMT 123 (466) T ss_pred CCCCCCCCCHHH----------HHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEEECCC-------------CCCCCCCCE T ss_conf 774555689789----------99999999999982-971246899998757787421-------------273689877 Q ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 32068876444520123203434899999707751411672899999767786443688999999984102212127999 Q gi|254780451|r 211 CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEF 290 (896) Q Consensus 211 lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf 290 (896) T Consensus 124 ivg~DSHT~t~GalGala~GvG~te~~~vmat~~~~~~vPe~i~v~l~G~L~~gVtaKDliL~ii~~l~~~G~~gk~vEF 203 (466) T PRK05478 124 IVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKAKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEF 203 (466) T ss_pred EEEECCCCCCCCHHHHHEECCCHHHHHHHHCCCEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 99624576654777887046679999999807837885672899998178899987799999999985646778559999 Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE Q ss_conf 61550017875632120001003720377519989999998639998899999987464102367676678863069999 Q gi|254780451|r 291 FGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 (896) Q Consensus 291 ~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~viei 370 (896) T Consensus 204 ~G~gv~~Ls~~~R~TI~NMa~E~GA~~gifp~D~~T~~YL~--gR~--~~p~~~~~~~a~~~~~~l~~D~~a~Y~~~i~i 279 (466) T PRK05478 204 AGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDETTFEYLK--GRP--FAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTL 279 (466) T ss_pred ECCCCCCCCHHHHHHHHCCCHHHCCEEEEECCCHHHHHHHH--CCC--CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEE T ss_conf 46510214787865564033734867999657787999986--166--67308999999987641346888712169999 Q ss_pred ECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 80314301226566564136777301166876640011002321024578888875554457531046765459998778 Q gi|254780451|r 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGA 450 (896) Q Consensus 371 DLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaA 450 (896) T Consensus 280 Dls~leP~Va~p~~P~~~v~v~~~~p~~~~~~~~~~~~~~~~a~~ym~~~~g~~~~~~~Id~a~IGSCTNgr~~Dl~~AA 359 (466) T PRK05478 280 DAADIAPQVTWGTNPGQVISIDGKVPDPEDEADPVKRASAERALAYMGLKPGQPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466) T ss_pred EHHHCCEEECCCCCHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH T ss_conf 84313011128988443407523478824303634556787765531667895114771017999216899806899999 Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEE Q ss_conf 89998898649875867307970161899999998588577775053020553224212-77768830221011366358 Q gi|254780451|r 451 GLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVV 529 (896) Q Consensus 451 gllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~ 529 (896) T Consensus 360 ~il------kG~kv~~~Vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~GC~~CiG~~~~~l~~--------ge--- 422 (466) T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDRLPP--------GE--- 422 (466) T ss_pred HHH------CCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHCCCCCCCCCCC--------CC--- T ss_conf 997------6986578832999789899999999867599999769688688353024869887999--------98--- Q ss_pred EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 7863367666654685433100059789999985161222310023 Q gi|254780451|r 530 AGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896) Q Consensus 530 ~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896) T Consensus 423 ~~vSt~NRNF~GR~g~~~~-~yLaSP~~vaAsAi~G~I-----tdp 462 (466) T PRK05478 423 RCASTSNRNFEGRQGKGGR-THLVSPAMAAAAAITGHF-----VDV 462 (466) T ss_pred EEEEEECCCCCCCCCCCCC-EEECCHHHHHHHHHCCCC-----CCH T ss_conf 8998748897888898988-787899999999966154-----885 |
|
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=877.76 Aligned_cols=410 Identities=30% Similarity=0.462 Sum_probs=346.8 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896) T Consensus 2 g~Tl~EKIl~~h~~~--~~v~~Gd~v~~~vD~~~~hD~t~p~a~~~~~~~g---~~~v~~p~k------v~~~~DH~vp~ 70 (419) T PRK00402 2 GMTLAEKILAAHAGR--EPVSPGEVVEAKVDLVMAHDITGPLAIKELEELG---ADKVFDPDR------VVLVIDHFTPA 70 (419) T ss_pred CCCHHHHHHHHHHCC--CCCCCCCEEEEECCEEEEEECCHHHHHHHHHHCC---CCCCCCCCC------EEEECCCCCCC T ss_conf 868899999996099--8789998899977899997055899999999819---986788777------88977889979 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEE--EECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEE Q ss_conf 0059988999899988754267899998-7742148807--86088762167789863351131036886179830-132 Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLK-WGQKSFKNFR--VVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCV 212 (896) Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flk-wa~~~f~~~~--v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlV 212 (896) T Consensus 71 ~~~~---------------~a~~~~~~r~fa~~-~-gi~~~~d~~~~GI~Hqv~~E-------------~g~~~PG~~iv 120 (419) T PRK00402 71 KDIK---------------SAEQQKILRDFARE-H-GIPHFFDVGRMGICHALLPE-------------KGLVRPGDVVV 120 (419) T ss_pred CCHH---------------HHHHHHHHHHHHHH-H-CCCCCCCCCCCCEEEEEECC-------------CCCCCCCCEEE T ss_conf 9856---------------79999999999998-4-97603248998688786000-------------27446882798 Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 06887644452012320343489999970775141167289999976778644368899999998410221212799961 Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 (896) Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G 292 (896) T Consensus 121 g~DSHT~t~GalGala~GvG~td~~~~latg~~w~~vPe~v~v~l~G~l~~gv~akDviL~i~~~l~~~g~~~~~vEf~G 200 (419) T PRK00402 121 GADSHTCTYGALGAFATGMGSTDLAAAMATGKTWFRVPETIKVVLNGKLPPGVYAKDVILHLIGQIGVDGATYKAMEFTG 200 (419) T ss_pred ECCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 35888776675523663467799999980292677078578999947489997799999999987385777876999938 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC Q ss_conf 55001787563212000100372037751998999999863999889999998746410236767667886306999980 Q gi|254780451|r 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDL 372 (896) Q Consensus 293 ~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDL 372 (896) T Consensus 201 ~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~---------------~~~~~~D~da~Y~~~~~iDl 265 (419) T PRK00402 201 EAIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAKRD---------------YKPWRSDPDAKYERVIEIDL 265 (419) T ss_pred CCCCCCCHHHHHHHHCCCHHHCCEEEEECCCHHHHHHHHHHCCCC---------------CCCCCCCCCCCEEEEEEEEH T ss_conf 630348988964454021433443466668688999999725365---------------40102799984227989857 Q ss_pred CCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 31430122656656413677730116687664001100232102457888887555445753104676545999877889 Q gi|254780451|r 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGL 452 (896) Q Consensus 373 s~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgl 452 (896) T Consensus 266 s~l~P~va~P~~P~n~~~v~e~~g-------------------------------~~Id~~~IGSCTngr~~Dl~~aA~i 314 (419) T PRK00402 266 SKLEPQVAAPHSPDNVKPVSEVEG-------------------------------TKVDQVFIGSCTNGRLEDLRIAAEI 314 (419) T ss_pred HHCCCEECCCCCCCCEEECHHHCC-------------------------------CCEEEEEEECCCCCCCHHHHHHHHH T ss_conf 876602208989221327556459-------------------------------8343999960678988899999898 Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC-CCCCCHHHHHCCCCCEEEEE Q ss_conf 99889864987586730797016189999999858857777505302055322421277-76883022101136635878 Q gi|254780451|r 453 LARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS-GALKKEISEVIHQKSLVVAG 531 (896) Q Consensus 453 lAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns-G~l~~~i~~~i~~~~l~~~s 531 (896) T Consensus 315 l------kg~~v~~~vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~g~~~~--------ge---~~ 377 (419) T PRK00402 315 L------KGRKVAPGVRLIVIPASQKIYKQALKEGLIEILIEAGAVVSPPTCGPCLGGHMGVLAD--------GE---VC 377 (419) T ss_pred H------CCCCCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHHHCCCCCCCCC--------CC---EE T ss_conf 6------4887788722786178499999999877698999779889588454213809887999--------98---89 Q ss_pred EECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 63367666654685433100059789999985161222310023 Q gi|254780451|r 532 VLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896) Q Consensus 532 V~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896) T Consensus 378 vst~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i-----tdp 416 (419) T PRK00402 378 LSTTNRNFVGRMGSPESEVYLASPAVAAASAVAGRI-----TDP 416 (419) T ss_pred EEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCC-----CCC T ss_conf 985588987668998882797899999999968257-----891 |
|
>TIGR01343 hacA_fam homoaconitate hydratase family protein; InterPro: IPR006251 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=847.82 Aligned_cols=422 Identities=29% Similarity=0.438 Sum_probs=354.7 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896) T Consensus 1 TiaEKILs~~sg~--k~V~aGdli~a~iD~~m~~D~TaPlai~~L~e~---g~~~V~~Peri------~~~~DH~vPa~~ 69 (432) T TIGR01343 1 TIAEKILSKKSGK--KEVYAGDLIVAEIDLAMVHDITAPLAIKALEEY---GIDKVFDPERI------VIVVDHAVPAKT 69 (432) T ss_pred CCHHHHHHHHCCC--CEECCCCEEEEEEEEEEECCCCHHHHHHHHHHH---CCCCCCCCCCE------EEEECCCCCCCC T ss_conf 9111334753688--702487668870204041056048999999983---57677588714------998438899643 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEE-EECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEEC Q ss_conf 5998899989998875426789999-87742148807-86088-762167789863351131036886179830-13206 Q gi|254780451|r 139 SGNKDAVTRNKDLEYQRNEERYRFL-KWGQKSFKNFR-VVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGT 214 (896) Q Consensus 139 ~g~~~a~~~n~~~e~~rN~Ery~Fl-kwa~~~f~~~~-v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGt 214 (896) T Consensus 70 ---ik~------------A~~~k~~~efvkk--~Gi~~F~~~GreGI~HqvL~E-------------~glv~PG~~vvGa 119 (432) T TIGR01343 70 ---IKA------------AEMQKLAREFVKK--KGIKYFFDVGREGICHQVLPE-------------EGLVKPGDLVVGA 119 (432) T ss_pred ---HHH------------HHHHHHHHHHHHH--HCHHHCCCCCCCCCEEEEECC-------------CCEECCCCEEEEC T ss_conf ---789------------9998999999986--160223778885416898326-------------8700678779934 Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 88764445201232034348999997077514116728999997677864436889999999841022121279996155 Q gi|254780451|r 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG 294 (896) Q Consensus 215 DSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~g 294 (896) T Consensus 120 DSHTCTyGA~GAFaTG~GsTD~A~a~A~Gk~W~rVPEs~~v~~~G~L~p~V~aKDviL~~I~~iG~DGAtY~a~Ef~Ge~ 199 (432) T TIGR01343 120 DSHTCTYGALGAFATGVGSTDIAYAIATGKVWFRVPESIKVQLTGKLNPGVTAKDVILEVIGEIGVDGATYKAMEFHGET 199 (432) T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCE T ss_conf 73122345576541374458999999828610215718999988303899650366632226544787520689981732 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCC-CC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE Q ss_conf 0017875632120001003720377519989999998639-99--88999999874641023676766788630699998 Q gi|254780451|r 295 FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSG-RS--NSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371 (896) Q Consensus 295 i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tG-R~--~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiD 371 (896) T Consensus 200 ~~~~~~~~R~TlaNMAiEaGgKtGii~~De~T~~Y~~~~Gv~~~~dedi~~-------~~~~~v~~~DedA~Y~~e~EiD 272 (432) T TIGR01343 200 VKNMDMEERLTLANMAIEAGGKTGIIEPDEKTIEYLKERGVAKESDEDIAK-------LKPFRVYKSDEDAEYAKEVEID 272 (432) T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHCC-------CCCEEEECCCCCCCCCEEEEEE T ss_conf 452664346679889998188314773672799999971787544023405-------7753885188886500489987 Q ss_pred CCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf 03143012265665641367773011668766400110023210245788888755544575310467654599987788 Q gi|254780451|r 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAG 451 (896) Q Consensus 372 Ls~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAg 451 (896) T Consensus 273 ~~~~eP~va~Ph~vdNV~~vse~~G------------------------------~~~vdQvfIGsCTNGRl~DLr~AAk 322 (432) T TIGR01343 273 ASQLEPVVAVPHNVDNVKPVSEVEG------------------------------RIEVDQVFIGSCTNGRLEDLRVAAK 322 (432) T ss_pred EECCCCEECCCCCCCCCCCCCCCCC------------------------------CEEEEEEEEEECCCCCHHHHHHHHH T ss_conf 1046843223777988731355678------------------------------6066058884023774678999999 Q ss_pred HHHHHHHHCCCC-CCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEE Q ss_conf 999889864987-5867307970161899999998588577775053020553224212-77768830221011366358 Q gi|254780451|r 452 LLARNAVRAGLK-SKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVV 529 (896) Q Consensus 452 llAkkAv~~Glk-v~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~ 529 (896) T Consensus 323 iL-kaalkqGr~GV~~~VrliViPAS~~vy~qAL~eGli~~F~~AGa~v~~PgCGpClG~H~GVLA~G--------E--- 390 (432) T TIGR01343 323 IL-KAALKQGRKGVAPDVRLIVIPASKAVYLQALKEGLIEIFVEAGAVVSTPGCGPCLGAHQGVLAPG--------E--- 390 (432) T ss_pred HH-HHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCEEECCCCCCHHHHCCCCCCCCC--------C--- T ss_conf 99-99975367552788439998464689999850036889977792870888410220456642588--------7--- Q ss_pred EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 7863367666654685433100059789999985161222310023 Q gi|254780451|r 530 AGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896) Q Consensus 530 ~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896) T Consensus 391 vCiSTsNRNF~GRMG~~~a~IYLASPa~aAAsAV~G~i-----a~P 431 (432) T TIGR01343 391 VCISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGYI-----ADP 431 (432) T ss_pred EEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCEEE-----ECC T ss_conf 78615577887888885652250475686421110056-----388 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase, certain aconitases and uncharacterised proteins, and is a subgroup of those represented in IPR012095. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterised member is T. thermophilus homoaconitase, an enzyme of a non-aspartate pathway of lysine biosynthesis. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0016836 hydro-lyase activity, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process. |
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit; InterPro: IPR011826 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=828.11 Aligned_cols=418 Identities=29% Similarity=0.450 Sum_probs=351.2 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHH----HCCCCHHHCCCCCCEEEEEECCC Q ss_conf 57999999986123554577766364532522000003579999999999999----71999999287898139986832 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIV----VLGGDPQNINPLVPVDLVIDHSL 134 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~----~~g~dp~~inp~vp~dlviDHsv 134 (896) T Consensus 2 TL~EKILS~kvG~---~V~aGE~V~v~VD~am~hDGt~p~~i---~~l~~~g~rGG~~~v~~p~k------~v~~fDH~~ 69 (431) T TIGR02086 2 TLAEKILSEKVGR---PVEAGEIVEVEVDLAMAHDGTGPLAI---KALRELGERGGMAKVEDPEK------IVIVFDHVV 69 (431) T ss_pred CHHHHHHHHHCCC---CCCCCCEEEEECCEEEEECCCHHHHH---HHHHHHHHCCCCCCCCCCCE------EEEEEECCC T ss_conf 6477888985679---87886579970259999648717899---99999973478676646864------899982688 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-E Q ss_conf 11005998899989998875426789999877421488078-608876216778986335113103688617983013-2 Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV-VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-V 212 (896) Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v-~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-V 212 (896) T Consensus 70 P~~~--v~~A~~Q~~~REF~K------------~--~gI~~f~~~g~GIcHQ~L~E-------------~Gya~PG~vvv 120 (431) T TIGR02086 70 PAPT--VEAAELQKEIREFAK------------R--HGIKVFFDVGEGICHQVLVE-------------KGYAEPGMVVV 120 (431) T ss_pred CCCC--HHHHHHHHHHHHHHH------------H--CCCCEEEECCCEEEEEEEEE-------------CCCCCCCEEEE T ss_conf 9965--677887789998887------------6--68705998798027788653-------------06247761899 Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHH-HHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 06887644452012320343489999-97077514116728999997677864436889999999841022121279996 Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEA-AMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFF 291 (896) Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea-~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~ 291 (896) T Consensus 121 G~DSHT~T~GA~GAFA~GmGATDvA~a~~~G~-~W~~VPe~~~V~~~G~l~~~v~AKDv~L~~~~~lg~~gatY~a~E~~ 199 (431) T TIGR02086 121 GADSHTCTSGALGAFATGMGATDVAIALATGK-TWLKVPESIKVVVEGKLEEGVTAKDVALEIVGELGADGATYMAIEFF 199 (431) T ss_pred ECCCCCCHHHCHHHEEECCCHHHHHHHHHHCC-CEEECCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 52677400000023042578689999998286-13645808999987216986022488989999848787640169870 Q ss_pred ECC-CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE Q ss_conf 155-0017875632120001003720377519989999998639-99889999998746410236767667886306999 Q gi|254780451|r 292 GSG-FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSG-RSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMK 369 (896) Q Consensus 292 G~g-i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tG-R~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vie 369 (896) T Consensus 200 g~~G~e~m~~~~RlTl~NmavE~GAK~g~~~p~e~~~eY~k~~~g~~Dediakl~e-------~r~~~~d~~a~Y~~eie 272 (431) T TIGR02086 200 GLPGIEAMSVDERLTLCNMAVEAGAKAGLVEPDEETLEYLKKRRGEEDEDIAKLKE-------FRILKPDPDAKYEDEIE 272 (431) T ss_pred CCCCCCCCCCCCCEEEECCCCEECCCEEEECCCCCHHHHHHCCCCCCHHHHHHHCC-------CCEEECCCCCCCCEEEE T ss_conf 67783015777631102000000562464358873345653047884246765311-------54110488886121789 Q ss_pred EECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH Q ss_conf 98031430122656656413677730116687664001100232102457888887555445753104676545999877 Q gi|254780451|r 370 LDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIG 449 (896) Q Consensus 370 iDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~mia 449 (896) T Consensus 273 iD~~~LeP~Va~Ph~VDNV~~V~~VeGe-----------k~------------------~iDqVFiGSCTNGR~~Dl~~A 323 (431) T TIGR02086 273 IDLSDLEPLVAVPHSVDNVKPVSDVEGE-----------KT------------------KIDQVFIGSCTNGRLEDLRIA 323 (431) T ss_pred EECCCCCCEEECCCCCCCCEECCEEECC-----------EE------------------EEEEEEECCEECCCHHHHHHH T ss_conf 8636888720048748777351004075-----------55------------------884789702003408999999 Q ss_pred HHHHHHHHHHCCCC-CCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCE Q ss_conf 88999889864987-5867307970161899999998588577775053020553224212-777688302210113663 Q gi|254780451|r 450 AGLLARNAVRAGLK-SKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSL 527 (896) Q Consensus 450 AgllAkkAv~~Glk-v~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l 527 (896) T Consensus 324 aeiL------~g~~GvH~dVR~iV~PAS~~V~~~A~e~G~i~~lv~aGa~i~~PGCGPCLG~HmGVLg~--------gE- 388 (431) T TIGR02086 324 AEIL------KGRRGVHPDVRLIVVPASRKVYEKALEEGIIETLVEAGAIICPPGCGPCLGAHMGVLGD--------GE- 388 (431) T ss_pred HHHH------CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEECC--------CC- T ss_conf 9984------13788576303898201478899998741788887493588072387434331567268--------98- Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 5878633676666546854331000597899999851612223100235 Q gi|254780451|r 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPI 576 (896) Q Consensus 528 ~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dpl 576 (896) T Consensus 389 --v~~ST~NRNF~GRMG~~~a~IYLASP~vAA~SA~~G~i-----T~P~ 430 (431) T TIGR02086 389 --VCVSTTNRNFKGRMGSPDAEIYLASPAVAAASAVEGYI-----TDPR 430 (431) T ss_pred --EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC-----CCCC T ss_conf --89973478888888687662781675898885632211-----1889 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase enzymes, from prokaryotes. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process. |
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=777.37 Aligned_cols=412 Identities=29% Similarity=0.452 Sum_probs=344.2 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHH Q ss_conf 65799999998612355457776636453252200000357999999999999971999999287898139986832110 Q gi|254780451|r 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVD 137 (896) Q Consensus 58 ~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd 137 (896) T Consensus 3 ~Tl~eKI~~~h~~~--~~~~~G~~~~~~iD~~l~HdvTsP~a~---~~lr~~g~-kV~~p~k------~~~~~DH~vPt~ 70 (423) T COG0065 3 KTLYEKILDAHVGK--EEVGAGETVLLYIDLHLVHDVTSPQAF---EGLREAGR-KVRDPEK------TVATFDHNVPTP 70 (423) T ss_pred CCHHHHHHHHHCCC--CCCCCCCCEEEEEEEEEEECCCCHHHH---HHHHHHCC-CCCCCCC------EEEEECCCCCCC T ss_conf 43899999874165--557899837999402545336548999---99998398-1247351------699704779985 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEEC Q ss_conf 05998899989998875426789999877421488-0786088-762167789863351131036886179830-13206 Q gi|254780451|r 138 YSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKN-FRVVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGT 214 (896) Q Consensus 138 ~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~-~~v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGt 214 (896) T Consensus 71 ~---~~~a--~~~~~lr~~~k----------e~-Gi~~~~~~g~~GI~H~v~pE-------------~G~~~PG~~Iv~g 121 (423) T COG0065 71 D---IKAA--EQQKELRENAK----------EF-GIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTIVGG 121 (423) T ss_pred C---HHHH--HHHHHHHHHHH----------HH-CCEEEECCCCCCEEEEEECC-------------CCCCCCCCEEEEC T ss_conf 5---7789--99999999999----------84-99045037888577897122-------------2666898689942 Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 88764445201232034348999997077514116728999997677864436889999999841022121279996155 Q gi|254780451|r 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG 294 (896) Q Consensus 215 DSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~g 294 (896) T Consensus 122 DSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~G~t~~aiEf~Ge~ 201 (423) T COG0065 122 DSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEA 201 (423) T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 66764442357651076689999999819564545614899993425899539999999999856387635899996554 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 00178756321200010037203775199899999986399988999999874641023676766788630699998031 Q gi|254780451|r 295 FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGN 374 (896) Q Consensus 295 i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ 374 (896) T Consensus 202 i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k-------------~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~ 268 (423) T COG0065 202 IRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK-------------EWDGAVAYWKTLKSDEDAVYDKVVELDASD 268 (423) T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHH-------------HHHCCCCCCCEECCCCCCCEEEEEEEECCC T ss_conf 2328922210053554652662202477676899999-------------874122455040379997035899988123 Q ss_pred CCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 43012265665641367773011668766400110023210245788888755544575310467654599987788999 Q gi|254780451|r 375 VSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA 454 (896) Q Consensus 375 ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllA 454 (896) T Consensus 269 leP~Va~p~~p~nv~~v~e~~~~~-----------------------------i~iDqVFIGSCTNgRieDLr~AA~Il- 318 (423) T COG0065 269 LEPQVAWPTNPDNVVPVSEVEPDP-----------------------------IKIDQVFIGSCTNGRIEDLRAAAEIL- 318 (423) T ss_pred CCCEEECCCCCCCCEECCCCCCCC-----------------------------EEEEEEEEECCCCCCHHHHHHHHHHH- T ss_conf 771144797702110644446886-----------------------------15345999566775579999999996- Q ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEE Q ss_conf 88986498758673079701618999999985885777750530205532242127-77688302210113663587863 Q gi|254780451|r 455 RNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVL 533 (896) Q Consensus 455 kkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~ 533 (896) T Consensus 319 -----kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~g--------E---~c~S 382 (423) T COG0065 319 -----KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGPG--------E---RCAS 382 (423) T ss_pred -----CCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC--------C---EEEE T ss_conf -----36766888159996596999999998067999996690884798740205598737999--------7---7853 Q ss_pred CCCCCCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 36766665468-5433100059789999985161222310023 Q gi|254780451|r 534 SGNRNFEGRIS-PDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896) Q Consensus 534 SgNRNFeGR~~-p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896) T Consensus 383 TSNRNF~GRqG~~~a~-~yL~SPA~AAAaAv~G~i-----~dp 419 (423) T COG0065 383 TSNRNFEGRQGSPGAR-TYLASPAMAAAAAVEGEI-----VDP 419 (423) T ss_pred CCCCCCCCCCCCCCCE-EEECCHHHHHHHHHCCEE-----CCH T ss_conf 2688877667999875-884598999998850785-----673 |
|
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=748.66 Aligned_cols=407 Identities=22% Similarity=0.310 Sum_probs=313.3 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCC Q ss_conf 79999999861235545777663645325220000035799999999999997199999928789813998683211005 Q gi|254780451|r 60 VTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS 139 (896) Q Consensus 60 ~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~ 139 (896) T Consensus 1 i~EKIla~~~g--~~~V~~Ge~v~~~vD~~m~hD~t~p~~~~~~~~~----g~~~~~~~~------~v~~~dH~~p~~~- 67 (436) T cd01581 1 LAQKIVGRACG--VKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKEL----ACLGFSADL------VMQSFCHTAAYPK- 67 (436) T ss_pred CCHHHHHHHHC--CCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHH----CCCCCCCCC------EEEECCCCCCCCC- T ss_conf 90899998609--9983699989984788854047548899999980----895558875------6786377888998- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECCCC Q ss_conf 998899989998875426789999-877421488078608876216778986335113103688617983013-206887 Q gi|254780451|r 140 GNKDAVTRNKDLEYQRNEERYRFL-KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSH 217 (896) Q Consensus 140 g~~~a~~~n~~~e~~rN~Ery~Fl-kwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtDSH 217 (896) T Consensus 68 --~~------------~~~~~~~~~~f~~~-~-g~~~~~~g~GIcH~v-l~--------------~~~~PG~~ivG~DSH 116 (436) T cd01581 68 --PV------------DVKTHRTLPDFISN-R-GGVALRPGDGVIHSW-LN--------------RMLLPDTVGTGGDSH 116 (436) T ss_pred --HH------------HHHHHHHHHHHHHH-C-CCCCCCCCCCEEEEE-EC--------------CCCCCCCEEEEECCC T ss_conf --78------------89999999999998-0-986448999636411-01--------------664799369834577 Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC------------CCC Q ss_conf 64445201232034348999997077514116728999997677864436889999999841022------------121 Q gi|254780451|r 218 TTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEG------------VVS 285 (896) Q Consensus 218 T~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~G------------vvg 285 (896) T Consensus 117 T~~~~g~---a~g~G~~~~a~a~atG~~w~~vPeti~v~l~G~l~~gv~aKDvil~i~~~~~~~~~~~~~~~~~~~~f~G 193 (436) T cd01581 117 TRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNG 193 (436) T ss_pred CCCCCCE---EECCCHHHHHHHHHCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCE T ss_conf 8887681---2355489999999617167747978999998647999887789999888875312056411476322232 Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH-HHHHHCCCCHHHHHHHHHHHHHH---------HCCC- Q ss_conf 279996155001787563212000100372037751998999-99986399988999999874641---------0236- Q gi|254780451|r 286 KFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI-DYLRLSGRSNSRVDLVEAYTKVQ---------GMWR- 354 (896) Q Consensus 286 k~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~-~YL~~tGR~~~~v~lve~Y~ka~---------~l~~- 354 (896) T Consensus 194 ~~ie~--~Gv~~Ls~~~R~Ti~NMaiE~GAk~gi~~~D~~T~~~Yl~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (436) T cd01581 194 RILEI--EGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVL-MKIMIANGYDDARTLLRRIIAMEEWLA 270 (436) T ss_pred EEEEE--CCCCCCCHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHC T ss_conf 68996--267777865665110501553662323616828899999852356-677665056525567766567898850 Q ss_pred ---CCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCE Q ss_conf ---767667886306999980314-3012265665641367773011668766400110023210245788888755544 Q gi|254780451|r 355 ---EDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430 (896) Q Consensus 355 ---~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V 430 (896) T Consensus 271 ~~~~~~~D~da~Y~~~i~iDls~l~EP~vA~P~~pdnv~~v~e~~g~-------------------------------~I 319 (436) T cd01581 271 NPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK-------------------------------KI 319 (436) T ss_pred CCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCCCCHHCCCHHHHCCC-------------------------------CC T ss_conf 87642079999753189950787767756899981110342443388-------------------------------54 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC Q ss_conf 57531046765459998778899988986498758673079701618999999985885777750530205532242127 Q gi|254780451|r 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN 510 (896) Q Consensus 431 vIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn 510 (896) T Consensus 320 D~vfIGSCT~-r~~Dl~~AA~iL------kg~k~~~-vr~~V~PgS~~V~~~a~~~Gl~~~f~~AGa~v~~pgCg~CiG~ 391 (436) T cd01581 320 DEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGN 391 (436) T ss_pred CEEEEECCCC-CHHHHHHHHHHH------HCCCCCC-CCEEEECCCHHHHHHHHHCCHHHHHHHCCCEECCCCCHHHHCC T ss_conf 0224412578-826899999998------1677788-6589979979999999985819899966969878761542480 Q ss_pred CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC Q ss_conf 776883022101136635878633676666546854331000597899999851612 Q gi|254780451|r 511 SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896) Q Consensus 511 sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896) T Consensus 392 ~~~~~--------~ge---~~iSTsNRNF~GRmG~~a~-vyLaSP~~vAAsAi~G~I 436 (436) T cd01581 392 QARVA--------DGA---TVFSTSTRNFDNRVGKGAE-VYLGSAELAAVCALLGRI 436 (436) T ss_pred CCCCC--------CCC---EEEEEECCCCCCCCCCCCC-EEECCHHHHHHHHHCCCC T ss_conf 88689--------999---8997228898988999984-897899999999951729 |
Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3. |
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit; InterPro: IPR004430 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=737.16 Aligned_cols=452 Identities=26% Similarity=0.376 Sum_probs=374.3 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896) T Consensus 4 TlyeK~fD~HvV~---~~E-~~~~LLYIdrHLvHEVTSPQAF---eGLr~----~gR~VR~~~~Tf---ATmDHni~T~~ 69 (472) T TIGR00170 4 TLYEKLFDAHVVY---EAE-GETPLLYIDRHLVHEVTSPQAF---EGLRQ----AGRKVRRVDKTF---ATMDHNIPTQS 69 (472) T ss_pred CHHHHHCCCEEEE---CCC-CCCCCEEEECEEEEECCCCHHH---HHHHH----CCCCCCCCCCCE---EEECCCCCCCC T ss_conf 2111213530577---267-8885145406155401670324---79986----778015468703---23126557554 Q ss_pred CCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE- Q ss_conf 5998899989--------9988754267899998774214880786088762167789863351131036886179830- Q gi|254780451|r 139 SGNKDAVTRN--------KDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD- 209 (896) Q Consensus 139 ~g~~~a~~~n--------~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd- 209 (896) T Consensus 70 rknfkslD~~~~~~~a~~Qv~~L~~N~k~f-----Gv~---l~dl~~~~QGIVHv~-------------GPE~GlTLPG~ 128 (472) T TIGR00170 70 RKNFKSLDVNIKDEVAKIQVKELEKNCKEF-----GVK---LFDLSSAEQGIVHVV-------------GPEQGLTLPGM 128 (472) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCE---EECCCCCCCCEEEEE-------------CCCCCCCCCCC T ss_conf 310112001331135789999987557871-----932---105778887469986-------------78888538887 Q ss_pred EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 13206887644452012320343489999970775141167289999976778644368899999998410221212799 Q gi|254780451|r 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289 (896) Q Consensus 210 tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vE 289 (896) T Consensus 129 TiVCGDSHTsTHGAFGaLAFGIGTSEVEHVLaTQTl~Q~r~K~m~i~V~Gk~~~GiTaKD~iLaiIGk~g~agGTG~ViE 208 (472) T TIGR00170 129 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIE 208 (472) T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 58858876302345566651576203233234435642688505899855766888456666654333125887506884 Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE Q ss_conf 96155001787563212000100372037751998999999863999889999998746410236767667886306999 Q gi|254780451|r 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMK 369 (896) Q Consensus 290 f~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vie 369 (896) T Consensus 209 f~GEai~~lsMe~RMt~CNMaIE~GArAGliaPDEtTF~Y~K--~R~~--aPKG~ef~~AVayWKtL~tD~gA~fD~~i~ 284 (472) T TIGR00170 209 FCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYVK--GRPH--APKGKEFDKAVAYWKTLKTDEGAKFDTVIT 284 (472) T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC--CCCC--CCCCCCHHHHHHHHHHCCCCCCCCCCCEEE T ss_conf 010686413702100144577886322276288402466207--6888--888776789999875336988872363688 Q ss_pred EECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH Q ss_conf 98031430122656656413677730116687664001100232102457888887555445753104676545999877 Q gi|254780451|r 370 LDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIG 449 (896) Q Consensus 370 iDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~mia 449 (896) T Consensus 285 l~a~~i~P~vTWGtnPg~vl~v~~~vP~P~~~~dp~~k~~aerAl~YmGL~p~~~l~~ikvd~VFIGSCTNsRieDLR~A 364 (472) T TIGR00170 285 LEAEDISPQVTWGTNPGQVLPVNEEVPDPKSFADPVKKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAA 364 (472) T ss_pred ECCEEECCEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHH T ss_conf 52513155465378998267337888775123784457789999997088988861037750568724556057899999 Q ss_pred HHHHHHHHHHCCCCCCCCCE-EEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEE Q ss_conf 88999889864987586730-79701618999999985885777750530205532242127776883022101136635 Q gi|254780451|r 450 AGLLARNAVRAGLKSKPWVK-TSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLV 528 (896) Q Consensus 450 AgllAkkAv~~Glkv~p~Vk-t~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~ 528 (896) T Consensus 365 A~~------~kG~K~A~~v~~alVVPGSg~VK~QAE~EGLDkIF~eAGfEWR~~GCSmCL~MN~D~l~~-------~E-R 430 (472) T TIGR00170 365 AAV------VKGRKVADNVKLALVVPGSGLVKKQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDVLDE-------GE-R 430 (472) T ss_pred HHH------HCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCC-------CC-C T ss_conf 998------478101543758989578823678873316217888717000146772430577675865-------55-4 Q ss_pred EEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC Q ss_conf 87863367666654685433100059789999985161 Q gi|254780451|r 529 VAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896) Q Consensus 529 ~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896) T Consensus 431 CAS--TSNRNFEGRQG~~~RT-HLvSPAMAAaAai~Gh 465 (472) T TIGR00170 431 CAS--TSNRNFEGRQGRGGRT-HLVSPAMAAAAAIAGH 465 (472) T ss_pred CCC--CCCCCCCCCCCCCCCC-CCCCHHHHHHHHHCCC T ss_conf 214--5677765536888663-5440899989861576 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Members of this entry are 3-isopropylmalate dehydratase, large subunit, or the large subunit domain of single-chain forms. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuC-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex. |
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit; InterPro: IPR011823 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=684.03 Aligned_cols=405 Identities=30% Similarity=0.441 Sum_probs=341.7 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896) T Consensus 2 T~~~KILa~~AG~--~~V~pg~l~~~~~D~~lgND~TtP~Aik~Fk---~~g~~KV~d~~~------~~~V~DHFtP--- 67 (419) T TIGR02083 2 TLAEKILADKAGL--EEVEPGELILAKLDLVLGNDVTTPLAIKAFK---EIGVKKVFDKDK------VALVLDHFTP--- 67 (419) T ss_pred CHHHHHHHHHCCC--CCCCCCCEEEEECCEEEECCCCCHHHHHHHH---HCCCEECCCCCC------EEEEECCCCC--- T ss_conf 4245678644251--4457565776512410206665157999898---606500104661------7897157898--- Q ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE Q ss_conf 59988---9998999887542678999987742148807860887-62167789863351131036886179830-1320 Q gi|254780451|r 139 SGNKD---AVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT-GICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896) Q Consensus 139 ~g~~~---a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~-GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896) T Consensus 68 --NKDIK~A~~~k~~R~FA~~~~I~~ffe--------~-----G~~G~EH~L-------------lPE~G~v~~GdliiG 119 (419) T TIGR02083 68 --NKDIKAAEQCKMIREFAKEQGIEKFFE--------I-----GNMGVEHAL-------------LPEKGLVLPGDLIIG 119 (419) T ss_pred --CHHHHHHHHHHHHHHHHHHCCCHHHHC--------C-----CCCCEEEEE-------------CCCCCCEEECCEEEE T ss_conf --723567898899887665314223311--------5-----762135774-------------377773132667882 Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615 Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896) Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896) T Consensus 120 ADSHTCTYGALGaF~TGVGSTD~Av~~~~G~aWF~VP~~IK~~l~G~~~~~V~~KD~iL~~Ig~iGVdGA~YK~~Ef~G~ 199 (419) T TIGR02083 120 ADSHTCTYGALGAFATGVGSTDLAVGMATGKAWFKVPEAIKFVLKGKLKPWVTGKDLILHIIGKIGVDGALYKSMEFSGE 199 (419) T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 67652101200000046552777877651520463471689887146200022136777768773457310245664160 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803 Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896) Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896) T Consensus 200 g~~~ls~d~R~ti~NMAIEAGaK~Gi~~vD~~TI~Y~k--gR~~~~~~-------------~y~~D~DA~Y~~~~e~Dls 264 (419) T TIGR02083 200 GLKELSMDDRLTIANMAIEAGAKTGIFEVDEKTIEYVK--GRAKRELK-------------IYKADEDAKYERVIEIDLS 264 (419) T ss_pred HHEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHC--CCCHHHHH-------------CCCCCCCCCEEEEEEEEHH T ss_conf 02003105520031345540666687562202321001--45401332-------------1477666414456552330 Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899 Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896) Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896) T Consensus 265 ~~~p~VAfPhLP~Nt~~~~~~~k~-----------~i------------------kiDQvVIGSCTNGRleDlr~AA~iL 315 (419) T TIGR02083 265 ELEPQVAFPHLPENTKEIDEAGKE-----------EI------------------KIDQVVIGSCTNGRLEDLRLAAEIL 315 (419) T ss_pred HCCCCCCCCCCCCCCCCHHHHHHH-----------EE------------------EEEEEEECCCCCCCHHHHHHHHHHH T ss_conf 148610356685323325533111-----------12------------------2104898146676078999999985 Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEEEEE Q ss_conf 98898649875867307970161899999998588577775053020553224212-77768830221011366358786 Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGV 532 (896) Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~~sV 532 (896) T Consensus 316 ------~g~~v~~~~R~Ii~P~~~~vY~~a~~~Gl~~~Fi~AG~~vstPTCGPCLGGHMGiLA~--------gE---~a~ 378 (419) T TIGR02083 316 ------KGKKVAKDVRLIIIPGSQNVYLEALKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILAE--------GE---RAV 378 (419) T ss_pred ------CCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHCCC--------CC---EEE T ss_conf ------4871357620899639817999998520688788678666676888767630210107--------87---467 Q ss_pred ECCCCCCCCCC-CCCCCCEEECCHHHHHHHHHHCCC Q ss_conf 33676666546-854331000597899999851612 Q gi|254780451|r 533 LSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 (896) Q Consensus 533 ~SgNRNFeGR~-~p~~~~~yLaSP~lVvA~AiaG~I 567 (896) T Consensus 379 STTNRNFVGRMGH~~-S~VyLaSP~VAAASAi~G~i 413 (419) T TIGR02083 379 STTNRNFVGRMGHPK-SEVYLASPAVAAASAIKGKI 413 (419) T ss_pred EECCCCCCCCCCCCC-CEEEECCHHHHHHHHHCCCC T ss_conf 413766301457876-40674375688787524402 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC) from prokaryotes. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process. |
>KOG0454 consensus | Back alignment and domain information |
---|
Probab=99.88 E-value=1.7e-23 Score=190.75 Aligned_cols=421 Identities=19% Similarity=0.141 Sum_probs=266.4 Q ss_pred CCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHEECCCCHHHHH--HHHHHHHHHHHCCCCHHHCCCCCCEEEEEEC Q ss_conf 8665799999998612355457-776636453252200000357999--9999999999719999992878981399868 Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGT-VESEVSYRFSRVLMQDFTGVPAVV--DLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132 (896) Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~-~~~ei~f~p~Rv~~qD~Tg~pa~v--dlaamR~~~~~~g~dp~~inp~vp~dlviDH 132 (896) T Consensus 65 dp~~vtd~i~a~~~e---rsL~ymGl~-pnt~v~s~~~dkVfigsctn~riedlr~aAa--Vv~g~Ki------a~n~k~ 132 (502) T KOG0454 65 DPMTVTDKILARASE---RSLVYMGLN-PNTNVDSLMTDKVFIGSCTNIRIEDLREAAA--VVDGEKI------AVNPKH 132 (502) T ss_pred CCCCCCHHHHHHHHH---HCEEECCCC-CCCCCCEEEECCEECCCCCCCCHHHHHHHHH--CCCCCEE------EECCCC T ss_conf 974213688875533---110202678-8865204662334415555420887765441--2054045------753651 Q ss_pred CCHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE Q ss_conf 32110059988--9998999887542678999987742148807860887621677898633511310368861798301 Q gi|254780451|r 133 SLIVDYSGNKD--AVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT 210 (896) Q Consensus 133 sv~vd~~g~~~--a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt 210 (896) T Consensus 133 am~vpgsglvkk~aeaegld~if--~-eag--F~wreagc-s~clgmnpd~l~~y------ercastsnRnfEg------ 194 (502) T KOG0454 133 AMFVPGSGLVKKVAEAEGLDRIF--N-EAG--FYWREAGC-SFCLGMNPDGLCHY------ERCASTSNRNFEG------ 194 (502) T ss_pred EEEECCCHHHHHHHHHHHHHHHH--H-HHC--EEHHHCCC-CCCCCCCCHHCCHH------HHHHHCCCCCCCC------ T ss_conf 38806831667688887667887--7-613--20132266-41136880001378------8754236878610------ Q ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 32068876444520123203434899999707751411672899999767786443688999999984102212127999 Q gi|254780451|r 211 CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEF 290 (896) Q Consensus 211 lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf 290 (896) T Consensus 195 rqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~ 274 (502) T KOG0454 195 RQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEF 274 (502) T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCEECCCC T ss_conf 01655432222056775255465324634455642124799835872798865333444301110122222431002557 Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE Q ss_conf 61550017875632120001003720377519989999998639998899999987464102367676678863069999 Q gi|254780451|r 291 FGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 (896) Q Consensus 291 ~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~viei 370 (896) T Consensus 275 ~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~----~f~~--------~~~dg--~~k~~~~dFv~ 339 (502) T KOG0454 275 SSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILS----CFYE--------VALDG--LPKSFVTDFVL 339 (502) T ss_pred CCCCC-CCCCCCEEEEEHHHHHHCCCCCCCCHHHHCCCCCCHHHHH----HHHH--------HEECC--CCHHHCCCEEC T ss_conf 88644-3357430011001453077676357555201555366553----2122--------10247--82331223221 Q ss_pred ECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 80314301226566564136777301166876640011002321024578888875554457531046765459998778 Q gi|254780451|r 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGA 450 (896) Q Consensus 371 DLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaA 450 (896) T Consensus 340 ~vE~~~~~siii~~-DNF-------------------------------GCGSSREHAPv~L~~~GakaivA~Sya~I-- 385 (502) T KOG0454 340 PVEPLRKYSIIIGG-DNF-------------------------------GCGSSREHAPVCLGAAGAKAIVAPSYARI-- 385 (502) T ss_pred CCCCCCEEEEEECC-CCC-------------------------------CCCCCCCCCCCHHHHCCCCEECCHHHHHH-- T ss_conf 46556436799645-775-------------------------------55554555730232212314116038999-- Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHH-----HHHHCC---CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHC Q ss_conf 8999889864987586730797016189999-----999858---85777750530205532242127776883022101 Q gi|254780451|r 451 GLLARNAVRAGLKSKPWVKTSCAPGSQVSYE-----YLVQAG---LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVI 522 (896) Q Consensus 451 gllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~-----~L~~~G---ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i 522 (896) T Consensus 386 --FfrN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~--ad-~I~~~~ 458 (502) T KOG0454 386 --FFRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVID--AD-GIFAYA 458 (502) T ss_pred --HHHHHHHCCCCCCC--CCEEEECCCCEECCEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCC--CH-HHHHHH T ss_conf --99767752874689--850465100022012357713577650466505643230475545476557--03-787763 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC Q ss_conf 13663587863367666654685433100059789999985161 Q gi|254780451|r 523 HQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896) Q Consensus 523 ~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896) T Consensus 459 ~ke----~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502) T KOG0454 459 RKE----GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502) T ss_pred CCC----CCCCHHHHCCCCCCCCCCCCEEECCCCCHHHHHHCCC T ss_conf 311----3502455508433673335357705563123431278 |
|
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=591.91 Aligned_cols=171 Identities=62% Similarity=1.016 Sum_probs=168.1 Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389 Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896) Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896) T Consensus 1 ilGDsiTTDHISPAG~I~~~spAg~yL~~~gv~~~dfNsygsRRgNhevM~RgtFaNirl~N~~~--~~~~gg~t~~~p~ 78 (171) T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLV--PGTEGGTTHHPPT 78 (171) T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCHHHHCCC--CCCCCCEEEECCC T ss_conf 98887761355878778889836899998399833314510013578999877435740321047--7887850887799 Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888 Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896) Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896) T Consensus 79 g~~~~i~daA~~Y~~~~~pliivag~~yG~GSSRd~Aa~~~~~lGv~aVia~Sf~rIh~~NLv~mGvlPL~F~~g~~~~~ 158 (171) T cd01580 79 GEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADS 158 (171) T ss_pred CCEECHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCCCHHH T ss_conf 82640999999999819975998214225666188899879980987999726999999751225325677569999867 Q ss_pred HCCCCCEEEEEEC Q ss_conf 1989743899726 Q gi|254780451|r 831 LNIKGDEIINIRK 843 (896) Q Consensus 831 L~l~G~E~~~i~~ 843 (896) T Consensus 159 L~L~G~E~~~I~G 171 (171) T cd01580 159 LGLTGEETYDIIG 171 (171) T ss_pred CCCCCCEEEEEEC T ss_conf 0888754788649 |
This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. |
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=392.68 Aligned_cols=149 Identities=34% Similarity=0.480 Sum_probs=129.9 Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389 Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896) Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896) T Consensus 1 Kv~~k~TTDHISPAG---------p~lkyRg~~~--------------~is~~~~--~~~~n~~----~~~~~~~~~~~~ 51 (149) T cd01578 1 KAKGKCTTDHISAAG---------PWLKYRGHLD--------------NISNNLL--IGAINAE----NGKANSVKNQVT 51 (149) T ss_pred CCCCCCCCCCCCCCC---------CCHHCCCCHH--------------HHHHCCC--CCCEECC----CCCCCCEECCCC T ss_conf 999976501658787---------2121156478--------------8860771--0212000----224575124889 Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888 Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896) Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896) T Consensus 52 g~~~~i~daA~~y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rIh~~Nl~~~Gilpl~f~~~~d~d~ 131 (149) T cd01578 52 GEYGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDK 131 (149) T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHC T ss_conf 96756899999999849977998255235686176799999971967999725999999741434643588658266640 Q ss_pred HCCCCCEEEEEECHHHCCCC Q ss_conf 19897438997263225899 Q gi|254780451|r 831 LNIKGDEIINIRKLKTISPR 850 (896) Q Consensus 831 L~l~G~E~~~i~~~~~l~p~ 850 (896) T Consensus 132 --i~~~d~i~i~gl~~L~PG 149 (149) T cd01578 132 --IHPDDKVDILGLTDFAPG 149 (149) T ss_pred --CCCCCEEEEECHHHCCCC T ss_conf --799987986483314898 |
Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. |
>pfam00694 Aconitase_C Aconitase C-terminal domain | Back alignment and domain information |
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Probab=100.00 E-value=1.7e-34 Score=271.15 Aligned_cols=129 Identities=40% Similarity=0.602 Sum_probs=124.7 Q ss_pred HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEEC Q ss_conf 88987498865631456530235777665203601223212577765772245389978737999998998199889994 Q gi|254780451|r 695 SYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFA 774 (896) Q Consensus 695 ~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViA 774 (896) T Consensus 3 ~f~~~~G~a~~~~~~nidtd~iip~~~l~~~~~~glg~~lf--~~~r~~~~~~~~~~~~~~f~ln~~~yk~~~~~~ilva 80 (131) T pfam00694 3 KFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILF--DGWRANKTTHLPTGENPDFVDAAERYKQHGAPILVIG 80 (131) T ss_pred CCCHHCCEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 81520485014466656763413889847766777999835--7553676556889978885551699987599879982 Q ss_pred CCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC Q ss_conf 677786730799988667617089997647898885053552322331789 Q gi|254780451|r 775 GVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896) Q Consensus 775 G~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896) T Consensus 81 g~nfG~GSSREhA~~al~~~Gi~~via~Sf~~If~~N~~~~GlLPi~lp~g 131 (131) T pfam00694 81 GKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNLIKNGLLPLTFPNG 131 (131) T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCEEEEEECCC T ss_conf 476677754899999999839959998139999998888678345751899 |
Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. |
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain | Back alignment and domain information |
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Probab=99.97 E-value=1.9e-31 Score=248.84 Aligned_cols=120 Identities=40% Similarity=0.673 Sum_probs=94.1 Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389 Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896) Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896) T Consensus 1 k~GDnIdTD~IiPa~~--------~~~~~~--------------~~~~~~~~~~~~~~~-------------------p- 38 (121) T cd01579 1 KVGDNITTDHIMPAGA--------KVLPLR--------------SNIPAISEFVFHRVD-------------------P- 38 (121) T ss_pred CCCCCCCHHHCCCCCC--------CCCCCC--------------CCHHHHHHHHHHCCC-------------------H- T ss_conf 9999667554268997--------724516--------------998999743251488-------------------3- Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888 Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896) Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896) T Consensus 39 -------~f~~~~-~~~~~~IiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~in~Gllpl~~~~~~~~~~ 110 (121) T cd01579 39 -------TFAERA-KAAGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR 110 (121) T ss_pred -------HHHHHC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCHHHHHH T ss_conf -------477643-458981999667567897289999999983945999758999999878877862088648767887 Q ss_pred HCCCCCEEEEEE Q ss_conf 198974389972 Q gi|254780451|r 831 LNIKGDEIINIR 842 (896) Q Consensus 831 L~l~G~E~~~i~ 842 (896) T Consensus 111 i~-~GD~-levD 120 (121) T cd01579 111 FE-QGDQ-LELP 120 (121) T ss_pred HC-CCCE-EEEC T ss_conf 46-9998-9840 |
Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known. |
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain | Back alignment and domain information |
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Probab=99.81 E-value=2e-20 Score=168.37 Aligned_cols=99 Identities=25% Similarity=0.372 Sum_probs=74.2 Q ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCC Q ss_conf 58857233164565554473788898749886563145653023577766520360122321257776577224538997 Q gi|254780451|r 673 GDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 (896) Q Consensus 673 GD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~ 752 (896) T Consensus 3 ~DNIDTD~IiP~----------ryl~~~~~~~~-------------~~~~~~~~~~d--p~f------------------ 39 (129) T cd01674 3 ADNLNTDGIYPG----------KYTYQDDITPE-------------KMAEVCMENYD--SEF------------------ 39 (129) T ss_pred CHHCCHHHCCCH----------HHCCCCCCCHH-------------HHHHHHCCCCC--CCC------------------ T ss_conf 234666325155----------54587789877-------------87344321369--753------------------ Q ss_pred EEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCC Q ss_conf 873799999899819988999467778673079998866761708999764789888505355232233178 Q gi|254780451|r 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGK 824 (896) Q Consensus 753 ~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~ 824 (896) T Consensus 40 -------~~~~k~---g~ILVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~iNnGLlpI~lP~ 101 (129) T cd01674 40 -------STKTKQ---GDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129) T ss_pred -------CCCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEECHH T ss_conf -------333678---88899668657673488999999984997999852999999777871888687649 |
This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. |
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit; InterPro: IPR004431 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
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Probab=97.84 E-value=6.2e-06 Score=62.44 Aligned_cols=119 Identities=22% Similarity=0.402 Sum_probs=76.0 Q ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCC Q ss_conf 58857233164565554473788898749886563145653023577766520360122321257776577224538997 Q gi|254780451|r 673 GDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 (896) Q Consensus 673 GD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~ 752 (896) T Consensus 17 ~~~~d~d~~~p~----------~~l~~--~~~~g~-------------g~~~~~~w~~~~d~~g-~~p~p~~~l~~p~~~ 70 (194) T TIGR00171 17 AANVDTDAIIPK----------QFLKR--ITRTGF-------------GKHLFYDWRFLKDDEG-KEPNPDFVLNFPPYQ 70 (194) T ss_pred CCCCCCHHHHHH----------HHHHH--HHHCCC-------------CCHHHHHHHHHCCCCC-CCCCCCEEECCCCCC T ss_conf 122540010027----------88877--764022-------------0011111111001257-777763464144435 Q ss_pred EEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHH Q ss_conf 8737999998998199889994677786730799988667617089997647898885053552322331789898881 Q gi|254780451|r 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNL 831 (896) Q Consensus 753 ~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L 831 (896) T Consensus 71 --------------g~~~l~~~g~~~gcg~~~~~~pw~l~d~g~~~~~~p~~~d~~~~~~~~~~~lp~~~~~~~~~~~~ 135 (194) T TIGR00171 71 --------------GASILLAGGENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLPEDEVEELF 135 (194) T ss_pred --------------CCEEEEECCCCCCCCCCCCCCCCEECCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHH T ss_conf --------------61478862763456766444661000136246651311123312322345110002677888776 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents a region of the small subunit. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuD-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex. |
>TIGR00139 h_aconitase homoaconitase; InterPro: IPR004418 Homoaconitase (cis-homoaconitase; 4 | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=372.54 Aligned_cols=610 Identities=25% Similarity=0.347 Sum_probs=414.9 Q ss_pred CCCHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH Q ss_conf 57999999986123554--5777663645325220000035799999999999997199999928789813998683211 Q gi|254780451|r 59 TVTKEQIHAFVKWLDNK--GTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896) Q Consensus 59 ~~~~~~~~~~~~w~~~~--~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896) T Consensus 3 ~~~~~~~~~~~~~~p~g~~~~~gd~~~~~p~~c~~~d~~w-p~~~~~~~~---------g~~~~~~p~~~~~~~d~d~~~ 72 (712) T TIGR00139 3 NLTEKIVQKYAVGLPEGKFVHSGDYVTIKPHHCLTHDNSW-PCALKFLGL---------GATKLHNPDQIVTTLDHDVQN 72 (712) T ss_pred CHHHHHHHHHHCCCCCCCEEECCCEEEECCHHHHCCCCCC-CEEEEEECC---------CCHHCCCCCHHEEECCHHHCC T ss_conf 2355677654126765633315740341321210256655-300000002---------401115720200000000102 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECC Q ss_conf 005998899989998875426789999877421488078608876216778986335113103688617983013-2068 Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTD 215 (896) Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtD 215 (896) T Consensus 73 ~~---------------~~~~~~~~~~~~~~~~-~~~~~~p~g~g~g~~~~~~-------------~g~~~p~~~~~~~d 123 (712) T TIGR00139 73 KS---------------DKNLKKYKNIEEFAKK-HGVDFYPAGRGIGHQILIE-------------EGFAWPGNLAVASD 123 (712) T ss_pred CC---------------HHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCEEEEE-------------CCCCCCCCEEEECC T ss_conf 21---------------1234666666766755-1542134555655223430-------------35334430122024 Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE--C Q ss_conf 87644452012320343489999970775141167289999976778644368899999998410221212799961--5 Q gi|254780451|r 216 SHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG--S 293 (896) Q Consensus 216 SHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G--~ 293 (896) T Consensus 124 ~~~~~~gg~g~~g~p~~~~d~~~~w~~g~~ww~~pp~~~~~~~g~~p~g~~g~d~~~~~cg~~~~d~~~~~~~~~~g~~~ 203 (712) T TIGR00139 124 SHSNTYGGLGCLGTPIVRTDAAAVWATGKTWWQIPPVAKVELKGVLPPGVTGKDVIVALCGLFNNDDVLNHAIEFTGSED 203 (712) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHH T ss_conf 33321245332355300011012200464100157531023313367887630244333310242023322221146501 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCC--------HHHHHHHHHHH--HHHHCCCCC-CCCCCC Q ss_conf 5001787563212000100372037751998999999863999--------88999999874--641023676-766788 Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRS--------NSRVDLVEAYT--KVQGMWRED-IDYEKV 362 (896) Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~--------~~~v~lve~Y~--ka~~l~~~~-~~d~~a 362 (896) T Consensus 204 ~~~~~~~d~~~~~~~~~~~wg~~~g~~p~d~~~~~w~~~~~~~~~~g~~~~p~~~~~~~~~~~p~~~~~~~~p~~~d~~~ 283 (712) T TIGR00139 204 TLNALPVDHRLTIANLTTEWGALSGLFPVDKTLKGWLKGKATLAKLGLNDGPFKNPKAERFTHPLLEELFENPLKADKGA 283 (712) T ss_pred HHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 22211322101110011000000023202467776540102344421456643230234443256787651343234330 Q ss_pred CCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC Q ss_conf 63069999803143012265665641367773011668766400110023210245788888755544575310467654 Q gi|254780451|r 363 AFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTF 442 (896) Q Consensus 363 ~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtS 442 (896) T Consensus 284 ~~~~~~~~d~~~~~~~~~gp~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~c~~~~ 334 (712) T TIGR00139 284 HYAKELFLDLATLTPYVSGPNSVKVANPLKDLEA-----------------------------QDIKVDKAYLVSCTNSR 334 (712) T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHH-----------------------------HCCCCCCEEEEEECCCH T ss_conf 3456665534331000167553010111455432-----------------------------10101200134202211 Q ss_pred CHHHHHHHHHHHHHHHH-CC---CCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC-CCCCCH Q ss_conf 59998778899988986-49---87586730797016189999999858857777505302055322421277-768830 Q gi|254780451|r 443 NPSVMIGAGLLARNAVR-AG---LKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS-GALKKE 517 (896) Q Consensus 443 np~~miaAgllAkkAv~-~G---lkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns-G~l~~~ 517 (896) T Consensus 335 ~-~d~~~~~~~~~~~~~~~gg~~~~~~pg~~~~~~~~~~~~~~~~~~~g~w~~~~~~g~~~~p~gcgpc~g~g~g~~~pg 413 (712) T TIGR00139 335 L-SDLAAAADVFCPAGDLNGGKVPKVHPGVEFYVAAASSPEELDAEGNGDWEKLLEAGCTPLPAGCGPCIGLGAGLLEPG 413 (712) T ss_pred H-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC T ss_conf 3-456666665420000256645422455112211013313332013531578875045225655552000344334633 Q ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC-CCCC----CCCCCCCCCCCCCCC Q ss_conf 22101136635878633676666546854331000597899999851612223100-2355----488886320015688 Q gi|254780451|r 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK-DPIG----EDQQGSPVYLRDIWP 592 (896) Q Consensus 518 i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~-dplg----~~~~G~~v~L~DiwP 592 (896) T Consensus 414 --------~---~g~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~g~~~~p~~~~~~~gw~~~~~~~g~g~~~~~~~~ 482 (712) T TIGR00139 414 --------E---VGISATNRNFKGRLGSKDALAYLGSPEVVAASALLGKLSGPGWYLTPEGWTEVPFGEGDGVKEEDRLL 482 (712) T ss_pred --------C---CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf --------1---13101354323334530234431351244444442012576310045653101035676643022332 Q ss_pred CHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 8578888-876415832100012233478712201557877620567433342378876776545543324358558999 Q gi|254780451|r 593 KDSEIQS-FVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671 (896) Q Consensus 593 s~~Ei~~-~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~ 671 (896) T Consensus 483 ~~~~~~~~~~g~~~~~---------~~~~~~~~~-~~~p~~~~----~~~g~~~---~~~g~p------~~~~g-~~~~c 538 (712) T TIGR00139 483 TNEEALEKIIGILDDP---------VADGEKNFA-TEAPKVEE----SEQGLTE---ILPGFP------EEFSG-ELVLC 538 (712) T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHH-HCCCCCHH----HHCCHHH---HHCCCC------HHHCC-CEEEE T ss_conf 0056789886544322---------210022211-01432000----1200355---422542------01056-36774 Q ss_pred ECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCC Q ss_conf 65885723316456555447378889874988656314565302357776652036012232125777657722453899 Q gi|254780451|r 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSK 751 (896) Q Consensus 672 lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~ 751 (896) T Consensus 539 d~d~~~~dg~~pg----------~~~~~dd~p~~~-------------~~~~c~-----~~~d-----~~~~~~~----- 580 (712) T TIGR00139 539 DADNVNTDGIYPG----------KYTYQDDVPPEK-------------LARVCL-----ENYD-----PEFRTKA----- 580 (712) T ss_pred ECCCCCCCCCCCC----------CCCCCCCCCHHH-------------HHHHHH-----HHCC-----CCCCCCC----- T ss_conf 0565555642466----------423334466567-------------888876-----4136-----1010213----- Q ss_pred CEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC Q ss_conf 78737999998998199889994677786730799988667617089997647898885053552322331789 Q gi|254780451|r 752 EELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896) Q Consensus 752 ~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896) T Consensus 581 ---------------~~gd~~~~g~~~g~g~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~p~~ 639 (712) T TIGR00139 581 ---------------HPGDILVSGFNFGCGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLGLEVPAL 639 (712) T ss_pred ---------------CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf ---------------55623663123466752245556555315542651343320000110012433225789 |
2.1.36 from EC) catalyses the dehydration of cis-homoaconitate to homoisocitric acid. It is an enzyme from the alpha-aminoadipate pathway of lysine biosynthesis, and has been identified in higher fungi and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Like aconitase, this enzyme binds a [4Fe-4S]-cluster, and it has a similar domain architecture to aconitase and isopropylmalate isomerase family proteins, although it catalyses a different reaction . Homoaconitase is found in the mitochondria of certain fungi. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0004409 homoaconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009085 lysine biosynthetic process. |
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=6e-37 Score=289.02 Aligned_cols=422 Identities=23% Similarity=0.344 Sum_probs=293.9 Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCH Q ss_conf 86657999999986123554577766364532522000003579999999999999719999992878981399868321 Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLI 135 (896) Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~ 135 (896) T Consensus 369 ~G~TlaqKmvgkAcG~-~-gv~pG~~cep~~ttVGSQDTTGpMTrdEl-------k~lA~----l~--f~adlvm----Q 429 (841) T PRK09238 369 KGFTLAQKMVGRACGV-P-GVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC----LG--FSADLVM----Q 429 (841) T ss_pred CCEEHHHHHHHHHCCC-C-CCCCCCCEEEEEEEECCCCCCCCCCHHHH-------HHHHC----CC--CCCCHHH----H T ss_conf 7513999998873399-8-76778710257752147768886638999-------97651----38--6733333----1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EEC Q ss_conf 1005998899989998875426789999877421488078608876216778986335113103688617983013-206 Q gi|254780451|r 136 VDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGT 214 (896) Q Consensus 136 vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGt 214 (896) T Consensus 430 S--fCHTAaypkp~d~~~--~~~Lp~F~~----~r-GgvslrpgdgvIHswL----N-----------rm~lpDtvgtGG 485 (841) T PRK09238 430 S--FCHTAAYPKPVDVKT--HHTLPDFIM----NR-GGVSLRPGDGVIHSWL----N-----------RMLLPDTVGTGG 485 (841) T ss_pred C--CCCCCCCCCHHHHHH--HHHHHHHHH----HC-CCEECCCCCCCHHHHH----H-----------HCCCCCCEECCC T ss_conf 3--434445687465552--455799998----56-9853159986089998----6-----------142775233278 Q ss_pred CCCCCCCCCCHHHHCCCCH-HHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHH-HHHC----------CCC Q ss_conf 8876444520123203434-899999707751411672899999767786443688999999-9841----------022 Q gi|254780451|r 215 DSHTTMINALGILGWGVGG-IEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTIT-QMLR----------KEG 282 (896) Q Consensus 215 DSHT~~~galG~la~GVGg-~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~-~~Lr----------~~G 282 (896) T Consensus 486 DSHTRfp~Gi---sFpagSGlVAfaaatG~-mpl~mPESVlVrFkG~mqpgitlRDlV~Aip~~aik~glltv~k~~k~N 561 (841) T PRK09238 486 DSHTRFPIGI---SFPAGSGLVAFAAATGV-MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIKQGLLTVEKKGKKN 561 (841) T ss_pred CCCCCCCCCE---EECCCCCHHHHHHHCCC-CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC T ss_conf 6555542330---10588730256776187-6678875079997135689962999998889999970552122227840 Q ss_pred C-CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH-HHHHHH----------CCCC-----HHHHHHHHH Q ss_conf 1-2127999615500178756321200010037203775199899-999986----------3999-----889999998 Q gi|254780451|r 283 V-VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT-IDYLRL----------SGRS-----NSRVDLVEA 345 (896) Q Consensus 283 v-vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T-~~YL~~----------tGR~-----~~~v~lve~ 345 (896) T Consensus 562 iF~GRilEieg--l~~L~veQAFelsDasAErsaa~cti~l~~e~v~eyl~sni~ll~~MI~~Gy~d~~tl~rRi~~m~~ 639 (841) T PRK09238 562 IFSGRILEIEG--LPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEE 639 (841) T ss_pred EECCEEEEECC--CCCCCHHHHEECCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 22232789715--7763366521013123432105776864888899999999999999998268886899999999998 Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC Q ss_conf 746410236767667886306999980314-3012265665641367773011668766400110023210245788888 Q gi|254780451|r 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 (896) Q Consensus 346 Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (896) T Consensus 640 wl~~p~ll---~~D~~A~Yaa~ieidl~~i~EPila~PndpDdv~~lS~v~~~-------------~------------- 690 (841) T PRK09238 640 WLANPELL---EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------K------------- 690 (841) T ss_pred HHCCCCCC---CCCCCCCEEEEEEECHHHCCCCEECCCCCCCHHHHHHHHHCC-------------C------------- T ss_conf 74495236---789999657899974788288755288993113207776067-------------4------------- Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC Q ss_conf 75554457531046765459998778899988986498758673079701618999999985885777750530205532 Q gi|254780451|r 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896) Q Consensus 425 l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896) T Consensus 691 -----idevFiGSCM--tniGh~ra~~~~l~~-----~~~~~~~rlwv~pPT~md~~~L~~Eg~y~i~~~~gar~E~PGC 758 (841) T PRK09238 691 -----IDEVFIGSCM--TNIGHFRAAGKLLEG-----KGGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGC 758 (841) T ss_pred -----CCEEEEEECC--CCHHHHHHHHHHHHH-----CCCCCCCCEEECCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCC T ss_conf -----5547763110--351579999999972-----5778886469679973249998753159998742642028875 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 24212777688302210113663587863367666654685433100059789999985161222310023554888863 Q gi|254780451|r 505 TTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSP 584 (896) Q Consensus 505 g~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~ 584 (896) T Consensus 759 sLCMGNQar--------v~~~~t-V--~sTSTRnF~nRlg~~a-~vyLgSaelaav~a~LGr~----------------- 809 (841) T PRK09238 759 SLCMGNQAR--------VADGAT-V--FSTSTRNFPNRLGKGA-NVYLGSAELAAVCALLGRL----------------- 809 (841) T ss_pred CCCCCCHHH--------CCCCCE-E--EEECCCCCCCCCCCCC-EEEEEHHHHHHHHHHHCCC----------------- T ss_conf 303266510--------279998-9--8714567876446886-3897302799999986579----------------- Q ss_pred CCCCCCCCCHHHHHHHHHH Q ss_conf 2001568885788888764 Q gi|254780451|r 585 VYLRDIWPKDSEIQSFVNK 603 (896) Q Consensus 585 v~L~DiwPs~~Ei~~~~~~ 603 (896) T Consensus 810 -------Pt~eEY~~~~~~ 821 (841) T PRK09238 810 -------PTVEEYQAYVAE 821 (841) T ss_pred -------CCHHHHHHHHHH T ss_conf -------999999999986 |
|
>COG1049 AcnB Aconitase B [Energy production and conversion] | Back alignment and domain information |
---|
Probab=100.00 E-value=5.5e-35 Score=274.69 Aligned_cols=415 Identities=25% Similarity=0.362 Sum_probs=282.2 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE---EECC Q ss_conf 6657999999986123554577766364532522000003579999999999999719999992878981399---8683 Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHS 133 (896) Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlv---iDHs 133 (896) T Consensus 372 G~TlaqKmvgrAcG-v~-girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHT 436 (852) T COG1049 372 GFTLAQKMVGRACG-VP-GIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHT 436 (852) T ss_pred CCCHHHHHHHHCCC-CC-CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH----HHHCCC---------CHHHHHHCCCC T ss_conf 41399987410248-76-20678733514553045667887648999987----763326---------02554410132 Q ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE Q ss_conf 2110059988999899988754267899998774214880786--08876216778986335113103688617983013 Q gi|254780451|r 134 LIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC 211 (896) Q Consensus 134 v~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~--pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl 211 (896) T Consensus 437 A--aypk-pvdv--------~th~~Lp~Fi-------~~rGgVslrpgdGVIHswL----N-----------rmllpDtv 483 (852) T COG1049 437 A--AYPK-PVDV--------KTHHTLPDFI-------MNRGGVSLRPGDGVIHSWL----N-----------RMLLPDTV 483 (852) T ss_pred C--CCCC-CCCH--------HCCCCCHHHH-------HHCCCEECCCCCCCHHHHH----H-----------HCCCCCCE T ss_conf 3--4688-2001--------1255326778-------6168630279996388988----7-----------44487430 Q ss_pred -EECCCCCCCCCCCHHHHCCCCHH-HHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHH------HHHCC--- Q ss_conf -20688764445201232034348-99999707751411672899999767786443688999999------98410--- Q gi|254780451|r 212 -VGTDSHTTMINALGILGWGVGGI-EAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTIT------QMLRK--- 280 (896) Q Consensus 212 -VGtDSHT~~~galG~la~GVGg~-eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~------~~Lr~--- 280 (896) T Consensus 484 gtGGDSHTRfpiGi---sFpAgSGlVAfAaatGv-mpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~ 559 (852) T COG1049 484 GTGGDSHTRFPIGI---SFPAGSGLVAFAAATGV-MPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKK 559 (852) T ss_pred ECCCCCCCCCCCCC---EECCCCCHHHHHHHCCC-CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCC T ss_conf 03886555542330---00588731345675186-457887217998603557986799987663799987400110015 Q ss_pred --CCC-CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEE-ECCCHHHHHHHHHC----------CCCH-----HHHH Q ss_conf --221-212799961550017875632120001003720377-51998999999863----------9998-----8999 Q gi|254780451|r 281 --EGV-VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGF-FPVDRGTIDYLRLS----------GRSN-----SRVD 341 (896) Q Consensus 281 --~Gv-vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gi-fp~De~T~~YL~~t----------GR~~-----~~v~ 341 (896) T Consensus 560 ~k~NiFsGRIlEie--glp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~ 637 (852) T COG1049 560 GKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRID 637 (852) T ss_pred CCCCEECCEEEEEC--CCCCCCHHHHEECCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 76431112268861--6875116553312301243210466686270259999998899999999830332788999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC Q ss_conf 9998746410236767667886306999980314-301226566564136777301166876640011002321024578 Q gi|254780451|r 342 LVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 (896) Q Consensus 342 lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (896) T Consensus 638 ~me~wla~p~l---le~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~~---------------------- 692 (852) T COG1049 638 KMEAWLANPEL---LEADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDK---------------------- 692 (852) T ss_pred HHHHHHCCCCC---CCCCCCCCEEEEEEEEHHHCCCCEECCCCCCHHHHHHHHHCCCC---------------------- T ss_conf 99986528401---47888874268999606771787542899902766667751773---------------------- Q ss_pred CCCCCCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEE Q ss_conf 8888755544575310467-654599987788999889864987586730797016189999999858857777505302 Q gi|254780451|r 421 CDFHLKHGDVAIASITSCT-NTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSL 499 (896) Q Consensus 421 ~~~~l~~g~VvIAaIgSCT-NtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i 499 (896) T Consensus 693 ---------idevFiGSCMtniG--h~ra~~klL~~-~--~~-~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~ 755 (852) T COG1049 693 ---------IDEVFIGSCMTNIG--HFRAAGKLLEN-A--KG-ELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARI 755 (852) T ss_pred ---------CCEEEEEHHHCCCH--HHHHHHHHHHC-C--CC-CCC--CCEEECCCCCCCHHHHHHCCHHHHHHHCCCEE T ss_conf ---------31134410112521--49999999960-7--66-777--64596488623499986530688876313331 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 05532242127776883022101136635878633676666546854331000597899999851612223100235548 Q gi|254780451|r 500 VGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGED 579 (896) Q Consensus 500 ~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~ 579 (896) T Consensus 756 E~PGCsLCMGNQa--------rv~dgatV---~sTSTRnF~nRlg~~a~-vyL~Saelaav~aiLGki------------ 811 (852) T COG1049 756 EMPGCSLCMGNQA--------RVADGATV---FSTSTRNFPNRLGKGAN-VYLASAELAAVCAILGKI------------ 811 (852) T ss_pred CCCCCCCCCCCHH--------HHCCCCEE---EEECCCCCCCCCCCCCC-EEECCCHHHHHHHHHCCC------------ T ss_conf 1787520226674--------63369879---86224567742246632-244000799999987589------------ Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 888632001568885788888764 Q gi|254780451|r 580 QQGSPVYLRDIWPKDSEIQSFVNK 603 (896) Q Consensus 580 ~~G~~v~L~DiwPs~~Ei~~~~~~ 603 (896) T Consensus 812 ------------Pt~eEY~~~v~~ 823 (852) T COG1049 812 ------------PTVEEYMAYVAK 823 (852) T ss_pred ------------CCHHHHHHHHHH T ss_conf ------------988999999987 |
|
>TIGR00117 acnB aconitate hydratase 2; InterPro: IPR004406 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
---|
Probab=99.83 E-value=7.6e-19 Score=156.75 Aligned_cols=453 Identities=24% Similarity=0.331 Sum_probs=281.6 Q ss_pred HHHCCCHHHHHHHHHHHHCC-------------------CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCH Q ss_conf 54457119999998874048-------------------66579999999861235545777663645325220000035 Q gi|254780451|r 37 ISRLPCSMKVLLENLLRFED-------------------GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGV 97 (896) Q Consensus 37 ~~~lP~s~rillEn~~R~~~-------------------~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~ 97 (896) T Consensus 344 ~g~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~cg~--~g~~pg~~c~p~~~~~g~~d~~g~ 421 (864) T TIGR00117 344 GGRIPLLIGRGLTDKAREALGLGPSPLFKKPSAPADDGKGFTLAQKLVGKACGV--KGIRPGTYCEPKLTTVGSQDTTGP 421 (864) T ss_pred CCCCEEEECCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCEEECCCCCCCCC T ss_conf 674113430310023466516872100004444322344303566665323032--224676433531000366444443 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 79999999999999719999992878981399868321100599889998999887542678999987742148807860 Q gi|254780451|r 98 PAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVP 177 (896) Q Consensus 98 pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~p 177 (896) T Consensus 422 ~~~d~~~~----~~~~~~~~~~~---------~------~~~c~~~~~p~p~d~~~--~~~~p~~~~--~---~gg~~~~ 475 (864) T TIGR00117 422 LTRDELKE----LACLGFDADLV---------L------QSFCHTAAYPKPVDVST--HATLPDFIT--N---RGGVALR 475 (864) T ss_pred CCHHHHHH----HHHHCCCCCHH---------H------HHHHHHHCCCCCCCCCC--CCCCCHHHH--C---CCCEEEC T ss_conf 20566666----66512563134---------5------54443303676443310--001212343--1---5760224 Q ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEE Q ss_conf 8876216778986335113103688617983013-206887644452012320343489999970775141167289999 Q gi|254780451|r 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFE 256 (896) Q Consensus 178 PG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~ 256 (896) T Consensus 476 pgdg~~~~w~~---------------~~~~pd~~g~ggd~~~~~p~g~~-~p~g~g-~~~~~~~~g~-~p~~~p~~~~~~ 537 (864) T TIGR00117 476 PGDGVIHSWLN---------------RLLLPDTLGTGGDSHTRFPLGIS-FPAGSG-LVAFAAATGV-LPLDLPESVLVR 537 (864) T ss_pred CCCCHHHHHHH---------------HHCCCCCCCCCCCCCCCCCCEEC-CCCCCC-HHHHHHHHCC-CCCCCCCCEEEE T ss_conf 66413677665---------------41265223578754321211001-456552-3334454313-325664000011 Q ss_pred EECCCCCCCCHHHHHHHHHHHHCCCCC------------CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCH Q ss_conf 976778644368899999998410221------------21279996155001787563212000100372037751998 Q gi|254780451|r 257 VTGSLQEGVTATDLVLTITQMLRKEGV------------VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDR 324 (896) Q Consensus 257 L~G~L~~gVtakDiiL~i~~~Lr~~Gv------------vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De 324 (896) T Consensus 538 ~~g~~~pg~~~~d~~~~~p~~~~~~g~~~~~~~~~~~~~~g~~~~~~--g~pd~~~~~~~~~~d~~~~~~~~~~~~~~~~ 615 (864) T TIGR00117 538 FKGELQPGITLRDLVNAIPWYAIKQGLLTVEKKGKVNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNK 615 (864) T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCEEEEC--CCCCCHHHHHHHHCCCHHHHHHCCCEEECCH T ss_conf 21334667227777654223444202201025662010145123314--7774102222211000011100110232130 Q ss_pred H-HHHHHHHC----------CCCHH-----HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCC Q ss_conf 9-99999863----------99988-----9999998746410236767667886306999980314-301226566564 Q gi|254780451|r 325 G-TIDYLRLS----------GRSNS-----RVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPES 387 (896) Q Consensus 325 ~-T~~YL~~t----------GR~~~-----~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d 387 (896) T Consensus 616 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~w~~~p~~~---~~d~~~~~~~~~~~~~~~~~~p~~~~p~dpd~ 692 (864) T TIGR00117 616 EPVIEYLKSNIVLLKWLIAEGYGDKRTLLRRIDGLEEWLANPELL---EGDADAEYAAVIEIDLAEIKEPILAAPNDPDD 692 (864) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHCCHHHHCCCCEECCCCCHH T ss_conf 257887630156666776404312688999988888752361010---56554201332110244511220106897212 Q ss_pred EEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 13677730116687664001100232102457888887555445753104676545999877889998898649875867 Q gi|254780451|r 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467 (896) Q Consensus 388 ~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~ 467 (896) T Consensus 693 ~~~~~~~~~~~------~g~~p~~~~~------------------~~~g~c~~--~~g~~~~~~~~~~-----~~~g~~~ 741 (864) T TIGR00117 693 VKPLSEVLGDT------TGKRPHAIDE------------------VFIGSCLT--NIGHFRAAGKLLD-----GAPGPLP 741 (864) T ss_pred HHHHHHHHHHC------CCCCCCHHHH------------------HHHHHHHH--HHHHHHHHHHHHH-----CCCCCCC T ss_conf 56777764101------3666420223------------------33323443--2234556677763-----2687545 Q ss_pred CEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 30797016189999999858857777505302055322421277768830221011366358786336766665468543 Q gi|254780451|r 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDV 547 (896) Q Consensus 468 Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~ 547 (896) T Consensus 742 ~~~w~~pp~~~d~~~~~~~g~~~~~~~~g~~~~~pgc~~c~g~~~~~--------~d~~-~--~~~~~~~~~~~~~g~g~ 810 (864) T TIGR00117 742 GRLWVAPPTRLDEQELTEEGYYGIFGAAGARTEVPGCSLCLGNQARV--------EDGA-T--VFSTSTRNFPNRLGKGA 810 (864) T ss_pred CEEEECCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCHH--------CCCC-E--EEEECCCCCCCCCCCCC T ss_conf 31574175422057765322021010245421167410002651000--------0561-4--76402344430026652 Q ss_pred CCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 310005978999998516122231002355488886320015688857888887641583 Q gi|254780451|r 548 EANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTC 607 (896) Q Consensus 548 ~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~ 607 (896) T Consensus 811 ~~-~~~~~~~~~~~~~~g~~------------------------p~~~~~~~~~~~~~~~ 845 (864) T TIGR00117 811 KV-YLGSAELAAVCALLGKL------------------------PTPEEYLTLVSEKLEP 845 (864) T ss_pred EE-EECHHHHHHHHHHHHCC------------------------CCHHHHHHHHHHHHHH T ss_conf 02-21114677899876046------------------------7667888888766433 |
2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents bacterial aconitase B (AcnB) enzymes, which can switch between aconitase enzyme activity and post-translational gene regulation. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0005515 protein binding, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle. |
>KOG0454 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=6.6e-36 Score=281.40 Aligned_cols=381 Identities=20% Similarity=0.246 Sum_probs=244.4 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC Q ss_conf 98746410236767667886306999980314301226566564136777301166876640011002321024578888 Q gi|254780451|r 344 EAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423 (896) Q Consensus 344 e~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (896) T Consensus 12 ~~we~avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt 91 (502) T KOG0454 12 CKWESAVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNT 91 (502) T ss_pred CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCC T ss_conf 41566656551226764431100100020112324552488665788677689974213688875533110202678886 Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE-EEEECCCHHHHHHHHHCCCHHHHHHHCCEECCC Q ss_conf 8755544575310467654599987788999889864987586730-797016189999999858857777505302055 Q gi|254780451|r 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVK-TSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGF 502 (896) Q Consensus 424 ~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vk-t~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~ 502 (896) T Consensus 92 ~v~s~~~dkVfigsctn~riedlr~aAa------Vv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~eagF~wrea 165 (502) T KOG0454 92 NVDSLMTDKVFIGSCTNIRIEDLREAAA------VVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAGFYWREA 165 (502) T ss_pred CCCEEEECCEECCCCCCCCHHHHHHHHH------CCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCEEHHHC T ss_conf 5204662334415555420887765441------2054045753651388068316676888876678877613201322 Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC-CCCCCCCCCCCCCC Q ss_conf 32242127776883022101136635878633676666546854331000597899999851612-22310023554888 Q gi|254780451|r 503 GCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV-RKNLIKDPIGEDQQ 581 (896) Q Consensus 503 GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I-~~d~~~dplg~~~~ 581 (896) T Consensus 166 gcs~clgmnpd~l~~yer----------castsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~~~~~~-----~--- 226 (502) T KOG0454 166 GCSFCLGMNPDGLCHYER----------CASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDLGFREF-----T--- 226 (502) T ss_pred CCCCCCCCCCHHCCHHHH----------HHHCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCC-----C--- T ss_conf 664113688000137887----------5423687861001655432-22205677525546532463445-----5--- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CHH-HCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC-- Q ss_conf 863200156888578888876415832100012233478-712-201557877620567433342378---8767765-- Q gi|254780451|r 582 GSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKG-DSS-WWNIEVPESETYMWDEKSTYVRNP---PYFETIS-- 654 (896) Q Consensus 582 G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g-~~~-w~~l~~~~~~~y~w~~~StyI~~p---Pff~~~~-- 654 (896) T Consensus 227 ~-----k~~------------~~~~Ps~~l~-----~~g~s~sv~~~~~li~~---ia~ds~t~i~~~at~e~-~s~~sS 280 (502) T KOG0454 227 G-----KDS------------LKVSPSPFLT-----LKGESPSVLPAKDLIVS---IATDSSTDIPRVATMEF-SSTTSS 280 (502) T ss_pred C-----CCC------------CCCCCCCEEE-----ECCCCCCCCCCCCCHHH---HHCCCCCCCCCEECCCC-CCCCCC T ss_conf 6-----421------------2479983587-----27988653334443011---10122222431002557-886443 Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH Q ss_conf 45543324358558999658857233164565554473788898749886563145653023577766520360122321 Q gi|254780451|r 655 KHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 (896) Q Consensus 655 ~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l 734 (896) T Consensus 281 l~m~~F~tLc-----~vv~dNiDTD~IIP~q----------fltli~~~~~~---------------~~~f~~~~~dg~- 329 (502) T KOG0454 281 LGMETFHTLC-----GVVADNIDTDQIIPAQ----------FLTLIPSTGLI---------------LSCFYEVALDGL- 329 (502) T ss_pred CCCCCEEEEE-----HHHHHHCCCCCCCCHH----------HHCCCCCCHHH---------------HHHHHHHEECCC- T ss_conf 3574300110-----0145307767635755----------52015553665---------------532122102478- Q ss_pred CCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCC Q ss_conf 25777657722453899787379999989981998899946777867307999886676170899976478988850535 Q gi|254780451|r 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIG 814 (896) Q Consensus 735 ~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~ 814 (896) T Consensus 330 ----~k-~~~~dFv~~vE~~~~~------------siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~a 392 (502) T KOG0454 330 ----PK-SFVTDFVLPVEPLRKY------------SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVA 392 (502) T ss_pred ----CH-HHCCCEECCCCCCCEE------------EEEECCCCCCCCCCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHH T ss_conf ----23-3122322146556436------------799645775555545557302322123141160389999976775 Q ss_pred CEEEEEECC Q ss_conf 523223317 Q gi|254780451|r 815 MGVIPFAFG 823 (896) Q Consensus 815 mGiLPL~F~ 823 (896) T Consensus 393 tG~l~~~~s 401 (502) T KOG0454 393 TGELPPLPS 401 (502) T ss_pred CCCCCCCCC T ss_conf 287468985 |
|
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed | Back alignment and domain information |
---|
Probab=99.95 E-value=1.1e-26 Score=214.14 Aligned_cols=155 Identities=26% Similarity=0.427 Sum_probs=110.2 Q ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEE Q ss_conf 58999658857233164565554473788898749886563145653023577766520360122321257776577224 Q gi|254780451|r 667 RILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTI 746 (896) Q Consensus 667 rvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~ 746 (896) T Consensus 3 rv-~~~GDnIdTD~I~P~----------~~l~~~---------------~~~~l~~~~f~~~~--------p----~f~- 43 (163) T PRK00439 3 RV-WKFGDNIDTDVIIPG----------RYLNTS---------------DPDELAKHAMEDAD--------P----EFA- 43 (163) T ss_pred CE-EECCCCCCHHHCCCH----------HHHCCC---------------CHHHHHHHCCCCCC--------C----CCC- T ss_conf 16-877999886437527----------665659---------------97788774135668--------6----400- Q ss_pred ECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 53899787379999989981998899946777867307999886676170899976478988850535523223317898 Q gi|254780451|r 747 HYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGI 826 (896) Q Consensus 747 ~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~ 826 (896) T Consensus 44 --------------~~~~~-g--dIiVaG~NFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~in~Gl~~i~~~~-- 104 (163) T PRK00439 44 --------------KKVKP-G--DIIVAGKNFGCGSSREHAPLALKAAGVSAVIAKSFARIFFRNAINIGLPVLECPE-- 104 (163) T ss_pred --------------CCCCC-C--CEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEECCC-- T ss_conf --------------14668-7--5899688516888679999999985987998523789998328877995680565-- Q ss_pred CHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH Q ss_conf 98881989743899726322589973899998189967999999873899999999909836898887 Q gi|254780451|r 827 SWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896) Q Consensus 827 ~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896) T Consensus 105 -~~~i~-~gd-~i~vD----~~~g-~--v~-n~t~g~~~~~~---pl-~~~~~eii~aGGl~~y~kk~ 157 (163) T PRK00439 105 -ADKIE-DGD-EVEVD----LETG-V--IK-NLTKGEEYKAK---PI-PEFLLEILKEGGLLEYLKKH 157 (163) T ss_pred -HHHCC-CCC-EEEEE----CCCC-E--EE-ECCCCEEEEEE---CC-CHHHHHHHHCCCHHHHHHHH T ss_conf -65446-899-99997----7799-8--99-75698499853---59-99999999839999999986 |
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>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
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Probab=99.92 E-value=4.4e-25 Score=202.32 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=109.6 Q ss_pred EEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCC-HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEC Q ss_conf 9965885723316456555447378889874988-656314565302357776652036012232125777657722453 Q gi|254780451|r 670 CLLGDKITTDHISPAGSIPLQSAAASYLRQRGVK-EKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHY 748 (896) Q Consensus 670 ~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~-~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~ 748 (896) T Consensus 4 wkFGDdvDTD~IIPG----------rYLR~--~~D~~eLA~h-------------aM~g~~--P----------eF~--- 43 (159) T TIGR02087 4 WKFGDDVDTDVIIPG----------RYLRT--TDDPDELASH-------------AMEGID--P----------EFA--- 43 (159) T ss_pred EECCCCCCCCEECCC----------CCCCC--CCCHHHHHHH-------------CCCCCC--C----------CHH--- T ss_conf 760686467704585----------22575--4777889987-------------055899--6----------313--- Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECC-CCCC Q ss_conf 899787379999989981998899946777867307999886676170899976478988850535523223317-8989 Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFG-KGIS 827 (896) Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~-~~~~ 827 (896) T Consensus 44 ---------------~kvr~GDviVAGkNFGcGSSREQA~~ALK~aGv~aviA~SFARIFYRNAIN~GLP~i~~~e~vte 108 (159) T TIGR02087 44 ---------------KKVREGDVIVAGKNFGCGSSREQAALALKAAGVAAVIAESFARIFYRNAINIGLPLIEAKEDVTE 108 (159) T ss_pred ---------------HHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHCCCCEEEECCCCEE T ss_conf ---------------40789978871416477887788999997479048985201660103233325202631689650 Q ss_pred HHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH Q ss_conf 8881989743899726322589973899998189967999999873899999999909836898887 Q gi|254780451|r 828 WKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896) Q Consensus 828 ~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896) T Consensus 109 ~--~~-dGD~-V~vdl~~----g---eir~-~~~~~--~~--~~~~~~df~L~Il~~GGLl~y~kK~ 159 (159) T TIGR02087 109 L--IK-DGDE-VEVDLEK----G---EIRK-VNGKE--VY--KGRPLPDFLLEILEEGGLLEYLKKR 159 (159) T ss_pred E--EC-CCCE-EEEECCC----C---EEEE-ECCCE--EE--ECCCCCCHHHHHHHCCCEEEECCCC T ss_conf 2--13-7887-8997576----6---0888-57950--78--6468985589998718802201259 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex. |
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=99.88 E-value=9.7e-22 Score=177.92 Aligned_cols=164 Identities=25% Similarity=0.397 Sum_probs=112.9 Q ss_pred EEEEEC-CCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEE Q ss_conf 899965-8857233164565554473788898749886563145653023577766520360122321257776577224 Q gi|254780451|r 668 ILCLLG-DKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTI 746 (896) Q Consensus 668 vL~~lG-D~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~ 746 (896) T Consensus 10 ~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~---------PdF~~ 55 (191) T COG0066 10 RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD---------PDFVL 55 (191) T ss_pred EEEECCCCCCCCCCCCCH----------HHHCC--CCHHHH-------------HHCCCCCCCCCC---------CCHHH T ss_conf 597068887760438628----------87453--687466-------------421531010249---------64321 Q ss_pred ECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 53899787379999989981998899946777867307999886676170899976478988850535523223317898 Q gi|254780451|r 747 HYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGI 826 (896) Q Consensus 747 ~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~ 826 (896) T Consensus 56 n~~~------------yq---~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~ 120 (191) T COG0066 56 NVPP------------YQ---GGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEED 120 (191) T ss_pred CCCC------------CC---CCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCEECCHHH T ss_conf 5886------------67---86489966887788527789999997592499936299998701565086755518388 Q ss_pred CHHHHCC-CCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC----CHHHHHHHHH Q ss_conf 9888198-9743899726322589973899998189967999999873899999999909----8368988872 Q gi|254780451|r 827 SWKNLNI-KGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG----GILQAVLRQL 895 (896) Q Consensus 827 ~~~~L~l-~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G----GiL~yvlr~l 895 (896) T Consensus 121 ~~~l~~~~~g~-~i~VDL-~----~~----~v~~~~~~~~~f~i-----~~f~~~~L~~GlD~iGlt~~~~~~i 179 (191) T COG0066 121 VTELFEDVPGD-EVTVDL-E----TG----EVTNPTGGEEPFEI-----DDFRREILLNGLDDIGLTLQHKKEI 179 (191) T ss_pred HHHHHHHCCCC-EEEEEC-C----CC----EEEECCCCEEECCC-----CHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 99998757898-899986-8----89----69817998787259-----9899999985884113599988766 |
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>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional | Back alignment and domain information |
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Probab=99.71 E-value=9.5e-17 Score=141.46 Aligned_cols=158 Identities=24% Similarity=0.361 Sum_probs=103.0 Q ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCC-CCE Q ss_conf 5899965885723316456555447378889874988656314565302357776652036012232125777657-722 Q gi|254780451|r 667 RILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG-GYT 745 (896) Q Consensus 667 rvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~eg-g~T 745 (896) T Consensus 10 ~a~pl~~~nIDTD~IiP~----------rfLk~--~~~~gl-------------g~~lF~d~R~~~-----~g~~~~dF~ 59 (201) T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--ITRTGF-------------GKHLFDDWRYLD-----DGQPNPDFV 59 (201) T ss_pred EEEECCCCCCCCCCCCHH----------HHCCC--CCHHHH-------------HHHHCCCCCCCC-----CCCCCCCCC T ss_conf 998468777772128269----------87597--886265-------------886220121468-----999787755 Q ss_pred EECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC Q ss_conf 45389978737999998998199889994677786730799988667617089997647898885053552322331789 Q gi|254780451|r 746 IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896) Q Consensus 746 ~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896) T Consensus 60 LN~~~------------~~~a~---ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~SFadIF~~Nc~kNGlLpI~L~~- 123 (201) T PRK01641 60 LNQPR------------YQGAS---ILLAGENFGCGSSREHAPWALADYGFRVVIAPSFADIFYGNCFKNGLLPIVLPE- 123 (201) T ss_pred CCCCC------------CCCCE---EEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEECCH- T ss_conf 67756------------68981---899678767775088999999985998999725999999889874976065099- Q ss_pred CCHHHHC----CCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC Q ss_conf 8988819----89743899726322589973899998189967999999873899999999909 Q gi|254780451|r 826 ISWKNLN----IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG 885 (896) Q Consensus 826 ~~~~~L~----l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G 885 (896) T Consensus 124 ~~i~~L~~~~~~~p~~~i~IDL-~----~q~I----~~~~-~~~~F~----I-d~~~k~~LL~G 172 (201) T PRK01641 124 EEVDELFKLVEANPGAELTVDL-E----AQTV----TAPD-KTYPFE----I-DEFRRHCLLNG 172 (201) T ss_pred HHHHHHHHHHHCCCCCEEEEEE-C----CCEE----EECC-EEEEEE----E-CHHHHHHHHHC T ss_conf 9999999999719997468970-4----5889----9399-458889----8-99999999919 |
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>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011824 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4 | Back alignment and domain information |
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Probab=99.39 E-value=8.5e-14 Score=119.88 Aligned_cols=153 Identities=28% Similarity=0.368 Sum_probs=100.1 Q ss_pred EEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEC Q ss_conf 99965885723316456555447378889874988656314565302357776652036012232125777657722453 Q gi|254780451|r 669 LCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHY 748 (896) Q Consensus 669 L~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~ 748 (896) T Consensus 3 ~~~~Gdn~~td~iiPa----------rylnt~--~~~ela~~--------~me-----------------d~~~~f~--- 42 (156) T TIGR02084 3 VLKYGDNVDTDVIIPA----------RYLNTS--DPKELAKH--------CME-----------------DLDKEFK--- 42 (156) T ss_pred EEEECCCCCCCCCCCH----------HHHCCC--CHHHHHHH--------HHH-----------------HHHHHHH--- T ss_conf 2540575464511221----------331135--76789999--------886-----------------3356776--- Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCH Q ss_conf 89978737999998998199889994677786730799988667617089997647898885053552322331789898 Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISW 828 (896) Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~ 828 (896) T Consensus 43 ---------------~~~~~G~i~v~G~nfG~GssrehaP~~ik~~G~~~~iaksfarif~rn~iniGl~i~e~~e--~~ 105 (156) T TIGR02084 43 ---------------KKVKEGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGLPIVESEE--AV 105 (156) T ss_pred ---------------HHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HH T ss_conf ---------------5421575687214336777644342221003720002446777876534541213200467--88 Q ss_pred HHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHH Q ss_conf 8819897438997263225899738999981899679999998738999999999098368988 Q gi|254780451|r 829 KNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892 (896) Q Consensus 829 ~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvl 892 (896) T Consensus 106 ~~~~-~Gd-~~~vd~~~G~~~------n~~--~~--~~~~~--~~fP~~~~~i~~~~G~~~~~~ 155 (156) T TIGR02084 106 DEIE-EGD-EVEVDLEKGIIK------NVT--KG--KEYKA--QPFPEFLQEILKAGGLLNYVK 155 (156) T ss_pred HHHH-CCC-EEEEEHHHHHHH------HHH--CC--CCCCC--CCCHHHHHHHHHCCCHHHHHC T ss_conf 6530-587-588733022666------520--46--42112--112189999985154444651 |
2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry contains predominantly bacterial 3-isopropylmalate dehydratase enzymes. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases 4.2.1 from EC and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex. |
>cd00404 Aconitase_swivel Aconitase swivel domain | Back alignment and domain information |
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Probab=99.93 E-value=4.6e-26 Score=209.51 Aligned_cols=71 Identities=42% Similarity=0.659 Sum_probs=65.1 Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEE Q ss_conf 8999467778673079998866761708999764789888505355232233178989888198974389972 Q gi|254780451|r 770 LVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR 842 (896) Q Consensus 770 lVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~ 842 (896) T Consensus 17 ~iiVag~nfG~GSSRE~A~~~l~~~Gi~~ViA~SfarIf~~N~~n~Gllpl~~~~~~d~~~i~-~g-D~l~i~ 87 (88) T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKLH-TG-DELDIY 87 (88) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHCCC-CC-CEEEEC T ss_conf 799966754778518899999998496199973299999999987892148867988995079-99-889861 |
Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. |
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins | Back alignment and domain information |
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Probab=99.86 E-value=3.3e-22 Score=181.35 Aligned_cols=70 Identities=33% Similarity=0.544 Sum_probs=58.7 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEE Q ss_conf 99946777867307999886676170899976478988850535523223317898988819897438997 Q gi|254780451|r 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINI 841 (896) Q Consensus 771 VViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i 841 (896) T Consensus 20 Ilvag~NFG~GSSREhA~~al~~~Gi~~VIa~SFa~If~~N~~n~GlLpi~~~~~~-~~~~~~~~g~ei~V 89 (91) T cd01577 20 IIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADED-VEEVEAKPGDEVEV 89 (91) T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECHHH-HHHHHCCCCCEEEE T ss_conf 89956865778528999999998495499972399999998887785128868899-99997099988998 |
3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. |
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
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Probab=96.46 E-value=0.018 Score=37.15 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=12.4 Q ss_pred EECCHHHHHHHHHHCCCCCCC Q ss_conf 005978999998516122231 Q gi|254780451|r 551 YLLSPPLVVAYALAGNVRKNL 571 (896) Q Consensus 551 yLaSP~lVvA~AiaG~I~~d~ 571 (896) T Consensus 497 FpagSGlVAfaaatG~mpl~m 517 (841) T PRK09238 497 FPAGSGLVAFAAATGVMPLDM 517 (841) T ss_pred ECCCCCHHHHHHHCCCCCCCC T ss_conf 058873025677618766788 |
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>COG1049 AcnB Aconitase B [Energy production and conversion] | Back alignment and domain information |
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Probab=93.37 E-value=0.092 Score=31.98 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=10.0 Q ss_pred EECCHHHHHHHHHHCCCCCCC Q ss_conf 005978999998516122231 Q gi|254780451|r 551 YLLSPPLVVAYALAGNVRKNL 571 (896) Q Consensus 551 yLaSP~lVvA~AiaG~I~~d~ 571 (896) T Consensus 499 FpAgSGlVAfAaatGvmpldm 519 (852) T COG1049 499 FPAGSGLVAFAAATGVMPLDM 519 (852) T ss_pred ECCCCCHHHHHHHCCCCCCCC T ss_conf 058873134567518645788 |
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>pfam01268 FTHFS Formate--tetrahydrofolate ligase | Back alignment and domain information |
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Probab=95.36 E-value=0.066 Score=33.04 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=18.9 Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHH--HCCEEEEEECCHH Q ss_conf 8199889994677786730799988667--6170899976478 Q gi|254780451|r 765 VDQVPLVVFAGVEYGNGSSRDWAAKGTR--LLGVRSVIAESFE 805 (896) Q Consensus 765 ~~~~plVViAG~~YG~GSSRdwAAkgp~--lLGVkAVIA~SFe 805 (896) T Consensus 369 ~fG~p-vVVAIN~F~~DT~~Ei~~i~~~~~~~g~~~~~s~~wa 410 (555) T pfam01268 369 KFGVP-VVVAINRFPTDTDAELALVRELCEEAGAEAAVSEHWA 410 (555) T ss_pred HCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH T ss_conf 71997-6999447899879999999999998699899940454 |
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>pfam04412 DUF521 Protein of unknown function (DUF521) | Back alignment and domain information |
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Probab=95.27 E-value=0.094 Score=31.91 Aligned_cols=65 Identities=31% Similarity=0.371 Sum_probs=49.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC Q ss_conf 7531046765459998778899988986498758673079701618999999985885777750530205532 Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896) Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896) T Consensus 289 lV~lG-cPH~Sl~El~~la~ll------~gr~~~~~~~~~V-~Tsr~v~~~a~~~G~~~~LE~aGv~vv~DTC 353 (397) T pfam04412 289 LVALG-CPHASLEELRELAELL------AGRKKAPGVPLWV-TTSRAVYSKAERAGYVDRLEAAGVKVVTDTC 353 (397) T ss_pred EEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCEEEE-ECCHHHHHHHHHCCHHHHHHHCCCEEEEEEC T ss_conf 79977-9999999999999997------2677789962999-8589999987766889999975998990265 |
Family of hypothetical proteins. |
>cd01355 AcnX Putative Aconitase X catalytic domain | Back alignment and domain information |
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Probab=94.39 E-value=0.082 Score=32.32 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=47.5 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC Q ss_conf 457531046765459998778899988986498758673079701618999999985885777750530205532 Q gi|254780451|r 430 VAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896) Q Consensus 430 VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896) T Consensus 279 ~DlV~lG-cPH~Sl~El~~la~ll------~gr~~~~~~~~~I~-Tsr~v~--a~~~G~~~~lE~aGv~vv~DTC 343 (389) T cd01355 279 PDLVVLG-CPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTC 343 (389) T ss_pred CCEEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCEEEEE-CCHHHH--HHHCCHHHHHHHCCCEEEEEEC T ss_conf 1089977-9999999999999998------36777899629998-799999--7615889999974998993146 |
Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution. |
>PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
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Probab=94.45 E-value=0.14 Score=30.65 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=15.7 Q ss_pred CEECCC-CEEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 141167-2899999767786443688999999 Q gi|254780451|r 245 ISMLLP-EVVGFEVTGSLQEGVTATDLVLTIT 275 (896) Q Consensus 245 ~~~~vP-evigv~L~G~L~~gVtakDiiL~i~ 275 (896) T Consensus 113 ysqv~PmediNLHfTGD~hAit~AhNLlaA~i 144 (556) T PRK13505 113 YAQVLPMEDINLHFTGDFHAITSANNLLAALI 144 (556) T ss_pred CEEECCHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 20332167705645672889998888999999 |
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>pfam06434 Aconitase_2_N Aconitate hydratase 2 N-terminus | Back alignment and domain information |
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Probab=94.15 E-value=0.12 Score=31.08 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=63.0 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEE------------EEEECCHHHHHHHCCCCCEEEEEECCCC Q ss_conf 9999899819988999467778673079998866761708------------9997647898885053552322331789 Q gi|254780451|r 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVR------------SVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896) Q Consensus 758 daA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVk------------AVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896) T Consensus 44 ~~I~~Lk~kg~~la~v-gdvvGtGSSRkSa~NsvLW~~g~diP~VPnkr~ggiv~G~kIAPIFfnT~edsGalPie~--- 119 (204) T pfam06434 44 EQIAELKKKGHPLAYV-GDVVGTGSSRKSATNSVLWHIGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIEA--- 119 (204) T ss_pred HHHHHHHHCCCCEEEE-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEECCEEEEECCCCCCEEEEE--- T ss_conf 9999998709978995-660256756421100256515688877872576686875634326884103368724686--- Q ss_pred CCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCE-EEEEEEEEECCHHHHHHHHCCCHHHHHH-HHH Q ss_conf 898881989743899726322589973899998189967-9999998738999999999098368988-872 Q gi|254780451|r 826 ISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTF-KCVPIICCIDTLDEINHLKNGGILQAVL-RQL 895 (896) Q Consensus 826 ~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~-~~~~~~~r~dt~~E~~~~~~GGiL~yvl-r~l 895 (896) T Consensus 120 -dv~~l~-tGd-vi~I~p~~g---------~i~~~~g~v~~~f~----l~p~~l~DevRAGGri~LIiGr~L 175 (204) T pfam06434 120 -DVSSLN-TGD-VITIYPYEG---------KITKEDGEVISTFE----LKPNTLLDEVRAGGRIPLIIGRGL 175 (204) T ss_pred -ECCCCC-CCC-EEEEECCCC---------EEECCCCCEEEEEE----CCCCCHHHHHHCCCCEEEEECHHH T ss_conf -403166-798-899965788---------69769997898876----277427888754883799973456 |
This family represents the N-terminal region of several bacterial Aconitate hydratase 2 proteins and is found in conjunction with pfam00330. |
>COG1679 Predicted aconitase [General function prediction only] | Back alignment and domain information |
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Probab=92.84 E-value=0.55 Score=26.31 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=109.0 Q ss_pred CEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCC-CCE------ECCCCEEEEEEECCCCCCCC Q ss_conf 11310368861798301320688764445201232034348999997077-514------11672899999767786443 Q gi|254780451|r 194 SVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC-PIS------MLLPEVVGFEVTGSLQEGVT 266 (896) Q Consensus 194 vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGq-p~~------~~vPevigv~L~G~L~~gVt 266 (896) T Consensus 137 ~AWaES---sAV~fANSVlGA--rTnReggp~aL---------~aAi~Gr~P~yG~hl~EnR~~~-~~v~ve~~~~~~-- 199 (403) T COG1679 137 LAWAES---SAVSFANSVLGA--RTNREGGPLAL---------AAAITGRTPLYGLHLDENRRPT-VIVEVEFPPKED-- 199 (403) T ss_pred EEEECC---CHHHHHHHHHHH--HCCCCCCHHHH---------HHHHHCCCCCCCCCCCCCCCCE-EEEEEECCCCCC-- T ss_conf 234201---112222232101--00566888999---------9999688852000233256604-999982477764-- Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEE--EECCCHHHHHHHHHCCCCHHHHHHHH Q ss_conf 6889999999841022121279996155001787563212000100372037--75199899999986399988999999 Q gi|254780451|r 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCG--FFPVDRGTIDYLRLSGRSNSRVDLVE 344 (896) Q Consensus 267 akDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~g--ifp~De~T~~YL~~tGR~~~~v~lve 344 (896) T Consensus 200 --d~~~~~lGy-----~~G~~~~d~IP~~~~~~~p~~d~lKalgAA~atsgavam~HvegvTPE~--------------- 257 (403) T COG1679 200 --DSEYGALGY-----LAGEAAGDGIPYFRLALFPSEDELKALGAAMATSGAVAMYHVEGVTPEA--------------- 257 (403) T ss_pred --HHHHHHHHH-----HHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------------- T ss_conf --156678889-----9987605898725068999989999988987504760489861778665--------------- Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC Q ss_conf 87464102367676678863069999803143012265665641367773011668766400110023210245788888 Q gi|254780451|r 345 AYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 (896) Q Consensus 345 ~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (896) T Consensus 258 ---------~~-~~~~d--~~e~i~i~~~d~~d-------------------a~~~-l---------------------~ 284 (403) T COG1679 258 ---------RA-LAFGD--KAEKIEIEREDIDD-------------------AWER-L---------------------N 284 (403) T ss_pred ---------CC-CCCCC--CCCEEEEEHHHHHH-------------------HHHH-H---------------------H T ss_conf ---------54-45356--67524630777899-------------------9998-6---------------------1 Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC Q ss_conf 75554457531046765459998778899988986498758673079701618999999985885777750530205532 Q gi|254780451|r 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896) Q Consensus 425 l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896) T Consensus 285 ~~~~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~-V~~sr~v~~~a~~~G~~~~le~~g~~vv---~ 353 (403) T COG1679 285 TADGEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLY-VTTSRAVYAQARKEGYLAKLEELGVKVV---S 353 (403) T ss_pred CCCCCCCEEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCCEE-EECCHHHHHHHHHHHHHHHHHHCCCEEE---C T ss_conf 578888879957-9998889999999997------415778898789-9807999988764206889997099890---4 Q ss_pred CCCC Q ss_conf 2421 Q gi|254780451|r 505 TTCI 508 (896) Q Consensus 505 g~Ci 508 (896) T Consensus 354 DtC~ 357 (403) T COG1679 354 DTCM 357 (403) T ss_pred CCEE T ss_conf 7314 |
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>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
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Probab=92.04 E-value=0.43 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.9 Q ss_pred CCHHHHHHHCC-CCCEEEEEECCCCCCHHHHCC Q ss_conf 64789888505-355232233178989888198 Q gi|254780451|r 802 ESFERIHRSNL-IGMGVIPFAFGKGISWKNLNI 833 (896) Q Consensus 802 ~SFeRIHrsNL-v~mGiLPL~F~~~~~~~~L~l 833 (896) T Consensus 470 ~~~~~~g~d~lPiCmAKTqYS~Sd--dp~llg~ 500 (554) T COG2759 470 KTFEKQGFDNLPICMAKTQYSFSD--DPSLLGA 500 (554) T ss_pred HHHHHHCCCCCCEEEECCCCCCCC--CHHHCCC T ss_conf 999981888775367637566568--9766399 |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 896 | aconitate hydratase [Candidatus Liberibacter asiaticus | ||
2b3x_A | 888 | Structure Of An Orthorhombic Crystal Form Of Human | 0.0 | |
2ipy_A | 888 | Crystal Structure Of Iron Regulatory Protein 1 In C | 0.0 | |
5acn_A | 754 | Structure Of Activated Aconitase. Formation Of The | 1e-156 | |
1aco_A | 754 | Crystal Structure Of Aconitase With Transaconitate | 1e-155 | |
1ami_A | 754 | Steric And Conformational Features Of The Aconitase | 1e-155 | |
1nis_A | 754 | Crystal Structure Of Aconitase With Trans-Aconitate | 1e-155 | |
1c97_A | 753 | S642a:isocitrate Complex Of Aconitase Length = 753 | 1e-154 | |
1b0j_A | 754 | Crystal Structure Of Aconitase With Isocitrate Leng | 1e-154 | |
1c96_A | 753 | S642a:citrate Complex Of Aconitase Length = 753 | 1e-154 | |
1b0m_A | 753 | Aconitase R644q:fluorocitrate Complex Length = 753 | 1e-154 | |
2pkp_A | 170 | Crystal Structure Of 3-Isopropylmalate Dehydratase | 5e-19 | |
1v7l_A | 163 | Structure Of 3-Isopropylmalate Isomerase Small Subu | 3e-14 | |
2hcu_A | 213 | Crystal Structure Of Smu.1381 (Or Leud) From Strept | 1e-11 | |
3q3w_A | 203 | Isopropylmalate Isomerase Small Subunit From Campyl | 1e-09 | |
3h5j_A | 171 | Leud_1-168 Small Subunit Of Isopropylmalate Isomera | 4e-05 | |
3h5h_A | 189 | Leud_1-186 Small Subunit Of Isopropylmalate Isomera | 5e-05 | |
3h5e_A | 159 | Leud_1-156 Small Subunit Of Isopropylmalate Isomera | 5e-05 | |
1l5j_A | 865 | Crystal Structure Of E. Coli Aconitase B. Length = | 2e-07 |
>gi|88192218|pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 | Back alignment and structure |
Score = 1105 bits (2859), Expect = 0.0, Method: Composition-based stats. Identities = 422/884 (47%), Positives = 586/884 (66%), Gaps = 24/884 (2%) Query: 22 VYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESE 81 +++L K E + RLP S++VLLE +R D V K+ I + W + E Sbjct: 19 KFFNLNKLEDS---RYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQ-HKNIE 74 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 V ++ +RV++QDFTGVPAVVD AAMRDA+ LGGDP+ INP+ P DLVIDHS+ VD++ Sbjct: 75 VPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRR 134 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 D++ +N+DLE++RN ER+ FLKWG ++F N R++PPG+GI HQ+NLEYL + V+ + Sbjct: 135 ADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVF----D 190 Query: 202 GENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261 + YPD+ VGTDSHTTMI+ LGILGWGVGGIEAEA MLG PISM+LP+V+G+ + G Sbjct: 191 QDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKP 250 Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 VT+TD+VLTIT+ LR+ GVV KFVEFFG G + +ADRATIANM PEYGAT FFP Sbjct: 251 HPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFP 310 Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID-YEKVAFTKKMKLDLGNVSPSVA 380 VD +I YL +GR ++ ++ Y + GM+R+ D + FT+ ++LDL V P + Sbjct: 311 VDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCS 370 Query: 381 GPRRPESRLSLSEVPSSFVTEM--------NEYYKKSHTLDEKYPVKGCDFHLKHGDVAI 432 GP+RP+ ++++S++ F + + + + H + + +F L HG V I Sbjct: 371 GPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVI 430 Query: 433 ASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYL 492 A+ITSCTNT NPSVM+GAGLLA+ AV AGL P++KTS +PGS V YL ++G++ YL Sbjct: 431 AAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYL 490 Query: 493 EALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYL 552 LGF +VG+GC TCIGNSG L + + E I Q LV GVLSGNRNFEGR+ P+ ANYL Sbjct: 491 SQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYL 550 Query: 553 LSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKK 612 SPPLV+AYA+AG +R + K+P+G + +G V+L+DIWP EIQ+ +YV ++K+ Sbjct: 551 ASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKE 610 Query: 613 KYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLL 672 Y + + SW + P + + W+ KSTY+++PP+FE ++ + I A +L L Sbjct: 611 VYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNL 670 Query: 673 GDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICN 732 GD +TTDHISPAG+I S AA YL RG+ ++FN +G+RRGN VM RGTF+NIR+ N Sbjct: 671 GDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLN 730 Query: 733 YMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTR 792 L K+ TIH PS E L ++DAA RY+ +PL+V AG EYG GSSRDWAAKG Sbjct: 731 RFL---NKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPF 787 Query: 793 LLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQE 852 LLG+++V+AES+ERIHRSNL+GMGVIP + G + L + G E I + + P+ + Sbjct: 788 LLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMK 847 Query: 853 STLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 +++ T K + DT E+ + NGGIL ++R+++ Sbjct: 848 VQVKLD----TGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887 |
>gi|126030781|pdb|2IPY|A Chain A, Crystal Structure Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire-Rna Length = 888 | Back alignment and structure |
Score = 1076 bits (2783), Expect = 0.0, Method: Composition-based stats. Identities = 427/901 (47%), Positives = 592/901 (65%), Gaps = 25/901 (2%) Query: 6 NSFNCRSI-LSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQ 64 N F + L +++L K + RLP S++VLLE +R D V KE Sbjct: 2 NPFAYLAEPLDPAQPGKKFFNLNKLD---YSRYGRLPFSIRVLLEAAVRNCDKFLVKKED 58 Query: 65 IHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLV 124 I + W + + EV ++ +RV++QDFTGVP+VVD AAMRDA+ LGGDP+ INP+ Sbjct: 59 IENILNWNVTQ-HMNIEVPFKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPIC 117 Query: 125 PVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICH 184 PVDLVIDHS+ VD++ D++ +N+DLE++RN ER+ FLKWG K+F+N R++PPG+GI H Sbjct: 118 PVDLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIH 177 Query: 185 QINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCP 244 Q+NLEYL + V+ + + YPD+ VGTDSHTTMI+ LG+LGWGVGGIEAEA MLG P Sbjct: 178 QVNLEYLARVVF----DQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQP 233 Query: 245 ISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRA 304 ISM+LP+V+G+ + G VT+TD+VLTIT+ LR+ GVV KFVEFFG G + +ADRA Sbjct: 234 ISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRA 293 Query: 305 TIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID-YEKVA 363 TIANM PEYGAT FFPVD +I YL +GR S+V + Y + GM+R+ D + Sbjct: 294 TIANMCPEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPD 353 Query: 364 FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM--------NEYYKKSHTLDEK 415 FT+ ++LDL V P +GP+RP+ ++++S++ F + + + H + Sbjct: 354 FTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKT 413 Query: 416 YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPG 475 + +F L HG V IA+ITS TNT NPSVM+GAGLLA+ AV AGL KP+VKTS +PG Sbjct: 414 FIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPG 473 Query: 476 SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSG 535 S V YL ++G++ YL LGF +VG+G T IGNSG L + + E I Q LV GVLSG Sbjct: 474 SGVVTYYLRESGVMPYLSQLGFDVVGYGSMTSIGNSGPLPEPVVEAITQGDLVAVGVLSG 533 Query: 536 NRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDS 595 NRNFEGR+ P+ ANYL SPPLV+AYA+AG +R + K+P+G + +G V+LRDIWP Sbjct: 534 NRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTRE 593 Query: 596 EIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISK 655 EIQ+ +YV ++ + Y + ++SW + P + Y+W+ KSTY+++PP+FE ++ Sbjct: 594 EIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTL 653 Query: 656 HIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRG 715 + I A +L LGD +TTDHISPAG+I S AA YL RG+ ++FN +G+RRG Sbjct: 654 DLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRG 713 Query: 716 NHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAG 775 N +M RGTF+NIR+ N L K+ TIH PS E L ++DAA RY+ + PL+V AG Sbjct: 714 NDAIMARGTFANIRLLNRFL---NKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAG 770 Query: 776 VEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKG 835 EYG+GSSRDWAAKG LLG+++V+AES+ERIHRSNL+GMGVIP + G + +L + G Sbjct: 771 KEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTG 830 Query: 836 DEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 E I + ++PR +++ T K + DT E+ + NGGIL ++R++ Sbjct: 831 RERYTIIIPENLTPRMHVQVKLD----TGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 886 Query: 896 S 896 + Sbjct: 887 A 887 |
>gi|157837014|pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 | Back alignment and structure |
Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 209/875 (23%), Positives = 346/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 61 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 62 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 110 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 111 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 151 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 152 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 210 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 211 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 270 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 271 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDPGCHYDQVIEINLSELKPHIN 323 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 324 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 360 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 361 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 417 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 418 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 470 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 471 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 522 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 523 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 568 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 569 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 596 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG GSSR+ +A R LG Sbjct: 597 IENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRHLGG 656 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLKCI 714 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 715 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 748 |
>gi|157829802|pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 | Back alignment and structure |
Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 210/875 (24%), Positives = 347/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 61 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 62 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 110 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 111 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 151 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 152 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 210 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 211 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 270 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 271 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDSGCHYDQLIEINLSELKPHIN 323 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 324 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 360 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 361 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 417 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 418 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 470 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 471 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 522 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 523 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 568 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 569 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 596 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG GSSR+ +A R LG Sbjct: 597 SENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGG 656 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + T Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLTCI 714 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 715 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 748 |
>gi|157829964|pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 | Back alignment and structure |
Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 210/875 (24%), Positives = 347/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 61 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 62 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 110 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 111 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 151 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 152 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 210 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 211 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 270 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 271 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDSGCHYDQLIEINLSELKPHIN 323 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 324 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 360 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 361 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 417 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 418 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 470 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 471 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 522 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 523 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 568 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 569 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 596 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG GSSR+ +A R LG Sbjct: 597 SENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGG 656 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + T Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLTCI 714 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 715 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 748 |
>gi|157832135|pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 | Back alignment and structure |
Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 210/875 (24%), Positives = 346/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 61 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 62 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 110 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 111 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 151 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 152 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 210 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 211 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 270 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 271 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDSGCHYDQLIEINLSELKPHIN 323 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 324 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 360 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 361 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 417 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 418 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 470 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 471 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 522 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 523 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 568 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 569 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 596 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG GSSR+ A R LG Sbjct: 597 SENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHRALEPRFLGG 656 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + T Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLTCI 714 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 715 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 748 |
>gi|5821964|pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 | Back alignment and structure |
Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 208/875 (23%), Positives = 346/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 4 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 60 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 61 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 109 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 110 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 150 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 151 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 209 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 210 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 269 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 270 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDPGCHYDQVIEINLSELKPHIN 322 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 323 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 359 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 360 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 416 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 417 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 469 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 470 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 521 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 522 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 567 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 568 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 595 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG G+SR+ +A R LG Sbjct: 596 IENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 655 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + Sbjct: 656 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLKCI 713 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 714 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 747 |
>gi|6729859|pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 | Back alignment and structure |
Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 208/875 (23%), Positives = 346/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 61 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 62 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 110 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 111 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 151 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 152 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 210 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 211 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 270 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 271 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDPGCHYDQVIEINLSELKPHIN 323 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 324 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 360 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 361 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 417 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 418 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 470 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 471 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 522 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 523 DSS---------GQRVDVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 568 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 569 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 596 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG G+SR+ +A R LG Sbjct: 597 IENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 656 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + Sbjct: 657 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLKCI 714 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 715 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 748 |
>gi|5821963|pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 | Back alignment and structure |
Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 208/875 (23%), Positives = 346/875 (39%), Gaps = 138/875 (15%) Query: 24 YSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG--TVESE 81 ++ E + L ++ ++ + L R T++++ ++ + N+ ++ Sbjct: 4 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNR---PLTLSEKIVYGHLDDPANQEIERGKTY 60 Query: 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGN 141 + R RV MQD T A++ + G P+ VP + DH + G Sbjct: 61 LRLRPDRVAMQDATAQMAMLQFIS--------SGLPKV---AVPSTIHCDHLIEAQLGGE 109 Query: 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 KD + R KD+ N+E Y FL + PG+GI HQI L Sbjct: 110 KD-LRRAKDI----NQEVYNFLATA-GAKYGVGFWRPGSGIIHQIIL------------- 150 Query: 202 GENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 EN AYP +GTDSHT LG + GVGG +A M G P + P+V+G ++TGS Sbjct: 151 -ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGS 209 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 L + D++L + +L +G VE+ G G +S+ ATI NM E GAT F Sbjct: 210 LSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVF 269 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P + YL +GR++ E + + + ++++L + P + Sbjct: 270 PYNHRMKKYLSKTGRADIANLADE-------FKDHLVPDPGCHYDQVIEINLSELKPHIN 322 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 GP P+ ++EV S E D+ + I SCTN Sbjct: 323 GPFTPDLAHPVAEVGSVAEKEGWPL-----------------------DIRVGLIGSCTN 359 Query: 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLV 500 + M + +A+ A+ GLK K + + PGS+ + + G + L +G ++ Sbjct: 360 SS-YEDMGRSAAVAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVL 416 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVV 559 C CI G ++ + + ++ V S NRNF GR + E ++ SP +V Sbjct: 417 ANACGPCI---GQWDRKDIKKGEKNTI----VTSYNRNFTGRNDANPETHAFVTSPEIVT 469 Query: 560 AYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFK 619 A A+AG ++ N D + + G L P E+ + Y K Sbjct: 470 ALAIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAEFDP-----GQDTYQHPPK 521 Query: 620 GDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTD 679 S + S ++ F+ D+ +IL + K TTD Sbjct: 522 DSS---------GQRVAVSPTSQRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTD 567 Query: 680 HISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEG 739 HIS AG +L+ RG + N N ++G Sbjct: 568 HISAAG---------PWLKFRGHLDNISN-----------------------NLLIGAIN 595 Query: 740 KKGGYT---IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 + + ++E + D A YK + VV YG G+SR+ +A R LG Sbjct: 596 IENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGG 655 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 R++I +SF RIH +NL G++P F + I + + I+ LK +P + Sbjct: 656 RAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKPLKCI 713 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAV 891 I + +GT + + ++ +I + G L + Sbjct: 714 IKHPNGTQETI-LLNHTFNETQIEWFRAGSALNRM 747 |