Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
112
hypothetical protein CLIBASIA_01980 [Candidatus Liberib
PRK05684
313
flgJ peptidoglycan hydrolase; Validated
99.9
PRK12709
318
flgJ peptidoglycan hydrolase; Provisional
99.89
TIGR02541
332
flagell_FlgJ flagellar rod assembly protein/muramidase
99.89
PRK12712
344
flgJ peptidoglycan hydrolase; Provisional
99.88
PRK12710
291
flgJ peptidoglycan hydrolase; Provisional
99.88
PRK12713
339
flgJ peptidoglycan hydrolase; Provisional
99.87
PRK12711
392
flgJ peptidoglycan hydrolase; Reviewed
99.84
PRK12790 115
chemotactic signal-response protein CheL; Provisional
99.83
COG3951 166
Rod binding protein [Cell envelope biogenesis, outer me
99.82
PRK12708 134
flgJ peptidoglycan hydrolase; Reviewed
99.77
pfam10135 49
Rod-binding Rod binding protein. Members of this family
99.0
>PRK05684 flgJ peptidoglycan hydrolase; Validated
Back Show alignment and domain information
Probab=99.90 E-value=1.1e-23 Score=149.58 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=75.3
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 544323120789999987022855479999999999999999999951021--123357533368999999999999998
Q gi|254780509|r 22 ISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEET--VKSLGGGFNGDFWQEILAENISDVIVK 99 (112)
Q Consensus 22 is~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~--~~~lggg~a~d~~~sMl~ee~a~~iAk 99 (112)
T Consensus 5 ~~~~a~D~~~L~~Lk~-~a~~d~~~al~~vA~QFEalF~q~mlKsMR~A~~~~~d~l~~s~~~~~y~~M~DqQla~~ls~ 83 (313)
T PRK05684 5 LSGAALDLQSLNSLKA-KAGKDPAANLRKVAQQFEGIFVQMMLKSMRDANPVFKDGLMNSQQTKLYTSMYDQQIAQQLSA 83 (313)
T ss_pred HHHHHCCHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 0022218788999998-854292999999999999999999999998445523588878806779999999999999860
Q ss_pred CCCCCCC
Q ss_conf 0798756
Q gi|254780509|r 100 QQRITLD 106 (112)
Q Consensus 100 ~ggiGL~ 106 (112)
T Consensus 84 ~~glGla 90 (313)
T PRK05684 84 GGGLGLA 90 (313)
T ss_pred CCCCCHH
T ss_conf 7998499
>PRK12709 flgJ peptidoglycan hydrolase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=2.1e-23 Score=148.20 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=75.0
Q ss_pred HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44323120789999987022855479999999999999999999951021123357533368999999999999998079
Q gi|254780509|r 23 SQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQR 102 (112)
Q Consensus 23 s~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~lggg~a~d~~~sMl~ee~a~~iAk~gg 102 (112)
T Consensus 12 ~~~a~D~~~L~~Lk~-~a~~~~~~al~~vA~QFEalF~qmmlKsMR~a~~~~~l~~s~~~~~y~~M~DqQla~~ls~~-G 89 (318)
T PRK12709 12 QRFALDVQGFDALRA-QAKASPQAGAKMVAGQFDAMFTQMMLKSMRDATPSDGLFDSHTSKMYTSMLDQQLAQQMSSK-G 89 (318)
T ss_pred HHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 677745776999999-87419399999999999999999999999846767888787067899999999999998537-8
Q ss_pred CCCC
Q ss_conf 8756
Q gi|254780509|r 103 ITLD 106 (112)
Q Consensus 103 iGL~ 106 (112)
T Consensus 90 ~Gla 93 (318)
T PRK12709 90 IGVA 93 (318)
T ss_pred CCHH
T ss_conf 7799
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377 The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring
Back Show alignment and domain information
Probab=99.89 E-value=2.5e-23 Score=147.75 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=72.1
Q ss_pred HHHCCHHHHHHHHCCCCHH--HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3120789999987022855--4799--999999999999999999510211233--575333689999999999999980
Q gi|254780509|r 27 SSFQSFLQLKDVQEACDKS--KSVP--EMTQKLQGIMFQYFIKSILPEETVKSL--GGGFNGDFWQEILAENISDVIVKQ 100 (112)
Q Consensus 27 ~s~q~~~~Lk~~~~~~~~~--~~l~--~~a~~fEa~fl~~~lksmr~~~~~~~l--ggg~a~d~~~sMl~ee~a~~iAk~ 100 (112)
T Consensus 3 ~D~~~L~~Lk~-kA~~dP~dG~~~~~~~~ArQFEalF~~mMLKsMReAt~k~glni~~S~~~~~y~~m~DqQ~a~~L~~~ 81 (332)
T TIGR02541 3 IDAQSLDELKA-KAVKDPKDGEAAKLTEAARQFEALFLNMMLKSMREATPKDGLNIFDSQQTRFYQQMLDQQLAQQLSAR 81 (332)
T ss_pred CCHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 16467999998-85028810799886688889999998624455440478887653255316788635489999998458
Q ss_pred CCCCCC
Q ss_conf 798756
Q gi|254780509|r 101 QRITLD 106 (112)
Q Consensus 101 ggiGL~ 106 (112)
T Consensus 82 ~GiGLA 87 (332)
T TIGR02541 82 KGIGLA 87 (332)
T ss_pred CCCCHH
T ss_conf 997689
; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
>PRK12712 flgJ peptidoglycan hydrolase; Provisional
Back Show alignment and domain information
Probab=99.88 E-value=1.2e-22 Score=143.93 Aligned_cols=92 Identities=12% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 61135543336887544323120789999987022855479999999999999999999951021123357533368999
Q gi|254780509|r 8 NISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQE 87 (112)
Q Consensus 8 ~is~~~~M~gnla~is~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~lggg~a~d~~~s 87 (112)
T Consensus 5 ~~~~~~dls~------~~a~D~~~l~~Lk~~a~~~~~~~al~~va~qFEalF~q~mlKsMR~a~~~~~~~~s~~~~~y~~ 78 (344)
T PRK12712 5 TLSAQADLSQ------RFALDTQGFEALKHSARGGADAGTLQAAARQFEAVFTQMVLKSMRDATPQDGLFDNEQSKLYMS 78 (344)
T ss_pred CCCCCCCHHH------HHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 8786433034------5562677799999998539817899999999999999999999984677788878716789999
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999980798756
Q gi|254780509|r 88 ILAENISDVIVKQQRITLD 106 (112)
Q Consensus 88 Ml~ee~a~~iAk~ggiGL~ 106 (112)
T Consensus 79 m~DqQla~~ls~~-G~GLa 96 (344)
T PRK12712 79 MMDQQLAQQMSSR-GIGLA 96 (344)
T ss_pred HHHHHHHHHHHHC-CCCHH
T ss_conf 9999999998546-88899
>PRK12710 flgJ peptidoglycan hydrolase; Provisional
Back Show alignment and domain information
Probab=99.88 E-value=1.5e-22 Score=143.53 Aligned_cols=82 Identities=27% Similarity=0.376 Sum_probs=72.7
Q ss_pred HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 432312078999998702285547999999999999999999995102---11233575333689999999999999980
Q gi|254780509|r 24 QDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE---TVKSLGGGFNGDFWQEILAENISDVIVKQ 100 (112)
Q Consensus 24 ~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~---~~~~lggg~a~d~~~sMl~ee~a~~iAk~ 100 (112)
T Consensus 6 ~~~~D~~~L~~Lk~-~A~~~~~~al~~vA~QFEalF~qmmLKsMR~A~~~~~~~~~~~s~~~~~y~~M~DqQlA~~ls~~ 84 (291)
T PRK12710 6 IATSDFQGLNELKI-QAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGQHFLDESSPFSGKNEATFQEMLDAQYASTIAES 84 (291)
T ss_pred HHHHCHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 00415778999999-86229499999999999999999999998724466766898786167899999899999998428
Q ss_pred CCCCCC
Q ss_conf 798756
Q gi|254780509|r 101 QRITLD 106 (112)
Q Consensus 101 ggiGL~ 106 (112)
T Consensus 85 ~g~GLA 90 (291)
T PRK12710 85 KGIGLA 90 (291)
T ss_pred CCCCHH
T ss_conf 998599
>PRK12713 flgJ peptidoglycan hydrolase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=3.3e-22 Score=141.58 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=73.2
Q ss_pred HHHHHHHHCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5443231207899999870-228554799999999999999999999510211233575333689999999999999980
Q gi|254780509|r 22 ISQDDSSFQSFLQLKDVQE-ACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQ 100 (112)
Q Consensus 22 is~~~~s~q~~~~Lk~~~~-~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~lggg~a~d~~~sMl~ee~a~~iAk~ 100 (112)
T Consensus 12 ~q~~a~D~~~L~~Lk~~A~~~~~~~~~~r~vA~QFEalF~q~mlKsMR~a~~~~~l~~s~~~~~y~~m~DqQla~~ls~~ 91 (339)
T PRK12713 12 VQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQFEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASP 91 (339)
T ss_pred CCHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 31323066569999999851952567799999999999999999999846777888887177899999999999998346
Q ss_pred CCCCCC
Q ss_conf 798756
Q gi|254780509|r 101 QRITLD 106 (112)
Q Consensus 101 ggiGL~ 106 (112)
T Consensus 92 -G~Gla 96 (339)
T PRK12713 92 -GIGLA 96 (339)
T ss_pred -CCCHH
T ss_conf -87799
>PRK12711 flgJ peptidoglycan hydrolase; Reviewed
Back Show alignment and domain information
Probab=99.84 E-value=2.2e-21 Score=137.12 Aligned_cols=65 Identities=12% Similarity=0.296 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 228554799999999999999999999510211233575333689999999999999980798756
Q gi|254780509|r 41 ACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLD 106 (112)
Q Consensus 41 ~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~lggg~a~d~~~sMl~ee~a~~iAk~ggiGL~ 106 (112)
T Consensus 14 ~kndpaaLr~VAqQFEslFvqMMLKSMRdAt~~d~l~ss~-sk~Y~~M~DQQLA~~LS~~gGiGLA 78 (392)
T PRK12711 14 TKADPAKIDKVSRQLEGQFAQMLVKSMRDASSGDPMFPGE-NQMFREMYDQQMAKALTDGKGLGLS 78 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 3299899999999999999999999997178889998624-4788889999999998658997199
>PRK12790 chemotactic signal-response protein CheL; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=1e-20 Score=133.46 Aligned_cols=68 Identities=9% Similarity=0.243 Sum_probs=62.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7022855479999999999999999999951021123-3575333689999999999999980798756
Q gi|254780509|r 39 QEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKS-LGGGFNGDFWQEILAENISDVIVKQQRITLD 106 (112)
Q Consensus 39 ~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~-lggg~a~d~~~sMl~ee~a~~iAk~ggiGL~ 106 (112)
T Consensus 31 kv~p~~~ak~k~tAqdFEA~FLn~Ml~~M~~gl~~dGpfG~g~ge~iwRSML~eeyak~iAkaGGIGIA 99 (115)
T PRK12790 31 KVSPQAQAKAKATATDFEAMFLNSMFSQMTSGLKGEGPFGDTVGTGVWRSMLTEQYSKSFAKAGGVGIS 99 (115)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 279367899999999999999999999998237778887898426689999999999999873886479
>COG3951 Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.82 E-value=2.4e-20 Score=131.49 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=73.6
Q ss_pred HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 323120789999987022855479999999999999999999951021123--357533368999999999999998079
Q gi|254780509|r 25 DDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKS--LGGGFNGDFWQEILAENISDVIVKQQR 102 (112)
Q Consensus 25 ~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~~~~~--lggg~a~d~~~sMl~ee~a~~iAk~gg 102 (112)
T Consensus 9 ~~~daq~l~~lk~-~a~~d~~~~l~~~ArqfE~vFv~mMLKSMR~Al~~~~~dl~~S~q~rlY~dmyDqqlaqqlss~~g 87 (166)
T COG3951 9 SAWDAQSLNELKQ-GARRDPAANLRQVARQFEGVFVQMMLKSMREALPKDGADLFNSQQTRLYTDMYDQQLAQQLSSQKG 87 (166)
T ss_pred HHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7999987788764-110181778999999999999999999999872530300104226889999999999999972588
Q ss_pred CCCC
Q ss_conf 8756
Q gi|254780509|r 103 ITLD 106 (112)
Q Consensus 103 iGL~ 106 (112)
T Consensus 88 ~GLA 91 (166)
T COG3951 88 LGLA 91 (166)
T ss_pred CCHH
T ss_conf 5489
>PRK12708 flgJ peptidoglycan hydrolase; Reviewed
Back Show alignment and domain information
Probab=99.77 E-value=5.8e-19 Score=123.90 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=70.6
Q ss_pred HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32312078999998702285547999999999999999999995102----11233575333689999999999999980
Q gi|254780509|r 25 DDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEE----TVKSLGGGFNGDFWQEILAENISDVIVKQ 100 (112)
Q Consensus 25 ~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fEa~fl~~~lksmr~~~----~~~~lggg~a~d~~~sMl~ee~a~~iAk~ 100 (112)
T Consensus 5 ~~~~yl~~~~~~~l~k~n~e~~al~~va~QFE~~F~q~mlksMR~A~dal~~eD~p~nS~~~~~YrdM~DqQLA~~LS~~ 84 (134)
T PRK12708 5 NSSPYLPGLNAGDLIPQNLEQGALKLAAQQFEAQFLQTVLKQMRSASDVMADEDDPFNSKNQGMYRDFYDAELASRLSSQ 84 (134)
T ss_pred CCCCHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77520102777778660453779999999999999999999999865430456885430578899999999999999866
Q ss_pred CCCCCC
Q ss_conf 798756
Q gi|254780509|r 101 QRITLD 106 (112)
Q Consensus 101 ggiGL~ 106 (112)
T Consensus 85 gg~GLA 90 (134)
T PRK12708 85 RSMGLA 90 (134)
T ss_pred CCCCHH
T ss_conf 896499
>pfam10135 Rod-binding Rod binding protein
Back Show alignment and domain information
Probab=99.00 E-value=2.2e-10 Score=77.04 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=37.1
Q ss_pred HHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9995102112335-75333689999999999999980798756
Q gi|254780509|r 65 KSILPEETVKSLG-GGFNGDFWQEILAENISDVIVKQQRITLD 106 (112)
Q Consensus 65 ksmr~~~~~~~lg-gg~a~d~~~sMl~ee~a~~iAk~ggiGL~ 106 (112)
T Consensus 1 ksMr~t~~~~~~~~~~~~~~~~~~m~d~q~a~~~a~~ggiGLA 43 (49)
T pfam10135 1 KSMRKAVPKDGLFGSGFAEDMFRSMLDQQLAKQLAKRGGIGLA 43 (49)
T ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9455358776887885399999999999999999876998699
Members of this family are involved in the assembly of the prokaryotic flagellar rod.
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch