Conserved Domains in CDD Database
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value Target 114
flagellar biosynthesis regulatory protein FlaF [Candida
PRK12793 115
PRK12793, flaF, flagellar biosynthesis regulatory prote
1e-33 pfam07309 113
pfam07309, FlaF, Flagellar protein FlaF
1e-25 COG5442 115
COG5442, FlaF, Flagellar biosynthesis regulator FlaF [C
5e-27 PRK12794 122
PRK12794, flaF, flagellar biosynthesis regulatory prote
2e-07
>gnl|CDD|183750 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF; Reviewed
Back Show alignment and domain information
Score = 136 bits (345), Expect = 1e-33
Identities = 52/110 (47%), Positives = 78/110 (70%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y E +++S R+RE DRSI LL A S++A+EAL++T R+W V I+DL S
Sbjct: 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGAYSREAIEALYFTRRLWTVLIEDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+N LP+E++ +LISIGLWVLKE +RIR+ +SN++ +I++ + +RDGLK
Sbjct: 66 PENALPEELRADLISIGLWVLKEADRIRQGESNNFAGLIEINTSIRDGLK 115
>gnl|CDD|148743 pfam07309, FlaF, Flagellar protein FlaF
Back Show alignment and domain information
Score = 110 bits (277), Expect = 1e-25
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
+ Y Q ++ R+RE L R+ + L A K+ ++A+EAL + ++W +F D
Sbjct: 3 QSAYARVAQSTATP-REREAQALARATARLQQARKAGAAGREALEALHFNRKLWTIFAAD 61
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L S DN LPQE++ NLIS+GL+VLK ++ ++ +I++ + DGL
Sbjct: 62 LASPDNPLPQELRANLISLGLFVLKHTSKVLAGPADDLDPLIEINRAIADGL 113
This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis. Length = 113
>gnl|CDD|35001 COG5442, FlaF, Flagellar biosynthesis regulator FlaF [Cell motility and secretion]
Back Show alignment and domain information
Score = 114 bits (287), Expect = 5e-27
Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 1 MRQYYHETIQESSIECRK-REHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
M Q+ + + E + K RE +L RSI+LL A +S++A+EAL++T RVW FI
Sbjct: 1 MYQFSYADVMEDGVASAKDRERQLLTRSIALLDAARAPGDDSREAIEALYFTRRVWTRFI 60
Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+DL S DN LP E++ NLISIG+WVL+E E IR+ +SN+++ +I++ I+RDGLK
Sbjct: 61 EDLGSPDNQLPMELRANLISIGIWVLRESEAIRQGESNNFEGLIEITQIIRDGLK 115
>gnl|CDD|183751 PRK12794, flaF, flagellar biosynthesis regulatory protein FlaF; Reviewed
Back Show alignment and domain information
Score = 49.9 bits (120), Expect = 2e-07
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
EAL + ++W +F D+ DN LP E++ + ++ L+V K ++ R +ID
Sbjct: 48 AEALHFNRKLWSIFASDVADPDNPLPIELRARIFNLSLFVQKHSSKVLRKP-EKLTPLID 106
Query: 105 VISIVRDGLK 114
+ + GL
Sbjct: 107 INRNIAAGLS 116
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability Target
114
flagellar biosynthesis regulatory protein FlaF [Candida
PRK12793 115
flaF flagellar biosynthesis regulatory protein FlaF; Re
100.0 pfam07309 113
FlaF Flagellar protein FlaF. This family consists of se
100.0 PRK12794 122
flaF flagellar biosynthesis regulatory protein FlaF; Re
100.0 COG5442 115
FlaF Flagellar biosynthesis regulator FlaF [Cell motili
100.0 pfam02561 122
FliS Flagellar protein FliS. FliS is coded for by the F
96.09 COG1516 132
FliS Flagellin-specific chaperone FliS [Cell motility a
93.33
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=2.1e-42 Score=270.91 Aligned_cols=114 Identities=45% Similarity=0.798 Sum_probs=110.9
Q ss_pred CHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 926-9999997223797999999999999999999836888399999999999999999999609889989899999999
Q gi|254780522|r 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 1 ~r~-~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 1 my~~sYae~~~ds~~~~Re~E~~al~r~~~~L~~a~~~~~~~~~~~eAl~~nrrlWt~~~~Dl~~~~N~LP~~LRa~lis 80 (115)
T PRK12793 1 MYQFSYAEVMEDSPASARERERQAFDRSIDLLEAARAKGAGSREAIEALLFTRRLWTTLIEDLGSPENALPEELRADLIS 80 (115)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 93035999987553483999999999999999999876999799999999999999999998579879999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999954784312799999999995159
Q gi|254780522|r 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 80 L~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
T Consensus 81 l~~fv~k~t~~v~~~~~~~~~~LIeIN~~I~~GLr 115 (115)
T PRK12793 81 IGIWVLKEADRIRQGESNNFAGLIEINTSIRDGLR 115 (115)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999985885343069999999985773
>pfam07309 FlaF Flagellar protein FlaF
Back Show alignment and domain information
Probab=100.00 E-value=1.8e-38 Score=247.69 Aligned_cols=111 Identities=35% Similarity=0.594 Sum_probs=106.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688839999999999999999999960988998989999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL~ 81 (114)
T Consensus 3 ~~AY~~~~~-~~~t~Re~E~~~l~~~~~~L~~A~~~~~~~~~~~~AL~~N~rLWt~~~~dl~~~~N~LP~eLRa~lisL~ 81 (113)
T pfam07309 3 QSAYARVAQ-STATPREREAQALARATARLQQARKAGAAGREALEALHFNRKLWTIFAADLASPDNPLPQELRANLISLG 81 (113)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 888998874-3379499999999999999999986786739999999999999999999864988999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999995478431279999999999515
Q gi|254780522|r 82 LWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 (114)
Q Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (114)
T Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (113)
T pfam07309 82 LFVLKHTSKVLAGPADDLDPLIEINRAIADGL 113 (113)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999998087544178999999988309
This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis.
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=4.3e-38 Score=245.43 Aligned_cols=111 Identities=27% Similarity=0.434 Sum_probs=103.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688-83999999999999999999996098899898999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~-~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL 80 (114)
T Consensus 5 ~~AY~~~~~~-t~tpR~~E~~~~~~~t~~L~~a~~~~~~~~~~l~~AL~~N~rLWt~~~~dl~~~~N~LP~~LRa~lisL 83 (122)
T PRK12794 5 AQAYARTAQP-TRTPREIEYQALAKATRQLQDAQSNGPDGFAALAEALHFNRKLWSIFASDVASPDNPLPIELRANIANL 83 (122)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999987620-379499999999999999999987387327999999999999999999986698799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999954784312799999999995159
Q gi|254780522|r 81 GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 81 ~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
T Consensus 84 ~~fv~~~t~~vl~~~-~~l~~LI~IN~~I~~GL~ 116 (122)
T PRK12794 84 SEFVLKQSSKVLRKP-EKLTPLIEINRNIAAGLS 116 (122)
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC
T ss_conf 999999999998586-031289999999997653
>COG5442 FlaF Flagellar biosynthesis regulator FlaF [Cell motility and secretion]
Back Show alignment and domain information
Probab=100.00 E-value=2.9e-33 Score=216.86 Aligned_cols=114 Identities=46% Similarity=0.829 Sum_probs=110.6
Q ss_pred CHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 926-9999997223797999999999999999999836888399999999999999999999609889989899999999
Q gi|254780522|r 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 1 ~r~-~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 1 myqf~yadvm~~~va~akdRer~~ltRsiall~aa~a~~~~sre~IeAl~ftrrvW~~fieDl~~pdNqLp~ELRAnlIS 80 (115)
T COG5442 1 MYQFSYADVMEDGVASAKDRERQLLTRSIALLDAARAPGDDSREAIEALYFTRRVWTRFIEDLGSPDNQLPMELRANLIS 80 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 95301999985113427899999998899999987655400899999999899999999998069622143999987899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999954784312799999999995159
Q gi|254780522|r 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 80 L~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
T Consensus 81 igiwvlre~e~Ir~~es~nfeglIeit~iIrdGL~ 115 (115)
T COG5442 81 IGIWVLRESEAIRQGESNNFEGLIEITQIIRDGLK 115 (115)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999888999985534253248989999985339
>pfam02561 FliS Flagellar protein FliS
Back Show alignment and domain information
Probab=96.09 E-value=0.11 Score=29.94 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 5 y~aY~~~~v~-tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~l~ka~~Ii~~L~~sLd~e---~GgeiA~nL~~ 80 (122)
T pfam02561 5 YQAYQQNAVN-TASPLELIIMLYDKAIKALVRAAEFIENEDIEKKNENISKAQNIITELRSTLDEE---KGGEIAQNLLA 80 (122)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHH
T ss_conf 9999998682-2999999999999999999999999885789999999999999999999750853---36399998999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
T Consensus 81 LY~~~~~~L~~An~~~d~~~l~ev~~~l~~lrea 114 (122)
T pfam02561 81 IYTYMNKRLVQANLKNDASKLDEVEALLRDLREA 114 (122)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988768999999999999999999
FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=93.33 E-value=0.64 Score=25.49 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 269999997223797999999999999999999836--888399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKS--LPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~--~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 7 ~~aY~qn~V-~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E---~Ggeia~nL~~ 82 (132)
T COG1516 7 YQAYQQNQV-NTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYE---KGGEIAQNLDA 82 (132)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH---HCCHHHHHHHH
T ss_conf 999998888-30889999999999999999999999980267999899999999999999753976---26639998999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
T Consensus 83 LY~y~~~rL~~ANl~nd~~~i~eV~~ll~~l~ea 116 (132)
T COG1516 83 LYDYMVRRLVQANLKNDASKIDEVIGLLRELREA 116 (132)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988616899999999999999999
Homologous Structures in PDB Database
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Original result of PSI-BLAST
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity Alignment graph Length
Definition
Probability Target 114
flagellar biosynthesis regulatory protein FlaF [Candida
1vh6_A 145
Flagellar protein FLIS; structural genomics, unknown fu
95.65 3iqc_A 131
FLIS, flagellar protein; chaperone, flagellum; 2.70A {H
92.11
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Back Hide alignment and structure
Probab=95.65 E-value=0.11 Score=28.81 Aligned_cols=105 Identities=9% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
+++|.++.-. +.+|-+.=-.+|..+...|..|.... .+..+..+++..-+.+-.-+..+|-. + .++-.+|.+
T Consensus 9 ~~aY~~~~v~-tasp~~Li~mLyd~ai~~l~~a~~ai~~~d~~~~~~~l~ka~~Ii~eL~~~Ld~-~----geiA~nL~~ 82 (145)
T 1vh6_A 9 YTAYQQNSVN-TATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNR-N----IELSASMGA 82 (145)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHTTHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-C----HHHHHHHHH
T ss_conf 9999986050-599999999999999999999999998579999999999999999998753226-8----189999999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-.|+.++. ...+..+.+.++..+.|=..|++|
T Consensus 83 lY~y~~~~L~~a~~~~d~~~l~~v~~il~~l~ea 116 (145)
T 1vh6_A 83 MYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDA 116 (145)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998758999999999999999999
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} PDB: 3k1i_A
Back Show alignment and structure
Probab=92.11 E-value=0.35 Score=25.73 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=76.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
+++|.++.- .+.+|-+.=..+|..+...|+.|.... .+..+..+++..-+..-+.+..-| +-.-..++=.||.+
T Consensus 12 ~~~Y~~~~v-~tasp~~Li~mLyd~~i~~l~~a~~ai~~~~~~~~~~~~~ka~~Ii~~L~~sL---d~e~GgeiA~nL~~ 87 (131)
T 3iqc_A 12 YQAYQHNRV-SVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNIL---DYEKGGEVAVYLTG 87 (131)
T ss_dssp CCCBCC------CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTB---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHH
T ss_conf 999998604-04999999999999999999999999985899999999999999999999766---86435388988999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-.|+.++. ...+..+.+.++..+.|=..+++|
T Consensus 88 LY~y~~~~L~~a~~~~d~~~l~ev~~il~~L~ea 121 (131)
T 3iqc_A 88 LYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 121 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998879999999999999999999
Homologous Domains in SCOP and MMDB Database
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability Target 114
flagellar biosynthesis regulatory protein FlaF [Candida
1vh6_A_ 145
Flagellar protein FLIS; structural genomics, unkno
91.77
>1vh6_A (A:) Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis}
Back Hide alignment and structure
Probab=91.77 E-value=0.9 Score=24.25 Aligned_cols=105 Identities=9% Similarity=0.131 Sum_probs=84.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
.++|.++.- .+.+|=+.=-.+|..+...|..|.... .+..+..++|..-+.+-+-|..-|-.. .++=.+|.+
T Consensus 9 ~~aY~~~~v-~tasp~~Li~mLyd~ai~~l~~a~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~~-----~eiA~~L~~ 82 (145)
T 1vh6_A 9 YTAYQQNSV-NTATPGELTLXLYNGCLKFIRLAAQAIENDDXERKNENLIKAQNIIQELNFTLNRN-----IELSASXGA 82 (145)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTTHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHH
T ss_conf 999998535-04999999999999999999999999985799999999999999999988652468-----089999999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-.|+.++. ...+..+.+.++..+.|=..+.+|
T Consensus 83 LY~y~~~~L~~A~~~~d~~~i~ev~~il~~L~ea 116 (145)
T 1vh6_A 83 XYDYXYRRLVQANIKNDTGXLAEVEGYVTDFRDA 116 (145)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998869999999999999999999