254780524
flagellar hook-associated protein FlgK
GeneID in NCBI database: | 8209519 | Locus tag: | CLIBASIA_02055 |
Protein GI in NCBI database: | 254780524 | Protein Accession: | YP_003064937.1 |
Gene range: | +(758295, 759737) | Protein Length: | 480aa |
Gene description: | flagellar hook-associated protein FlgK | ||
COG prediction: | [N] Flagellar hook-associated protein | ||
KEGG prediction: | flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK | ||
SEED prediction: | Flagellar hook-associated protein FlgK | ||
Pathway involved in KEGG: | Flagellar assembly [PATH:las02040] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | |||
315122285 | 481 | flagellar hook-associated protein FlgK [Candidatus Libe | 1 | 0.0 | |
222147590 | 484 | flagellar hook-associated protein FlgK [Agrobacterium v | 1 | 2e-94 | |
222084886 | 491 | flagellar hook-associated protein [Agrobacterium radiob | 1 | 4e-87 | |
163758033 | 487 | hypothetical protein HPDFL43_00370 [Hoeflea phototrophi | 1 | 6e-86 | |
86356331 | 495 | flagellar hook-associated protein FlgK [Rhizobium etli | 1 | 1e-85 | |
241203125 | 495 | flagellar hook-associated protein FlgK [Rhizobium legum | 1 | 4e-85 | |
325291963 | 492 | flagellar hook-associated protein FlgK [Agrobacterium s | 1 | 4e-85 | |
209547947 | 495 | flagellar hook-associated protein FlgK [Rhizobium legum | 1 | 5e-85 | |
241113583 | 486 | flagellar hook-associated protein FlgK [Rhizobium legum | 1 | 6e-85 | |
116250501 | 495 | flagellar hook-associated protein FlgK [Rhizobium legum | 1 | 8e-85 |
>gi|315122285|ref|YP_004062774.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 481 | Back alignment and organism information |
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Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/481 (69%), Positives = 397/481 (82%), Gaps = 1/481 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL AVFNKAQNI +NAS+QF +IV+NIEN+ NKNYVR+D +T + + V QRSEN+ Sbjct: 1 MSLSAVFNKAQNIFSNASEQFFTIVKNIENSGNKNYVRQDIITVNTGDMTVAVKQRSENQ 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 NMF+K+L A SSAIGQQRLL+SFE+LK++M A++ YNNSP+HY++KLRDSL YS N S Sbjct: 61 NMFEKLLDAKSSAIGQQRLLESFESLKDIMGAENKYNNSPSHYMAKLRDSLSVYSNNPST 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 DI GK +I +A +V N NTS++E+QKIRA ADKEI++E+S LR FLSELTVVND IKFK Sbjct: 121 DIFGKQIISDANALVYNLNTSSKEIQKIRAGADKEIDIEVSKLRGFLSELTVVNDQIKFK 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T +KHD H+ LD+RD LLQ ISE IGISTI+RNNND+++YTSDGTTLFETVPR+INFEKM Sbjct: 181 TVAKHDTHELLDKRDALLQNISEEIGISTIIRNNNDIIIYTSDGTTLFETVPRNINFEKM 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + Y+ TSES + IDGV VS +Q PKG+IKALL IRD+V+P+FQNQLDE++R LI Sbjct: 241 DLYSATSESKSVVIDGVKVSIPDQTHTAPKGRIKALLHIRDNVIPMFQNQLDEISRSLIS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 FSEKDP+AG S++V GLFIADG+KD NKL +G+SE I VNPQY+SNP FLRDGGSVSK Sbjct: 301 GFSEKDPVAGRSQDVLGLFIADGLKDPGNKLYKGMSEIIRVNPQYQSNPFFLRDGGSVSK 360 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 LWNVK A Y LINHYCDSFN F FD GI TNV+LLEYA+NSIGWLEKNRS SH Sbjct: 361 NHLWNVKGFAEYSGLINHYCDSFNAMFSFDSATGIGTNVSLLEYAKNSIGWLEKNRSTSH 420 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 D MK+QVVFNHISESYSNT GVNLQ+ELSFLIKVEQSYNISNKL+M ++ML TLLEG+ Sbjct: 421 DSRMKNQVVFNHISESYSNTTGVNLQDELSFLIKVEQSYNISNKLMMSINRMLNTLLEGI 480 Query: 480 K 480 K Sbjct: 481 K 481 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222147590|ref|YP_002548547.1| flagellar hook-associated protein FlgK [Agrobacterium vitis S4] Length = 484 | Back alignment and organism information |
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>gi|222084886|ref|YP_002543415.1| flagellar hook-associated protein [Agrobacterium radiobacter K84] Length = 491 | Back alignment and organism information |
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>gi|163758033|ref|ZP_02165121.1| hypothetical protein HPDFL43_00370 [Hoeflea phototrophica DFL-43] Length = 487 | Back alignment and organism information |
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>gi|86356331|ref|YP_468223.1| flagellar hook-associated protein FlgK [Rhizobium etli CFN 42] Length = 495 | Back alignment and organism information |
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>gi|241203125|ref|YP_002974221.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 495 | Back alignment and organism information |
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>gi|325291963|ref|YP_004277827.1| flagellar hook-associated protein FlgK [Agrobacterium sp. H13-3] Length = 492 | Back alignment and organism information |
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>gi|209547947|ref|YP_002279864.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 | Back alignment and organism information |
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>gi|241113583|ref|YP_002973418.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 | Back alignment and organism information |
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>gi|116250501|ref|YP_766339.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. viciae 3841] Length = 495 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
PRK07521 | 483 | PRK07521, flgK, flagellar hook-associated protein FlgK; | 1e-109 | |
COG1256 | 552 | COG1256, FlgK, Flagellar hook-associated protein [Cell | 7e-43 | |
TIGR02492 | 322 | TIGR02492, flgK_ends, flagellar hook-associated protein | 2e-33 | |
PRK06665 | 627 | PRK06665, flgK, flagellar hook-associated protein FlgK; | 2e-10 | |
PRK06945 | 651 | PRK06945, flgK, flagellar hook-associated protein FlgK; | 6e-08 | |
PRK08147 | 547 | PRK08147, flgK, flagellar hook-associated protein FlgK; | 1e-06 | |
PRK05683 | 676 | PRK05683, flgK, flagellar hook-associated protein FlgK; | 2e-04 | |
PRK08871 | 626 | PRK08871, flgK, flagellar hook-associated protein FlgK; | 4e-04 | |
PRK07739 | 507 | PRK07739, flgK, flagellar hook-associated protein FlgK; | 4e-17 | |
PRK08471 | 613 | PRK08471, flgK, flagellar hook-associated protein FlgK; | 1e-04 | |
PRK12714 | 624 | PRK12714, flgK, flagellar hook-associated protein FlgK; | 3e-04 |
>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK | Back alignment and domain information |
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>gnl|CDD|180650 PRK06665, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|183697 PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
PRK07521 | 482 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK07739 | 500 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK08147 | 547 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK07191 | 456 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK06665 | 628 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
COG1256 | 552 | FlgK Flagellar hook-associated protein [Cell motility a | 100.0 | |
PRK08471 | 612 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
TIGR02492 | 495 | flgK_ends flagellar hook-associated protein FlgK; Inter | 100.0 | |
PRK12714 | 624 | flgK flagellar hook-associated protein FlgK; Provisiona | 100.0 | |
PRK12715 | 649 | flgK flagellar hook-associated protein FlgK; Provisiona | 100.0 | |
PRK06945 | 649 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK08871 | 626 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK05683 | 676 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK06799 | 431 | flgK flagellar hook-associated protein FlgK; Validated | 100.0 | |
PRK06803 | 398 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
COG1749 | 423 | FlgE Flagellar hook protein FlgE [Cell motility and sec | 100.0 | |
PRK12637 | 473 | flgE flagellar hook protein FlgE; Provisional | 100.0 | |
PRK05682 | 414 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
TIGR02488 | 263 | flgG_G_neg flagellar basal-body rod protein FlgG; Inter | 100.0 | |
PRK08425 | 716 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
PRK05841 | 605 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
TIGR02489 | 877 | flgE_epsilon flagellar hook protein FlgE; InterPro: IPR | 100.0 | |
PRK12636 | 263 | flgG flagellar basal body rod protein FlgG; Provisional | 100.0 | |
COG4786 | 265 | FlgG Flagellar basal body rod protein [Cell motility an | 100.0 | |
PRK12691 | 262 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12693 | 261 | flgG flagellar basal body rod protein FlgG; Provisional | 100.0 | |
PRK12816 | 264 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12694 | 260 | flgG flagellar basal body rod protein FlgG; Reviewed | 99.98 | |
PRK12692 | 262 | flgG flagellar basal body rod protein FlgG; Reviewed | 99.97 | |
PRK12817 | 261 | flgG flagellar basal body rod protein FlgG; Reviewed | 99.96 | |
PRK12640 | 246 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.96 | |
PRK12689 | 253 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.95 | |
PRK12642 | 241 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.95 | |
PRK12641 | 252 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.94 | |
PRK12819 | 257 | flgG flagellar basal body rod protein FlgG; Reviewed | 99.94 | |
PRK12690 | 237 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.94 | |
TIGR02490 | 254 | flgF flagellar basal-body rod protein FlgF; InterPro: I | 99.57 | |
PRK05681 | 139 | flgC flagellar basal body rod protein FlgC; Reviewed | 99.22 | |
PRK12632 | 130 | flgC flagellar basal body rod protein FlgC; Provisional | 99.09 | |
TIGR01395 | 147 | FlgC flagellar basal-body rod protein FlgC; InterPro: I | 99.0 | |
PRK12782 | 138 | flgC flagellar basal body rod protein FlgC; Reviewed | 98.99 | |
PRK12631 | 138 | flgC flagellar basal body rod protein FlgC; Provisional | 98.96 | |
PRK12628 | 140 | flgC flagellar basal body rod protein FlgC; Provisional | 98.95 | |
COG1558 | 137 | FlgC Flagellar basal body rod protein [Cell motility an | 98.92 | |
PRK12630 | 143 | flgC flagellar basal body rod protein FlgC; Provisional | 98.92 | |
PRK12629 | 135 | flgC flagellar basal body rod protein FlgC; Provisional | 98.89 | |
PRK06802 | 141 | flgC flagellar basal body rod protein FlgC; Reviewed | 98.88 | |
COG4787 | 251 | FlgF Flagellar basal body rod protein [Cell motility an | 97.99 | |
COG1344 | 360 | FlgL Flagellin and related hook-associated proteins [Ce | 96.37 | |
PRK12804 | 307 | flagellin; Provisional | 96.12 | |
PRK12802 | 282 | flagellin; Provisional | 95.32 | |
PRK12807 | 287 | flagellin; Provisional | 95.14 | |
COG1815 | 133 | FlgB Flagellar basal body protein [Cell motility and se | 94.99 | |
PRK08869 | 377 | flagellin; Reviewed | 93.44 | |
PRK08412 | 777 | flgL flagellar hook-associated protein FlgL; Validated | 93.44 | |
PRK06819 | 371 | flagellin; Validated | 92.6 | |
PRK08870 | 403 | flgL flagellar hook-associated protein FlgL; Reviewed | 91.48 | |
PRK07701 | 301 | flgL flagellar hook-associated protein FlgL; Validated | 90.56 | |
PRK12818 | 255 | flgG flagellar basal body rod protein FlgG; Reviewed | 99.95 | |
TIGR03506 | 231 | FlgEFG_subfam fagellar hook-basal body proteins. This m | 99.92 | |
PRK12643 | 209 | flgF flagellar basal body rod protein FlgF; Reviewed | 99.4 | |
COG4787 | 251 | FlgF Flagellar basal body rod protein [Cell motility an | 97.56 | |
pfam06429 | 39 | DUF1078 Domain of unknown function (DUF1078). This fami | 99.19 | |
PRK12627 | 128 | flgB flagellar basal body rod protein FlgB; Provisional | 96.14 | |
PRK06003 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 95.95 | |
PRK06004 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 95.63 | |
PRK05680 | 137 | flgB flagellar basal body rod protein FlgB; Reviewed | 95.38 | |
PRK12623 | 131 | flgB flagellar basal body rod protein FlgB; Provisional | 94.78 | |
PRK12622 | 135 | flgB flagellar basal body rod protein FlgB; Provisional | 94.52 | |
PRK12624 | 143 | flgB flagellar basal body rod protein FlgB; Provisional | 94.2 | |
PRK05681 | 139 | flgC flagellar basal body rod protein FlgC; Reviewed | 99.17 | |
PRK12632 | 130 | flgC flagellar basal body rod protein FlgC; Provisional | 99.02 | |
PRK12631 | 138 | flgC flagellar basal body rod protein FlgC; Provisional | 98.89 | |
PRK06802 | 141 | flgC flagellar basal body rod protein FlgC; Reviewed | 98.84 | |
PRK12782 | 138 | flgC flagellar basal body rod protein FlgC; Reviewed | 98.84 | |
PRK12629 | 135 | flgC flagellar basal body rod protein FlgC; Provisional | 98.83 | |
PRK12630 | 143 | flgC flagellar basal body rod protein FlgC; Provisional | 98.8 | |
PRK12628 | 140 | flgC flagellar basal body rod protein FlgC; Provisional | 98.75 | |
pfam00460 | 31 | Flg_bb_rod Flagella basal body rod protein. | 98.71 | |
COG1558 | 137 | FlgC Flagellar basal body rod protein [Cell motility an | 98.69 | |
PRK12622 | 135 | flgB flagellar basal body rod protein FlgB; Provisional | 98.55 | |
PRK12621 | 136 | flgB flagellar basal body rod protein FlgB; Provisional | 98.48 | |
PRK12619 | 130 | flgB flagellar basal body rod protein FlgB; Provisional | 98.45 | |
TIGR01395 | 147 | FlgC flagellar basal-body rod protein FlgC; InterPro: I | 98.44 | |
PRK12625 | 132 | flgB flagellar basal body rod protein FlgB; Provisional | 98.39 | |
PRK12624 | 143 | flgB flagellar basal body rod protein FlgB; Provisional | 98.39 | |
PRK05680 | 137 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.35 | |
PRK12623 | 131 | flgB flagellar basal body rod protein FlgB; Provisional | 98.35 | |
COG1815 | 133 | FlgB Flagellar basal body protein [Cell motility and se | 98.33 | |
PRK12620 | 132 | flgB flagellar basal body rod protein FlgB; Provisional | 98.32 | |
PRK12685 | 116 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.22 | |
PRK12626 | 162 | flgB flagellar basal body rod protein FlgB; Provisional | 98.16 | |
PRK06003 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.13 | |
PRK06797 | 135 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.02 | |
PRK07182 | 148 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.01 | |
PRK06004 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 97.95 | |
PRK12627 | 128 | flgB flagellar basal body rod protein FlgB; Provisional | 97.68 | |
TIGR01396 | 134 | FlgB flagellar basal-body rod protein FlgB; InterPro: I | 94.39 |
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK07739 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08147 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK07191 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK06665 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08471 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway | Back alignment and domain information |
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>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>PRK06945 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08871 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK05683 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK06799 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK06803 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion] | Back alignment and domain information |
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>PRK12637 flgE flagellar hook protein FlgE; Provisional | Back alignment and domain information |
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>PRK05682 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes | Back alignment and domain information |
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>PRK08425 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>PRK05841 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter) | Back alignment and domain information |
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>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria | Back alignment and domain information |
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>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella | Back alignment and domain information |
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>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion] | Back alignment and domain information |
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>PRK12804 flagellin; Provisional | Back alignment and domain information |
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>PRK12802 flagellin; Provisional | Back alignment and domain information |
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>PRK12807 flagellin; Provisional | Back alignment and domain information |
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>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08869 flagellin; Reviewed | Back alignment and domain information |
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>PRK08412 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
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>PRK06819 flagellin; Validated | Back alignment and domain information |
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>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed | Back alignment and domain information |
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>PRK07701 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
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>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins | Back alignment and domain information |
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>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>pfam06429 DUF1078 Domain of unknown function (DUF1078) | Back alignment and domain information |
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>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>pfam00460 Flg_bb_rod Flagella basal body rod protein | Back alignment and domain information |
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>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella | Back alignment and domain information |
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>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
3a69_A | 402 | Atomic Model Of The Bacterial Flagellar Hook Based | 3e-21 | |
2d4y_A | 463 | Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) | 7e-20 | |
2d4y_A | 463 | Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) | 1e-05 |
>gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 | Back alignment and structure |
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 49 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N A + Sbjct: 96 NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 143 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + ++ + T ++ T++++ + T Sbjct: 144 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D ++ + L ++ S + Sbjct: 204 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 244 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 245 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 291 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 349 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 |
>gi|119389100|pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) Length = 463 | Back alignment and structure |
>gi|119389100|pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) Length = 463 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
2d4y_A | 463 | HAP1, flagellar HOOK-associated protein 1; multi-domain | 4e-19 | |
2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carr | 1e-04 |
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} Length = 463 | Back alignment and structure |
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Score = 91.5 bits (226), Expect = 4e-19 Identities = 40/257 (15%), Positives = 102/257 (39%), Gaps = 5/257 (1%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +++ A + + G + + +++ +S + + SL++ N + Sbjct: 7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKS---SSLSGSLQSFFTSLQTLVSNAEDP 63 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK--F 179 + +I AE +V F T+ + ++ + I ++ + + ++ +ND I Sbjct: 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 124 GVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAV 183 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +S T + + + G + LL R + +N L ++A Sbjct: 184 PSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFAD 243 Query: 300 SFSEKDPIAGNSENVPG 316 +F+ + +++ G Sbjct: 244 AFNAQHTKGYDADGNKG 260 |
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
3a69_A | 402 | Flagellar HOOK protein FLGE; the bacterial flagellar mo | 100.0 | |
2d4y_A | 463 | HAP1, flagellar HOOK-associated protein 1; multi-domain | 100.0 | |
1wlg_A | 299 | Flagellar HOOK protein FLGE; EAR-& motif, structural pr | 98.89 | |
1ucu_A | 494 | Phase 1 flagellin; flagellar filament, cryo-electron mi | 95.69 |
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=321.85 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999867874420257899812679998604------660699899872068878887754445567887 Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79 (480) Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (480) |||+|+|||+|||++|+||||||||+||+||||+|++|+++ +.||.+..++|+ +.++.+..+...++.++. T Consensus 1 s~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v~f~~~~~~~~~G~GV~v~~v~r~---~~qg~~~~t~~~~d~ai~ 77 (402) T 3a69_A 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQD---FTDGTTTNTGRGLDVAIS 77 (402) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------CEECCCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHCCCCCCCCEEEEEEEEE---CCCCCEEECCCCCHHEEC T ss_conf 97899999999997357888889877764206570207776466877674477678984---145645764760030142 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 87899888651267777764011366777668764138675300112210 Q gi|254780524|r 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 (480) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (480) +.+||... ......+++|.+.|..+..+.+.++.+..+.++... T Consensus 78 ~~g~f~~~------~~~g~~~~tr~g~~~~~~~g~lvn~~g~~l~g~~~~ 121 (402) T 3a69_A 78 QNGFFRLV------DSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPAT 121 (402) T ss_dssp SSCEEEEE------CTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECB T ss_pred CCCEEEEE------CCCCCEEEEECCCCCCCCCCCEECCCCCEEECCCCC T ss_conf 78617886------279864364156534278887863789644123145 |
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} | Back alignment and structure |
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>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A | Back alignment and structure |
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>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
d1wlga_ | 293 | Flagellar hook protein flgE {Salmonella typhimurium [Ta | 97.86 |
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: All beta proteins fold: Flagellar hook protein flgE superfamily: Flagellar hook protein flgE family: Flagellar hook protein flgE domain: Flagellar hook protein flgE species: Salmonella typhimurium [TaxId: 90371] Probab=97.86 E-value=3.8e-10 Score=76.67 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=65.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66665555666544310245676642011112333345677652899998777887664211123223456799999998 Q gi|254780524|r 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 (480) Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~ 435 (480) ............+..++.....+.++........+++.+.+...|.....+. |.++..||.+.+++|+++++|+|.++ T Consensus 211 dG~~~G~l~~~~i~~dG~i~~~ysNG~~~~lgqiala~F~Np~gL~~~g~n~--f~~t~~SG~~~~g~~g~~g~G~i~~g 288 (293) T d1wlga_ 211 NGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSGNFGKLTNG 288 (293) T ss_dssp CCBCCBCEEEEEECTTCEEEEEETTSCEEEEEEECEEECSCGGGSEECSTTC--EECCTTTCCCEEECTTBTTBCCCSSC T ss_pred CCCCCEEEEEEEECCCEEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EECCCCCCCCEECCCCCCCCEEEECC T ss_conf 8843112321066587589999769967898899999735968732125970--87600168855568998882238426 Q ss_pred HHHHH Q ss_conf 87662 Q gi|254780524|r 436 YSNTV 440 (480) Q Consensus 436 ~lE~S 440 (480) +||+| T Consensus 289 ~LE~S 293 (293) T d1wlga_ 289 ALEAS 293 (293) T ss_dssp EEEEC T ss_pred CEECC T ss_conf 13169 |
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus | ||
2d4y_A_1-268_356-463 | 376 | (A:1-268,A:356-463) HAP1, flagellar HOOK-associate | 2e-32 |
>2d4y_A (A:1-268,A:356-463) HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}Length = 376 | Back alignment and structure |
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Score = 134 bits (339), Expect = 2e-32 Identities = 56/395 (14%), Positives = 134/395 (33%), Gaps = 28/395 (7%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +++ A + + G + + +++ +S + + SL++ N + Sbjct: 7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKS---SSLSGSLQSFFTSLQTLVSNAEDP 63 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK--F 179 + +I AE +V F T+ + ++ + I ++ + + ++ +ND I Sbjct: 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 124 GVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG-STARQLAA 182 Query: 240 MNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + S + + ++D + G + LL R + +N L ++A Sbjct: 183 VPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFA 242 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 +F+ + +++ G + + + T S D + Sbjct: 243 DAFNAQHTKGYDADGNKGKDFFSIGSAIVDM---NVKVTNEAEIAMASESKLDPDVDTGD 299 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N + L + + N T + + + S Sbjct: 300 SDNR-NGQALLDLQN-----------------SNVVGGNKTFNDAYATLVSDVGNKTSTL 341 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 V + + + GVNL EE L + Sbjct: 342 KTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376 |
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 480 | flagellar hook-associated protein FlgK [Candidatus Libe | ||
2d4y_A_1-268_356-463 | 376 | HAP1, flagellar HOOK-associated protein 1; multi-d | 100.0 |
>2d4y_A (A:1-268,A:356-463) HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} | Back alignment and structure |
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Probab=100.00 E-value=3e-33 Score=221.62 Aligned_cols=371 Identities=15% Similarity=0.162 Sum_probs=290.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC Q ss_conf 06887888775444556788787899888651267777764011366777668764138675300112210122222210 Q gi|254780524|r 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 (480) Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (480) .|.|+..+++...+..++...........+.+|..+ ..++...+..|+..|..+..+|.+...+..++..+..++..+ T Consensus 3 ~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~~~e~--~~gl~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~ 80 (376) T 2d4y_A 3 YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK--SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQF 80 (376) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 579999999999877778999999999999985899--877899999999999999868798899999999999999999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE Q ss_conf 00224565665432000111278788754343210112223456--6765210012100001010020124787337711 Q gi|254780524|r 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 (480) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~ 216 (480) +..+..+..++......+...|.++|.++.+++.+|..|..... .+..+++++|+||.+++++++++++.+....++. T Consensus 81 n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlDqRD~ll~eLS~~i~i~v~~~~~G~ 160 (376) T 2d4y_A 81 KTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGT 160 (376) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSCEEEEEETTTE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 99999999999999999999999999999999999999999861468999067789999999998766070478627885 Q ss_pred EEEECCCCEEEECCCCCE-EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH Q ss_conf 478706970610344412-5763045666766432167336556656776667653111011102331367787887655 Q gi|254780524|r 217 MVVYTSDGTTLFETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 (480) Q Consensus 217 ~~v~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480) +.|+..+|.+|++..... +..... ...........................+|+++|+..+|+..++.++..++.++. T Consensus 161 v~V~~~~G~~LV~g~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~l~gll~~rd~~l~~~~~~Ld~lA~ 239 (376) T 2d4y_A 161 YNLTMANGYTLVQGSTARQLAAVPS-SADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLAL 239 (376) T ss_dssp EEEEETTCCEEEETTEECCEEEEEC-SSCTTCEEEEEEETTTEEEECCGGGGCSHHHHHHHHHHHHTHHHHHHHHHHHHH T ss_pred EEEEECCCEEECCCCCCCEEEEECC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 1267279715035775320465204-677775226773267775445534467521002678864202456778999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 43100123455777777654321122345666654332222223333346662100024566665555666544310245 Q gi|254780524|r 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 (480) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (480) .+++.++..|..|.+..+..+..++.......... ....+..++.... ......+.....++.... T Consensus 240 ~la~~~N~~~~~G~~~~g~~g~~~f~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~gDn~na 305 (376) T 2d4y_A 240 AFADAFNAQHTKGYDADGNKGKDFFSIGSAIVDMN---------VKVTNEAEIAMAS-----ESKLDPDVDTGDSDNRNG 305 (376) T ss_dssp HHHHHHHHHHTTSBCTTSCBCCCCEECCCTTTTCE---------ECCCCGGGCCCBS-----SCCC--------CCCHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH---------HHCCCHHHHHHCC-----CCCCCCCCCCCCCCHHHH T ss_conf 99998887540256777877865312355565303---------4227878764305-----565578766788867999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 676642011112333345677652899998777887664211123223456799999998876628888999999999 Q gi|254780524|r 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 (480) Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~ 453 (480) ..... .. ......++.+|.++|..+++.+++.++.+....+..+..+.++...+.+.|+|+|+||++|||+ T Consensus 306 ~~l~~------lq-~~~~~~g~~T~~~~y~~~v~~vG~~~~~a~~~~~~~~~~~~~~~~~r~svSGVnlDEE~anlik 376 (376) T 2d4y_A 306 QALLD------LQ-NSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376 (376) T ss_dssp HHHHG------GG-GSCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------- T ss_pred HHHHH------CH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC T ss_conf 99984------31-2357689863999999999999999999999999999999999999984206179999998549 |