254780526

254780526

putative transcription regulator protein

GeneID in NCBI database:8209521Locus tag:CLIBASIA_02065
Protein GI in NCBI database:254780526Protein Accession:YP_003064939.1
Gene range:+(756252, 756923)Protein Length:223aa
Gene description:putative transcription regulator protein
COG prediction:[T] [K] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
KEGG prediction:ompR; putative transcription regulator protein
SEED prediction:Transcriptional regulator
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVM1 TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
cEEEEcccHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHcccccccccccHHHccccccEEEEEcccccccHHHHHHHHHHHHcccEEEcHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccEEEEEccccEEEccc
cEEEEccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccEEEEEEccccHccEEEEEccccccccccccHHHHHHHHHHHHHHccccccEEEEccEEEccccEEEEEccEEEcccHHHHHHHHHHHHccccEEcHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccEEEEEEEEEEEEEcc
mfvliddralVKDGYIalfgddgvslegfnsLEFEEWLQSSAREDVSAIEAFLIGkgekvlelPRIIrahsqvpligisdypslqttldffdsgvddvvnkpihHREILARVAAIYRRLKVSnnraetgpirvfsdgrdpevqgevfplprrERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRnklgfdpvdskrflgysidwn
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKvsnnraetgpirvfsdgrdpevqgevfplprrerRILEYLmanrgkrvakTQIFSAIYGLFDEAVEENVVESHISKLRkklrnklgfdpvdskrflgysidwn
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW*
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target223 putative transcription regulator protein [Candidatus Li
254780893236 two component response regulator [Candidatus Liber 2e-14
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Back     alignment
 Score = 70.9 bits (172), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y+   G+DG+ L  F   EF+  +      D+   E        + L + +I       P
Sbjct: 28  YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           +  +S   S++  +    SG DD ++KP +  E++AR+ AI RR   S   A+    TG 
Sbjct: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EVQG    L  +E +++E L   +   + K    + +Y   DE  E  ++
Sbjct: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190

Query: 191 ESHISKLRKKLRNKLG 206
           +  I KLRKKL N  G
Sbjct: 191 DVFICKLRKKLSNAAG 206

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target223 putative transcription regulator protein [Candidatus Li
315122283223 putative transcription regulator protein [Candidatus Li 1 4e-99
307311573223 two component transcriptional regulator, winged helix f 1 5e-81
15964431223 putative transcription regulator protein [Sinorhizobium 1 1e-80
227820874223 two component transcriptional regulator, winged helix f 1 5e-80
150395502223 two component transcriptional regulator [Sinorhizobium 1 7e-80
239834427227 Sensory transduction protein regX3 [Ochrobactrum interm 1 5e-73
153011509227 two component transcriptional regulator [Ochrobactrum a 1 8e-73
306841275227 Protein petR [Brucella sp. BO2] Length = 227 1 9e-73
15887918223 transcriptional regulator [Agrobacterium tumefaciens st 1 9e-73
325291960223 Response regulator of exponential growth motility [Agro 1 1e-72
>gi|315122283|ref|YP_004062772.1| putative transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 Back     alignment and organism information
 Score =  365 bits (936), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 198/223 (88%), Positives = 209/223 (93%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M VLIDDRALVK+GYI+LF DDGVSLEGF+SLEFEEW QS A+EDVSAIEAFLIG GEKV
Sbjct: 1   MLVLIDDRALVKNGYISLFSDDGVSLEGFHSLEFEEWFQSLAQEDVSAIEAFLIGTGEKV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +ELPRIIR+ SQ+PLI ISDY SLQ TLDFFD GVDDVV+KPIHHREILARVAAI+RRLK
Sbjct: 61  MELPRIIRSQSQMPLIAISDYSSLQKTLDFFDVGVDDVVHKPIHHREILARVAAIHRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+N+R E GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL
Sbjct: 121 VANHRVEIGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDPVDSKRFLGYSIDWN
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGFDPVDSKRFLGYSIDWN 223


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|307311573|ref|ZP_07591214.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Back     alignment and organism information
>gi|15964431|ref|NP_384784.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] Length = 223 Back     alignment and organism information
>gi|227820874|ref|YP_002824844.1| two component transcriptional regulator, winged helix family [Sinorhizobium fredii NGR234] Length = 223 Back     alignment and organism information
>gi|150395502|ref|YP_001325969.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] Length = 223 Back     alignment and organism information
>gi|239834427|ref|ZP_04682755.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG 3301] Length = 227 Back     alignment and organism information
>gi|153011509|ref|YP_001372723.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] Length = 227 Back     alignment and organism information
>gi|306841275|ref|ZP_07473986.1| Protein petR [Brucella sp. BO2] Length = 227 Back     alignment and organism information
>gi|15887918|ref|NP_353599.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 223 Back     alignment and organism information
>gi|325291960|ref|YP_004277824.1| Response regulator of exponential growth motility [Agrobacterium sp. H13-3] Length = 223 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target223 putative transcription regulator protein [Candidatus Li
pfam0048677 pfam00486, Trans_reg_C, Transcriptional regulatory prot 2e-12
smart0086278 smart00862, Trans_reg_C, Transcriptional regulatory pro 2e-12
cd0038395 cd00383, trans_reg_C, Effector domain of response regul 7e-12
COG3710148 COG3710, CadC, DNA-binding winged-HTH domains [Transcri 2e-04
TIGR02154226 TIGR02154, PhoB, phosphate regulon transcriptional regu 3e-11
PRK11083228 PRK11083, PRK11083, DNA-binding response regulator CreB 1e-10
PRK11517223 PRK11517, PRK11517, transcriptional regulatory protein 3e-10
CHL00148240 CHL00148, orf27, Ycf27; Reviewed 3e-09
PRK15479221 PRK15479, PRK15479, transcriptional regulatory protein 3e-09
PRK10643222 PRK10643, PRK10643, DNA-binding transcriptional regulat 1e-08
PRK10955232 PRK10955, PRK10955, DNA-binding transcriptional regulat 3e-06
PRK10161229 PRK10161, PRK10161, transcriptional regulator PhoB; Pro 4e-05
PRK09836227 PRK09836, PRK09836, DNA-binding transcriptional activat 3e-04
PRK10816223 PRK10816, PRK10816, DNA-binding transcriptional regulat 2e-10
TIGR01387218 TIGR01387, cztR_silR_copR, heavy metal response regulat 3e-09
PRK10529225 PRK10529, PRK10529, DNA-binding transcriptional activat 1e-08
PRK10710240 PRK10710, PRK10710, DNA-binding transcriptional regulat 3e-06
COG3947 361 COG3947, COG3947, Response regulator containing CheY-li 7e-04
PRK10336219 PRK10336, PRK10336, DNA-binding transcriptional regulat 4e-09
TIGR03787227 TIGR03787, marine_sort_RR, proteobacterial dedicated so 5e-07
COG2197211 COG2197, CitB, Response regulator containing a CheY-lik 4e-05
COG0745229 COG0745, OmpR, Response regulators consisting of a CheY 2e-24
COG2204 464 COG2204, AtoC, Response regulator containing CheY-like 2e-04
cd00156113 cd00156, REC, Signal receiver domain; originally though 3e-04
COG3437 360 COG3437, COG3437, Response regulator containing a CheY- 0.001
COG3706435 COG3706, PleD, Response regulator containing a CheY-lik 0.001
>gnl|CDD|144178 pfam00486, Trans_reg_C, Transcriptional regulatory protein, C terminal Back     alignment and domain information
>gnl|CDD|129095 smart00862, Trans_reg_C, Transcriptional regulatory protein, C terminal Back     alignment and domain information
>gnl|CDD|29475 cd00383, trans_reg_C, Effector domain of response regulator Back     alignment and domain information
>gnl|CDD|33505 COG3710, CadC, DNA-binding winged-HTH domains [Transcription] Back     alignment and domain information
>gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>gnl|CDD|182950 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional Back     alignment and domain information
>gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>gnl|CDD|164540 CHL00148, orf27, Ycf27; Reviewed Back     alignment and domain information
>gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>gnl|CDD|182612 PRK10643, PRK10643, DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional Back     alignment and domain information
>gnl|CDD|182102 PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>gnl|CDD|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator Back     alignment and domain information
>gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>gnl|CDD|182665 PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>gnl|CDD|33728 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182387 PRK10336, PRK10336, DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>gnl|CDD|32379 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|31088 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|29071 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>gnl|CDD|33243 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|33501 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 223 putative transcription regulator protein [Candidatus Li
TIGR02154226 PhoB phosphate regulon transcriptional regulatory prote 100.0
PRK10161229 transcriptional regulator PhoB; Provisional 100.0
PRK11517223 transcriptional regulatory protein YedW; Provisional 100.0
CHL00148240 orf27 Ycf27; Reviewed 100.0
PRK09836226 DNA-binding transcriptional activator CusR; Provisional 100.0
PRK10701240 DNA-binding transcriptional regulator RstA; Provisional 100.0
TIGR01387219 cztR_silR_copR heavy metal response regulator; InterPro 100.0
PRK09468239 ompR osmolarity response regulator; Provisional 100.0
PRK10529225 DNA-binding transcriptional activator KdpE; Provisional 100.0
PRK11083229 DNA-binding response regulator CreB; Provisional 100.0
PRK10955232 DNA-binding transcriptional regulator CpxR; Provisional 100.0
COG0745229 OmpR Response regulators consisting of a CheY-like rece 100.0
PRK10336219 DNA-binding transcriptional regulator QseB; Provisional 100.0
PRK10816223 DNA-binding transcriptional regulator PhoP; Provisional 100.0
PRK10710240 DNA-binding transcriptional regulator BaeR; Provisional 100.0
PRK11173237 two-component response regulator; Provisional 100.0
PRK10643222 DNA-binding transcriptional regulator BasR; Provisional 100.0
PRK13856241 two-component response regulator VirG; Provisional 100.0
PRK10766224 DNA-binding transcriptional regulator TorR; Provisional 100.0
PRK09390202 fixJ response regulator FixJ; Provisional 99.98
PRK10651216 transcriptional regulator NarL; Provisional 99.95
PRK10403215 transcriptional regulator NarP; Provisional 99.95
PRK09958204 DNA-binding transcriptional activator EvgA; Provisional 99.94
PRK09935210 transcriptional regulator FimZ; Provisional 99.93
PRK09483216 response regulator; Provisional 99.93
COG3947 361 Response regulator containing CheY-like receiver and SA 99.92
COG2197211 CitB Response regulator containing a CheY-like receiver 99.92
PRK10360196 DNA-binding transcriptional activator UhpA; Provisional 99.92
PRK10840216 transcriptional regulator RcsB; Provisional 99.92
COG4566202 TtrR Response regulator [Signal transduction mechanisms 99.91
PRK10430239 DNA-binding transcriptional activator DcuR; Provisional 99.9
PRK10100216 DNA-binding transcriptional regulator CsgD; Provisional 99.84
PRK11475205 DNA-binding transcriptional activator BglJ; Provisional 99.72
COG4567182 Response regulator consisting of a CheY-like receiver d 99.6
PRK09581 457 pleD response regulator PleD; Reviewed 99.93
PRK10693 337 response regulator of RpoS; Provisional 99.92
PRK10923 469 glnG nitrogen regulation protein NR(I); Provisional 99.91
pfam00072111 Response_reg Response regulator receiver domain. This d 99.9
PRK11361 457 acetoacetate metabolism regulatory protein AtoC; Provis 99.9
PRK10365 441 transcriptional regulatory protein ZraR; Provisional 99.89
PRK10610129 chemotaxis regulatory protein CheY; Provisional 99.89
PRK13435141 response regulator; Provisional 99.88
cd00156113 REC Signal receiver domain; originally thought to be un 99.88
PRK11107920 hybrid sensory histidine kinase BarA; Provisional 99.86
PRK10841947 hybrid sensory kinase in two-component regulatory syste 99.85
COG2204 464 AtoC Response regulator containing CheY-like receiver, 99.83
PRK099591197 hybrid sensory histidine kinase in two-component regula 99.83
PRK13557538 histidine kinase; Provisional 99.81
PRK11091779 aerobic respiration control sensor protein ArcB; Provis 99.81
COG3437 360 Response regulator containing a CheY-like receiver doma 99.79
PRK11466912 hybrid sensory histidine kinase TorS; Provisional 99.78
COG3706435 PleD Response regulator containing a CheY-like receiver 99.76
PRK00742 345 chemotaxis-specific methylesterase; Provisional 99.76
COG4753 475 Response regulator containing CheY-like receiver domain 99.74
TIGR02875270 spore_0_A sporulation transcription factor Spo0A; Inter 99.73
PRK12555 340 chemotaxis-specific methylesterase; Provisional 99.71
TIGR02915 451 PEP_resp_reg putative PEP-CTERM system response regulat 99.65
PRK13837831 two-component VirA-like sensor kinase; Provisional 99.61
KOG0519786 consensus 99.57
PRK11697239 putative two-component response-regulatory protein YehT 99.57
PRK09191261 two-component response regulator; Provisional 99.53
COG0784130 CheY FOG: CheY-like receiver [Signal transduction mecha 99.52
TIGR029561052 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: I 99.49
COG2201 350 CheB Chemotaxis response regulator containing a CheY-li 99.28
PRK13558 674 bacterio-opsin activator; Provisional 99.15
COG3707194 AmiR Response regulator with putative antiterminator ou 98.98
PRK09581457 pleD response regulator PleD; Reviewed 98.86
COG3279244 LytT Response regulator of the LytR/AlgR family [Transc 98.84
COG3706 435 PleD Response regulator containing a CheY-like receiver 98.76
pfam06490109 FleQ Flagellar regulatory protein FleQ. This domain is 97.78
PRK11107 920 hybrid sensory histidine kinase BarA; Provisional 97.73
TIGR01815726 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 94.83
CHL00162267 thiG thiamin biosynthesis protein G; Validated 93.39
pfam05690246 ThiG Thiazole biosynthesis protein ThiG. This family co 93.33
PRK00208256 thiG thiazole synthase; Reviewed 92.89
pfam02310121 B12-binding B12 binding domain. This domain binds to B1 92.43
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme 92.31
PRK11840327 bifunctional sulfur carrier protein/thiazole synthase p 91.97
cd02067119 B12-binding B12 binding domain (B12-BD). This domain bi 91.83
cd02070201 corrinoid_protein_B12-BD B12 binding domain of corrinoi 91.25
PRK10669558 putative cation:proton antiport protein; Provisional 91.05
PRK10046225 dpiA two-component response regulator DpiA; Provisional 99.92
TIGR01818 471 ntrC nitrogen regulation protein NR(I); InterPro: IPR01 99.85
COG4565224 CitB Response regulator of citrate/malate metabolism [T 99.73
cd0038395 trans_reg_C Effector domain of response regulator. Bact 99.86
pfam0048677 Trans_reg_C Transcriptional regulatory protein, C termi 99.73
smart0086278 Trans_reg_C Transcriptional regulatory protein, C termi 99.64
COG3710148 CadC DNA-binding winged-HTH domains [Transcription] 99.63
PRK12370 553 invasion protein regulator; Provisional 99.57
PRK10153 512 DNA-binding transcriptional activator CadC; Provisional 99.33
PRK11906 458 transcriptional regulator; Provisional 99.17
PRK07239381 bifunctional uroporphyrinogen-III synthetase/response r 98.53
COG3629 280 DnrI DNA-binding transcriptional activator of the SARP 97.9
PRK04841903 transcriptional regulator MalT; Provisional 97.58
pfam0019658 GerE Bacterial regulatory proteins, luxR family. 97.29
cd0617057 LuxR_C_like C-terminal DNA-binding domain of LuxR-like 97.29
TIGR03020247 EpsA transcriptional regulator EpsA. Proteins in this f 97.23
smart0042158 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (ac 97.1
TIGR03541232 reg_near_HchA LuxR family transcriptional regulatory, c 97.09
PRK10188240 DNA-binding transcriptional activator SdiA; Provisional 96.74
COG2909894 MalT ATP-dependent transcriptional regulator [Transcrip 96.59
PRK13870234 transcriptional regulator TraR; Provisional 96.44
COG277165 CsgD DNA-binding HTH domain-containing proteins [Transc 95.16
PRK06930170 positive control sigma-like factor; Validated 92.76
smart0044855 REC cheY-homologous receiver domain. CheY regulates the 98.15
PRK13566724 anthranilate synthase; Provisional 92.95
COG0512191 PabA Anthranilate/para-aminobenzoate synthases componen 92.24
PRK07649195 para-aminobenzoate/anthranilate synthase glutamine amid 91.42
PRK08007187 para-aminobenzoate synthase component II; Provisional 90.89
PRK06774191 para-aminobenzoate synthase component II; Provisional 90.87
PRK11886319 biotin--protein ligase; Provisional 96.83
pfam0827955 HTH_11 HTH domain. This family includes helix-turn-heli 96.72
COG165479 BirA Biotin operon repressor [Transcription] 94.62
PRK09863585 putative frv operon regulatory protein; Provisional 96.62
PRK09954362 hypothetical protein; Provisional 95.72
PRK12423202 LexA repressor; Provisional 92.06
pfam03709111 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain 91.92
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion Back     alignment and domain information
>PRK10161 transcriptional regulator PhoB; Provisional Back     alignment and domain information
>PRK11517 transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>CHL00148 orf27 Ycf27; Reviewed Back     alignment and domain information
>PRK09836 DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional Back     alignment and domain information
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region Back     alignment and domain information
>PRK09468 ompR osmolarity response regulator; Provisional Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>PRK11083 DNA-binding response regulator CreB; Provisional Back     alignment and domain information
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK09390 fixJ response regulator FixJ; Provisional Back     alignment and domain information
>PRK10651 transcriptional regulator NarL; Provisional Back     alignment and domain information
>PRK10403 transcriptional regulator NarP; Provisional Back     alignment and domain information
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional Back     alignment and domain information
>PRK09935 transcriptional regulator FimZ; Provisional Back     alignment and domain information
>PRK09483 response regulator; Provisional Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional Back     alignment and domain information
>PRK10840 transcriptional regulator RcsB; Provisional Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional Back     alignment and domain information
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional Back     alignment and domain information
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>pfam00072 Response_reg Response regulator receiver domain Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK10610 chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>PRK13435 response regulator; Provisional Back     alignment and domain information
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK00742 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain Back     alignment and domain information
>PRK12555 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT) Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>KOG0519 consensus Back     alignment and domain information
>PRK11697 putative two-component response-regulatory protein YehT; Provisional Back     alignment and domain information
>PRK09191 two-component response regulator; Provisional Back     alignment and domain information
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC) Back     alignment and domain information
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>pfam06490 FleQ Flagellar regulatory protein FleQ Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium) Back     alignment and domain information
>CHL00162 thiG thiamin biosynthesis protein G; Validated Back     alignment and domain information
>pfam05690 ThiG Thiazole biosynthesis protein ThiG Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>pfam02310 B12-binding B12 binding domain Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK10046 dpiA two-component response regulator DpiA; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>cd00383 trans_reg_C Effector domain of response regulator Back     alignment and domain information
>pfam00486 Trans_reg_C Transcriptional regulatory protein, C terminal Back     alignment and domain information
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal Back     alignment and domain information
>COG3710 CadC DNA-binding winged-HTH domains [Transcription] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>pfam00196 GerE Bacterial regulatory proteins, luxR family Back     alignment and domain information
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins Back     alignment and domain information
>TIGR03020 EpsA transcriptional regulator EpsA Back     alignment and domain information
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon Back     alignment and domain information
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated Back     alignment and domain information
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK13870 transcriptional regulator TraR; Provisional Back     alignment and domain information
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription] Back     alignment and domain information
>PRK06930 positive control sigma-like factor; Validated Back     alignment and domain information
>smart00448 REC cheY-homologous receiver domain Back     alignment and domain information
>PRK13566 anthranilate synthase; Provisional Back     alignment and domain information
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated Back     alignment and domain information
>PRK08007 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK06774 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK11886 biotin--protein ligase; Provisional Back     alignment and domain information
>pfam08279 HTH_11 HTH domain Back     alignment and domain information
>COG1654 BirA Biotin operon repressor [Transcription] Back     alignment and domain information
>PRK09863 putative frv operon regulatory protein; Provisional Back     alignment and domain information
>PRK09954 hypothetical protein; Provisional Back     alignment and domain information
>PRK12423 LexA repressor; Provisional Back     alignment and domain information
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target223 putative transcription regulator protein [Candidatus Li
2oqr_A230 The Structure Of The Response Regulator Regx3 From 3e-35
>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Back     alignment and structure
 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target223 putative transcription regulator protein [Candidatus Li
2oqr_A230 Sensory transduction protein REGX3; response regulator, 4e-23
1kgs_A225 DRRD, DNA binding response regulator D; DNA-binding pro 4e-16
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription; HET 3e-15
2gwr_A238 DNA-binding response regulator MTRA; two-component regu 9e-15
1ys7_A233 Transcriptional regulatory protein PRRA; response regul 1e-12
1a04_A215 Nitrate/nitrite response regulator protein NARL; signal 5e-10
3klo_A225 Transcriptional regulator VPST; REC domain, HTH domain, 1e-08
3c3w_A225 Two component transcriptional regulatory protein DEVR; 7e-07
1yio_A208 Response regulatory protein; transcription regulation, 2e-06
2ff4_A 388 Probable regulatory protein EMBR; winged-helix, tetratr 5e-10
2jzy_A112 Transcriptional regulatory protein PCOR; two-component- 6e-10
2k4j_A115 Putative transcriptional regulator; response regulator, 7e-09
2hqr_A223 Putative transcriptional regulator; phosporylation-inde 7e-09
1gxq_A106 PHOB, phosphate regulon transcriptional regulatory prot 4e-08
1opc_A110 OMPR, OMPRC; transcription regulation, response regulat 7e-08
2z9m_A120 Response regulator YYCF; two-component system, YYCG, he 1e-05
2hqn_A109 Putative transcriptional regulator; phosporylation-inde 6e-05
2hwv_A121 DNA-binding response regulator VICR; essential response 0.002
2a9o_A120 Response regulator; essential protein, YYCF/YYCG homolo 4e-08
3h5i_A140 Response regulator/sensory box protein/ggdef domain pro 1e-07
3crn_A132 Response regulator receiver domain protein, CHEY- like; 2e-07
3cg0_A140 Response regulator receiver modulated diguanylate cycla 7e-07
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatase, co 1e-06
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like fold 1e-06
2jba_A127 Phosphate regulon transcriptional regulatory protein PH 1e-06
3cg4_A142 Response regulator receiver domain protein (CHEY- like) 2e-06
3hdv_A136 Response regulator; PSI-II, structural genomics, protei 2e-06
1zh2_A121 KDP operon transcriptional regulatory protein KDPE; two 2e-06
3cnb_A143 DNA-binding response regulator, MERR family; signal rec 5e-06
3cfy_A137 Putative LUXO repressor protein; structural genomics, u 5e-06
3n0r_A286 Response regulator; sigma factor, receiver, two-compone 6e-06
3kht_A144 Response regulator; PSI-II, structural genomics, protei 6e-06
2zay_A147 Response regulator receiver protein; structural genomic 7e-06
1zgz_A122 Torcad operon transcriptional regulatory protein TORR; 1e-05
3kto_A136 Response regulator receiver protein; PSI-II,structural 1e-05
2qzj_A136 Two-component response regulator; 11017X, PSI-II, struc 1e-05
3gl9_A122 Response regulator; beta-sheet, surrounded by alpha hel 1e-05
3gt7_A154 Sensor protein; structural genomics, signal receiver do 1e-05
2qr3_A140 Two-component system response regulator; structural gen 1e-05
1xhf_A123 DYE resistance, aerobic respiration control protein ARC 1e-05
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGXRC, s 2e-05
2qxy_A142 Response regulator; regulation of transcription, NYSGXR 2e-05
3cu5_A141 Two component transcriptional regulator, ARAC family; s 2e-05
1srr_A124 SPO0F, sporulation response regulatory protein; asparta 2e-05
2ayx_A254 Sensor kinase protein RCSC; two independent structural 2e-05
1mb3_A124 Cell division response regulator DIVK; signal transduct 2e-05
3jte_A143 Response regulator receiver protein; structural genomic 2e-05
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wound f 3e-05
3eqz_A135 Response regulator; structural genomics, unknown functi 3e-05
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional regula 5e-05
3c3m_A138 Response regulator receiver protein; structural genomic 6e-05
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain, pho 8e-05
3hdg_A137 Uncharacterized protein; two-component sensor activity, 9e-05
3b2n_A133 Uncharacterized protein Q99UF4; structural genomics, PS 9e-05
2qsj_A154 DNA-binding response regulator, LUXR family; structural 1e-04
2pln_A137 HP1043, response regulator; signaling protein; 1.80A {H 1e-04
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5-BETA5 2e-04
2rjn_A154 Response regulator receiver:metal-dependent phosphohydr 2e-04
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA h 3e-04
3a10_A116 Response regulator; phosphoacceptor, signaling protein; 4e-04
3heb_A152 Response regulator receiver domain protein (CHEY); NYSG 5e-04
3f6c_A134 Positive transcription regulator EVGA; structural genom 5e-04
3eul_A152 Possible nitrate/nitrite response transcriptional regul 6e-04
3eod_A130 Protein HNR; response regulator, phosphoprotein, two-co 7e-04
3cz5_A153 Two-component response regulator, LUXR family; structur 9e-04
3grc_A140 Sensor protein, kinase; protein structure initiative II 0.001
2j48_A119 Two-component sensor kinase; pseudo-receiver, circadian 0.002
2gkg_A127 Response regulator homolog; social motility, receiver d 0.002
2rdm_A132 Response regulator receiver protein; structural genomic 0.003
3i42_A127 Response regulator receiver domain protein (CHEY- like) 0.003
3c97_A140 Signal transduction histidine kinase; structural genomi 0.003
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural genom 0.004
3luf_A259 Two-component system response regulator/ggdef domain pr 1e-07
2zwm_A130 Transcriptional regulatory protein YYCF; two-component 6e-07
3f6p_A120 Transcriptional regulatory protein YYCF; unphosphorelat 2e-06
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A {Esch 4e-06
1p6q_A129 CHEY2; chemotaxis, signal transduction, response regula 5e-06
3lua_A140 Response regulator receiver protein; two-component sign 6e-06
2qv0_A143 Protein MRKE; structural genomics, transcription, PSI-2 5e-05
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cy 1e-04
1dz3_A130 Stage 0 sporulation protein A; response regulator, doma 2e-04
1mvo_A136 PHOP response regulator; phosphate regulon, transcripti 3e-04
1i3c_A149 Response regulator RCP1; phytochrome, signaling protein 4e-04
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer, sig 4e-04
1k68_A140 Phytochrome response regulator RCPA; phosphorylated asp 5e-04
3lte_A132 Response regulator; structural genomics, PSI, protein s 6e-04
3nhm_A133 Response regulator; protein structure initiative II(PSI 6e-04
1k66_A149 Phytochrome response regulator RCPB; CHEY homologue, ho 7e-04
3bre_A 358 Probable two-component response regulator; protein-nucl 0.003
1dcf_A136 ETR1 protein; beta-alpha five sandwich; 2.50A {Arabidop 0.004
1s8n_A205 Putative antiterminator; structural genomics, transcrip 7e-07
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 Back     alignment and structure
 Score =  103 bits (257), Expect = 4e-23
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + D    L   +G              L    R     +   L+  G    ++
Sbjct: 9   IVEDEESLADPLAFLLRKEGFEATVVTD--GPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR     
Sbjct: 67  CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 126

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++
Sbjct: 127 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 187 G-ADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Length = 225 Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Length = 220 Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} Length = 238 Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Length = 215 Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} Length = 225 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388 Back     alignment and structure
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae} Length = 112 Back     alignment and structure
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99} Length = 115 Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Length = 223 Back     alignment and structure
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A Length = 106 Back     alignment and structure
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A Length = 110 Back     alignment and structure
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99} Length = 109 Back     alignment and structure
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583} Length = 121 Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Length = 136 Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143 Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} Length = 286 Back     alignment and structure
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Length = 144 Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Length = 147 Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Length = 136 Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Length = 136 Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Length = 140 Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Rhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} Length = 135 Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Length = 133 Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 Back     alignment and structure
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Length = 154 Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170} Length = 152 Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Length = 134 Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Length = 132 Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} Length = 130 Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Length = 128 Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Length = 132 Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A* Length = 358 Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 Back     alignment and structure
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target223 putative transcription regulator protein [Candidatus Li
2oqr_A230 Sensory transduction protein REGX3; response regulator, 100.0
2gwr_A238 DNA-binding response regulator MTRA; two-component regu 100.0
1ys7_A233 Transcriptional regulatory protein PRRA; response regul 100.0
1kgs_A225 DRRD, DNA binding response regulator D; DNA-binding pro 100.0
2hqr_A223 Putative transcriptional regulator; phosporylation-inde 100.0
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription; HET 100.0
1yio_A208 Response regulatory protein; transcription regulation, 99.96
1a04_A215 Nitrate/nitrite response regulator protein NARL; signal 99.96
3c3w_A225 Two component transcriptional regulatory protein DEVR; 99.91
3klo_A225 Transcriptional regulator VPST; REC domain, HTH domain, 99.87
2qzj_A136 Two-component response regulator; 11017X, PSI-II, struc 99.93
1zh2_A121 KDP operon transcriptional regulatory protein KDPE; two 99.93
3gt7_A154 Sensor protein; structural genomics, signal receiver do 99.92
1s8n_A205 Putative antiterminator; structural genomics, transcrip 99.92
1w25_A 459 Stalked-cell differentiation controlling protein; two-c 99.92
1zgz_A122 Torcad operon transcriptional regulatory protein TORR; 99.92
2a9o_A120 Response regulator; essential protein, YYCF/YYCG homolo 99.92
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like fold 99.92
2pln_A137 HP1043, response regulator; signaling protein; 1.80A {H 99.92
3f6p_A120 Transcriptional regulatory protein YYCF; unphosphorelat 99.92
1mvo_A136 PHOP response regulator; phosphate regulon, transcripti 99.91
1xhf_A123 DYE resistance, aerobic respiration control protein ARC 99.91
2qxy_A142 Response regulator; regulation of transcription, NYSGXR 99.91
3crn_A132 Response regulator receiver domain protein, CHEY- like; 99.91
3luf_A259 Two-component system response regulator/ggdef domain pr 99.9
2jba_A127 Phosphate regulon transcriptional regulatory protein PH 99.9
3jte_A143 Response regulator receiver protein; structural genomic 99.9
3cg4_A142 Response regulator receiver domain protein (CHEY- like) 99.9
2qr3_A140 Two-component system response regulator; structural gen 99.9
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional regula 99.9
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatase, co 99.9
3h5i_A140 Response regulator/sensory box protein/ggdef domain pro 99.89
3gl9_A122 Response regulator; beta-sheet, surrounded by alpha hel 99.89
3c3m_A138 Response regulator receiver protein; structural genomic 99.89
2zay_A