254780531
flagellin domain-containing protein
| GeneID in NCBI database: | 8209526 | Locus tag: | CLIBASIA_02090 |
| Protein GI in NCBI database: | 254780531 | Protein Accession: | YP_003064944.1 |
| Gene range: | +(749696, 751054) | Protein Length: | 452aa |
| Gene description: | flagellin domain-containing protein | ||
| COG prediction: | [N] Flagellin and related hook-associated proteins | ||
| KEGG prediction: | flagellin domain-containing protein; K02406 flagellin | ||
| SEED prediction: | Flagellin protein FlaA | ||
| Pathway involved in KEGG: | Two-component system [PATH:las02020]
Flagellar assembly [PATH:las02040] | ||
| Subsystem involved in SEED: | Flagellum in Campylobacter | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | |||
| 315122277 | 457 | flagellin domain-containing protein [Candidatus Liberib | 1 | 1e-146 | |
| 13124736 | 395 | RecName: Full=Flagellin A Length = 395 | 1 | 3e-76 | |
| 307318919 | 395 | flagellin domain protein [Sinorhizobium meliloti AK83] | 1 | 3e-76 | |
| 159184370 | 430 | flagellin protein FlaD [Agrobacterium tumefaciens str. | 1 | 6e-76 | |
| 152221 | 395 | flagellin A (flaA) [Sinorhizobium meliloti] Length = 39 | 1 | 7e-76 | |
| 150395492 | 395 | flagellin domain-containing protein [Sinorhizobium medi | 1 | 1e-75 | |
| 15964422 | 394 | flagellin A protein [Sinorhizobium meliloti 1021] Lengt | 1 | 3e-75 | |
| 15964424 | 401 | flagellin D protein [Sinorhizobium meliloti 1021] Lengt | 1 | 9e-74 | |
| 17380397 | 395 | RecName: Full=Flagellin B Length = 395 | 1 | 2e-73 | |
| 307318920 | 395 | flagellin domain protein [Sinorhizobium meliloti AK83] | 1 | 3e-73 |
| >gi|315122277|ref|YP_004062766.1| flagellin domain-containing protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 457 | Back alignment and organism information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 280/460 (60%), Positives = 351/460 (76%), Gaps = 11/460 (2%)
Query: 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGAL 60
MTSILTN AMSASQKLR INYNLEVVQDRVSSGLRV+D++DNAAYWSIA++MKSDN AL
Sbjct: 1 MTSILTNLPAMSASQKLRAINYNLEVVQDRVSSGLRVADSSDNAAYWSIAKMMKSDNAAL 60
Query: 61 SAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLR 120
SAVSDAIGLGSSKVDIAKAGM ++I V+S+IK K+ A E GTD+ S+Q+EI+QLQ QL
Sbjct: 61 SAVSDAIGLGSSKVDIAKAGMDESIKVLSSIKEKLVAATEHGTDAHSVQAEISQLQQQLG 120
Query: 121 DIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSS 180
DIA+GSSFNGENWLR L + ++SI+KSV+ SFIRD++G+VQ+TTIDY LD T+L D+S
Sbjct: 121 DIAQGSSFNGENWLRASLVTPSSSISKSVVSSFIRDESGQVQVTTIDYNLDSNTLLFDTS 180
Query: 181 TDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFD 240
G RYGLLD+ H+I V+PQ + +I++S D++ + T K LAT SGAWLKAA ATF+
Sbjct: 181 GQGG-RYGLLDKKHQISVQPQKMSEIEISYLDSNAKLQTIKKDLATASGAWLKAAGATFN 239
Query: 241 QAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSD 300
Q KG+A +P P + + + +S SPS YIR+GN D WV+ T +S
Sbjct: 240 QEKGVAILPKN-PVVSPSSSPSFPSSSPSSPSSQDKIIYIRVGNQDQWVKGTDSGDYSST 298
Query: 301 PGYTNST--------VAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANT 352
+ + V + + YY+D + TLD+RK + + +D YS+VTL+IT+H+N
Sbjct: 299 LSSDSKSSSPKKAVAVTQYDDKSYYIDASAVTLDNRK-VEQTMDLDYSIVTLDITKHSND 357
Query: 353 DAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVD 412
YNE M+EM+SFID ++K T+AAGKIGSISSRIHLQEDF+K MRDAVEKG+GRLVD
Sbjct: 358 SMYNEATTMKEMLSFIDQKLKLVTSAAGKIGSISSRIHLQEDFVKFMRDAVEKGIGRLVD 417
Query: 413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG 452
ADMA ES++LSALQTQQQLA+QALSIVNNSTA+ILSLFRG
Sbjct: 418 ADMADESSKLSALQTQQQLAIQALSIVNNSTAKILSLFRG 457
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|13124736|sp|P13118|FLAA2_RHIME RecName: Full=Flagellin A Length = 395 | Back alignment and organism information |
|---|
| >gi|307318919|ref|ZP_07598350.1| flagellin domain protein [Sinorhizobium meliloti AK83] Length = 395 | Back alignment and organism information |
|---|
| >gi|159184370|ref|NP_353593.2| flagellin protein FlaD [Agrobacterium tumefaciens str. C58] Length = 430 | Back alignment and organism information |
|---|
| >gi|152221|gb|AAA26277.1| flagellin A (flaA) [Sinorhizobium meliloti] Length = 395 | Back alignment and organism information |
|---|
| >gi|150395492|ref|YP_001325959.1| flagellin domain-containing protein [Sinorhizobium medicae WSM419] Length = 395 | Back alignment and organism information |
|---|
| >gi|15964422|ref|NP_384775.1| flagellin A protein [Sinorhizobium meliloti 1021] Length = 394 | Back alignment and organism information |
|---|
| >gi|15964424|ref|NP_384777.1| flagellin D protein [Sinorhizobium meliloti 1021] Length = 401 | Back alignment and organism information |
|---|
| >gi|17380397|sp|P13119|FLAB2_RHIME RecName: Full=Flagellin B Length = 395 | Back alignment and organism information |
|---|
| >gi|307318920|ref|ZP_07598351.1| flagellin domain protein [Sinorhizobium meliloti AK83] Length = 395 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| PRK12687 | 311 | PRK12687, PRK12687, flagellin; Reviewed | 5e-30 | |
| COG1344 | 360 | COG1344, FlgL, Flagellin and related hook-associated pr | 1e-22 | |
| PRK12687 | 311 | PRK12687, PRK12687, flagellin; Reviewed | 1e-19 | |
| pfam00669 | 139 | pfam00669, Flagellin_N, Bacterial flagellin N-terminal | 2e-18 | |
| PRK13588 | 514 | PRK13588, PRK13588, flagellin B; Provisional | 2e-10 | |
| PRK08411 | 572 | PRK08411, PRK08411, flagellin; Reviewed | 6e-09 | |
| PRK12807 | 287 | PRK12807, PRK12807, flagellin; Provisional | 7e-09 | |
| PRK13589 | 576 | PRK13589, PRK13589, flagellin; Provisional | 1e-07 | |
| PRK08869 | 376 | PRK08869, PRK08869, flagellin; Reviewed | 2e-07 | |
| PRK12806 | 475 | PRK12806, PRK12806, flagellin; Provisional | 7e-06 | |
| PRK12808 | 476 | PRK12808, PRK12808, flagellin; Provisional | 1e-05 | |
| TIGR02550 | 306 | TIGR02550, flagell_flgL, flagellar hook-associated prot | 1e-04 | |
| PRK12802 | 282 | PRK12802, PRK12802, flagellin; Provisional | 2e-04 | |
| PRK12804 | 301 | PRK12804, PRK12804, flagellin; Provisional | 3e-04 | |
| COG1344 | 360 | COG1344, FlgL, Flagellin and related hook-associated pr | 8e-14 | |
| PRK12584 | 510 | PRK12584, PRK12584, flagellin A; Reviewed | 3e-10 | |
| pfam00700 | 84 | pfam00700, Flagellin_C, Bacterial flagellin C-terminal | 1e-07 | |
| PRK12688 | 751 | PRK12688, PRK12688, flagellin; Reviewed | 0.003 |
| >gnl|CDD|105853 PRK12687, PRK12687, flagellin; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|31535 COG1344, FlgL, Flagellin and related hook-associated proteins [Cell motility and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|105853 PRK12687, PRK12687, flagellin; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|144315 pfam00669, Flagellin_N, Bacterial flagellin N-terminal helical region | Back alignment and domain information |
|---|
| >gnl|CDD|184167 PRK13588, PRK13588, flagellin B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|169431 PRK08411, PRK08411, flagellin; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|171737 PRK12807, PRK12807, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181570 PRK08869, PRK08869, flagellin; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183761 PRK12806, PRK12806, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|171738 PRK12808, PRK12808, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183759 PRK12804, PRK12804, flagellin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|31535 COG1344, FlgL, Flagellin and related hook-associated proteins [Cell motility and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|183609 PRK12584, PRK12584, flagellin A; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|144340 pfam00700, Flagellin_C, Bacterial flagellin C-terminal helical region | Back alignment and domain information |
|---|
| >gnl|CDD|171664 PRK12688, PRK12688, flagellin; Reviewed | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| PRK08026 | 566 | flagellin; Validated | 100.0 | |
| PRK08411 | 573 | flagellin; Reviewed | 100.0 | |
| PRK13589 | 573 | flagellin; Provisional | 100.0 | |
| PRK12717 | 523 | flgL flagellar hook-associated protein FlgL; Provisiona | 100.0 | |
| PRK12718 | 510 | flgL flagellar hook-associated protein FlgL; Provisiona | 100.0 | |
| PRK08412 | 777 | flgL flagellar hook-associated protein FlgL; Validated | 100.0 | |
| pfam00669 | 139 | Flagellin_N Bacterial flagellin N-terminal helical regi | 100.0 | |
| PRK13588 | 514 | flagellin B; Provisional | 100.0 | |
| PRK12808 | 460 | flagellin; Provisional | 100.0 | |
| PRK12584 | 510 | flagellin A; Reviewed | 100.0 | |
| PRK12806 | 475 | flagellin; Provisional | 100.0 | |
| PRK06819 | 371 | flagellin; Validated | 100.0 | |
| PRK08869 | 377 | flagellin; Reviewed | 100.0 | |
| PRK12803 | 335 | flagellin; Provisional | 100.0 | |
| PRK12807 | 287 | flagellin; Provisional | 100.0 | |
| PRK12805 | 287 | flagellin; Provisional | 100.0 | |
| PRK06663 | 420 | flagellar hook-associated protein FlgL; Validated | 100.0 | |
| PRK08870 | 403 | flgL flagellar hook-associated protein FlgL; Reviewed | 100.0 | |
| PRK12687 | 311 | flagellin; Reviewed | 100.0 | |
| PRK12802 | 282 | flagellin; Provisional | 100.0 | |
| PRK12804 | 307 | flagellin; Provisional | 100.0 | |
| COG1344 | 360 | FlgL Flagellin and related hook-associated proteins [Ce | 100.0 | |
| PRK07192 | 305 | flgL flagellar hook-associated protein FlgL; Reviewed | 100.0 | |
| PRK07701 | 301 | flgL flagellar hook-associated protein FlgL; Validated | 100.0 | |
| PRK08027 | 317 | flgL flagellar hook-associated protein FlgL; Reviewed | 100.0 | |
| PRK08073 | 287 | flgL flagellar hook-associated protein FlgL; Validated | 100.0 | |
| PRK08913 | 302 | flgL flagellar hook-associated protein FlgL; Validated | 100.0 | |
| TIGR02550 | 393 | flagell_flgL flagellar hook-associated protein 3; Inter | 100.0 | |
| PRK06008 | 348 | flgL flagellar hook-associated protein FlgL; Validated | 100.0 | |
| pfam07164 | 347 | consensus | 100.0 | |
| pfam00700 | 84 | Flagellin_C Bacterial flagellin C-terminal helical regi | 99.83 | |
| PRK08471 | 612 | flgK flagellar hook-associated protein FlgK; Validated | 97.85 | |
| PRK07521 | 482 | flgK flagellar hook-associated protein FlgK; Validated | 97.59 | |
| PRK08147 | 547 | flgK flagellar hook-associated protein FlgK; Validated | 97.59 | |
| PRK12714 | 624 | flgK flagellar hook-associated protein FlgK; Provisiona | 97.47 | |
| PRK07191 | 456 | flgK flagellar hook-associated protein FlgK; Validated | 97.02 | |
| PRK06945 | 649 | flgK flagellar hook-associated protein FlgK; Validated | 96.94 | |
| PRK06665 | 628 | flgK flagellar hook-associated protein FlgK; Validated | 96.62 | |
| TIGR02492 | 495 | flgK_ends flagellar hook-associated protein FlgK; Inter | 96.5 | |
| PRK07739 | 500 | flgK flagellar hook-associated protein FlgK; Validated | 96.42 | |
| COG1256 | 552 | FlgK Flagellar hook-associated protein [Cell motility a | 95.75 | |
| PRK06799 | 431 | flgK flagellar hook-associated protein FlgK; Validated | 94.92 | |
| PRK12715 | 649 | flgK flagellar hook-associated protein FlgK; Provisiona | 93.5 | |
| PRK08871 | 626 | flgK flagellar hook-associated protein FlgK; Validated | 92.8 | |
| PRK12688 | 888 | flagellin; Reviewed | 99.67 | |
| PRK12632 | 130 | flgC flagellar basal body rod protein FlgC; Provisional | 92.79 | |
| PRK12782 | 138 | flgC flagellar basal body rod protein FlgC; Reviewed | 91.98 | |
| PRK05681 | 139 | flgC flagellar basal body rod protein FlgC; Reviewed | 91.81 |
| >PRK08026 flagellin; Validated | Back alignment and domain information |
|---|
| >PRK08411 flagellin; Reviewed | Back alignment and domain information |
|---|
| >PRK13589 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK12717 flgL flagellar hook-associated protein FlgL; Provisional | Back alignment and domain information |
|---|
| >PRK12718 flgL flagellar hook-associated protein FlgL; Provisional | Back alignment and domain information |
|---|
| >PRK08412 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >pfam00669 Flagellin_N Bacterial flagellin N-terminal helical region | Back alignment and domain information |
|---|
| >PRK13588 flagellin B; Provisional | Back alignment and domain information |
|---|
| >PRK12808 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK12584 flagellin A; Reviewed | Back alignment and domain information |
|---|
| >PRK12806 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK06819 flagellin; Validated | Back alignment and domain information |
|---|
| >PRK08869 flagellin; Reviewed | Back alignment and domain information |
|---|
| >PRK12803 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK12807 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK12805 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK06663 flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed | Back alignment and domain information |
|---|
| >PRK12687 flagellin; Reviewed | Back alignment and domain information |
|---|
| >PRK12802 flagellin; Provisional | Back alignment and domain information |
|---|
| >PRK12804 flagellin; Provisional | Back alignment and domain information |
|---|
| >COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion] | Back alignment and domain information |
|---|
| >PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed | Back alignment and domain information |
|---|
| >PRK07701 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed | Back alignment and domain information |
|---|
| >PRK08073 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >PRK08913 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >TIGR02550 flagell_flgL flagellar hook-associated protein 3; InterPro: IPR013384 FlgL (or HAP3) proteins are flagellar hook-associated proteins encoded in bacterial flagellar operons | Back alignment and domain information |
|---|
| >PRK06008 flgL flagellar hook-associated protein FlgL; Validated | Back alignment and domain information |
|---|
| >pfam07164 consensus | Back alignment and domain information |
|---|
| >pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region | Back alignment and domain information |
|---|
| >PRK08471 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK07521 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK08147 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK12714 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
|---|
| >PRK07191 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK06945 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK06665 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway | Back alignment and domain information |
|---|
| >PRK07739 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
|---|
| >PRK06799 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK12715 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
|---|
| >PRK08871 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
|---|
| >PRK12688 flagellin; Reviewed | Back alignment and domain information |
|---|
| >PRK12632 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
|---|
| >PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
|---|
| >PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| 1ucu_A | 494 | R-Type Straight Flagellar Filament Made Of Full-Len | 3e-53 | |
| 3a5x_A | 494 | L-Type Straight Flagellar Filament Made Of Full-Len | 2e-52 | |
| 3k8v_A | 351 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 7e-21 | |
| 3k8w_A | 326 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 8e-21 | |
| 3k8v_A | 351 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 3e-13 | |
| 3k8w_A | 326 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 3e-04 | |
| 2zbi_A | 292 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 0.004 | |
| 1io1_A | 398 | Crystal Structure Of F41 Fragment Of Flagellin Leng | 1e-16 | |
| 1ory_B | 55 | Flagellar Export Chaperone In Complex With Its Cogn | 2e-09 | |
| 2zbi_A | 292 | Crysatl Structure Of A Bacterial Cell-Surface Flage | 4e-09 |
| >gi|34810684|pdb|1UCU|A Chain A, R-Type Straight Flagellar Filament Made Of Full-Length Flagellin Length = 494 | Back alignment and structure |
Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 68/492 (13%), Positives = 131/492 (26%), Gaps = 43/492 (8%)
Query: 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSA 62
I TN ++ L L +R+SSGLR++ A D+AA +IA ++ L+
Sbjct: 3 VINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQ 62
Query: 63 VSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQSEITQLQSQL 119
S G S + +++ + + ++ SIQ+EITQ +++
Sbjct: 63 ASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEI 122
Query: 120 RDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDS 179
++ + FNG L D + A I Q +D + +
Sbjct: 123 DRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSD 182
Query: 180 STDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239
+ Y + + G + + +
Sbjct: 183 TAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGKD 242
Query: 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITS 299
+ + + + + + A T +T
Sbjct: 243 GYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTG 302
Query: 300 DPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAY---- 355
+ D + D S+ T T T
Sbjct: 303 TASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNK 362
Query: 356 ------------------------------------NEKLAMEEMVSFIDTQIKCATAAA 379
E + ID +
Sbjct: 363 LGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLR 422
Query: 380 GKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIV 439
+G++ +R + + + + R+ D+D A+E + +S Q QQ L+
Sbjct: 423 SDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQA 482
Query: 440 NNSTARILSLFR 451
N +LSL R
Sbjct: 483 NQVPQNVLSLLR 494
|
| >gi|291191082|pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length Flagellin Length = 494 | Back alignment and structure |
| >gi|308198489|pdb|3K8V|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin N20c20 Length = 351 | Back alignment and structure |
| >gi|308198491|pdb|3K8W|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin N20c45 Length = 326 | Back alignment and structure |
| >gi|308198489|pdb|3K8V|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin N20c20 Length = 351 | Back alignment and structure |
| >gi|308198491|pdb|3K8W|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin N20c45 Length = 326 | Back alignment and structure |
| >gi|167013356|pdb|2ZBI|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin Length = 292 | Back alignment and structure |
| >gi|13786773|pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin Length = 398 | Back alignment and structure |
| >gi|37927279|pdb|1ORY|B Chain B, Flagellar Export Chaperone In Complex With Its Cognate Binding Partner Length = 55 | Back alignment and structure |
| >gi|167013356|pdb|2ZBI|A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin Length = 292 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| 1ucu_A | 494 | Phase 1 flagellin; flagellar filament, cryo-electron mi | 2e-25 | |
| 3k8w_A | 326 | Flagellin homolog; flagellum, structural protein, bacte | 4e-13 | |
| 1ory_B | 55 | Flagellin; flagellar chaperone, cytosolic export chaper | 6e-04 |
| >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 Length = 494 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 2e-25
Identities = 75/491 (15%), Positives = 152/491 (30%), Gaps = 43/491 (8%)
Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
I TN ++ L L +R+SSGLR++ A D+AA +IA ++ L+
Sbjct: 4 INTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQA 63
Query: 64 SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQLR 120
S G S + +++ + + ++ +D SIQ+EITQ +++
Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEID 123
Query: 121 DIARGSSFNGENWLRTDLG---SSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLL 177
++ + FNG L D A+ +++ + ++ + + T++ +
Sbjct: 124 RVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDT 183
Query: 178 DSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA 237
++ G + N K L D + T A + +
Sbjct: 184 AATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGKDG 243
Query: 238 TFDQAKGIATIPVPLPAAPAAPNTTSG--------------------------------- 264
++ + V L +P T
Sbjct: 244 YYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGT 303
Query: 265 TSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTT 324
S K + I G + + D + +T + +
Sbjct: 304 ASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKL 363
Query: 325 LDSRKDLPKEIDSGYSM----VTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAG 380
+ G + + + A E + ID +
Sbjct: 364 GGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRS 423
Query: 381 KIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVN 440
+G++ +R + + + + R+ D+D A+E + +S Q QQ L+ N
Sbjct: 424 DLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQAN 483
Query: 441 NSTARILSLFR 451
+LSL R
Sbjct: 484 QVPQNVLSLLR 494
|
| >3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A Length = 326 | Back alignment and structure |
|---|
| >1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} Length = 55 | Back alignment and structure |
|---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| 1ucu_A | 494 | Phase 1 flagellin; flagellar filament, cryo-electron mi | 100.0 | |
| 3k8w_A | 326 | Flagellin homolog; flagellum, structural protein, bacte | 100.0 | |
| 2d4x_A | 248 | Flagellar HOOK-associated protein 3; multi-domain prote | 100.0 | |
| 3k1i_C | 178 | HP1076, putative uncharacterized protein; CO-chaperone, | 92.43 | |
| 1io1_A | 398 | Phase 1 flagellin; beta-folium, structural protein; 2.0 | 100.0 | |
| 3k1h_A | 158 | HP1076, putative uncharacterized protein; FLIS interact | 99.33 | |
| 1ory_B | 55 | Flagellin; flagellar chaperone, cytosolic export chaper | 99.52 | |
| 2d4y_A | 463 | HAP1, flagellar HOOK-associated protein 1; multi-domain | 95.3 |
| >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=0 Score=483.03 Aligned_cols=447 Identities=17% Similarity=0.149 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
++|+||+++++++++|++.+++|.++||||||||||++|+|||++++++++||+++.+++||+||+.++++||+++|++|
T Consensus 2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L 81 (494)
T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL 81 (494)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09975199999999999999999999998601586588320589999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+++.++|+|||||+||++|++ .||++++.|+++|++||++|+++++|||+|||+|+.....+.+.............
T Consensus 82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~ 161 (494)
T 1ucu_A 82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ 161 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC
T ss_conf 99999999999999976168876455777788999988777776545421413320114542278752157225640233
Q ss_pred CCCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3322222-2222135433333--221111111112233322345443------322211112222112222222221111
Q gi|254780531|r 159 GKVQITT-IDYYLDPETVLLD--SSTDGTERYGLLDRNHKIKVEPQV------LKDIDVSVYDASGTISTKKFKLATTSG 229 (452)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (452)
....... ............. ........................ .................. ... ....
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (494)
T 1ucu_A 162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAK-VTV-TGGT 239 (494)
T ss_dssp CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEE-EEE-ETCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-EEE-ECCC
T ss_conf 33222465310134444555420010023310233024421111234323221013320222011100000-122-0132
Q ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCCC-------CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111101001122210------123333443-------322222332222210000012234444321100123321
Q gi|254780531|r 230 AWLKAANATFDQAKGIATI------PVPLPAAPA-------APNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNS 296 (452)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (452)
................... ......... .................... ..................
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~ 318 (494)
T 1ucu_A 240 GKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGV-TGTASVVKMSYTDNNGKT 318 (494)
T ss_dssp SCCEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTC-CSCEEEEEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCEE
T ss_conf 4332212222445553000234433333443220223334310023332223321000243-332210001320332101
Q ss_pred CCCCCCC-------C-----CCCCC--CCCCCCCCCCCCCCCC--CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1100000-------0-----00111--1111122344443322--3222333-----22222100000122334443210
Q gi|254780531|r 297 ITSDPGY-------T-----NSTVA--KVGNTHYYVDTESTTL--DSRKDLP-----KEIDSGYSMVTLNITRHANTDAY 355 (452)
Q Consensus 297 ~~~~~~~-------~-----~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 355 (452)
....... . ..... ................ ....... .......................
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (494)
T 1ucu_A 319 IDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAE 398 (494)
T ss_dssp EEEEEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 01443223342100012344543123442000222034432100112234320000343111123332011221001213
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000578999999999999999999878999999999999999999997306222025899999999999999999999
Q gi|254780531|r 356 NEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQA 435 (452)
Q Consensus 356 ~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~ 435 (452)
.....+..+|..||.|+++|...|++|||++||||+.++++.+..+|+++++|+|+|+|||||+++|+|+||+||||++|
T Consensus 399 ~t~~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~ 478 (494)
T 1ucu_A 399 AAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSV 478 (494)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43788999999999999999999999879999999999999999999999854577140999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999720688987525
Q gi|254780531|r 436 LSIVNNSTARILSLFR 451 (452)
Q Consensus 436 laqan~~~~~vL~L~~ 451 (452)
|+||||.||.||+|||
T Consensus 479 laqAn~~~q~vl~Ll~ 494 (494)
T 1ucu_A 479 LAQANQVPQNVLSLLR 494 (494)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHCCCHHHHHHHCC
T ss_conf 9997526789998409
|
| >3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A | Back alignment and structure |
|---|
| >2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3k1i_C HP1076, putative uncharacterized protein; CO-chaperone, chaperone, flagellar system, helicobacter PYLO flagellum; 2.70A {Helicobacter pylori} | Back alignment and structure |
|---|
| >1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1 | Back alignment and structure |
|---|
| >3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori} | Back alignment and structure |
|---|
| >1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} | Back alignment and structure |
|---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| d1io1a_ | 395 | Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371 | 100.0 |
| >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Phase 1 flagellin superfamily: Phase 1 flagellin family: Phase 1 flagellin domain: Phase 1 flagellin species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.3e-37 Score=240.60 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999999999999999999999999999875303776---303567889999999999986300121100
Q gi|254780531|r 56 DNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGEN 132 (452)
Q Consensus 56 ~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~ 132 (452)
+|++|+|++||++++++|||++|++|+++++||+|||||+||++|++ .||++|+.|+++|++||++|+++|+|||++
T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 13566654322334
Q gi|254780531|r 133 WLRTDLGSSTASIA 146 (452)
Q Consensus 133 l~~g~~~~~~~~~~ 146 (452)
||+|+.... ++.+
T Consensus 81 Ll~Gs~~~~-~~~g 93 (395)
T d1io1a_ 81 VLAQDNTLT-IQVG 93 (395)
T ss_dssp TTTSCEEEE-EECS
T ss_pred CCCCCCCEE-EEEC
T ss_conf 235567258-9724
|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 452 | flagellin domain-containing protein [Candidatus Li | ||
| 1ucu_A_41-169_400-454 | 184 | (A:41-169,A:400-454) Phase 1 flagellin; flagellar | 1e-10 | |
| 2d4x_A_ | 248 | (A:) Flagellar HOOK-associated protein 3; multi-do | 2e-08 | |
| 1io1_A_1-117_348-398 | 168 | (A:1-117,A:348-398) Phase 1 flagellin; beta-folium | 2e-08 | |
| 2zbi_A_1-113_232-292 | 174 | (A:1-113,A:232-292) Flagellin homolog; flagellum, | 4e-08 |
| >1ucu_A (A:41-169,A:400-454) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}Length = 184 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 42 DNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---G 98
D+AA +IA ++ L+ S G S + +++ + + ++
Sbjct: 2 DDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS 61
Query: 99 VERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134
+D SIQ+EITQ +++ ++ + FNG L
Sbjct: 62 TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVL 97
|
| >2d4x_A (A:) Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}Length = 248 | Back alignment and structure |
|---|
| >1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium}Length = 168 | Back alignment and structure |
|---|
| >2zbi_A (A:1-113,A:232-292) Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP}Length = 174 | Back alignment and structure |
|---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 452 | flagellin domain-containing protein [Candidatus Liberib | ||
| 1ucu_A_41-169_400-454 | 184 | Phase 1 flagellin; flagellar filament, cryo-electr | 100.0 | |
| 2d4x_A_ | 248 | Flagellar HOOK-associated protein 3; multi-domain | 100.0 | |
| 2zbi_A_1-113_232-292 | 174 | Flagellin homolog; flagellum, structural protein; | 99.97 | |
| 1io1_A_1-117_348-398 | 168 | Phase 1 flagellin; beta-folium, structural protein | 99.97 | |
| 1ory_B_ | 55 | Flagellin; flagellar chaperone, cytosolic export c | 99.55 | |
| 1ucu_A_1-40_455-494 | 80 | Phase 1 flagellin; flagellar filament, cryo-electr | 99.35 | |
| 1ucu_A_1-40_455-494 | 80 | Phase 1 flagellin; flagellar filament, cryo-electr | 98.41 |
| >1ucu_A (A:41-169,A:400-454) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=231.28 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=149.6
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH
Q ss_conf 13899999999999999999999998999999999999999999999999999875303776---303567889999999
Q gi|254780531|r 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQS 117 (452)
Q Consensus 41 sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~ 117 (452)
||||++++++++|++++.+++||.+|++++.+||+++|++|.+++++|+|||||+||++|++ .||.+++.|+++|++
T Consensus 1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~ 80 (184)
T 1ucu_A 1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 80 (184)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10699999999999999999999999999999999999999999999999999999761688765668888877555555
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998630012110013566654322334332221112333332222222221354333332211111111122333223
Q gi|254780531|r 118 QLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIK 197 (452)
Q Consensus 118 ~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
+|.+|+++++|||+|||+|+.....++..........
T Consensus 81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~------------------------------------------- 117 (184)
T 1ucu_A 81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDI------------------------------------------- 117 (184)
T ss_dssp HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEE-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEE-------------------------------------------
T ss_conf 5555542456655432144554315521444411231-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 45443322211112222112222222221111111111110100112221012333344332222233222221000001
Q gi|254780531|r 198 VEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASA 277 (452)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452)
..
T Consensus 118 --------------------~~---------------------------------------------------------- 119 (184)
T 1ucu_A 118 --------------------DL---------------------------------------------------------- 119 (184)
T ss_dssp --------------------EE----------------------------------------------------------
T ss_pred --------------------CC----------------------------------------------------------
T ss_conf --------------------03----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22344443211001233211100000000111111112234444332232223332222210000012233444321000
Q gi|254780531|r 278 TYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNE 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452)
..........+
T Consensus 120 ---------------------------------------------------------------------~~~~~~~~~~~ 130 (184)
T 1ucu_A 120 ---------------------------------------------------------------------KQINSQTLGLA 130 (184)
T ss_dssp ---------------------------------------------------------------------CCCSTTTTTCC
T ss_pred ---------------------------------------------------------------------CCCCCCCCCCH
T ss_conf ---------------------------------------------------------------------33332223324
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 000578999999999999999999878999999999999999999997306222
Q gi|254780531|r 358 KLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLV 411 (452)
Q Consensus 358 ~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~ 411 (452)
...+..+|..||.|+..|...|+++||.|||||+.++++....+|+++++||||
T Consensus 131 ~~~a~~~~~~~d~ai~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~ 184 (184)
T 1ucu_A 131 ATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE 184 (184)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788999999999999999999999879999999999999999999999854687
|
| >2d4x_A (A:) Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2zbi_A (A:1-113,A:232-292) Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP} | Back alignment and structure |
|---|
| >1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1ory_B (B:) Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} | Back alignment and structure |
|---|