254780591

254780591

aminomethyltransferase protein (glycine cleavage)

GeneID in NCBI database:8209588Locus tag:CLIBASIA_02390
Protein GI in NCBI database:254780591Protein Accession:YP_003065004.1
Gene range:-(692688, 693509)Protein Length:273aa
Gene description:aminomethyltransferase protein (glycine cleavage)
COG prediction:[R] Predicted aminomethyltransferase related to GcvT
KEGG prediction:aminomethyltransferase protein (glycine cleavage); K06980
SEED prediction:Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
cccccccccEEEEEEcHHHHHHHHHHccccccccccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEcHHHHHHHHHHHHHccHHccEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccHHHHccHHHccccccccccccHHHHHHHHHcccccEEEEEEEccccccccccEEEEccEEEEEEEEccccEEEEEEEHHHHcccccccccEEEccEEEEEEcccccc
ccEEEccccEEEEEEcccHHHHHHHHHcccHHHccccccEEEEEEcccccEEEEEEEEEcccccEEEEccHHHHHHHHHHHHHHEHEEEEEEccccccEEEEEEcccccccccccccccccHccccHHHHHcccccccccHHHHHHHHHHcccccccccccccccccHHHcHHHcccEEccccccccHEHHEEHHHcccccEEEEEEEccccccccccEEEcccccccEEEEcccccEEEEEEHHHHHHHHHccccEEcccEEEEcccccHcc
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTlpykiargsailtpQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWnqehtfsnssfidERFSIADVLLHRtwghnekiaSDIKTYHELRinhgivdpntdflpstifphDALMDLLNGISLTKGCYIGQEVVSRIQHrniirkrpmiitgtddlppsgspiltddieigtLGVVVGKKALAIARIDKVDHAIKKGMALTvhgvrvkasfphwyk
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIArgsailtpqGKILLYFLISKIEEDTFIleidrskrdsLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVsriqhrniirkrpmiitgtddlppsgSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGmaltvhgvrvkasfphwyk
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
*SSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
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MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
315121784271 aminomethyltransferase protein (glycine cleavage) [Cand 1 1e-110
222085402279 aminomethyltransferase protein (glycine cleavage) [Agro 1 3e-53
86357042281 putative aminomethyltransferase protein (glycine cleava 1 2e-52
325292432282 glycine cleavage system T protein, aminomethyltransfera 1 2e-51
190891087290 aminomethyltransferase (glycine cleavage) protein [Rhiz 1 2e-51
241203903284 folate-binding protein YgfZ [Rhizobium leguminosarum bv 1 1e-49
15888395282 glycine cleavage system T protein, aminomethyltransfera 1 2e-49
209548616284 folate-binding protein YgfZ [Rhizobium leguminosarum bv 1 3e-49
163760578272 glycine cleavage system T protein, aminomethyltransfera 1 2e-48
116251291287 aminomethyltransferase [Rhizobium leguminosarum bv. vic 1 2e-47
>gi|315121784|ref|YP_004062273.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 271 Back     alignment and organism information
 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/271 (69%), Positives = 229/271 (84%)

Query: 1   MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60
           M SVYLS+QSFIKV GKSA  FLQ IITAD+ +LP+ +ARGSA+LTPQGKIL YFLISKI
Sbjct: 1   MPSVYLSSQSFIKVRGKSASTFLQGIITADITSLPFDVARGSALLTPQGKILFYFLISKI 60

Query: 61  EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120
           EED F+LEI++ +RDS I+KLLFYKLRS+V +E+QPING+ LSWNQE   ++ SFIDERF
Sbjct: 61  EEDVFVLEINKLQRDSFIEKLLFYKLRSDVALEVQPINGITLSWNQEQAPTSPSFIDERF 120

Query: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180
           SIA +LLHRTWG+NE+  SD K YHELRIN+GIV+P  DF PSTIFPHDALMDL+ GIS 
Sbjct: 121 SIAGILLHRTWGYNEESTSDPKEYHELRINYGIVEPIPDFPPSTIFPHDALMDLVKGISF 180

Query: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240
           TKGCY+GQEVVSR+QHRNI+RKRP+IITG + LP +GS +  D+ +IGTLG++VG+KALA
Sbjct: 181 TKGCYVGQEVVSRMQHRNIVRKRPIIITGYNALPANGSSLFVDNTKIGTLGIIVGEKALA 240

Query: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHW 271
           IARIDKV +AI+K MALT  G++V  + P W
Sbjct: 241 IARIDKVSNAIEKNMALTADGIKVTITLPPW 271



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222085402|ref|YP_002543932.1| aminomethyltransferase protein (glycine cleavage) [Agrobacterium radiobacter K84] Length = 279 Back     alignment and organism information
>gi|86357042|ref|YP_468934.1| putative aminomethyltransferase protein (glycine cleavage) [Rhizobium etli CFN 42] Length = 281 Back     alignment and organism information
>gi|325292432|ref|YP_004278296.1| glycine cleavage system T protein, aminomethyltransferase [Agrobacterium sp. H13-3] Length = 282 Back     alignment and organism information
>gi|190891087|ref|YP_001977629.1| aminomethyltransferase (glycine cleavage) protein [Rhizobium etli CIAT 652] Length = 290 Back     alignment and organism information
>gi|241203903|ref|YP_002974999.1| folate-binding protein YgfZ [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 284 Back     alignment and organism information
>gi|15888395|ref|NP_354076.1| glycine cleavage system T protein, aminomethyltransferase [Agrobacterium tumefaciens str. C58] Length = 282 Back     alignment and organism information
>gi|209548616|ref|YP_002280533.1| folate-binding protein YgfZ [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 284 Back     alignment and organism information
>gi|163760578|ref|ZP_02167659.1| glycine cleavage system T protein, aminomethyltransferase [Hoeflea phototrophica DFL-43] Length = 272 Back     alignment and organism information
>gi|116251291|ref|YP_767129.1| aminomethyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 287 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
KOG2929348 KOG2929, KOG2929, KOG2929, Transcription factor, compon 3e-32
COG0404379 COG0404, GcvT, Glycine cleavage system T protein (amino 3e-07
KOG2770401 KOG2770, KOG2770, KOG2770, Aminomethyl transferase [Ami 0.001
COG0354305 COG0354, COG0354, Predicted aminomethyltransferase rela 5e-44
TIGR0331767 TIGR03317, ygfZ_signature, folate-binding protein YgfZ 8e-16
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-binding 2e-09
pfam0866995 pfam08669, GCV_T_C, Glycine cleavage T-protein C-termin 1e-07
PRK09559327 PRK09559, PRK09559, putative global regulator; Reviewed 6e-05
>gnl|CDD|38140 KOG2929, KOG2929, KOG2929, Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information
>gnl|CDD|30753 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|37981 KOG2770, KOG2770, KOG2770, Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|30703 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>gnl|CDD|163214 TIGR03317, ygfZ_signature, folate-binding protein YgfZ Back     alignment and domain information
>gnl|CDD|144970 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information
>gnl|CDD|149654 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>gnl|CDD|181953 PRK09559, PRK09559, putative global regulator; Reviewed Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 273 aminomethyltransferase protein (glycine cleavage) [Cand
PRK00389362 gcvT glycine cleavage system aminomethyltransferase T; 100.0
COG0404379 GcvT Glycine cleavage system T protein (aminomethyltran 100.0
PRK12486367 dmdA putative dimethyl sulfoniopropionate demethylase; 100.0
PRK13579371 gcvT glycine cleavage system aminomethyltransferase T; 100.0
TIGR00528394 gcvT glycine cleavage system T protein; InterPro: IPR00 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [Gener 100.0
PRK09559327 putative global regulator; Reviewed 100.0
TIGR013721026 soxA sarcosine oxidase, alpha subunit family; InterPro: 100.0
KOG2929348 consensus 100.0
KOG2770401 consensus 99.97
KOG2844856 consensus 99.97
pfam01571212 GCV_T Aminomethyltransferase folate-binding domain. Thi 99.89
pfam0866995 GCV_T_C Glycine cleavage T-protein C-terminal barrel do 99.28
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ is a p 98.22
pfam04268148 SoxG Sarcosine oxidase, gamma subunit family. Sarcosine 96.97
COG0486 454 ThdF Predicted GTPase [General function prediction only 96.92
pfam10396114 TrmE_N GTP-binding protein TrmE N-terminus. This family 96.67
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transport a 96.67
PRK05291 445 trmE tRNA modification GTPase TrmE; Reviewed 96.39
TIGR01375154 soxG sarcosine oxidase, gamma subunit family; InterPro: 96.34
TIGR00450 473 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 90.68
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein; InterPro: IPR006223 This is a subfamily of glycine cleavage T proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases Back     alignment and domain information
>KOG2929 consensus Back     alignment and domain information
>KOG2770 consensus Back     alignment and domain information
>KOG2844 consensus Back     alignment and domain information
>pfam01571 GCV_T Aminomethyltransferase folate-binding domain Back     alignment and domain information
>pfam08669 GCV_T_C Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>pfam04268 SoxG Sarcosine oxidase, gamma subunit family Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family; InterPro: IPR006280 These sequences represent the gamma subunit of a family of known and putative heterotetrameric sarcosine oxidases Back     alignment and domain information
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 8e-28
1woo_A364 Crystal Structure Of T-Protein Of The Glycine Cleav 3e-27
1v5v_A401 Crystal Structure Of A Component Of Glycine Cleavag 3e-19
3gir_A393 Crystal Structure Of Glycine Cleavage System Aminom 1e-18
3a8i_A364 Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len 5e-18
3a8k_A364 Crystal Structure Of Etd97n-Ehred Complex Length = 3e-17
1vlo_A381 Crystal Structure Of Aminomethyltransferase (T Prot 5e-16
1pj5_A830 Crystal Structure Of Dimethylglycine Oxidase Of Art 1e-13
1wsr_A375 Crystal Structure Of Human T-Protein Of Glycine Cle 1e-13
3gsi_A827 Crystal Structure Of D552a Dimethylglycine Oxidase 1e-12
2gag_A965 Heteroteterameric Sarcosine: Structure Of A Diflavi 2e-10
2gah_A965 Heterotetrameric Sarcosine: Structure Of A Diflavin 5e-09
1vrq_A964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 4e-10
1nrk_A328 Ygfz Protein Length = 328 6e-09
1vly_A338 Crystal Structure Of A Putative Aminomethyltransfer 6e-09
>gi|62738815|pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure 
 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 82/313 (26%), Gaps = 47/313 (15%)

Query: 7   SNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFI 66
           S+   ++V G  ++ FLQ + T DV  L    A+ +A   P G  +   LI +  E+ ++
Sbjct: 53  SHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENRYL 112

Query: 67  LEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNS------------S 114
           L I+ S  D  +     +      I   Q     +L+       +               
Sbjct: 113 LVINASNIDKDLAWXKEHAAGDVQID-NQSDQIALLAVQGPKAEAILKNLTDADVSALKP 171

Query: 115 FIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHD----- 169
           F     +                    + Y        I     D   +           
Sbjct: 172 FAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGLGAR 231

Query: 170 -----------------------ALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMI 206
                                              +  + G+ V+S  +     RK   +
Sbjct: 232 DTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAKRKLVGL 291

Query: 207 ITGTDDLPPSGSPILTDDIEIGTLGVVVG------KKALAIARIDKVDHAIKKGMALTVH 260
                 +P  G  +  +   +G +              LA+   +  +      + +   
Sbjct: 292 EXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKK 351

Query: 261 GVRVKASFPHWYK 273
            V+ K     +YK
Sbjct: 352 LVKAKVVKTPFYK 364
gi|55670726|pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
gi|56554253|pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>gi|225698148|pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393 Back     alignment and structure
gi|293651790|pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 364 Back     alignment and structure
>gi|293651802|pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex Length = 364 Back     alignment and structure
>gi|55670453|pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein; Tetrahydrofolate-Dependent) Of Glycine Cleavage System (Np417381) From Escherichia Coli K12 At 1.70 A Resolution Length = 381 Back     alignment and structure
>gi|37927479|pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>gi|75765383|pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure
>gi|226887919|pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>gi|114794036|pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>gi|114794040|pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>gi|71041783|pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure
>gi|47168424|pdb|1NRK|A Chain A, Ygfz Protein Length = 328 Back     alignment and structure
>gi|52696236|pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase (Ygfz) From Escherichia Coli At 1.30 A Resolution Length = 338 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898 1e-16
1yx2_A365 Aminomethyltransferase; glycine cleavage system T prote 4e-05
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD binding, 5e-09
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; flavo 2e-06
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, structu 2e-04
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
 Score = 82.0 bits (201), Expect = 1e-16
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 35/294 (11%)

Query: 6   LSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTF 65
           L + +   + G  +  ++Q  +TADV  +       +A    +GK+     + +  +   
Sbjct: 36  LDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFA 95

Query: 66  ILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSI--- 122
            +E    +   L +   +       I        + ++  Q      + F +        
Sbjct: 96  WIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQV 155

Query: 123 ------------------------ADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNT 158
                                   A   +       E   ++ + +  L I  G    + 
Sbjct: 156 VKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVID- 214

Query: 159 DFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDD-LPPSG 217
                   P    +  L GIS  KGCY GQE+V+R + R   ++   ++ G+   LP +G
Sbjct: 215 AANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAG 274

Query: 218 SPILT----DDIEIGTL--GVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVK 265
             +      +    GT+   V +    + +  +   D        +      + 
Sbjct: 275 EDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLH 328
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Length = 965 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
1yx2_A365 Aminomethyltransferase; glycine cleavage system T prote 100.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, structu 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898 100.0
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD binding, 100.0
3gir_A393 Aminomethyltransferase; glycine cleavage system, aminot 100.0
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; flavo 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermotoga ma 100.0
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2.00A { 100.0
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolate-depe 100.0
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric sarco 98.66
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; flavo 98.34
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric sarco 96.66
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; flavo 96.31
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cytopla 95.57
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U34, cy 95.27
1xzp_A 482 Probable tRNA modification GTPase TRME; GTP-binding, TH 94.16
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=2.2e-42  Score=265.25  Aligned_cols=264  Identities=17%  Similarity=0.163  Sum_probs=193.9

Q ss_pred             EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf             76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r    4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF   83 (273)
Q Consensus         4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (273)
                      +=+|+++.|+|+|+||.+|||+++||||++|++|++.||+|||++|+|++|++|+|++++.|+++.+.........++..
T Consensus        50 ~D~S~~~~i~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~l~~~G~ii~D~~v~~~~e~~~~l~~~~~~~~~~~~~l~~  129 (365)
T 1yx2_A           50 FDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKE  129 (365)
T ss_dssp             EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHH
T ss_pred             EECCCCEEEEEECCCHHHHHHHHHHHCCEECCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHH
T ss_conf             97897189999879999999876141442137984898887658897765379998047860676145667767788763


Q ss_pred             HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-------------------------CCCCHHHHHH-------
Q ss_conf             21000122356884369999718543222111234566-------------------------4441012221-------
Q gi|254780591|r   84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS-------------------------IADVLLHRTW-------  131 (273)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~-------  131 (273)
                      .... .+.+.+.++.+..++++||+++...........                         ..++..+.++       
T Consensus       130 ~~~~-~~~~~~~~~~~~~~~l~GP~s~~~l~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~R~g~tGe~G~el~~~~~~~~  208 (365)
T 1yx2_A          130 HAAG-DVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAM  208 (365)
T ss_dssp             TCCS-SCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHH
T ss_pred             CCCC-CCEEEECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECCCHHHHH
T ss_conf             3378-609998768788898787660332012467410123541202578988918999946767887347416789999


Q ss_pred             ----------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             ----------013555579678888887520133456543221233100111220133147-521331013210012444
Q gi|254780591|r  132 ----------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK-GCYIGQEVVSRIQHRNII  200 (273)
Q Consensus       132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~f~G~e~~~~~~~~~~~  200 (273)
                                ........+...++..+.+.+.+.+..+...   ...+....+.+.++..| +||+|||++.+++..+..
T Consensus       209 ~l~~~l~~aG~~~g~~p~G~~a~~~lRiE~g~~~~g~D~~~---~~~P~EagL~~~i~~~k~~~fiG~eal~~~~~~g~~  285 (365)
T 1yx2_A          209 HIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTR---DITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAK  285 (365)
T ss_dssp             HHHHHHHHHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBST---TCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHHCCS
T ss_pred             HHHHHHHHCCHHHCCEECCHHHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf             99999996127519988668787577886488766865778---899678788735765786552208999999864997


Q ss_pred             CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCC
Q ss_conf             347887401345667898872467796799983478------3368998131036656786488688--89999748876
Q gi|254780591|r  201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWY  272 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~  272 (273)
                      ++++++....+..+..|++|+.+|+.||.|||+++|      +||||++.++...+..  +++.+.+  ++++|+++|||
T Consensus       286 rrlvgl~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~lg~~Iala~v~~~~a~~g~~--l~v~~~g~~~~a~V~~~Pfy  363 (365)
T 1yx2_A          286 RKLVGLEMIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTV--VDVEIRKKLVKAKVVKTPFY  363 (365)
T ss_dssp             EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCE--EEEEETTEEEEEEEECCCC-
T ss_pred             EEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECHHCCEEEEEEEECHHHCCCCCE--EEEEECCEEEEEEEECCCCC
T ss_conf             5999999568878899997988990899941588973059289999998021589988--99999999999999888886


Q ss_pred             C
Q ss_conf             9
Q gi|254780591|r  273 K  273 (273)
Q Consensus       273 ~  273 (273)
                      |
T Consensus       364 ~  364 (365)
T 1yx2_A          364 K  364 (365)
T ss_dssp             -
T ss_pred             C
T ss_conf             7
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 273 aminomethyltransferase protein (glycine cleavage) [Cand
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-termin 3e-21
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domai 7e-04
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 3e-21
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 28/224 (12%)

Query: 1   MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60
           ++ + L + +   + G  +  ++Q  +TADV  +       +A    +GK+     + + 
Sbjct: 17  LTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD 76

Query: 61  EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQ---------PINGVVLSWNQEHTFS 111
            +    +E    +   L +   +       I                   L+       S
Sbjct: 77  GDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPS 136

Query: 112 NSSFIDERFSIADVLLHRTWGHNEKIAS------------------DIKTYHELRINHGI 153
               + +  +   +           +                    + + +  L I  G 
Sbjct: 137 KEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGF 196

Query: 154 VDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHR 197
              +         P    +  L GIS  KGCY GQE+V+R + R
Sbjct: 197 PVIDAA-NSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFR 239
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Escherich 99.97
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter glob 99.95
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotoga mar 99.94
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcus hor 99.94
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherichia co 99.94
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcus hor 99.07
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotoga mar 99.04
d1vloa190 Glycine cleavage system T protein, GcvT {Escherichia co 98.79
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Arthrob 98.73
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritima [Ta 94.73
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.8e-31  Score=199.01  Aligned_cols=195  Identities=19%  Similarity=0.229  Sum_probs=133.4

Q ss_pred             CEEECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHH
Q ss_conf             41761794079998758787863213267310899826899999799988998999970455520000333334567776
Q gi|254780591|r    2 SSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKL   81 (273)
Q Consensus         2 ~~~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~   81 (273)
                      ..+-|++|++|+|+|+||.+|||+|+||||++|++|+++||+|||++|||++|++|+|.+++.++++..+... ....++
T Consensus        18 ~l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~~t~~ln~kGri~~d~~i~~~~~~~~l~~~~~~~~-~~~~~l   96 (241)
T d1vlya2          18 TLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVRE-PQLTEL   96 (241)
T ss_dssp             EEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHH-HHHHHH
T ss_pred             EEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEHHHHHHH-HHHHHH
T ss_conf             6997798569999888999997377642610169997873310156675999877752233202111134568-888877


Q ss_pred             HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH-----------------HH------------HHC
Q ss_conf             4321000122356884369999718543222111234566444101-----------------22------------210
Q gi|254780591|r   82 LFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLL-----------------HR------------TWG  132 (273)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~~------------~~~  132 (273)
                      .......++.+.+ ++.+..+.++||.++.................                 ..            ...
T Consensus        97 ~~~~~~~~v~i~~-~~~~~~~~l~gp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (241)
T d1vlya2          97 KKYAVFSKVTIAP-DDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKL  175 (241)
T ss_dssp             HTTCSSSSCEEEE-ECSSEEEEEESTTHHHHHHTTSSCCCBTTBCEEEETTEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred             HHHCCCCEEEEEC-CHHHEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCHHHHHHHHHHH
T ss_conf             6530252146511-300103431273079999861544344344212110146530367876345307788999999876


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             1355557967888888752013345654322123310011122013314752133101321001244
Q gi|254780591|r  133 HNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNI  199 (273)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~  199 (273)
                      .......+...|+..+.+.+.+....... ....+.........+++++||||+|||.++|++++|.
T Consensus       176 ~~~~~~~~~~~~~~lRie~g~p~~~~e~~-~~~~P~E~gLd~~~~Vsf~KGCY~GQE~vAR~~~rG~  241 (241)
T d1vlya2         176 RGEAELNNSQQWLALNIEAGFPVIDAANS-GQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGA  241 (241)
T ss_dssp             BTTBEEECHHHHHHHHHHHTCCCCCGGGT-TSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTS
T ss_pred             HHHCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             42112466668999999809862385577-8774888296002699989999675999999985299
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 273 aminomethyltransferase protein (glycine cleavage)
1vly_A_199-338140 (A:199-338) SPOT PR51, unknown protein from 2D-PAG 6e-12
1pj5_A_687-830144 (A:687-830) N,N-dimethylglycine oxidase; channelli 8e-10
1wos_A_221-364144 (A:221-364) Aminomethyltransferase; T-protein; 1.8 8e-08
1wos_A_50-13990 (A:50-139) Aminomethyltransferase; T-protein; 1.84 7e-12
1wsr_A_55-14894 (A:55-148) Aminomethyltransferase; glycine-cleavag 7e-12
3gir_A_83-17189 (A:83-171) Aminomethyltransferase; glycine cleavag 1e-11
1v5v_A_55-14995 (A:55-149) Aminomethyltransferase; glycine-cleavag 1e-11
1vlo_A_63-15290 (A:63-152) Aminomethyltransferase; NP417381, tetra 2e-10
1pj5_A_508-60093 (A:508-600) N,N-dimethylglycine oxidase; channelli 8e-10
1yx2_A_55-14288 (A:55-142) Aminomethyltransferase; glycine cleavag 2e-09
2gag_A_632-72493 (A:632-724) Heterotetrameric sarcosine oxidase alp 2e-09
1vly_A_38-12588 (A:38-125) SPOT PR51, unknown protein from 2D-PAGE 7e-08
1vlo_A_1-62_153-289_367-381214 (A:1-62,A:153-289,A:367-381) Aminomethyltransferas 1e-07
2gag_A_847-965119 (A:847-965) Heterotetrameric sarcosine oxidase alp 2e-04
>1vly_A (A:199-338) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}Length = 140 Back     alignment and structure
 Score = 65.8 bits (160), Expect = 6e-12
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 142 KTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIR 201
           + +  L I  G    +       I P    +  L GIS  KGCY GQE V+R + R   +
Sbjct: 1   QQWLALNIEAGFPVIDAANSGQFI-PQATNLQALGGISFKKGCYTGQEXVARAKFRGANK 59

Query: 202 KRPMIITGTDD-LPPSGSPILTDDIEIG------TLGVVVGKKALAIARIDKVDHAIKKG 254
           +   ++ G+   LP +G  +     E           V +    + +  +   D      
Sbjct: 60  RALWLLAGSASRLPEAGEDLELKXGENWRRTGTVLAAVKLEDGQVVVQVVXNNDXEP--D 117

Query: 255 MALTVHGVRVKA 266
               V       
Sbjct: 118 SIFRVRDDANTL 129
>1pj5_A (A:687-830) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis}Length = 144 Back     alignment and structure
>1wos_A (A:221-364) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}Length = 144 Back     alignment and structure
>1wos_A (A:50-139) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}Length = 90 Back     alignment and structure
>1wsr_A (A:55-148) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*Length = 94 Back     alignment and structure
>3gir_A (A:83-171) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}Length = 89 Back     alignment and structure
>1v5v_A (A:55-149) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii}Length = 95 Back     alignment and structure
>1vlo_A (A:63-152) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12}Length = 90 Back     alignment and structure
>1pj5_A (A:508-600) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis}Length = 93 Back     alignment and structure
>1yx2_A (A:55-142) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}Length = 88 Back     alignment and structure
>2gag_A (A:632-724) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A*Length = 93 Back     alignment and structure
>1vly_A (A:38-125) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}Length = 88 Back     alignment and structure
>1vlo_A (A:1-62,A:153-289,A:367-381) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12}Length = 214 Back     alignment and structure
>2gag_A (A:847-965) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A*Length = 119 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target273 aminomethyltransferase protein (glycine cleavage) [Cand
1wsr_A_55-14894 Aminomethyltransferase; glycine-cleavage sytem; 2. 99.86
1wos_A_50-13990 Aminomethyltransferase; T-protein; 1.84A {Thermoto 99.84
3gir_A_83-17189 Aminomethyltransferase; glycine cleavage system, a 99.84
1vlo_A_63-15290 Aminomethyltransferase; NP417381, tetrahydrofolate 99.82
2gag_A_632-72493 Heterotetrameric sarcosine oxidase alpha-subunit; 99.81
1yx2_A_55-14288 Aminomethyltransferase; glycine cleavage system T 99.81
1pj5_A_508-60093 N,N-dimethylglycine oxidase; channelling, FAD bind 99.8
1vly_A_38-12588 SPOT PR51, unknown protein from 2D-PAGE; 1789265, 99.79
1v5v_A_55-14995 Aminomethyltransferase; glycine-cleavage sytem, st 99.78
1x31_C_1-36_118-206125 Sarcosine oxidase gamma subunit; heterotetrameric 96.14
2gag_C_1-38_120-210129 Heterotetrameric sarcosine oxidase gamma-subunit; 95.94
1pj5_A_425-507_601-686169 N,N-dimethylglycine oxidase; channelling, FAD bind 94.85
1wos_A_30-49_140-220101 Aminomethyltransferase; T-protein; 1.84A {Thermoto 94.27
1yx2_A_1-54_143-255167 Aminomethyltransferase; glycine cleavage system T 91.5
2gag_A_559-631_725-846195 Heterotetrameric sarcosine oxidase alpha-subunit; 90.68
1vly_A_199-338140 SPOT PR51, unknown protein from 2D-PAGE; 1789265, 99.62
1pj5_A_687-830144 N,N-dimethylglycine oxidase; channelling, FAD bind 99.61
1wos_A_221-364144 Aminomethyltransferase; T-protein; 1.84A {Thermoto 99.6
2gag_A_847-965119 Heterotetrameric sarcosine oxidase alpha-subunit; 99.4
1yx2_A_284-36582 Aminomethyltransferase; glycine cleavage system T 99.05
1v5v_A_312-40190 Aminomethyltransferase; glycine-cleavage sytem, st 99.02
1wsr_A_288-37588 Aminomethyltransferase; glycine-cleavage sytem; 2. 99.0
3gir_A_307-39387 Aminomethyltransferase; glycine cleavage system, a 98.78
1vlo_A_290-36677 Aminomethyltransferase; NP417381, tetrahydrofolate 98.27
1vlo_A_1-62_153-289_367-381214 Aminomethyltransferase; NP417381, tetrahydrofolate 98.22
3geh_A_1-114114 MNME, tRNA modification GTPase MNME; G protein, U3 95.9
1xzp_A_1-134134 Probable tRNA modification GTPase TRME; GTP-bindin 95.42
3gee_A_1-122122 MNME, tRNA modification GTPase MNME; G protein, cy 94.77
1v5v_A_1-54_150-279184 Aminomethyltransferase; glycine-cleavage sytem, st 91.25
>1wsr_A (A:55-148) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
Probab=99.86  E-value=1.8e-21  Score=144.03  Aligned_cols=93  Identities=10%  Similarity=0.065  Sum_probs=88.5

Q ss_pred             CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC
Q ss_conf             94079998758787863213267310899826899999799988998999970455520000333334567776432100
Q gi|254780591|r    8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR   87 (273)
Q Consensus         8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (273)
                      |+++++|+||||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++.++........++......
T Consensus         1 H~g~i~v~G~da~~~L~~l~t~dv~~l~~g~~~yt~~l~~~G~i~~d~~v~r~~e~~~~l~~~~~~~~~~~~~l~~~~~~   80 (94)
T 1wsr_A            1 HMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRE   80 (94)
T ss_dssp             TSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf             84899998689999998871457355332443212224788876760322012430235552012112223333333322


Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             0122356884369
Q gi|254780591|r   88 SNVIIEIQPINGV  100 (273)
Q Consensus        88 ~~~~~~~~~~~~~  100 (273)
                      .++.+.+.++++.
T Consensus        81 ~~V~i~d~t~~~~   93 (94)
T 1wsr_A           81 LQNQGRDVGLEVL   93 (94)
T ss_dssp             HHHTTCCCEEEEC
T ss_pred             HCCCCCEEEEEEC
T ss_conf             1034623789865
>1wos_A (A:50-139) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} Back     alignment and structure
>3gir_A (A:83-171) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1vlo_A (A:63-152) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} Back     alignment and structure
>2gag_A (A:632-724) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Back     alignment and structure
>1yx2_A (A:55-142) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1pj5_A (A:508-600) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} Back     alignment and structure
>1vly_A (A:38-125) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} Back     alignment and structure
>1v5v_A (A:55-149) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} Back     alignment and structure
>1x31_C (C:1-36,C:118-206) Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* Back     alignment and structure
>2gag_C (C:1-38,C:120-210) Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1pj5_A (A:425-507,A:601-686) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} Back     alignment and structure
>1wos_A (A:30-49,A:140-220) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} Back     alignment and structure
>1yx2_A (A:1-54,A:143-255) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>2gag_A (A:559-631,A:725-846) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Back     alignment and structure
>1vly_A (A:199-338) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} Back     alignment and structure
>1pj5_A (A:687-830) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} Back     alignment and structure
>1wos_A (A:221-364) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} Back     alignment and structure
>2gag_A (A:847-965) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Back     alignment and structure
>1yx2_A (A:284-365) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1v5v_A (A:312-401) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} Back     alignment and structure
>1wsr_A (A:288-375) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>3gir_A (A:307-393) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1vlo_A (A:290-366) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} Back     alignment and structure
>1vlo_A (A:1-62,A:153-289,A:367-381) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} Back     alignment and structure
>3geh_A (A:1-114) MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>1xzp_A (A:1-134) Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} Back     alignment and structure
>3gee_A (A:1-122) MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1v5v_A (A:1-54,A:150-279) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} Back     alignment and structure