254780591
aminomethyltransferase protein (glycine cleavage)
GeneID in NCBI database: | 8209588 | Locus tag: | CLIBASIA_02390 |
Protein GI in NCBI database: | 254780591 | Protein Accession: | YP_003065004.1 |
Gene range: | -(692688, 693509) | Protein Length: | 273aa |
Gene description: | aminomethyltransferase protein (glycine cleavage) | ||
COG prediction: | [R] Predicted aminomethyltransferase related to GcvT | ||
KEGG prediction: | aminomethyltransferase protein (glycine cleavage); K06980 | ||
SEED prediction: | Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | |||
315121784 | 271 | aminomethyltransferase protein (glycine cleavage) [Cand | 1 | 1e-110 | |
222085402 | 279 | aminomethyltransferase protein (glycine cleavage) [Agro | 1 | 3e-53 | |
86357042 | 281 | putative aminomethyltransferase protein (glycine cleava | 1 | 2e-52 | |
325292432 | 282 | glycine cleavage system T protein, aminomethyltransfera | 1 | 2e-51 | |
190891087 | 290 | aminomethyltransferase (glycine cleavage) protein [Rhiz | 1 | 2e-51 | |
241203903 | 284 | folate-binding protein YgfZ [Rhizobium leguminosarum bv | 1 | 1e-49 | |
15888395 | 282 | glycine cleavage system T protein, aminomethyltransfera | 1 | 2e-49 | |
209548616 | 284 | folate-binding protein YgfZ [Rhizobium leguminosarum bv | 1 | 3e-49 | |
163760578 | 272 | glycine cleavage system T protein, aminomethyltransfera | 1 | 2e-48 | |
116251291 | 287 | aminomethyltransferase [Rhizobium leguminosarum bv. vic | 1 | 2e-47 |
>gi|315121784|ref|YP_004062273.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 271 | Back alignment and organism information |
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Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/271 (69%), Positives = 229/271 (84%) Query: 1 MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60 M SVYLS+QSFIKV GKSA FLQ IITAD+ +LP+ +ARGSA+LTPQGKIL YFLISKI Sbjct: 1 MPSVYLSSQSFIKVRGKSASTFLQGIITADITSLPFDVARGSALLTPQGKILFYFLISKI 60 Query: 61 EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120 EED F+LEI++ +RDS I+KLLFYKLRS+V +E+QPING+ LSWNQE ++ SFIDERF Sbjct: 61 EEDVFVLEINKLQRDSFIEKLLFYKLRSDVALEVQPINGITLSWNQEQAPTSPSFIDERF 120 Query: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180 SIA +LLHRTWG+NE+ SD K YHELRIN+GIV+P DF PSTIFPHDALMDL+ GIS Sbjct: 121 SIAGILLHRTWGYNEESTSDPKEYHELRINYGIVEPIPDFPPSTIFPHDALMDLVKGISF 180 Query: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240 TKGCY+GQEVVSR+QHRNI+RKRP+IITG + LP +GS + D+ +IGTLG++VG+KALA Sbjct: 181 TKGCYVGQEVVSRMQHRNIVRKRPIIITGYNALPANGSSLFVDNTKIGTLGIIVGEKALA 240 Query: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHW 271 IARIDKV +AI+K MALT G++V + P W Sbjct: 241 IARIDKVSNAIEKNMALTADGIKVTITLPPW 271 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222085402|ref|YP_002543932.1| aminomethyltransferase protein (glycine cleavage) [Agrobacterium radiobacter K84] Length = 279 | Back alignment and organism information |
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>gi|86357042|ref|YP_468934.1| putative aminomethyltransferase protein (glycine cleavage) [Rhizobium etli CFN 42] Length = 281 | Back alignment and organism information |
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>gi|325292432|ref|YP_004278296.1| glycine cleavage system T protein, aminomethyltransferase [Agrobacterium sp. H13-3] Length = 282 | Back alignment and organism information |
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>gi|190891087|ref|YP_001977629.1| aminomethyltransferase (glycine cleavage) protein [Rhizobium etli CIAT 652] Length = 290 | Back alignment and organism information |
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>gi|241203903|ref|YP_002974999.1| folate-binding protein YgfZ [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 284 | Back alignment and organism information |
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>gi|15888395|ref|NP_354076.1| glycine cleavage system T protein, aminomethyltransferase [Agrobacterium tumefaciens str. C58] Length = 282 | Back alignment and organism information |
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>gi|209548616|ref|YP_002280533.1| folate-binding protein YgfZ [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 284 | Back alignment and organism information |
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>gi|163760578|ref|ZP_02167659.1| glycine cleavage system T protein, aminomethyltransferase [Hoeflea phototrophica DFL-43] Length = 272 | Back alignment and organism information |
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>gi|116251291|ref|YP_767129.1| aminomethyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 287 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
KOG2929 | 348 | KOG2929, KOG2929, KOG2929, Transcription factor, compon | 3e-32 | |
COG0404 | 379 | COG0404, GcvT, Glycine cleavage system T protein (amino | 3e-07 | |
KOG2770 | 401 | KOG2770, KOG2770, KOG2770, Aminomethyl transferase [Ami | 0.001 | |
COG0354 | 305 | COG0354, COG0354, Predicted aminomethyltransferase rela | 5e-44 | |
TIGR03317 | 67 | TIGR03317, ygfZ_signature, folate-binding protein YgfZ | 8e-16 | |
pfam01571 | 212 | pfam01571, GCV_T, Aminomethyltransferase folate-binding | 2e-09 | |
pfam08669 | 95 | pfam08669, GCV_T_C, Glycine cleavage T-protein C-termin | 1e-07 | |
PRK09559 | 327 | PRK09559, PRK09559, putative global regulator; Reviewed | 6e-05 |
>gnl|CDD|38140 KOG2929, KOG2929, KOG2929, Transcription factor, component of CCR4 transcriptional complex [Transcription] | Back alignment and domain information |
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>gnl|CDD|30753 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|37981 KOG2770, KOG2770, KOG2770, Aminomethyl transferase [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30703 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|163214 TIGR03317, ygfZ_signature, folate-binding protein YgfZ | Back alignment and domain information |
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>gnl|CDD|144970 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain | Back alignment and domain information |
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>gnl|CDD|149654 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain | Back alignment and domain information |
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>gnl|CDD|181953 PRK09559, PRK09559, putative global regulator; Reviewed | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
PRK00389 | 362 | gcvT glycine cleavage system aminomethyltransferase T; | 100.0 | |
COG0404 | 379 | GcvT Glycine cleavage system T protein (aminomethyltran | 100.0 | |
PRK12486 | 367 | dmdA putative dimethyl sulfoniopropionate demethylase; | 100.0 | |
PRK13579 | 371 | gcvT glycine cleavage system aminomethyltransferase T; | 100.0 | |
TIGR00528 | 394 | gcvT glycine cleavage system T protein; InterPro: IPR00 | 100.0 | |
COG0354 | 305 | Predicted aminomethyltransferase related to GcvT [Gener | 100.0 | |
PRK09559 | 327 | putative global regulator; Reviewed | 100.0 | |
TIGR01372 | 1026 | soxA sarcosine oxidase, alpha subunit family; InterPro: | 100.0 | |
KOG2929 | 348 | consensus | 100.0 | |
KOG2770 | 401 | consensus | 99.97 | |
KOG2844 | 856 | consensus | 99.97 | |
pfam01571 | 212 | GCV_T Aminomethyltransferase folate-binding domain. Thi | 99.89 | |
pfam08669 | 95 | GCV_T_C Glycine cleavage T-protein C-terminal barrel do | 99.28 | |
TIGR03317 | 67 | ygfZ_signature folate-binding protein YgfZ. YgfZ is a p | 98.22 | |
pfam04268 | 148 | SoxG Sarcosine oxidase, gamma subunit family. Sarcosine | 96.97 | |
COG0486 | 454 | ThdF Predicted GTPase [General function prediction only | 96.92 | |
pfam10396 | 114 | TrmE_N GTP-binding protein TrmE N-terminus. This family | 96.67 | |
COG4583 | 189 | Sarcosine oxidase gamma subunit [Amino acid transport a | 96.67 | |
PRK05291 | 445 | trmE tRNA modification GTPase TrmE; Reviewed | 96.39 | |
TIGR01375 | 154 | soxG sarcosine oxidase, gamma subunit family; InterPro: | 96.34 | |
TIGR00450 | 473 | thdF tRNA modification GTPase TrmE; InterPro: IPR004520 | 90.68 |
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed | Back alignment and domain information |
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>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed | Back alignment and domain information |
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>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional | Back alignment and domain information |
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>TIGR00528 gcvT glycine cleavage system T protein; InterPro: IPR006223 This is a subfamily of glycine cleavage T proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
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>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] | Back alignment and domain information |
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>PRK09559 putative global regulator; Reviewed | Back alignment and domain information |
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>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases | Back alignment and domain information |
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>KOG2929 consensus | Back alignment and domain information |
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>KOG2770 consensus | Back alignment and domain information |
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>KOG2844 consensus | Back alignment and domain information |
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>pfam01571 GCV_T Aminomethyltransferase folate-binding domain | Back alignment and domain information |
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>pfam08669 GCV_T_C Glycine cleavage T-protein C-terminal barrel domain | Back alignment and domain information |
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>TIGR03317 ygfZ_signature folate-binding protein YgfZ | Back alignment and domain information |
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>pfam04268 SoxG Sarcosine oxidase, gamma subunit family | Back alignment and domain information |
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>COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
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>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus | Back alignment and domain information |
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>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
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>TIGR01375 soxG sarcosine oxidase, gamma subunit family; InterPro: IPR006280 These sequences represent the gamma subunit of a family of known and putative heterotetrameric sarcosine oxidases | Back alignment and domain information |
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>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
1yx2_A | 365 | Crystal Structure Of The Probable Aminomethyltransf | 8e-28 | |
1woo_A | 364 | Crystal Structure Of T-Protein Of The Glycine Cleav | 3e-27 | |
1v5v_A | 401 | Crystal Structure Of A Component Of Glycine Cleavag | 3e-19 | |
3gir_A | 393 | Crystal Structure Of Glycine Cleavage System Aminom | 1e-18 | |
3a8i_A | 364 | Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len | 5e-18 | |
3a8k_A | 364 | Crystal Structure Of Etd97n-Ehred Complex Length = | 3e-17 | |
1vlo_A | 381 | Crystal Structure Of Aminomethyltransferase (T Prot | 5e-16 | |
1pj5_A | 830 | Crystal Structure Of Dimethylglycine Oxidase Of Art | 1e-13 | |
1wsr_A | 375 | Crystal Structure Of Human T-Protein Of Glycine Cle | 1e-13 | |
3gsi_A | 827 | Crystal Structure Of D552a Dimethylglycine Oxidase | 1e-12 | |
2gag_A | 965 | Heteroteterameric Sarcosine: Structure Of A Diflavi | 2e-10 | |
2gah_A | 965 | Heterotetrameric Sarcosine: Structure Of A Diflavin | 5e-09 | |
1vrq_A | 964 | Crystal Structure Of Heterotetrameric Sarcosine Oxi | 4e-10 | |
1nrk_A | 328 | Ygfz Protein Length = 328 | 6e-09 | |
1vly_A | 338 | Crystal Structure Of A Putative Aminomethyltransfer | 6e-09 |
>gi|62738815|pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 | Back alignment and structure |
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 82/313 (26%), Gaps = 47/313 (15%) Query: 7 SNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFI 66 S+ ++V G ++ FLQ + T DV L A+ +A P G + LI + E+ ++ Sbjct: 53 SHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENRYL 112 Query: 67 LEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNS------------S 114 L I+ S D + + I Q +L+ + Sbjct: 113 LVINASNIDKDLAWXKEHAAGDVQID-NQSDQIALLAVQGPKAEAILKNLTDADVSALKP 171 Query: 115 FIDERFSIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHD----- 169 F + + Y I D + Sbjct: 172 FAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGLGAR 231 Query: 170 -----------------------ALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMI 206 + + G+ V+S + RK + Sbjct: 232 DTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAKRKLVGL 291 Query: 207 ITGTDDLPPSGSPILTDDIEIGTLGVVVG------KKALAIARIDKVDHAIKKGMALTVH 260 +P G + + +G + LA+ + + + + Sbjct: 292 EXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKK 351 Query: 261 GVRVKASFPHWYK 273 V+ K +YK Sbjct: 352 LVKAKVVKTPFYK 364 |
gi|55670726|pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 | Back alignment and structure |
gi|56554253|pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 | Back alignment and structure |
>gi|225698148|pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393 | Back alignment and structure |
gi|293651790|pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 364 | Back alignment and structure |
>gi|293651802|pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex Length = 364 | Back alignment and structure |
>gi|55670453|pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein; Tetrahydrofolate-Dependent) Of Glycine Cleavage System (Np417381) From Escherichia Coli K12 At 1.70 A Resolution Length = 381 | Back alignment and structure |
>gi|37927479|pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 | Back alignment and structure |
>gi|75765383|pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 | Back alignment and structure |
>gi|226887919|pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 | Back alignment and structure |
>gi|114794036|pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 | Back alignment and structure |
>gi|114794040|pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 | Back alignment and structure |
>gi|71041783|pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 | Back alignment and structure |
>gi|47168424|pdb|1NRK|A Chain A, Ygfz Protein Length = 328 | Back alignment and structure |
>gi|52696236|pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase (Ygfz) From Escherichia Coli At 1.30 A Resolution Length = 338 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
1vly_A | 338 | SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898 | 1e-16 | |
1yx2_A | 365 | Aminomethyltransferase; glycine cleavage system T prote | 4e-05 | |
1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD binding, | 5e-09 | |
2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; flavo | 2e-06 | |
1v5v_A | 401 | Aminomethyltransferase; glycine-cleavage sytem, structu | 2e-04 |
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 | Back alignment and structure |
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Score = 82.0 bits (201), Expect = 1e-16 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 35/294 (11%) Query: 6 LSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTF 65 L + + + G + ++Q +TADV + +A +GK+ + + + Sbjct: 36 LDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFA 95 Query: 66 ILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSI--- 122 +E + L + + I + ++ Q + F + Sbjct: 96 WIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQV 155 Query: 123 ------------------------ADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNT 158 A + E ++ + + L I G + Sbjct: 156 VKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVID- 214 Query: 159 DFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDD-LPPSG 217 P + L GIS KGCY GQE+V+R + R ++ ++ G+ LP +G Sbjct: 215 AANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAG 274 Query: 218 SPILT----DDIEIGTL--GVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVK 265 + + GT+ V + + + + D + + Sbjct: 275 EDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLH 328 |
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 | Back alignment and structure |
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>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 | Back alignment and structure |
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>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Length = 965 | Back alignment and structure |
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>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
1yx2_A | 365 | Aminomethyltransferase; glycine cleavage system T prote | 100.0 | |
1v5v_A | 401 | Aminomethyltransferase; glycine-cleavage sytem, structu | 100.0 | |
1vly_A | 338 | SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898 | 100.0 | |
1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD binding, | 100.0 | |
3gir_A | 393 | Aminomethyltransferase; glycine cleavage system, aminot | 100.0 | |
2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; flavo | 100.0 | |
1wos_A | 364 | Aminomethyltransferase; T-protein; 1.84A {Thermotoga ma | 100.0 | |
1wsr_A | 375 | Aminomethyltransferase; glycine-cleavage sytem; 2.00A { | 100.0 | |
1vlo_A | 381 | Aminomethyltransferase; NP417381, tetrahydrofolate-depe | 100.0 | |
1x31_C | 206 | Sarcosine oxidase gamma subunit; heterotetrameric sarco | 98.66 | |
2gag_C | 210 | Heterotetrameric sarcosine oxidase gamma-subunit; flavo | 98.34 | |
1x31_C | 206 | Sarcosine oxidase gamma subunit; heterotetrameric sarco | 96.66 | |
2gag_C | 210 | Heterotetrameric sarcosine oxidase gamma-subunit; flavo | 96.31 | |
3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cytopla | 95.57 | |
3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U34, cy | 95.27 | |
1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-binding, TH | 94.16 |
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} | Back alignment and structure |
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Probab=100.00 E-value=2.2e-42 Score=265.25 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=193.9 Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643 Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273) Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273) +=+|+++.|+|+|+||.+|||+++||||++|++|++.||+|||++|+|++|++|+|++++.|+++.+.........++.. T Consensus 50 ~D~S~~~~i~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~l~~~G~ii~D~~v~~~~e~~~~l~~~~~~~~~~~~~l~~ 129 (365) T 1yx2_A 50 FDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKE 129 (365) T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHH T ss_pred EECCCCEEEEEECCCHHHHHHHHHHHCCEECCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHH T ss_conf 97897189999879999999876141442137984898887658897765379998047860676145667767788763 Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-------------------------CCCCHHHHHH------- Q ss_conf 21000122356884369999718543222111234566-------------------------4441012221------- Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS-------------------------IADVLLHRTW------- 131 (273) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~------- 131 (273) .... .+.+.+.++.+..++++||+++........... ..++..+.++ T Consensus 130 ~~~~-~~~~~~~~~~~~~~~l~GP~s~~~l~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~R~g~tGe~G~el~~~~~~~~ 208 (365) T 1yx2_A 130 HAAG-DVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAM 208 (365) T ss_dssp TCCS-SCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHH T ss_pred CCCC-CCEEEECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECCCHHHHH T ss_conf 3378-609998768788898787660332012467410123541202578988918999946767887347416789999 Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCCCC Q ss_conf ----------013555579678888887520133456543221233100111220133147-521331013210012444 Q gi|254780591|r 132 ----------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK-GCYIGQEVVSRIQHRNII 200 (273) Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~f~G~e~~~~~~~~~~~ 200 (273) ........+...++..+.+.+.+.+..+... ...+....+.+.++..| +||+|||++.+++..+.. T Consensus 209 ~l~~~l~~aG~~~g~~p~G~~a~~~lRiE~g~~~~g~D~~~---~~~P~EagL~~~i~~~k~~~fiG~eal~~~~~~g~~ 285 (365) T 1yx2_A 209 HIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTR---DITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAK 285 (365) T ss_dssp HHHHHHHHHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBST---TCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHHCCS T ss_pred HHHHHHHHCCHHHCCEECCHHHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC T ss_conf 99999996127519988668787577886488766865778---899678788735765786552208999999864997 Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCC Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688--89999748876 Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWY 272 (273) Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~ 272 (273) ++++++....+..+..|++|+.+|+.||.|||+++| +||||++.++...+.. +++.+.+ ++++|+++||| T Consensus 286 rrlvgl~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~lg~~Iala~v~~~~a~~g~~--l~v~~~g~~~~a~V~~~Pfy 363 (365) T 1yx2_A 286 RKLVGLEMIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTV--VDVEIRKKLVKAKVVKTPFY 363 (365) T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCE--EEEEETTEEEEEEEECCCC- T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECHHCCEEEEEEEECHHHCCCCCE--EEEEECCEEEEEEEECCCCC T ss_conf 5999999568878899997988990899941588973059289999998021589988--99999999999999888886 Q ss_pred C Q ss_conf 9 Q gi|254780591|r 273 K 273 (273) Q Consensus 273 ~ 273 (273) | T Consensus 364 ~ 364 (365) T 1yx2_A 364 K 364 (365) T ss_dssp - T ss_pred C T ss_conf 7 |
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 | Back alignment and structure |
---|
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A | Back alignment and structure |
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>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
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>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} | Back alignment and structure |
---|
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
---|
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A | Back alignment and structure |
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>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* | Back alignment and structure |
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>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* | Back alignment and structure |
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>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* | Back alignment and structure |
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>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* | Back alignment and structure |
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>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* | Back alignment and structure |
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>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* | Back alignment and structure |
---|
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
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>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
273 | aminomethyltransferase protein (glycine cleavage) [Cand | |||
d1vlya2 | 241 | d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-termin | 3e-21 | |
d1pj5a4 | 315 | d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domai | 7e-04 |
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Folate-binding domain superfamily: Folate-binding domain family: Aminomethyltransferase folate-binding domain domain: Hypothetical protein YgfZ, N-terminal domain species: Escherichia coli [TaxId: 562] Score = 95.8 bits (237), Expect = 3e-21 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 28/224 (12%) Query: 1 MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60 ++ + L + + + G + ++Q +TADV + +A +GK+ + + Sbjct: 17 LTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD 76 Query: 61 EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQ---------PINGVVLSWNQEHTFS 111 + +E + L + + I L+ S Sbjct: 77 GDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPS 136 Query: 112 NSSFIDERFSIADVLLHRTWGHNEKIAS------------------DIKTYHELRINHGI 153 + + + + + + + + L I G Sbjct: 137 KEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGF 196 Query: 154 VDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHR 197 + P + L GIS KGCY GQE+V+R + R Sbjct: 197 PVIDAA-NSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFR 239 |
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
d1vlya2 | 241 | Hypothetical protein YgfZ, N-terminal domain {Escherich | 99.97 | |
d1pj5a4 | 315 | N,N-dimethylglycine oxidase domain 3 {Arthrobacter glob | 99.95 | |
d1wosa2 | 278 | Glycine cleavage system T protein, GcvT {Thermotoga mar | 99.94 | |
d1v5va2 | 310 | Glycine cleavage system T protein, GcvT {Pyrococcus hor | 99.94 | |
d1vloa2 | 274 | Glycine cleavage system T protein, GcvT {Escherichia co | 99.94 | |
d1v5va1 | 89 | Glycine cleavage system T protein, GcvT {Pyrococcus hor | 99.07 | |
d1wosa1 | 83 | Glycine cleavage system T protein, GcvT {Thermotoga mar | 99.04 | |
d1vloa1 | 90 | Glycine cleavage system T protein, GcvT {Escherichia co | 98.79 | |
d1pj5a1 | 88 | N,N-dimethylglycine oxidase, C-terminal domain {Arthrob | 98.73 | |
d1xzpa3 | 117 | TrmE formyl-THF-binding domain {Thermotoga maritima [Ta | 94.73 |
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Folate-binding domain superfamily: Folate-binding domain family: Aminomethyltransferase folate-binding domain domain: Hypothetical protein YgfZ, N-terminal domain species: Escherichia coli [TaxId: 562] Probab=99.97 E-value=2.8e-31 Score=199.01 Aligned_cols=195 Identities=19% Similarity=0.229 Sum_probs=133.4 Q ss_pred CEEECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHH Q ss_conf 41761794079998758787863213267310899826899999799988998999970455520000333334567776 Q gi|254780591|r 2 SSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKL 81 (273) Q Consensus 2 ~~~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~ 81 (273) ..+-|++|++|+|+|+||.+|||+|+||||++|++|+++||+|||++|||++|++|+|.+++.++++..+... ....++ T Consensus 18 ~l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~~t~~ln~kGri~~d~~i~~~~~~~~l~~~~~~~~-~~~~~l 96 (241) T d1vlya2 18 TLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVRE-PQLTEL 96 (241) T ss_dssp EEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHH-HHHHHH T ss_pred EEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEHHHHHHH-HHHHHH T ss_conf 6997798569999888999997377642610169997873310156675999877752233202111134568-888877 Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH-----------------HH------------HHC Q ss_conf 4321000122356884369999718543222111234566444101-----------------22------------210 Q gi|254780591|r 82 LFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLL-----------------HR------------TWG 132 (273) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~~------------~~~ 132 (273) .......++.+.+ ++.+..+.++||.++................. .. ... T Consensus 97 ~~~~~~~~v~i~~-~~~~~~~~l~gp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (241) T d1vlya2 97 KKYAVFSKVTIAP-DDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKL 175 (241) T ss_dssp HTTCSSSSCEEEE-ECSSEEEEEESTTHHHHHHTTSSCCCBTTBCEEEETTEEEEEECSSSCEEEEEECHHHHHHHHHHH T ss_pred HHHCCCCEEEEEC-CHHHEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCHHHHHHHHHHH T ss_conf 6530252146511-300103431273079999861544344344212110146530367876345307788999999876 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 1355557967888888752013345654322123310011122013314752133101321001244 Q gi|254780591|r 133 HNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNI 199 (273) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~ 199 (273) .......+...|+..+.+.+.+....... ....+.........+++++||||+|||.++|++++|. T Consensus 176 ~~~~~~~~~~~~~~lRie~g~p~~~~e~~-~~~~P~E~gLd~~~~Vsf~KGCY~GQE~vAR~~~rG~ 241 (241) T d1vlya2 176 RGEAELNNSQQWLALNIEAGFPVIDAANS-GQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGA 241 (241) T ss_dssp BTTBEEECHHHHHHHHHHHTCCCCCGGGT-TSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTS T ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHCCC T ss_conf 42112466668999999809862385577-8774888296002699989999675999999985299 |
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
---|
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
---|
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
---|
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
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>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 273 | aminomethyltransferase protein (glycine cleavage) | ||
1vly_A_199-338 | 140 | (A:199-338) SPOT PR51, unknown protein from 2D-PAG | 6e-12 | |
1pj5_A_687-830 | 144 | (A:687-830) N,N-dimethylglycine oxidase; channelli | 8e-10 | |
1wos_A_221-364 | 144 | (A:221-364) Aminomethyltransferase; T-protein; 1.8 | 8e-08 | |
1wos_A_50-139 | 90 | (A:50-139) Aminomethyltransferase; T-protein; 1.84 | 7e-12 | |
1wsr_A_55-148 | 94 | (A:55-148) Aminomethyltransferase; glycine-cleavag | 7e-12 | |
3gir_A_83-171 | 89 | (A:83-171) Aminomethyltransferase; glycine cleavag | 1e-11 | |
1v5v_A_55-149 | 95 | (A:55-149) Aminomethyltransferase; glycine-cleavag | 1e-11 | |
1vlo_A_63-152 | 90 | (A:63-152) Aminomethyltransferase; NP417381, tetra | 2e-10 | |
1pj5_A_508-600 | 93 | (A:508-600) N,N-dimethylglycine oxidase; channelli | 8e-10 | |
1yx2_A_55-142 | 88 | (A:55-142) Aminomethyltransferase; glycine cleavag | 2e-09 | |
2gag_A_632-724 | 93 | (A:632-724) Heterotetrameric sarcosine oxidase alp | 2e-09 | |
1vly_A_38-125 | 88 | (A:38-125) SPOT PR51, unknown protein from 2D-PAGE | 7e-08 | |
1vlo_A_1-62_153-289_367-381 | 214 | (A:1-62,A:153-289,A:367-381) Aminomethyltransferas | 1e-07 | |
2gag_A_847-965 | 119 | (A:847-965) Heterotetrameric sarcosine oxidase alp | 2e-04 |
>1vly_A (A:199-338) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}Length = 140 | Back alignment and structure |
---|
Score = 65.8 bits (160), Expect = 6e-12 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 10/132 (7%) Query: 142 KTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIR 201 + + L I G + I P + L GIS KGCY GQE V+R + R + Sbjct: 1 QQWLALNIEAGFPVIDAANSGQFI-PQATNLQALGGISFKKGCYTGQEXVARAKFRGANK 59 Query: 202 KRPMIITGTDD-LPPSGSPILTDDIEIG------TLGVVVGKKALAIARIDKVDHAIKKG 254 + ++ G+ LP +G + E V + + + + D Sbjct: 60 RALWLLAGSASRLPEAGEDLELKXGENWRRTGTVLAAVKLEDGQVVVQVVXNNDXEP--D 117 Query: 255 MALTVHGVRVKA 266 V Sbjct: 118 SIFRVRDDANTL 129 |
>1pj5_A (A:687-830) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis}Length = 144 | Back alignment and structure |
---|
>1wos_A (A:221-364) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}Length = 144 | Back alignment and structure |
---|
>1wos_A (A:50-139) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}Length = 90 | Back alignment and structure |
---|
>1wsr_A (A:55-148) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*Length = 94 | Back alignment and structure |
---|
>3gir_A (A:83-171) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}Length = 89 | Back alignment and structure |
---|
>1v5v_A (A:55-149) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii}Length = 95 | Back alignment and structure |
---|
>1vlo_A (A:63-152) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12}Length = 90 | Back alignment and structure |
---|
>1pj5_A (A:508-600) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis}Length = 93 | Back alignment and structure |
---|
>1yx2_A (A:55-142) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}Length = 88 | Back alignment and structure |
---|
>2gag_A (A:632-724) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A*Length = 93 | Back alignment and structure |
---|
>1vly_A (A:38-125) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}Length = 88 | Back alignment and structure |
---|
>1vlo_A (A:1-62,A:153-289,A:367-381) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12}Length = 214 | Back alignment and structure |
---|
>2gag_A (A:847-965) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A*Length = 119 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 273 | aminomethyltransferase protein (glycine cleavage) [Cand | ||
1wsr_A_55-148 | 94 | Aminomethyltransferase; glycine-cleavage sytem; 2. | 99.86 | |
1wos_A_50-139 | 90 | Aminomethyltransferase; T-protein; 1.84A {Thermoto | 99.84 | |
3gir_A_83-171 | 89 | Aminomethyltransferase; glycine cleavage system, a | 99.84 | |
1vlo_A_63-152 | 90 | Aminomethyltransferase; NP417381, tetrahydrofolate | 99.82 | |
2gag_A_632-724 | 93 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.81 | |
1yx2_A_55-142 | 88 | Aminomethyltransferase; glycine cleavage system T | 99.81 | |
1pj5_A_508-600 | 93 | N,N-dimethylglycine oxidase; channelling, FAD bind | 99.8 | |
1vly_A_38-125 | 88 | SPOT PR51, unknown protein from 2D-PAGE; 1789265, | 99.79 | |
1v5v_A_55-149 | 95 | Aminomethyltransferase; glycine-cleavage sytem, st | 99.78 | |
1x31_C_1-36_118-206 | 125 | Sarcosine oxidase gamma subunit; heterotetrameric | 96.14 | |
2gag_C_1-38_120-210 | 129 | Heterotetrameric sarcosine oxidase gamma-subunit; | 95.94 | |
1pj5_A_425-507_601-686 | 169 | N,N-dimethylglycine oxidase; channelling, FAD bind | 94.85 | |
1wos_A_30-49_140-220 | 101 | Aminomethyltransferase; T-protein; 1.84A {Thermoto | 94.27 | |
1yx2_A_1-54_143-255 | 167 | Aminomethyltransferase; glycine cleavage system T | 91.5 | |
2gag_A_559-631_725-846 | 195 | Heterotetrameric sarcosine oxidase alpha-subunit; | 90.68 | |
1vly_A_199-338 | 140 | SPOT PR51, unknown protein from 2D-PAGE; 1789265, | 99.62 | |
1pj5_A_687-830 | 144 | N,N-dimethylglycine oxidase; channelling, FAD bind | 99.61 | |
1wos_A_221-364 | 144 | Aminomethyltransferase; T-protein; 1.84A {Thermoto | 99.6 | |
2gag_A_847-965 | 119 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.4 | |
1yx2_A_284-365 | 82 | Aminomethyltransferase; glycine cleavage system T | 99.05 | |
1v5v_A_312-401 | 90 | Aminomethyltransferase; glycine-cleavage sytem, st | 99.02 | |
1wsr_A_288-375 | 88 | Aminomethyltransferase; glycine-cleavage sytem; 2. | 99.0 | |
3gir_A_307-393 | 87 | Aminomethyltransferase; glycine cleavage system, a | 98.78 | |
1vlo_A_290-366 | 77 | Aminomethyltransferase; NP417381, tetrahydrofolate | 98.27 | |
1vlo_A_1-62_153-289_367-381 | 214 | Aminomethyltransferase; NP417381, tetrahydrofolate | 98.22 | |
3geh_A_1-114 | 114 | MNME, tRNA modification GTPase MNME; G protein, U3 | 95.9 | |
1xzp_A_1-134 | 134 | Probable tRNA modification GTPase TRME; GTP-bindin | 95.42 | |
3gee_A_1-122 | 122 | MNME, tRNA modification GTPase MNME; G protein, cy | 94.77 | |
1v5v_A_1-54_150-279 | 184 | Aminomethyltransferase; glycine-cleavage sytem, st | 91.25 |
>1wsr_A (A:55-148) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* | Back alignment and structure |
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Probab=99.86 E-value=1.8e-21 Score=144.03 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=88.5 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC Q ss_conf 94079998758787863213267310899826899999799988998999970455520000333334567776432100 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR 87 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273) |+++++|+||||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++.++........++...... T Consensus 1 H~g~i~v~G~da~~~L~~l~t~dv~~l~~g~~~yt~~l~~~G~i~~d~~v~r~~e~~~~l~~~~~~~~~~~~~l~~~~~~ 80 (94) T 1wsr_A 1 HMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRE 80 (94) T ss_dssp TSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH T ss_conf 84899998689999998871457355332443212224788876760322012430235552012112223333333322 Q ss_pred CCCCCCCCCCCEE Q ss_conf 0122356884369 Q gi|254780591|r 88 SNVIIEIQPINGV 100 (273) Q Consensus 88 ~~~~~~~~~~~~~ 100 (273) .++.+.+.++++. T Consensus 81 ~~V~i~d~t~~~~ 93 (94) T 1wsr_A 81 LQNQGRDVGLEVL 93 (94) T ss_dssp HHHTTCCCEEEEC T ss_pred HCCCCCEEEEEEC T ss_conf 1034623789865 |
>1wos_A (A:50-139) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} | Back alignment and structure |
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>3gir_A (A:83-171) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} | Back alignment and structure |
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>1vlo_A (A:63-152) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} | Back alignment and structure |
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>2gag_A (A:632-724) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* | Back alignment and structure |
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>1yx2_A (A:55-142) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} | Back alignment and structure |
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>1pj5_A (A:508-600) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} | Back alignment and structure |
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>1vly_A (A:38-125) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} | Back alignment and structure |
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>1v5v_A (A:55-149) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} | Back alignment and structure |
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>1x31_C (C:1-36,C:118-206) Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* | Back alignment and structure |
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>2gag_C (C:1-38,C:120-210) Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* | Back alignment and structure |
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>1pj5_A (A:425-507,A:601-686) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} | Back alignment and structure |
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>1wos_A (A:30-49,A:140-220) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} | Back alignment and structure |
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>1yx2_A (A:1-54,A:143-255) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} | Back alignment and structure |
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>2gag_A (A:559-631,A:725-846) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* | Back alignment and structure |
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>1vly_A (A:199-338) SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} | Back alignment and structure |
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>1pj5_A (A:687-830) N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} | Back alignment and structure |
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>1wos_A (A:221-364) Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} | Back alignment and structure |
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>2gag_A (A:847-965) Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* | Back alignment and structure |
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>1yx2_A (A:284-365) Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} | Back alignment and structure |
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>1v5v_A (A:312-401) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} | Back alignment and structure |
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>1wsr_A (A:288-375) Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* | Back alignment and structure |
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>3gir_A (A:307-393) Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} | Back alignment and structure |
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>1vlo_A (A:290-366) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} | Back alignment and structure |
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>1vlo_A (A:1-62,A:153-289,A:367-381) Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} | Back alignment and structure |
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>3geh_A (A:1-114) MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
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>1xzp_A (A:1-134) Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} | Back alignment and structure |
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>3gee_A (A:1-122) MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
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>1v5v_A (A:1-54,A:150-279) Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} | Back alignment and structure |
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