254780619
primosome assembly protein PriA
| GeneID in NCBI database: | 8209619 | Locus tag: | CLIBASIA_02530 |
| Protein GI in NCBI database: | 254780619 | Protein Accession: | YP_003065032.1 |
| Gene range: | +(653006, 655201) | Protein Length: | 731aa |
| Gene description: | primosome assembly protein PriA | ||
| COG prediction: | none | ||
| KEGG prediction: | priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.1.-] | ||
| SEED prediction: | Helicase PriA essential for oriC/DnaA-independent DNA replication | ||
| Pathway involved in KEGG: | Homologous recombination [PATH:las03440] | ||
| Subsystem involved in SEED: | DNA-replication;
Conserved gene cluster associated with Met-tRNA formyltransferase | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 731 | primosome assembly protein PriA [Candidatus Liberibacte | |||
| 254780947 | 1187 | transcription-repair coupling factor [Candidatus L | 1e-07 | ||
| 254780945 | 700 | ATP-dependent DNA helicase RecG [Candidatus Liberi | 8e-06 | ||
| 254780991 | 805 | excinuclease ABC subunit B [Candidatus Liberibacte | 0.003 | ||
| 254780991 | 805 | excinuclease ABC subunit B [Candidatus Liberibacte | 0.022 |
| >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 | Back alignment |
|---|
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 20/234 (8%)
Query: 115 SETEKMEEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDL---IRASQVSSHVIDGLK 171
++ K+ ++ + R +T LDK+ G W+ R R ++ ++D
Sbjct: 540 ADNAKLFVPVENIDLISRYSTEITTVTLDKL-GGSAWKTRKANLKKRLEDLAQKLVDI-- 596
Query: 172 AQGVIKQIFEVISPVVDSPNLYFSL-----PILDKNQQDVVEQVVPLCTKGFAVS-LISG 225
K+ + P++ S +LY + ++Q+ ++ V+ + G + LI G
Sbjct: 597 ---AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICG 653
Query: 226 VTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLS 282
G GKTE+ L + G QV ++ P L F +R F V+ A +
Sbjct: 654 DVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQ 713
Query: 283 TSMREKIWRQVARGAISVIVGVRSALF--LPFKKLGLIVIDEEHDISYKQEEGI 334
T + + G + +++G + L + F LGLI+IDEE K +E +
Sbjct: 714 TKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEAL 767
|
| >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 | Back alignment |
|---|
Score = 43.9 bits (102), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 201 KNQQDVVEQVV-PLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLT 259
K+Q+ ++ ++ + K + ++ G GSGKT V L +AA + G Q +I+ P I +
Sbjct: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGIL 333
Query: 260 SAILERFQKRFGVKPAEWHSSLSTSM----REKIWRQVARGAISVIVGVRSALF---LPF 312
+ F K++ ++ +M R K ++A G +I+G ALF + +
Sbjct: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
Query: 313 KKLGLIVIDEEHDISYKQ 330
KL L+++DE+H +Q
Sbjct: 393 YKLILVIVDEQHRFGVQQ 410
|
| >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 | Back alignment |
|---|
Score = 35.8 bits (81), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 112 SALSETEKMEEKIQFTGIFPRINTVARLRVLDK--IKDGKIWEKRDLIRASQVSSHVIDG 169
S++S +EK +I + P + +ARL D +K+GKIW R+ +++H D
Sbjct: 82 SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPH---RSWSINNHSKDI 138
Query: 170 LKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGS 229
Q+ P D P + Q++ V L+ GVTGS
Sbjct: 139 -----TFFQMQTDYHPSGDQPA--------------AIAQLLKGIHSREKVQLLLGVTGS 179
Query: 230 GKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSS 280
GKT +++ A + + +++ P L + + F+ F E+ S
Sbjct: 180 GKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
|
| >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 | Back alignment |
|---|
Score = 32.7 bits (73), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 481 VCGSSGKMIACGFGIERIAEEVCEYF--PLARISILSSDLEGGGGRLQLQLSAIAKGEID 538
+ G I +R+AE++ EY R+ + S+++ R+++ + + G+ D
Sbjct: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-RIEI-IRDLRLGKFD 634
Query: 539 IIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGR 591
+++G L+ +G + P LV ++D D LRS L Q GRA R
Sbjct: 635 VLVGINLLREGLDIPECGLVAILDAD---KEGFLRSKTS----LIQTIGRAAR 680
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 731 | primosome assembly protein PriA [Candidatus Liberibacte | |||
| 315121820 | 729 | primosome assembly protein PriA [Candidatus Liberibacte | 1 | 0.0 | |
| 190893721 | 738 | primosomal protein N' (replication factor Y) protein [R | 1 | 0.0 | |
| 241206630 | 738 | primosome assembly protein PriA [Rhizobium leguminosaru | 1 | 0.0 | |
| 327188924 | 809 | primosomal protein N' (replication factor Y) protein [R | 1 | 0.0 | |
| 116254144 | 738 | primosome assembly protein PriA [Rhizobium leguminosaru | 1 | 0.0 | |
| 86359456 | 738 | primosome assembly protein PriA [Rhizobium etli CFN 42] | 1 | 0.0 | |
| 209551229 | 738 | primosome assembly protein PriA [Rhizobium leguminosaru | 1 | 0.0 | |
| 222087443 | 743 | primosomal protein N' [Agrobacterium radiobacter K84] L | 1 | 0.0 | |
| 319780911 | 727 | DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserru | 1 | 0.0 | |
| 150398124 | 734 | primosome assembly protein PriA [Sinorhizobium medicae | 1 | 0.0 |
| >gi|315121820|ref|YP_004062309.1| primosome assembly protein PriA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 729 | Back alignment and organism information |
|---|
Score = 1227 bits (3174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/731 (80%), Positives = 659/731 (90%), Gaps = 2/731 (0%)
Query: 1 MASSGSSVEGVVCSRVIILLLQAVSGPYIYSVPSAMKVELGSIVRVPLRSRTVLGIVWYN 60
M SS +S E VCS V++LLLQAVS PY YSVPS M+V LGSIVRVPLRSRTVLG+VWY+
Sbjct: 1 MVSSVTSSEAEVCSSVVVLLLQAVSSPYTYSVPSDMRVGLGSIVRVPLRSRTVLGVVWYD 60
Query: 61 SEEKYKIDSLKLRPIEYVFDCPPLSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKM 120
S Y D+LKLRPIEYVFDCPPLS++MCEF+KWVA+YTFS MGLVARMVVSALSETEKM
Sbjct: 61 S--VYTGDNLKLRPIEYVFDCPPLSQEMCEFIKWVANYTFSSMGLVARMVVSALSETEKM 118
Query: 121 EEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIF 180
EEKIQFTGI PRINT ARLRVL++IKDGKIW KR+L+ ASQVSSHVIDGLK QGV+K+IF
Sbjct: 119 EEKIQFTGILPRINTAARLRVLNEIKDGKIWGKRNLMLASQVSSHVIDGLKEQGVVKKIF 178
Query: 181 EVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVA 240
EV SPVV+SPN F LP LD+NQ+DVVEQ++PLC+ GF+VSLISGVTGSGKTEVYLEI++
Sbjct: 179 EVASPVVESPNPNFFLPTLDQNQKDVVEQIMPLCSTGFSVSLISGVTGSGKTEVYLEIIS 238
Query: 241 AVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISV 300
+VL LGKQVLILLPEISL SAIL+RFQKRFGVKPAEWHSSLS MREKIWRQ+A+G ISV
Sbjct: 239 SVLRLGKQVLILLPEISLASAILDRFQKRFGVKPAEWHSSLSAGMREKIWRQIAQGTISV 298
Query: 301 IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATP 360
+VGVRSALFLPFKKLG+IVIDEEHDISYKQE+GILYNARDMSIVRGKIESFPV+LVSATP
Sbjct: 299 VVGVRSALFLPFKKLGIIVIDEEHDISYKQEDGILYNARDMSIVRGKIESFPVILVSATP 358
Query: 361 SIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLAR 420
SIESRVNG+S RYH HLSTRY NSALPHL+VIDMR Q + +GK LS EM++ IR+TL R
Sbjct: 359 SIESRVNGLSGRYHFFHLSTRYHNSALPHLRVIDMRDQAVERGKFLSLEMLNSIRNTLER 418
Query: 421 NEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV 480
+EQ LLFLNRRGYAPLTLCQVCG+R+KC +CSCWLVEHR +KKL+CHQCG+ Y QSC
Sbjct: 419 DEQALLFLNRRGYAPLTLCQVCGHRIKCPYCSCWLVEHRFRKKLHCHQCGYVEAYPQSCA 478
Query: 481 VCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDII 540
CG+SGKMIACG G+ERIAEEV +YFPLARISILSSDL+GG +L+LQL AIAKGE DI+
Sbjct: 479 ACGTSGKMIACGPGVERIAEEVRDYFPLARISILSSDLDGGIKKLRLQLEAIAKGEFDIV 538
Query: 541 IGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600
IGTQLVAKGHNFPRMSLVGV+DGDLGL NADLRSSERTFQLLSQVTGRAGRFGLKS+GLI
Sbjct: 539 IGTQLVAKGHNFPRMSLVGVIDGDLGLANADLRSSERTFQLLSQVTGRAGRFGLKSIGLI 598
Query: 601 QAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNL 660
QAYQP HPVMQAL+SGDADSFYESEIRAR+ V LPPFGRLAAVI+SG K QEV+ YA NL
Sbjct: 599 QAYQPIHPVMQALISGDADSFYESEIRARKEVGLPPFGRLAAVIVSGKKCQEVKKYACNL 658
Query: 661 KEHAPRSSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALR 720
KE AP SSDIVVFGPAE+PLFMVRG YRFRLLIHGKRNSNLQ FF+ MYDNT K+SN+LR
Sbjct: 659 KEKAPMSSDIVVFGPAEAPLFMVRGFYRFRLLIHGKRNSNLQKFFAYMYDNTPKKSNSLR 718
Query: 721 VQFDIDPQNFL 731
VQFD+DPQ+FL
Sbjct: 719 VQFDMDPQSFL 729
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190893721|ref|YP_001980263.1| primosomal protein N' (replication factor Y) protein [Rhizobium etli CIAT 652] Length = 738 | Back alignment and organism information |
|---|
| >gi|241206630|ref|YP_002977726.1| primosome assembly protein PriA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 738 | Back alignment and organism information |
|---|
| >gi|327188924|gb|EGE56116.1| primosomal protein N' (replication factor Y) protein [Rhizobium etli CNPAF512] Length = 809 | Back alignment and organism information |
|---|
| >gi|116254144|ref|YP_769982.1| primosome assembly protein PriA [Rhizobium leguminosarum bv. viciae 3841] Length = 738 | Back alignment and organism information |
|---|
| >gi|86359456|ref|YP_471348.1| primosome assembly protein PriA [Rhizobium etli CFN 42] Length = 738 | Back alignment and organism information |
|---|
| >gi|209551229|ref|YP_002283146.1| primosome assembly protein PriA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 738 | Back alignment and organism information |
|---|
| >gi|222087443|ref|YP_002545980.1| primosomal protein N' [Agrobacterium radiobacter K84] Length = 743 | Back alignment and organism information |
|---|
| >gi|319780911|ref|YP_004140387.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 727 | Back alignment and organism information |
|---|
| >gi|150398124|ref|YP_001328591.1| primosome assembly protein PriA [Sinorhizobium medicae WSM419] Length = 734 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 731 | primosome assembly protein PriA [Candidatus Liberibacte | ||
| PRK05580 | 679 | PRK05580, PRK05580, primosome assembly protein PriA; Va | 0.0 | |
| COG1198 | 730 | COG1198, PriA, Primosomal protein N' (replication facto | 0.0 | |
| TIGR00595 | 505 | TIGR00595, priA, primosomal protein N' | 1e-156 | |
| PRK14873 | 665 | PRK14873, PRK14873, primosome assembly protein PriA; Pr | 3e-24 | |
| pfam00270 | 167 | pfam00270, DEAD, DEAD/DEAH box helicase | 6e-18 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-17 | |
| COG1197 | 1139 | COG1197, Mfd, Transcription-repair coupling factor (sup | 1e-11 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-11 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication, rec | 1e-10 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 1e-09 | |
| PRK10689 | 1147 | PRK10689, PRK10689, transcription-repair coupling facto | 1e-07 | |
| TIGR00580 | 926 | TIGR00580, mfd, transcription-repair coupling factor (m | 2e-10 | |
| COG4098 | 441 | COG4098, comFA, Superfamily II DNA/RNA helicase require | 5e-07 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General func | 4e-04 | |
| KOG0952 | 1230 | KOG0952, KOG0952, KOG0952, DNA/RNA helicase MER3/SLH1, | 0.004 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Pr | 5e-06 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA replica | 1e-04 | |
| COG1110 | 1187 | COG1110, COG1110, Reverse gyrase [DNA replication, reco | 0.003 | |
| pfam05707 | 183 | pfam05707, Zot, Zonular occludens toxin (Zot) | 0.004 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily II [ | 9e-05 | |
| TIGR00631 | 655 | TIGR00631, uvrb, excinuclease ABC, B subunit | 1e-04 | |
| COG0556 | 663 | COG0556, UvrB, Helicase subunit of the DNA excision rep | 3e-04 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-terminal dom | 0.002 | |
| pfam04851 | 103 | pfam04851, ResIII, Type III restriction enzyme, res sub | 4e-04 |
| >gnl|CDD|180144 PRK05580, PRK05580, primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|161946 TIGR00595, priA, primosomal protein N' | Back alignment and domain information |
|---|
| >gnl|CDD|184873 PRK14873, PRK14873, primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|144015 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
| >gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|28927 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|31393 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|161975 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|161938 TIGR00580, mfd, transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >gnl|CDD|33855 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|31397 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|36170 KOG0952, KOG0952, KOG0952, DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|182836 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|30860 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|31307 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|114433 pfam05707, Zot, Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
| >gnl|CDD|31261 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|128766 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|147155 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 731 | primosome assembly protein PriA [Candidatus Liberibacte | ||
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) - sup | 100.0 | |
| PRK05580 | 699 | primosome assembly protein PriA; Validated | 100.0 | |
| TIGR00595 | 524 | priA primosomal protein N'; InterPro: IPR005259 All pro | 100.0 | |
| TIGR00643 | 721 | recG ATP-dependent DNA helicase RecG; InterPro: IPR0046 | 100.0 | |
| TIGR00580 | 997 | mfd transcription-repair coupling factor; InterPro: IPR | 100.0 | |
| PRK10917 | 677 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfamily I | 100.0 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombination | 100.0 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for DNA | 99.96 | |
| PRK05298 | 657 | excinuclease ABC subunit B; Provisional | 99.77 | |
| COG1204 | 766 | Superfamily II helicase [General function prediction on | 99.73 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.66 | |
| PRK13767 | 878 | ATP-dependent helicase; Provisional | 99.62 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Transcript | 99.54 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal domai | 99.49 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, reco | 99.44 | |
| KOG0354 | 746 | consensus | 99.41 | |
| KOG0344 | 593 | consensus | 99.31 | |
| KOG0333 | 673 | consensus | 99.25 | |
| KOG0348 | 708 | consensus | 99.22 | |
| KOG0951 | 1674 | consensus | 99.19 | |
| KOG0342 | 543 | consensus | 99.12 | |
| KOG0335 | 482 | consensus | 99.01 | |
| KOG0351 | 941 | consensus | 98.84 | |
| TIGR01389 | 607 | recQ ATP-dependent DNA helicase RecQ; InterPro: IPR0062 | 98.73 | |
| KOG4284 | 980 | consensus | 98.72 | |
| KOG0328 | 400 | consensus | 98.71 | |
| KOG0327 | 397 | consensus | 98.67 | |
| KOG0352 | 641 | consensus | 98.56 | |
| TIGR00614 | 497 | recQ_fam ATP-dependent DNA helicase, RecQ family; Inter | 98.4 | |
| COG4889 | 1518 | Predicted helicase [General function prediction only] | 98.26 | |
| KOG0948 | 1041 | consensus | 96.58 | |
| PRK10689 | 1148 | transcription-repair coupling factor; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recombinati | 99.57 | |
| KOG0952 | 1230 | consensus | 99.55 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanisms] | 99.52 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function prediction onl | 99.45 | |
| KOG0345 | 567 | consensus | 99.34 | |
| PRK09694 | 878 | hypothetical protein; Provisional | 99.26 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification syst | 98.98 | |
| KOG0350 | 620 | consensus | 98.75 | |
| KOG0334 | 997 | consensus | 98.73 | |
| KOG0920 | 924 | consensus | 97.84 | |
| COG0610 | 962 | Type I site-specific restriction-modification system, R | 96.51 | |
| KOG0353 | 695 | consensus | 95.96 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 92.64 | |
| KOG0387 | 923 | consensus | 91.07 | |
| PRK01297 | 472 | ATP-dependent RNA helicase RhlB; Provisional | 99.83 | |
| PRK04537 | 574 | ATP-dependent RNA helicase RhlB; Provisional | 99.8 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.76 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.76 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.76 | |
| PRK02362 | 736 | ski2-like helicase; Provisional | 99.75 | |
| PRK00254 | 717 | ski2-like helicase; Provisional | 99.74 | |
| PTZ00110 | 602 | helicase; Provisional | 99.7 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA replicat | 99.63 | |
| KOG0343 | 758 | consensus | 98.89 | |
| KOG0347 | 731 | consensus | 98.63 | |
| PRK11192 | 417 | ATP-dependent RNA helicase SrmB; Provisional | 99.82 | |
| PRK10590 | 457 | ATP-dependent RNA helicase RhlE; Provisional | 99.8 | |
| PRK11776 | 459 | ATP-dependent RNA helicase DbpA; Provisional | 99.78 | |
| KOG0330 | 476 | consensus | 99.37 | |
| KOG0346 | 569 | consensus | 98.93 | |
| TIGR00631 | 667 | uvrb excinuclease ABC, B subunit; InterPro: IPR004807 A | 99.78 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfamily I | 96.61 | |
| TIGR00580 | 997 | mfd transcription-repair coupling factor; InterPro: IPR | 95.41 | |
| PRK13766 | 764 | Hef nuclease; Provisional | 99.77 | |
| pfam00270 | 167 | DEAD DEAD/DEAH box helicase. Members of this family inc | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.53 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. subt | 99.43 | |
| PRK11448 | 1126 | hsdR type I restriction enzyme EcoKI subunit R; Provisi | 99.14 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, recombina | 98.82 | |
| KOG0947 | 1248 | consensus | 98.38 | |
| PRK04914 | 955 | ATP-dependent helicase HepA; Validated | 98.31 | |
| PRK11131 | 1295 | ATP-dependent RNA helicase HrpA; Provisional | 97.99 | |
| pfam05876 | 552 | Terminase_GpA Phage terminase large subunit (GpA). This | 97.86 | |
| TIGR01074 | 677 | rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 | 96.53 | |
| TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 96.02 | |
| PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 95.46 | |
| TIGR01448 | 769 | recD_rel helicase, RecD/TraA family; InterPro: IPR00634 | 95.23 | |
| TIGR00631 | 667 | uvrb excinuclease ABC, B subunit; InterPro: IPR004807 A | 95.03 | |
| PRK06526 | 254 | transposase; Provisional | 94.94 | |
| PRK08181 | 269 | transposase; Validated | 94.86 | |
| PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 94.09 | |
| KOG0949 | 1330 | consensus | 92.52 | |
| TIGR01967 | 1320 | DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IP | 91.71 | |
| PRK09183 | 258 | transposase/IS protein; Provisional | 91.18 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair comple | 99.69 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.17 | |
| pfam00271 | 78 | Helicase_C Helicase conserved C-terminal domain. The Pr | 97.9 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. | 94.16 | |
| KOG0331 | 519 | consensus | 99.48 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General func | 99.35 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.16 | |
| KOG0338 | 691 | consensus | 98.92 | |
| KOG0339 | 731 | consensus | 98.73 | |
| KOG0336 | 629 | consensus | 98.66 | |
| KOG0332 | 477 | consensus | 98.35 | |
| KOG0326 | 459 | consensus | 98.29 | |
| TIGR01970 | 858 | DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IP | 94.07 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse family | 99.43 | |
| pfam07652 | 146 | Flavi_DEAD Flavivirus DEAD domain. | 98.1 | |
| KOG0950 | 1008 | consensus | 97.32 | |
| pfam05707 | 183 | Zot Zonular occludens toxin (Zot). This family consists | 97.15 | |
| PHA00350 | 402 | putative assembly protein | 96.95 | |
| pfam07517 | 381 | SecA_DEAD SecA DEAD-like domain. SecA protein binds to | 96.92 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'-3' he | 96.83 | |
| PRK05636 | 507 | replicative DNA helicase; Provisional | 96.62 | |
| PRK10590 | 457 | ATP-dependent RNA helicase RhlE; Provisional | 96.48 | |
| PRK08082 | 453 | consensus | 96.39 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 96.29 | |
| PRK11192 | 417 | ATP-dependent RNA helicase SrmB; Provisional | 96.25 | |
| TIGR02237 | 223 | recomb_radB DNA repair and recombination protein RadB; | 96.24 | |
| PRK07263 | 453 | consensus | 96.06 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexameric h | 96.01 | |
| PRK11776 | 459 | ATP-dependent RNA helicase DbpA; Provisional | 95.9 | |
| PRK04537 | 574 | ATP-dependent RNA helicase RhlB; Provisional | 95.77 | |
| PRK08116 | 262 | hypothetical protein; Validated | 95.75 | |
| TIGR02759 | 613 | TraD_Ftype type IV conjugative transfer system coupling | 95.74 | |
| KOG0329 | 387 | consensus | 95.69 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 95.56 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 95.39 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 95.29 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 94.96 | |
| PRK08506 | 473 | replicative DNA helicase; Provisional | 94.9 | |
| KOG0922 | 674 | consensus | 94.89 | |
| KOG0924 | 1042 | consensus | 94.74 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family, HK0 | 94.61 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and metaboli | 94.6 | |
| KOG0736 | 953 | consensus | 94.57 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 94.49 | |
| PRK08694 | 468 | consensus | 94.38 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA replicat | 94.23 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 94.19 | |
| PRK09165 | 484 | replicative DNA helicase; Provisional | 94.18 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 94.05 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 93.5 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 93.25 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 92.8 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General function p | 92.45 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (predict | 92.28 | |
| PRK04296 | 197 | thymidine kinase; Provisional | 92.21 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 91.41 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 90.66 | |
| KOG0923 | 902 | consensus | 90.33 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.26 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, and rep | 99.17 | |
| TIGR01054 | 1843 | rgy reverse gyrase; InterPro: IPR005736 DNA topoisomera | 98.49 | |
| KOG0340 | 442 | consensus | 98.17 | |
| pfam00176 | 295 | SNF2_N SNF2 family N-terminal domain. This domain is fo | 97.59 | |
| PRK08074 | 932 | bifunctional ATP-dependent DNA helicase/DNA polymerase | 97.41 | |
| pfam09848 | 348 | DUF2075 Uncharacterized conserved protein (DUF2075). Th | 97.36 | |
| PRK07952 | 242 | DNA replication protein DnaC; Validated | 97.36 | |
| KOG1805 | 1100 | consensus | 97.27 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.73 | |
| COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recombinat | 95.49 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair comple | 95.1 | |
| KOG0344 | 593 | consensus | 94.77 | |
| KOG1002 | 791 | consensus | 94.58 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in homo | 94.54 | |
| PRK09354 | 350 | recA recombinase A; Provisional | 94.47 | |
| KOG4439 | 901 | consensus | 94.3 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 94.15 | |
| KOG0390 | 776 | consensus | 93.8 | |
| TIGR00614 | 497 | recQ_fam ATP-dependent DNA helicase, RecQ family; Inter | 93.46 | |
| PRK08270 | 681 | anaerobic ribonucleoside triphosphate reductase; Provis | 92.3 | |
| KOG1123 | 776 | consensus | 92.15 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 92.06 | |
| PRK13889 | 992 | conjugal transfer relaxase TraA; Provisional | 91.82 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of proteins | 99.12 | |
| pfam04851 | 103 | ResIII Type III restriction enzyme, res subunit. | 99.0 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.41 | |
| pfam03796 | 186 | DnaB_C DnaB-like helicase C terminal domain. The hexame | 96.92 | |
| PRK05580 | 699 | primosome assembly protein PriA; Validated | 96.91 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 96.83 | |
| KOG1803 | 649 | consensus | 96.59 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 96.56 | |
| pfam00580 | 494 | UvrD-helicase UvrD/REP helicase. The Rep family helicas | 96.45 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 96.42 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 96.02 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General function p | 95.95 | |
| PRK08903 | 227 | hypothetical protein; Validated | 95.92 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 95.75 | |
| PRK06835 | 330 | DNA replication protein DnaC; Validated | 95.71 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 95.58 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 95.58 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.56 | |
| KOG0987 | 540 | consensus | 95.54 | |
| PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 95.52 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recomb | 95.48 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has roles in | 95.48 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 95.47 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation [DNA | 95.31 | |
| PRK10416 | 499 | cell division protein FtsY; Provisional | 95.1 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 94.98 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares similarity | 94.83 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.79 | |
| pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 94.52 | |
| PRK06921 | 265 | hypothetical protein; Provisional | 94.24 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.11 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracellular | 94.09 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.96 | |
| pfam10412 | 386 | TrwB_AAD_bind Type IV secretion-system coupling protein | 93.69 | |
| TIGR00064 | 284 | ftsY signal recognition particle-docking protein FtsY; | 93.68 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.66 | |
| TIGR03167 | 311 | tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Esch | 93.63 | |
| pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 93.55 | |
| PRK13700 | 732 | conjugal transfer protein TraD; Provisional | 93.39 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 93.37 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates the | 93.33 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 93.25 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacterial con | 93.23 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polymerase | 93.18 | |
| PRK04328 | 250 | hypothetical protein; Provisional | 93.14 | |
| PRK06696 | 227 | uridine kinase; Validated | 92.95 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 92.82 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 92.67 | |
| TIGR01054 | 1843 | rgy reverse gyrase; InterPro: IPR005736 DNA topoisomera | 92.1 | |
| PRK06067 | 241 | flagellar accessory protein FlaH; Validated | 92.1 | |
| KOG1802 | 935 | consensus | 91.94 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway component | 91.94 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 91.83 | |
| pfam08423 | 261 | Rad51 Rad51. Rad51 is a DNA repair and recombination pr | 91.8 | |
| PRK11784 | 333 | tRNA 2-selenouridine synthase; Provisional | 91.77 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 91.65 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 91.42 | |
| PRK07667 | 190 | uridine kinase; Provisional | 90.76 | |
| PRK13894 | 320 | conjugal transfer ATPase TrbB; Provisional | 90.51 | |
| TIGR00376 | 709 | TIGR00376 DNA helicase, putative; InterPro: IPR004483 E | 90.45 | |
| TIGR01407 | 944 | dinG_rel DnaQ family exonuclease/DinG family helicase, | 90.32 | |
| TIGR01587 | 424 | cas3_core CRISPR-associated helicase Cas3; InterPro: IP | 99.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.96 | |
| PRK12904 | 833 | preprotein translocase subunit SecA; Reviewed | 98.17 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombinatio | 98.17 | |
| PRK12906 | 823 | secA preprotein translocase subunit SecA; Reviewed | 97.94 | |
| PRK10917 | 677 | ATP-dependent DNA helicase RecG; Provisional | 97.8 | |
| TIGR00643 | 721 | recG ATP-dependent DNA helicase RecG; InterPro: IPR0046 | 97.7 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombination | 97.58 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; associat | 97.16 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function prediction onl | 96.44 | |
| CHL00122 | 891 | secA preprotein translocase subunit SecA; Validated | 96.38 | |
| PRK12326 | 775 | preprotein translocase subunit SecA; Reviewed | 96.23 | |
| PRK12903 | 885 | secA preprotein translocase subunit SecA; Reviewed | 96.19 | |
| PRK13767 | 878 | ATP-dependent helicase; Provisional | 96.16 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for DNA | 96.14 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 96.06 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 95.81 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 95.6 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, and rep | 95.1 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP binding do | 95.02 | |
| KOG0952 | 1230 | consensus | 94.84 | |
| PRK09200 | 799 | preprotein translocase subunit SecA; Reviewed | 94.57 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 94.43 | |
| PRK12902 | 946 | secA preprotein translocase subunit SecA; Reviewed | 93.9 | |
| pfam00154 | 322 | RecA recA bacterial DNA recombination protein. RecA is | 93.73 | |
| PRK12898 | 673 | secA preprotein translocase subunit SecA; Reviewed | 93.72 | |
| PRK02362 | 736 | ski2-like helicase; Provisional | 93.55 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, reco | 93.51 | |
| PRK12900 | 983 | secA preprotein translocase subunit SecA; Reviewed | 93.38 | |
| PRK12899 | 969 | secA preprotein translocase subunit SecA; Reviewed | 93.28 | |
| COG1379 | 403 | PHP family phosphoesterase with a Zn ribbon [General fu | 92.86 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 91.67 | |
| PRK00254 | 717 | ski2-like helicase; Provisional | 91.38 | |
| PRK12901 | 1111 | secA preprotein translocase subunit SecA; Reviewed | 90.42 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 90.4 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; associat | 98.6 | |
| KOG0337 | 529 | consensus | 98.09 | |
| PRK05298 | 657 | excinuclease ABC subunit B; Provisional | 96.23 | |
| TIGR00963 | 904 | secA preprotein translocase, SecA subunit; InterPro: IP | 95.05 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) - sup | 97.17 | |
| COG0846 | 250 | SIR2 NAD-dependent protein deacetylases, SIR2 family [T | 92.93 | |
| PRK00481 | 239 | NAD-dependent deacetylase; Provisional | 92.81 | |
| KOG0925 | 699 | consensus | 91.79 | |
| cd01410 | 206 | SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) | 90.43 | |
| PRK09194 | 570 | prolyl-tRNA synthetase; Provisional | 90.31 | |
| PRK10689 | 1148 | transcription-repair coupling factor; Provisional | 97.17 | |
| PRK13342 | 417 | recombination factor protein RarA; Reviewed | 93.05 | |
| KOG0341 | 610 | consensus | 97.06 | |
| KOG0953 | 700 | consensus | 95.95 | |
| PRK05582 | 692 | DNA topoisomerase I; Validated | 97.0 | |
| PRK08620 | 726 | DNA topoisomerase III; Provisional | 96.69 | |
| PRK08938 | 692 | DNA topoisomerase I; Validated | 96.48 | |
| PRK08413 | 733 | consensus | 96.41 | |
| PRK07219 | 769 | DNA topoisomerase I; Validated | 96.39 | |
| PRK09137 | 761 | DNA topoisomerase I; Validated | 95.96 | |
| COG2888 | 61 | Predicted Zn-ribbon RNA-binding protein with a function | 95.37 | |
| pfam04216 | 283 | FdhE Protein involved in formate dehydrogenase formatio | 95.21 | |
| PRK09137 | 761 | DNA topoisomerase I; Validated | 95.2 | |
| PRK03564 | 307 | formate dehydrogenase accessory protein FdhE; Provision | 95.12 | |
| PRK11788 | 389 | hypothetical protein; Provisional | 94.61 | |
| PRK05582 | 692 | DNA topoisomerase I; Validated | 94.31 | |
| PRK03824 | 135 | hypA hydrogenase nickel incorporation protein; Provisio | 93.96 | |
| PRK07220 | 740 | DNA topoisomerase I; Validated | 93.55 | |
| PRK08938 | 692 | DNA topoisomerase I; Validated | 93.26 | |
| PRK04023 | 1128 | DNA polymerase II large subunit; Validated | 93.14 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; Valida | 92.76 | |
| TIGR02487 | 655 | NrdD anaerobic ribonucleoside-triphosphate reductase; I | 92.61 | |
| PRK00564 | 117 | hypA hydrogenase nickel incorporation protein; Provisio | 92.53 | |
| PRK05823 | 691 | consensus | 92.14 | |
| pfam07191 | 70 | DUF1407 Protein of unknown function (DUF1407). This fam | 91.65 | |
| COG1675 | 176 | TFA1 Transcription initiation factor IIE, alpha subunit | 91.58 | |
| pfam10083 | 158 | DUF2321 Uncharacterized protein conserved in bacteria ( | 91.51 | |
| pfam09332 | 346 | Mcm10 Mcm10 replication factor. Mcm10 is a eukaryotic D | 91.2 | |
| COG4260 | 345 | Membrane protease subunit, stomatin/prohibitin family [ | 90.96 | |
| 100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. These sequences are the archaeal DNA-directed RNA polymerase, subunit M (also known as transcription factor S), a protein related in size and sequence to certain eukaryotic RNA polymerase small subunits, and in sequence and function to the much larger eukaryotic transcription factor IIS (TFIIS). Although originally suggested to be a subunit of the archaeal RNA polymerase, it elutes separately from active polymerase in gel filtration experiments and acts, like TFIIs, as an induction factor for RNA cleavage by RNA polymerase . ; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01384">TIGR01384 | 111 | TFS_arch transcription factor S; InterPro: IPR006288 DN | 90.96 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 domain an | 90.95 | |
| PRK11827 | 60 | hypothetical protein; Provisional | 90.5 | |
| COG4306 | 160 | Uncharacterized protein conserved in bacteria [Function | 90.44 | |
| PRK03681 | 114 | hypA hydrogenase nickel incorporation protein; Validate | 90.13 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribbon do | 90.12 | |
| pfam02562 | 205 | PhoH PhoH-like protein. PhoH is a cytoplasmic protein a | 96.72 | |
| pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 95.49 | |
| PRK11823 | 454 | DNA repair protein RadA; Provisional | 92.54 | |
| TIGR00416 | 481 | sms DNA repair protein RadA; InterPro: IPR004504 RadA/S | 92.5 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [Inorga | 90.91 | |
| TIGR00373 | 168 | TIGR00373 conserved hypothetical protein TIGR00373; Int | 96.72 | |
| PRK00349 | 944 | uvrA excinuclease ABC subunit A; Reviewed | 95.99 | |
| PRK04023 | 1128 | DNA polymerase II large subunit; Validated | 95.12 | |
| COG3357 | 97 | Predicted transcriptional regulator containing an HTH d | 93.47 | |
| TIGR03676 | 403 | aRF1/eRF1 peptide chain release factor 1, archaeal and | 92.8 | |
| TIGR02642 | 270 | phage_xxxx uncharacterized phage protein; InterPro: IPR | 92.3 | |
| COG1592 | 166 | Rubrerythrin [Energy production and conversion] | 91.17 | |
| pfam01155 | 112 | HypA Hydrogenase expression/synthesis hypA family. Four | 91.13 | |
| COG1439 | 177 | Predicted nucleic acid-binding protein, consists of a P | 90.84 | |
| PRK08620 | 726 | DNA topoisomerase III; Provisional | 96.63 | |
| PRK08413 | 733 | consensus | 94.56 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 96.3 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanisms] | 95.64 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA replicati | 95.18 | |
| PRK08074 | 932 | bifunctional ATP-dependent DNA helicase/DNA polymerase | 94.79 | |
| PRK11773 | 722 | uvrD DNA-dependent helicase II; Provisional | 94.49 | |
| pfam02146 | 177 | SIR2 Sir2 family. This region is characteristic of Sile | 90.98 | |
| PRK01297 | 472 | ATP-dependent RNA helicase RhlB; Provisional | 95.99 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 94.99 | |
| PRK04195 | 403 | replication factor C large subunit; Provisional | 92.56 | |
| PRK06450 | 336 | threonine synthase; Validated | 92.25 | |
| PRK06260 | 400 | threonine synthase; Validated | 91.38 | |
| PRK09263 | 711 | anaerobic ribonucleoside triphosphate reductase; Provis | 90.82 | |
| KOG0926 | 1172 | consensus | 95.87 | |
| KOG0951 | 1674 | consensus | 95.64 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 95.54 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 92.72 | |
| pfam00271 | 78 | Helicase_C Helicase conserved C-terminal domain. The Pr | 91.23 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / DNA re | 95.47 | |
| KOG0340 | 442 | consensus | 93.27 | |
| KOG0949 | 1330 | consensus | 92.36 | |
| PRK09694 | 878 | hypothetical protein; Provisional | 94.78 | |
| PTZ00110 | 602 | helicase; Provisional | 94.18 | |
| PRK07111 | 703 | anaerobic ribonucleoside triphosphate reductase; Provis | 92.44 | |
| PRK06319 | 864 | DNA topoisomerase I/SWI domain fusion protein; Validate | 94.77 | |
| pfam05621 | 302 | TniB Bacterial TniB protein. This family consists of se | 94.41 | |
| TIGR02782 | 315 | TrbB_P P-type conjugative transfer ATPase TrbB; InterPr | 94.23 | |
| PRK06620 | 214 | hypothetical protein; Validated | 91.62 | |
| PRK09087 | 226 | hypothetical protein; Validated | 91.35 | |
| CHL00174 | 305 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 94.04 | |
| TIGR00515 | 292 | accD acetyl-CoA carboxylase, carboxyl transferase, beta | 93.18 | |
| PRK05654 | 288 | acetyl-CoA carboxylase subunit beta; Validated | 92.95 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid metabol | 91.55 | |
| PRK06319 | 864 | DNA topoisomerase I/SWI domain fusion protein; Validate | 93.9 | |
| cd01409 | 260 | SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) | 90.71 | |
| COG3857 | 1108 | AddB ATP-dependent nuclease, subunit B [DNA replication | 93.86 | |
| PRK07219 | 769 | DNA topoisomerase I; Validated | 93.73 | |
| PRK09001 | 869 | DNA topoisomerase I; Validated | 91.19 | |
| PRK00133 | 666 | metG methionyl-tRNA synthetase; Reviewed | 90.43 | |
| TIGR02788 | 328 | VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR | 93.2 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 92.73 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 92.64 | |
| COG0068 | 750 | HypF Hydrogenase maturation factor [Posttranslational m | 92.05 | |
| TIGR00143 | 799 | hypF [NiFe] hydrogenase maturation protein HypF; InterP | 91.68 | |
| PRK08665 | 733 | ribonucleotide-diphosphate reductase subunit alpha; Val | 91.57 | |
| PRK08579 | 623 | anaerobic ribonucleoside triphosphate reductase; Provis | 90.97 | |
| TIGR02538 | 577 | type_IV_pilB type IV-A pilus assembly ATPase PilB; Inte | 91.41 | |
| TIGR00354 | 1173 | polC DNA polymerase II, large subunit DP2; InterPro: IP | 91.36 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 90.2 |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3 | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0354 consensus | Back alignment and domain information |
|---|
| >KOG0344 consensus | Back alignment and domain information |
|---|
| >KOG0333 consensus | Back alignment and domain information |
|---|
| >KOG0348 consensus | Back alignment and domain information |
|---|
| >KOG0951 consensus | Back alignment and domain information |
|---|
| >KOG0342 consensus | Back alignment and domain information |
|---|
| >KOG0335 consensus | Back alignment and domain information |
|---|
| >KOG0351 consensus | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3 | Back alignment and domain information |
|---|
| >KOG4284 consensus | Back alignment and domain information |
|---|
| >KOG0328 consensus | Back alignment and domain information |
|---|
| >KOG0327 consensus | Back alignment and domain information |
|---|
| >KOG0352 consensus | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3 | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0948 consensus | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0952 consensus | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0345 consensus | Back alignment and domain information |
|---|
| >PRK09694 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0350 consensus | Back alignment and domain information |
|---|
| >KOG0334 consensus | Back alignment and domain information |
|---|
| >KOG0920 consensus | Back alignment and domain information |
|---|