254780621
small heat shock protein
GeneID in NCBI database: | 8209621 | Locus tag: | CLIBASIA_02540 |
Protein GI in NCBI database: | 254780621 | Protein Accession: | YP_003065034.1 |
Gene range: | +(650820, 651293) | Protein Length: | 157aa |
Gene description: | small heat shock protein | ||
COG prediction: | [O] Molecular chaperone (small heat shock protein) | ||
KEGG prediction: | small heat shock protein; K04080 molecular chaperone IbpA | ||
SEED prediction: | 16 kDa heat shock protein A | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | |||
315121822 | 157 | small heat shock protein [Candidatus Liberibacter solan | 1 | 3e-74 | |
209550897 | 156 | heat shock protein Hsp20 [Rhizobium leguminosarum bv. t | 1 | 7e-46 | |
222149743 | 155 | small heat shock protein [Agrobacterium vitis S4] Lengt | 1 | 8e-46 | |
222087093 | 154 | molecular chaperone small heat shock protein [Agrobacte | 1 | 9e-46 | |
116253826 | 156 | heat shock protein A [Rhizobium leguminosarum bv. vicia | 1 | 9e-46 | |
218463809 | 156 | molecular chaperone small heat shock protein [Rhizobium | 1 | 9e-46 | |
15891075 | 160 | small heat shock protein [Agrobacterium tumefaciens str | 1 | 1e-45 | |
86359162 | 156 | molecular chaperone small heat shock protein [Rhizobium | 1 | 1e-45 | |
241206308 | 156 | heat shock protein Hsp20 [Rhizobium leguminosarum bv. t | 1 | 1e-45 | |
327189624 | 156 | molecular chaperone small heat shock protein [Rhizobium | 1 | 2e-45 |
>gi|315121822|ref|YP_004062311.1| small heat shock protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 157 | Back alignment and organism information |
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Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 134/157 (85%), Positives = 149/157 (94%) Query: 1 MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE 60 MR+DVSRIYNSAVGYDTVLSMLDGLGAPSQ+SAYPPYDIERTGENAY+IT+AV+GF SE Sbjct: 1 MRIDVSRIYNSAVGYDTVLSMLDGLGAPSQSSAYPPYDIERTGENAYKITVAVAGFSSSE 60 Query: 61 ITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYL 120 + IEVDS IL+VRGEKKSEE+ETVEYLHRGIAKRAFERRFQLADFVEV+SASLENGLLYL Sbjct: 61 LAIEVDSGILIVRGEKKSEEQETVEYLHRGIAKRAFERRFQLADFVEVVSASLENGLLYL 120 Query: 121 ELLRSVPERMKPRRIEISQSPQESTKMIEEKKKSVAA 157 EL R+VPE+MKPRRIEIS SP+ES KMIE K+++VAA Sbjct: 121 ELFRAVPEKMKPRRIEISNSPKESAKMIESKERAVAA 157 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|209550897|ref|YP_002282814.1| heat shock protein Hsp20 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 156 | Back alignment and organism information |
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>gi|222149743|ref|YP_002550700.1| small heat shock protein [Agrobacterium vitis S4] Length = 155 | Back alignment and organism information |
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>gi|222087093|ref|YP_002545628.1| molecular chaperone small heat shock protein [Agrobacterium radiobacter K84] Length = 154 | Back alignment and organism information |
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>gi|116253826|ref|YP_769664.1| heat shock protein A [Rhizobium leguminosarum bv. viciae 3841] Length = 156 | Back alignment and organism information |
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>gi|218463809|ref|ZP_03503900.1| molecular chaperone small heat shock protein [Rhizobium etli Kim 5] Length = 156 | Back alignment and organism information |
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>gi|15891075|ref|NP_356747.1| small heat shock protein [Agrobacterium tumefaciens str. C58] Length = 160 | Back alignment and organism information |
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>gi|86359162|ref|YP_471054.1| molecular chaperone small heat shock protein [Rhizobium etli CFN 42] Length = 156 | Back alignment and organism information |
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>gi|241206308|ref|YP_002977404.1| heat shock protein Hsp20 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 156 | Back alignment and organism information |
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>gi|327189624|gb|EGE56774.1| molecular chaperone small heat shock protein [Rhizobium etli CNPAF512] Length = 156 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
PRK10743 | 137 | PRK10743, PRK10743, heat shock protein IbpA; Provisiona | 4e-34 | |
PRK11597 | 142 | PRK11597, PRK11597, heat shock chaperone IbpB; Provisio | 2e-28 | |
COG0071 | 146 | COG0071, IbpA, Molecular chaperone (small heat shock pr | 2e-22 | |
KOG3591 | 173 | KOG3591, KOG3591, KOG3591, Alpha crystallins [Posttrans | 3e-07 | |
KOG0710 | 196 | KOG0710, KOG0710, KOG0710, Molecular chaperone (small h | 1e-04 | |
cd06464 | 88 | cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) | 3e-15 | |
pfam00011 | 102 | pfam00011, HSP20, Hsp20/alpha crystallin family | 9e-15 | |
cd00298 | 80 | cd00298, ACD_sHsps_p23-like, This domain family include | 1e-09 | |
cd06526 | 83 | cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of | 1e-05 | |
cd06472 | 92 | cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD | 4e-05 | |
cd06477 | 83 | cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) | 8e-04 | |
cd06471 | 93 | cd06471, ACD_LpsHSP_like, Group of bacterial proteins c | 0.001 | |
cd06481 | 87 | cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) | 0.002 | |
cd06475 | 86 | cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) | 0.002 | |
cd06470 | 90 | cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) | 3e-34 |
>gnl|CDD|182691 PRK10743, PRK10743, heat shock protein IbpA; Provisional | Back alignment and domain information |
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>gnl|CDD|183223 PRK11597, PRK11597, heat shock chaperone IbpB; Provisional | Back alignment and domain information |
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>gnl|CDD|30420 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|38798 KOG3591, KOG3591, KOG3591, Alpha crystallins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|35929 KOG0710, KOG0710, KOG0710, Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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>gnl|CDD|109080 pfam00011, HSP20, Hsp20/alpha crystallin family | Back alignment and domain information |
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>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins | Back alignment and domain information |
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>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins | Back alignment and domain information |
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>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins | Back alignment and domain information |
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>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 | Back alignment and domain information |
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>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins | Back alignment and domain information |
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>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins | Back alignment and domain information |
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>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
PRK11597 | 142 | heat shock chaperone IbpB; Provisional | 100.0 | |
PRK10743 | 137 | heat shock protein IbpA; Provisional | 100.0 | |
COG0071 | 146 | IbpA Molecular chaperone (small heat shock protein) [Po | 99.97 | |
cd06470 | 90 | ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in | 99.95 | |
pfam00011 | 102 | HSP20 Hsp20/alpha crystallin family. | 99.9 | |
cd06472 | 92 | ACD_ScHsp26_like Alpha crystallin domain (ACD) found in | 99.88 | |
cd06471 | 93 | ACD_LpsHSP_like Group of bacterial proteins containing | 99.87 | |
cd06526 | 83 | metazoan_ACD Alpha-crystallin domain (ACD) of metazoan | 99.72 | |
cd06464 | 88 | ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-c | 99.69 | |
KOG0710 | 196 | consensus | 99.65 | |
KOG3591 | 173 | consensus | 99.58 | |
cd06478 | 83 | ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-c | 99.56 | |
cd06481 | 87 | ACD_HspB9_like Alpha crystallin domain (ACD) found in m | 99.55 | |
cd06498 | 84 | ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain fou | 99.53 | |
cd06475 | 86 | ACD_HspB1_like Alpha crystallin domain (ACD) found in m | 99.52 | |
cd06497 | 86 | ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain fou | 99.49 | |
cd06476 | 83 | ACD_HspB2_like Alpha crystallin domain (ACD) found in m | 99.44 | |
cd06480 | 91 | ACD_HspB8_like Alpha-crystallin domain (ACD) found in m | 99.4 | |
cd06479 | 81 | ACD_HspB7_like Alpha crystallin domain (ACD) found in m | 99.32 | |
cd06477 | 83 | ACD_HspB3_Like Alpha crystallin domain (ACD) found in m | 99.31 | |
cd00298 | 80 | ACD_sHsps_p23-like This domain family includes the alph | 99.01 | |
cd06482 | 87 | ACD_HspB10 Alpha crystallin domain (ACD) found in mamma | 98.9 | |
pfam08190 | 325 | PIH1 pre-RNA processing PIH1/Nop17. This domain is invo | 96.72 | |
pfam04969 | 77 | CS CS domain. The CS and CHORD (pfam04968) are fused in | 96.26 | |
cd06463 | 84 | p23_like Proteins containing this p23_like domain inclu | 96.07 | |
cd06469 | 78 | p23_DYX1C1_like p23_like domain found in proteins simil | 96.06 | |
cd06466 | 84 | p23_CS_SGT1_like p23_like domain similar to the C-termi | 95.22 | |
pfam05455 | 177 | GvpH GvpH. This family consists of archaeal GvpH protei | 95.16 | |
cd06489 | 84 | p23_CS_hSgt1_like p23_like domain similar to the C-term | 91.48 | |
cd06467 | 85 | p23_NUDC_like p23_like domain of NUD (nuclear distribut | 90.6 |
>PRK11597 heat shock chaperone IbpB; Provisional | Back alignment and domain information |
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>PRK10743 heat shock protein IbpA; Provisional | Back alignment and domain information |
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>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins | Back alignment and domain information |
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>pfam00011 HSP20 Hsp20/alpha crystallin family | Back alignment and domain information |
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>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins | Back alignment and domain information |
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>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 | Back alignment and domain information |
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>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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>KOG0710 consensus | Back alignment and domain information |
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>KOG3591 consensus | Back alignment and domain information |
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>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 | Back alignment and domain information |
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>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins | Back alignment and domain information |
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>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) | Back alignment and domain information |
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>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins | Back alignment and domain information |
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>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) | Back alignment and domain information |
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>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins | Back alignment and domain information |
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>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 | Back alignment and domain information |
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>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins | Back alignment and domain information |
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>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins | Back alignment and domain information |
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>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins | Back alignment and domain information |
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>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins | Back alignment and domain information |
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>pfam08190 PIH1 pre-RNA processing PIH1/Nop17 | Back alignment and domain information |
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>pfam04969 CS CS domain | Back alignment and domain information |
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>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 | Back alignment and domain information |
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>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 | Back alignment and domain information |
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>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) | Back alignment and domain information |
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>pfam05455 GvpH GvpH | Back alignment and domain information |
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>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins | Back alignment and domain information |
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>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
2klr_A | 175 | Solid-State Nmr Structure Of The Alpha-Crystallin D | 2e-05 | |
1gme_A | 151 | Crystal Structure And Assembly Of An Eukaryotic Sma | 4e-05 | |
3gt6_A | 103 | Crystal Structure Of The Hspa From Xanthomonas Axon | 4e-05 | |
3gla_A | 100 | Crystal Structure Of The Hspa From Xanthomonas Axon | 6e-05 | |
1shs_A | 147 | Small Heat Shock Protein From Methanococcus Jannasc | 2e-04 |
gi|300193094|pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain In Alphab- Crystallin Oligomers Length = 175 | Back alignment and structure |
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 35/168 (20%) Query: 2 RLDVSRIYNSAVGYDTVL-------SMLDGLGAPSQTSAYPP------------YDIERT 42 R ++ + +D + + S PP R Sbjct: 11 RRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRL 70 Query: 43 GENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQL 102 ++ + + + V F P E+ ++V ++ V G+ G R F R++++ Sbjct: 71 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKH------EERQDEHGFISREFHRKYRI 124 Query: 103 ADFVE---VMSASLENGLLYLELLRSV---PERMKPRRIEISQSPQES 144 V+ + S+ +G+L + R PE R I I++ + + Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPE----RTIPITREEKPA 168 |
>gi|17942916|pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 | Back alignment and structure |
>gi|323462845|pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 | Back alignment and structure |
>gi|225734323|pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 | Back alignment and structure |
gi|5822407|pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii Length = 147 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
1gme_A | 151 | Heat shock protein 16.9B; small heat shock protein, cha | 6e-17 | |
1shs_A | 147 | Small heat shock protein; chaperone, beta-sandwich, str | 4e-16 | |
3l1e_A | 106 | Alpha-crystallin A chain; lens transparency, polydisper | 6e-15 | |
2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, molecula | 9e-15 | |
2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, molecula | 7e-12 | |
3gla_A | 100 | Low molecular weight heat shock protein; HSPA, SHP, SHS | 2e-13 | |
2wj5_A | 101 | Heat shock protein beta-6; chaperone, disulfide bond, s | 2e-12 | |
3aab_A | 123 | Putative uncharacterized protein ST1653; alpha-crystall | 3e-12 | |
2klr_A | 175 | Alpha-crystallin B chain; protein, dimer, oligomer, het | 2e-10 | |
2wj7_A | 94 | Alpha-crystallin B chain; desmin-related myopathy, phos | 2e-09 |
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 | Back alignment and structure |
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Score = 82.0 bits (202), Expect = 6e-17 Identities = 30/128 (23%), Positives = 66/128 (51%), Gaps = 5/128 (3%) Query: 15 YDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVD-SSILMVR 73 + +++ + G G+ + A D + T A+ + G E+ +EV+ ++L+V Sbjct: 24 FRSIVPAISGGGSETAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVS 82 Query: 74 GEKKS-EEKETVEYLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERM 130 GE+ +E + ++ + F RRF+L + +V + A LENG+L + + ++ ++ Sbjct: 83 GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP 142 Query: 131 KPRRIEIS 138 + + I+IS Sbjct: 143 EVKAIQIS 150 |
>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} SCOP: b.15.1.1 Length = 147 | Back alignment and structure |
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>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 | Back alignment and structure |
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>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 | Back alignment and structure |
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>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 | Back alignment and structure |
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>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} Length = 100 | Back alignment and structure |
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>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 | Back alignment and structure |
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>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii str} PDB: 3aac_A Length = 123 | Back alignment and structure |
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>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} Length = 175 | Back alignment and structure |
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>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} Length = 94 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
1gme_A | 151 | Heat shock protein 16.9B; small heat shock protein, cha | 99.94 | |
1shs_A | 147 | Small heat shock protein; chaperone, beta-sandwich, str | 99.93 | |
2klr_A | 175 | Alpha-crystallin B chain; protein, dimer, oligomer, het | 99.89 | |
3gla_A | 100 | Low molecular weight heat shock protein; HSPA, SHP, SHS | 99.87 | |
3aab_A | 123 | Putative uncharacterized protein ST1653; alpha-crystall | 99.85 | |
3l1e_A | 106 | Alpha-crystallin A chain; lens transparency, polydisper | 99.81 | |
2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, molecula | 99.78 | |
2wj7_A | 94 | Alpha-crystallin B chain; desmin-related myopathy, phos | 99.78 | |
2wj5_A | 101 | Heat shock protein beta-6; chaperone, disulfide bond, s | 99.76 | |
2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, molecula | 99.67 | |
3igf_A | 374 | ALL4481 protein; two-domained protein consisting of the | 98.23 | |
2xcm_C | 92 | SGT1-like protein, cytosolic heat shock protein 90; cha | 96.6 | |
1wh0_A | 134 | Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domai | 96.44 | |
1rl1_A | 114 | Suppressor of G2 allele of SKP1 homolog; beta sandwich, | 95.7 | |
3eud_A | 115 | Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA sn | 95.39 | |
2k8q_A | 134 | Protein SHQ1; beta-sandwich, CS domain, nucleus, struct | 92.14 | |
2o30_A | 131 | Nuclear movement protein; MCSG, structural genomics, PS | 91.44 |
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A | Back alignment and structure |
---|
Probab=99.94 E-value=3.8e-26 Score=180.71 Aligned_cols=106 Identities=27% Similarity=0.413 Sum_probs=90.2 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECCC-CCCCCCEEEEEEECCEEEEEEECCCCCEEE Q ss_conf 888843689948993999997011770214999962-179999730332-355662134553023046889738661581 Q gi|254780621|r 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDS-SILMVRGEKKSE-EKETVEYLHRGIAKRAFERRFQLADFVEVM 109 (157) Q Consensus 32 ~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~-~~LtI~g~~~~~-~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~~ 109 (157) .++|++||+++ +++|+|+++|||++++||+|++++ +.|+|+|+++.+ +.++..|+++|+.+|+|+|+|.||++++.. T Consensus 41 ~~~p~~di~e~-~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 119 (151) T 1gme_A 41 FANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 119 (151) T ss_dssp HGGGCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG T ss_pred CCCCCEEEEEC-CCEEEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCEEECC T ss_conf 67883579987-99799999969997062399997897644102112445124463678777353698999888468113 Q ss_pred --EEEEECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf --03852885999974068601187288733 Q gi|254780621|r 110 --SASLENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 110 --~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) +|+|+||||+|+|||..++..++++|+|+ T Consensus 120 ~i~A~~~dGvL~I~lpK~~~~~~~~~~I~I~ 150 (151) T 1gme_A 120 EVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150 (151) T ss_dssp GCEEEEETTEEEEEEECCCCCTTCCCCCCCC T ss_pred CEEEEEECCEEEEEEECCCCCCCCCEEEECC T ss_conf 1379987999999997577677886288446 |
>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} SCOP: b.15.1.1 | Back alignment and structure |
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>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} | Back alignment and structure |
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>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} | Back alignment and structure |
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>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii str} PDB: 3aac_A | Back alignment and structure |
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>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A | Back alignment and structure |
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>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
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>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} PDB: 3l1g_A | Back alignment and structure |
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>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} | Back alignment and structure |
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>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
---|
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} | Back alignment and structure |
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>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* | Back alignment and structure |
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>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 | Back alignment and structure |
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>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 | Back alignment and structure |
---|
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
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>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
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>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi gb-m1} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
157 | small heat shock protein [Candidatus Liberibacter asiat | |||
d1gmea_ | 150 | b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum | 2e-15 | |
d1shsa_ | 115 | b.15.1.1 (A:) Small heat shock protein {Archaeon Methan | 2e-15 |
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 | Back information, alignment and structure |
---|
class: All beta proteins fold: HSP20-like chaperones superfamily: HSP20-like chaperones family: HSP20 domain: Small heat shock protein species: Wheat (Triticum aestivum) [TaxId: 4565] Score = 75.6 bits (185), Expect = 2e-15 Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 14 GYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDS-SILMV 72 + +++ + G G+ + A D + T A+ + G E+ +EV+ ++L+V Sbjct: 22 TFRSIVPAISGGGSETAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVV 80 Query: 73 RGEKKSEEKETVE-YLHRGIAKRAFERRFQLADFV--EVMSASLENGLLYLELLRSVPER 129 GE+ E+++ + + + F RRF+L + E + A LENG+L + + ++ ++ Sbjct: 81 SGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140 Query: 130 MKPRRIEIS 138 + + I+IS Sbjct: 141 PEVKAIQIS 149 |
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
d1gmea_ | 150 | Small heat shock protein {Wheat (Triticum aestivum) [Ta | 99.93 | |
d1shsa_ | 115 | Small heat shock protein {Archaeon Methanococcus jannas | 99.88 | |
d1rl1a_ | 92 | Suppressor of G2 allele of skp1 homolog, gst1 {Human (H | 96.44 | |
d1wh0a_ | 134 | Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human | 96.02 |
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
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class: All beta proteins fold: HSP20-like chaperones superfamily: HSP20-like chaperones family: HSP20 domain: Small heat shock protein species: Wheat (Triticum aestivum) [TaxId: 4565] Probab=99.93 E-value=7.5e-26 Score=177.37 Aligned_cols=105 Identities=27% Similarity=0.429 Sum_probs=89.5 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECCCC-CCCCCEEEEEEECCEEEEEEECCCCCEE-- Q ss_conf 88843689948993999997011770214999962-1799997303323-5566213455302304688973866158-- Q gi|254780621|r 33 AYPPYDIERTGENAYRITIAVSGFHPSEITIEVDS-SILMVRGEKKSEE-KETVEYLHRGIAKRAFERRFQLADFVEV-- 108 (157) Q Consensus 33 ~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~-~~LtI~g~~~~~~-~~~~~~~~~e~~~~~F~R~f~Lp~~ve~-- 108 (157) +.|++||.++ +++|+|+++|||++++||+|++++ +.|+|+|+++.+. .++..|+++|+.+|+|+|+|.||++++. T Consensus 41 ~~p~~dv~e~-~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 119 (150) T d1gmea_ 41 ANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEE 119 (150) T ss_dssp GGGCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGG T ss_pred CCCCEEEEEC-CCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEECE T ss_conf 7873258987-997999999099964777999997653037888701454441225550023630889988788754031 Q ss_pred EEEEEECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf 103852885999974068601187288733 Q gi|254780621|r 109 MSASLENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 109 ~~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) ++|+|+||||+|++||..++..+.++|+|+ T Consensus 120 i~A~~~nGvL~I~lpK~~~~~~~~~~I~I~ 149 (150) T d1gmea_ 120 VKAGLENGVLTVTVPKAEVKKPEVKAIQIS 149 (150) T ss_dssp CEEEEETTEEEEEEECCCCCTTCCCCCCCC T ss_pred EEEEEECCEEEEEEECCCCCCCCCEEEECC T ss_conf 689987999999987377678886388546 |
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 157 | small heat shock protein [Candidatus Liberibacter | ||
1gme_A_37-151 | 115 | (A:37-151) Heat shock protein 16.9B; small heat sh | 1e-16 | |
3gla_A_ | 100 | (A:) Low molecular weight heat shock protein; HSPA | 2e-15 | |
2wj5_A_ | 101 | (A:) Heat shock protein beta-6; chaperone, disulfi | 6e-15 | |
1shs_A_ | 147 | (A:) Small heat shock protein; chaperone, beta-san | 7e-15 | |
2bol_A_95-190 | 96 | (A:95-190) TSP36, small heat shock protein; A-crys | 3e-13 | |
3igf_A_298-374 | 77 | (A:298-374) ALL4481 protein; two-domained protein | 6e-05 |
>1gme_A (A:37-151) Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum}Length = 115 | Back alignment and structure |
---|
Score = 80.1 bits (197), Expect = 1e-16 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 29 SQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE--Y 86 + A D + T A+ + G E+ +EV+ ++V ++++EKE + Sbjct: 2 TAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKW 60 Query: 87 LHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIEIS 138 + F RRF+L + +V + A LENG+L + + ++ ++ + + I+IS Sbjct: 61 HRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 114 |
>3gla_A (A:) Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV}Length = 100 | Back alignment and structure |
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>2wj5_A (A:) Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}Length = 101 | Back alignment and structure |
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>1shs_A (A:) Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii}Length = 147 | Back alignment and structure |
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>2bol_A (A:95-190) TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}Length = 96 | Back alignment and structure |
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>3igf_A (A:298-374) ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}Length = 77 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 157 | small heat shock protein [Candidatus Liberibacter asiat | ||
1shs_A_ | 147 | Small heat shock protein; chaperone, beta-sandwich | 99.92 | |
1gme_A_37-151 | 115 | Heat shock protein 16.9B; small heat shock protein | 99.86 | |
3gla_A_ | 100 | Low molecular weight heat shock protein; HSPA, SHP | 99.83 | |
2wj5_A_ | 101 | Heat shock protein beta-6; chaperone, disulfide bo | 99.82 | |
2bol_A_95-190 | 96 | TSP36, small heat shock protein; A-crystallin, mol | 99.75 | |
3igf_A_298-374 | 77 | ALL4481 protein; two-domained protein consisting o | 99.52 | |
2jki_S_ | 90 | SGT1-like protein, cytosolic heat shock protein 90 | 98.23 | |
2bol_A_60-94_191-314 | 159 | TSP36, small heat shock protein; A-crystallin, mol | 97.98 | |
1rl1_A_ | 114 | Suppressor of G2 allele of SKP1 homolog; beta sand | 97.69 | |
1wh0_A_ | 134 | Ubiquitin carboxyl-terminal hydrolase 19; USP, CS | 97.27 | |
2o30_A_ | 131 | Nuclear movement protein; MCSG, structural genomic | 96.89 | |
1x5m_A_ | 127 | Calcyclin-binding protein; CS domain, structural g | 96.21 | |
3eud_A_ | 115 | Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A | 95.66 | |
1wfi_A_ | 131 | Nuclear distribution gene C homolog; NUDC, riken s | 95.03 | |
2cr0_A_ | 121 | Nuclear migration protein NUDC; CS domain, beta sa | 93.3 | |
2k8q_A_ | 134 | Protein SHQ1; beta-sandwich, CS domain, nucleus, s | 92.8 | |
2kmw_A_ | 150 | Uncharacterized protein AT3G03773; protein structu | 90.88 | |
2wj7_A_22-65 | 44 | Alpha-crystallin B chain; desmin-related myopathy, | 98.21 |
>1shs_A (A:) Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
---|
Probab=99.92 E-value=2.7e-24 Score=170.20 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=97.8 Q ss_pred HHHHHHHHHHHHC--------CCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHEEEEEECCEEEEEEEECCC--CCCCC Q ss_conf 6788976454106--------6777888843689948993999997011770214999962179999730332--35566 Q gi|254780621|r 15 YDTVLSMLDGLGA--------PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSE--EKETV 84 (157) Q Consensus 15 fD~~f~~~~~~~~--------~~~~~~~P~~dI~~~~e~~y~i~~~lPG~~kedi~V~v~~~~LtI~g~~~~~--~~~~~ 84 (157) ||++++.++.... .....+.|++||+++ +++|.|.++|||++++||+|+++++.|+|+|++... +.... T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~di~e~-~~~~~i~~~lPG~~~edi~V~~~~~~l~i~~~~~~~~~~~~~~ 93 (147) T 1shs_A 15 FKEFFATPMTGTTMIQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER 93 (147) T ss_dssp ------------------CCCEEEEESCCCEEEEEC-SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCE T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCE T ss_conf 887641423244333543332346678883789984-9979999988998422499998588899999962334214650 Q ss_pred CEEEEEEECCEEEEEEECCCCCEEE--EEEEECCEEEEEEECCCCHHHCCEEEEEC Q ss_conf 2134553023046889738661581--03852885999974068601187288733 Q gi|254780621|r 85 EYLHRGIAKRAFERRFQLADFVEVM--SASLENGLLYLELLRSVPERMKPRRIEIS 138 (157) Q Consensus 85 ~~~~~e~~~~~F~R~f~Lp~~ve~~--~A~~~nGiLtI~lpK~~pe~~~~r~I~I~ 138 (157) +++++|+.+|+|.|+|.||++++.. +|+|+||||+|++||. +..++|+|+|. T Consensus 94 ~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~ipK~--~~~~~~~I~Iq 147 (147) T 1shs_A 94 IIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGINIE 147 (147) T ss_dssp EEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEEBC--GGGCCEECCCC T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEEEC--CCCCCCEEEEC T ss_conf 6864000257538999898881124339999899999999826--77898026609 |
>1gme_A (A:37-151) Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} | Back alignment and structure |
---|
>3gla_A (A:) Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} | Back alignment and structure |
---|
>2wj5_A (A:) Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} | Back alignment and structure |
---|
>2bol_A (A:95-190) TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
---|
>3igf_A (A:298-374) ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} | Back alignment and structure |
---|
>2jki_S (S:) SGT1-like protein, cytosolic heat shock protein 90; HSP90 SGT1, stress response, chaperone; HET: ADP; 3.3A {Arabidopsis thaliana} | Back alignment and structure |
---|
>2bol_A (A:60-94,A:191-314) TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
---|
>1rl1_A (A:) Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} | Back alignment and structure |
---|
>1wh0_A (A:) Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
---|
>2o30_A (A:) Nuclear movement protein; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.66A {Encephalitozoon cuniculi gb-m1} | Back alignment and structure |
---|
>1x5m_A (A:) Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
---|
>3eud_A (A:) Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
---|
>1wfi_A (A:) Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} | Back alignment and structure |
---|
>2cr0_A (A:) Nuclear migration protein NUDC; CS domain, beta sandwich, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
---|
>2k8q_A (A:) Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
---|
>2kmw_A (A:) Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
---|
>2wj7_A (A:22-65) Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} | Back alignment and structure |
---|