254780659

254780659

hypothetical protein CLIBASIA_02730

GeneID in NCBI database:8209662Locus tag:CLIBASIA_02730
Protein GI in NCBI database:254780659Protein Accession:YP_003065072.1
Gene range:-(613560, 614384)Protein Length:274aa
Gene description:hypothetical protein
COG prediction:[S] Uncharacterized protein conserved in bacteria
KEGG prediction:hypothetical protein; K09769 hypothetical protein
SEED prediction:FIG006542: Phosphoesterase
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
cEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHccccEEEcccccccHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEEEEEccHHccccccccHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHccccEEEEEEccccccccHHHccccccEEEEcccccccccccccccHHHHHHHHHHccccccEEEccccEEEEEEEEEEccccccEEEEEEEEEccccccccccccc
cEEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHccccEEEcccccccHHHHHHHHHHccccEcccccccccccccEEEEEEccccEEEEEEEccccccccccccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHccccEEEEEEcccccccccHHccccccEEEEccccccccccEEccccHHHHHHHHcccccccEEcccccEEEEEEEcccccccccEEEEEEEEEccccccccccccc
mrllflgdivgkTGRSIVYEMLPRLIRDFQLDFVIangensaggfgiTEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHckflrpanyppntpgngsglycakngsnVLVANIMGRvfmnpllddpfrtadkilatcplkeqadVIVFDFhaettsekqcfahfvdsraslvvgththiptadaqildggtgyitdlgmcgdynssigldkeepinrfitqiprnrfviangpatlCGICAEisdvtglaekiapirigprlsetrpdfwt
mrllflgdivgktgRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHThiptadaqildGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAekiapirigprlsetrpdfwt
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSE***DFWT
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
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MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT
MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
315122157274 hypothetical protein CKC_02035 [Candidatus Liberibacter 1 1e-144
222149682274 hypothetical protein Avi_3650 [Agrobacterium vitis S4] 1 1e-120
241206195274 metallophosphoesterase [Rhizobium leguminosarum bv. tri 1 1e-119
15891218274 hypothetical protein Atu3730 [Agrobacterium tumefaciens 1 1e-119
332716460274 hypothetical protein AGROH133_12043 [Agrobacterium sp. 1 1e-119
190893285274 phosphatase [Rhizobium etli CIAT 652] Length = 274 1 1e-119
116253719274 phosphatase [Rhizobium leguminosarum bv. viciae 3841] L 1 1e-118
150397843274 metallophosphoesterase [Sinorhizobium medicae WSM419] L 1 1e-118
222086994274 hypothetical protein Arad_3706 [Agrobacterium radiobact 1 1e-118
327194137274 metallophosphoesterase [Rhizobium etli CNPAF512] Length 1 1e-118
>gi|315122157|ref|YP_004062646.1| hypothetical protein CKC_02035 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 274 Back     alignment and organism information
 Score =  514 bits (1323), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/274 (88%), Positives = 259/274 (94%)

Query: 1   MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
           MRLLFLGDIVGK GRSIVY+ LPRLIRDF+LDFV+ANGENSAGGFGITEKIF EM+E GI
Sbjct: 1   MRLLFLGDIVGKAGRSIVYDTLPRLIRDFKLDFVVANGENSAGGFGITEKIFLEMIEIGI 60

Query: 61  DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120
           DVITTGNH WDKREAL+FSQRH  FLRPANYP +TPGNGSGLY AKNG+NVLV+NIMGR+
Sbjct: 61  DVITTGNHSWDKREALIFSQRHHHFLRPANYPLDTPGNGSGLYKAKNGANVLVSNIMGRI 120

Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180
           FMNP+LDDPFRT+DKIL TCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT
Sbjct: 121 FMNPILDDPFRTSDKILETCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180

Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240
           HIPTADAQILDGGTGYI+DLGMCGDYNSSIGLDKEEPINRFI+QIP NRFV+ANGPATLC
Sbjct: 181 HIPTADAQILDGGTGYISDLGMCGDYNSSIGLDKEEPINRFISQIPHNRFVVANGPATLC 240

Query: 241 GICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT 274
           GICA+ISDVTGL EKIAPIRIG RL +T PDFWT
Sbjct: 241 GICADISDVTGLTEKIAPIRIGARLQQTSPDFWT 274



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222149682|ref|YP_002550639.1| hypothetical protein Avi_3650 [Agrobacterium vitis S4] Length = 274 Back     alignment and organism information
>gi|241206195|ref|YP_002977291.1| metallophosphoesterase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 274 Back     alignment and organism information
>gi|15891218|ref|NP_356890.1| hypothetical protein Atu3730 [Agrobacterium tumefaciens str. C58] Length = 274 Back     alignment and organism information
>gi|332716460|ref|YP_004443926.1| hypothetical protein AGROH133_12043 [Agrobacterium sp. H13-3] Length = 274 Back     alignment and organism information
>gi|190893285|ref|YP_001979827.1| phosphatase [Rhizobium etli CIAT 652] Length = 274 Back     alignment and organism information
>gi|116253719|ref|YP_769557.1| phosphatase [Rhizobium leguminosarum bv. viciae 3841] Length = 274 Back     alignment and organism information
>gi|150397843|ref|YP_001328310.1| metallophosphoesterase [Sinorhizobium medicae WSM419] Length = 274 Back     alignment and organism information
>gi|222086994|ref|YP_002545528.1| hypothetical protein Arad_3706 [Agrobacterium radiobacter K84] Length = 274 Back     alignment and organism information
>gi|327194137|gb|EGE61007.1| metallophosphoesterase [Rhizobium etli CNPAF512] Length = 274 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
COG1692266 COG1692, COG1692, Uncharacterized protein conserved in 1e-106
TIGR00282266 TIGR00282, TIGR00282, metallophosphoesterase, MG_246/BB 1e-70
cd07382255 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and 1e-112
pfam00149186 pfam00149, Metallophos, Calcineurin-like phosphoesteras 5e-07
pfam09587237 pfam09587, PGA_cap, Bacterial capsule synthesis protein 2e-05
smart00854239 smart00854, PGA_cap, Bacterial capsule synthesis protei 2e-05
cd07381239 cd07381, MPP_CapA, CapA and related proteins, metalloph 2e-04
>gnl|CDD|31878 COG1692, COG1692, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|161802 TIGR00282, TIGR00282, metallophosphoesterase, MG_246/BB_0505 family Back     alignment and domain information
>gnl|CDD|163625 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain Back     alignment and domain information
>gnl|CDD|143917 pfam00149, Metallophos, Calcineurin-like phosphoesterase Back     alignment and domain information
>gnl|CDD|150300 pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>gnl|CDD|129087 smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>gnl|CDD|163624 cd07381, MPP_CapA, CapA and related proteins, metallophosphatase domain Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
COG1692266 Calcineurin-like phosphoesterase [General function pred 100.0
TIGR00282272 TIGR00282 conserved hypothetical protein TIGR00282; Int 100.0
PRK09558 551 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase p 99.11
pfam09587237 PGA_cap Bacterial capsule synthesis protein PGA_cap. Th 99.09
smart00854239 PGA_cap Bacterial capsule synthesis protein PGA_cap. Th 99.09
PRK09419 1260 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiestera 98.66
pfam00149186 Metallophos Calcineurin-like phosphoesterase. This fami 98.24
PRK09419 1260 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiestera 97.54
TIGR01530 550 nadN NAD nucleotidase; InterPro: IPR006420 This family 96.47
PRK11340270 phosphodiesterase YaeI; Provisional 90.02
COG0737 517 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and 98.7
PRK09418 780 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiestera 97.18
KOG4419 602 consensus 97.01
PRK09420 578 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 97.51
PRK11907 810 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiestera 95.66
PRK02083253 imidazole glycerol phosphate synthase subunit HisF; Pro 93.2
TIGR03572232 WbuZ glycosyl amidation-associated protein WbuZ. This c 91.01
PRK02621254 consensus 90.87
PRK05581220 ribulose-phosphate 3-epimerase; Validated 92.67
PRK08091235 ribulose-phosphate 3-epimerase; Validated 92.0
PRK08005210 ribulose-phosphate 3-epimerase; Validated 90.58
PRK09722227 allulose-6-phosphate 3-epimerase; Provisional 90.01
>COG1692 Calcineurin-like phosphoesterase [General function prediction only] Back     alignment and domain information
>TIGR00282 TIGR00282 conserved hypothetical protein TIGR00282; InterPro: IPR005235 This family of conserved hypothetical proteins has no known function Back     alignment and domain information
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed Back     alignment and domain information
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>pfam00149 Metallophos Calcineurin-like phosphoesterase Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420 This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>KOG4419 consensus Back     alignment and domain information
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed Back     alignment and domain information
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional Back     alignment and domain information
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ Back     alignment and domain information
>PRK02621 consensus Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK08005 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
1t70_A255 Crystal Structure Of A Novel Phosphatase From Deino 1e-69
2z06_A252 Crystal Structure Of Uncharacterized Conserved Prot 2e-69
1t71_A281 Crystal Structure Of A Novel Phosphatase Mycoplasma 7e-64
2cv9_A252 Crystal Structure Of A Hypothetical Protein From Th 1e-63
gi|58176742|pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus Radiodurans Length = 255 Back     alignment and structure 
 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/263 (40%), Positives = 142/263 (53%), Gaps = 13/263 (4%)

Query: 1   MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
           MR+LF+GD+ G+ GR ++   LP +   F  DFVI N ENSAGGFG+        +E G 
Sbjct: 1   MRVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGA 58

Query: 61  DVITTGNHVWDKREALVFSQRHCK-FLRPANYP-PNTPGNGSGLYCAKNGSNVLVANIMG 118
             +T GNH W  ++            +RP NY  P TPG G   +   NG  + V N++G
Sbjct: 59  GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFD-VNGEKLTVVNLLG 117

Query: 119 RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGT 178
           RVFM   +D+PFRT D +L    L      +  DFHAE TSEK+     +  R + V+GT
Sbjct: 118 RVFME-AVDNPFRTMDALLERDDLGT----VFVDFHAEATSEKEAMGWHLAGRVAAVIGT 172

Query: 179 HTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPAT 238
           HTH+PTAD +IL GGT Y TD G  G ++S IG   E P+ RF+T+ P +R+ +A G A 
Sbjct: 173 HTHVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERP-HRYGVAEGRAE 231

Query: 239 LCGICAEISDVTGLAEKIAPIRI 261
           L G+        G A      R 
Sbjct: 232 LNGVALHF--EGGKATAAERYRF 252
gi|160286297|pdb|2Z06|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Thermus Thermophilus Length = 252 Back     alignment and structure
gi|58176750|pdb|1T71|A Chain A, Crystal Structure Of A Novel Phosphatase Mycoplasma Pneumoniaefrom Length = 281 Back     alignment and structure
>gi|83754884|pdb|2CV9|A Chain A, Crystal Structure Of A Hypothetical Protein From Thermus Thermophilus Hb8 Length = 252 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
1t71_A281 Phosphatase, conserved; crystal, X-RAY crystallography, 1e-80
2z06_A252 Putative uncharacterized protein TTHA0625; metal bindin 7e-78
1t70_A255 Phosphatase; crystal, X-RAY crystallography, structural 2e-77
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Length = 281 Back     alignment and structure
 Score =  294 bits (754), Expect = 1e-80
 Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 10/266 (3%)

Query: 1   MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
           ++ +FLGD+ GK GR+I+   L +L   +Q D VI N EN+  G G++ K +  + E G+
Sbjct: 5   IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64

Query: 61  DVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----TPGNGSGLYCAKNGSNVLVANI 116
           + IT GNH W ++  L         +RP N   +      G GS ++        +   +
Sbjct: 65  NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124

Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
              V +     +PF+   +++     K   D+ + DFHAETTSEK  F    D   + + 
Sbjct: 125 GTSVPLPFKTTNPFKVLKELIL----KRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180

Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIANG 235
           GTHTH+P+AD +I   G+ YITD+GMCG  + S IG + E+ I  F        F ++  
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239

Query: 236 PATLCGICAEISDVTGLAEKIAPIRI 261
            A L G+  E+   T    K   IRI
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRI 265
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} SCOP: d.159.1.10 PDB: 2cv9_A Length = 252 Back     alignment and structure
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9 Length = 255 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
1t71_A281 Phosphatase, conserved; crystal, X-RAY crystallography, 100.0
1t70_A255 Phosphatase; crystal, X-RAY crystallography, structural 100.0
2z06_A252 Putative uncharacterized protein TTHA0625; metal bindin 100.0
3ive_A 509 Nucleotidase; structural genomics, PSI-2, protein struc 98.91
2z1a_A 552 5'-nucleotidase; metal-binding, nucleotide-binding, hyd 98.9
3gve_A341 YFKN protein; alpha-beta-BETA-alpha sandwich, structura 98.86
1hp1_A 516 5'-nucleotidase; metallophosphatase, dinuclear, metallo 98.85
3c9f_A 557 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protei 98.8
3jyf_A339 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleo 98.65
2wdc_A 562 SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydr 98.61
1uf3_A228 Hypothetical protein TT1561; metallo-dependent phosphat 96.62
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nucleas 96.49
1ute_A313 Protein (II purple acid phosphatase); tartrate resistan 95.72
2q8u_A336 Exonuclease, putative; structural genomics, joint cente 94.78
1xzw_A426 Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2 94.52
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metallohydr 90.61
2kkn_A178 Uncharacterized protein; protein phosphatase 2A homolog 90.24
1ii7_A333 MRE11 nuclease; RAD50, DNA double-strand break repair, 94.63
1su1_A208 Hypothetical protein YFCE; structural genomics, phospho 94.31
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, unkn 93.35
2qjc_A262 Diadenosine tetraphosphatase, putative; putative diaden 92.99
2nxf_A322 Putative dimetal phosphatase; dinuclear metal center ph 92.19
2fli_A220 Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D 92.34
2iw0_A254 Chitin deacetylase; hydrolase, chitin DE-N-acetylase, f 90.22
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Back     alignment and structure
Probab=100.00  E-value=0  Score=809.52  Aligned_cols=264  Identities=34%  Similarity=0.598  Sum_probs=253.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      |||||||||||+|||++|+++||+||++|++|||||||||||+|+|||+++|++|+++||||||+|||+|||||++++|+
T Consensus         5 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~iDfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   84 (281)
T 1t71_A            5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVI   84 (281)
T ss_dssp             CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHHHT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH
T ss_conf             36999980688889999999809999982899999898536789698999999999719989924721025635799885


Q ss_pred             HCCCEEEECCCCC----CCCCCCEEEEECCCCCEEEEEEEEHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             1893897500798----8875407999848992899999600005883-3259899999998634136899889996257
Q gi|254780659|r   81 RHCKFLRPANYPP----NTPGNGSGLYCAKNGSNVLVANIMGRVFMNP-LLDDPFRTADKILATCPLKEQADVIVFDFHA  155 (274)
Q Consensus        81 ~~~~ilRP~N~p~----~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa  155 (274)
                      +++|||||+|||+    ++||+||.+++.. +.+++|+|||||+||.| .++|||+.++.++.+    .++++|||||||
T Consensus        85 ~~~~ilRP~N~p~~~p~~~pG~G~~i~~~~-~~~i~Vinl~Gr~fm~~~~~~~pf~~~~~~~~~----~~~~~iiVDfHA  159 (281)
T 1t71_A           85 NKKDLVRPLNLDTSFAFHNLGQGSLVFEFN-KAKIRITNLLGTSVPLPFKTTNPFKVLKELILK----RDCDLHIVDFHA  159 (281)
T ss_dssp             TCTTEECBSCBCTTSTTTTSSBSEEEEECS-SCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTT----CCCSEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCC
T ss_conf             266431045455446788888757999516-742542101174356875456356777788753----479879997355


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             62289999997608957799806976246545640367289840560137-12103547467898885168865411157
Q gi|254780659|r  156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIAN  234 (274)
Q Consensus       156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~~~i~rf~t~~p~~r~~~a~  234 (274)
                      ||||||+|||||||||||||+||||||||||+||||+|||||||+||||| |||||||+++++|+||++++|. ||++|+
T Consensus       160 EATSEK~Amg~~lDGrVsaVvGTHTHV~TaD~rILp~GTAyiTDvGMtG~~~dSVIG~~~e~~i~rf~t~~p~-rf~~a~  238 (281)
T 1t71_A          160 ETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSK  238 (281)
T ss_dssp             SCHHHHHHHHHHHTTTSSEEEEESSSSCCTTCEECTTSCEEESCCCEEBCCTTSBTTBCHHHHHHHHTTCCCC-CCCBCC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCC
T ss_conf             1178999999873698789985675622676647589819981486655886753254717899999718998-866689


Q ss_pred             CCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             8719999999984799867467899876831657875349
Q gi|254780659|r  235 GPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT  274 (274)
Q Consensus       235 g~~~l~gv~ieid~~tG~a~~I~ri~igg~L~e~~p~~~~  274 (274)
                      ++++|||++||+|++||||.+|+||||    .|..|.+|+
T Consensus       239 g~~~l~gv~i~id~~tgka~~Ieri~i----~ed~p~~~~  274 (281)
T 1t71_A          239 CGAQLNGVFFEVDVNTKKVIKTEAIRI----VEDDPRYLK  274 (281)
T ss_dssp             SCEEEEEEEEECCTTTCCCCEEEEEEE----EECCGGGTT
T ss_pred             CCCEEEEEEEEEECCCCCEEEEEEEEE----CCCCHHHHH
T ss_conf             986899999998889897678999996----167704888
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9 Back     alignment and structure
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} SCOP: d.159.1.10 PDB: 2cv9_A Back     alignment and structure
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Back     alignment and structure
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus HB8} SCOP: d.114.1.1 d.159.1.2 Back     alignment and structure
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Back     alignment and structure
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A Back     alignment and structure
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP: d.114.1.1 d.159.1.2 Back     alignment and structure
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} Back     alignment and structure
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Back     alignment and structure
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Back     alignment and structure
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6 Back     alignment and structure
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Back     alignment and structure
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
d1t71a_281 d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma 1e-81
d2z06a1252 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {The 6e-79
d1t70a_255 d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus 3e-78
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 281 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

 Score =  296 bits (759), Expect = 1e-81
 Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 14/277 (5%)

Query: 1   MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
           ++ +FLGD+ GK GR+I+   L +L   +Q D VI N EN+  G G++ K +  + E G+
Sbjct: 5   IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64

Query: 61  DVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----TPGNGSGLYCAKNGSNVLVANI 116
           + IT GNH W ++  L         +RP N   +      G GS ++        +   +
Sbjct: 65  NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124

Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
              V +     +PF+   +++     K   D+ + DFHAETTSEK  F    D   + + 
Sbjct: 125 GTSVPLPFKTTNPFKVLKELIL----KRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180

Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIANG 235
           GTHTH+P+AD +I   G+ YITD+GMCG  + S IG + E+ I  F        F ++  
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239

Query: 236 PATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDF 272
            A L G+  E+   T    K   IRI     E  P +
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRI----VEDDPRY 272
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]} Length = 252 Back     information, alignment and structure
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]} Length = 255 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
d1t71a_281 Hypothetical protein MPN349 {Mycoplasma pneumoniae [Tax 100.0
d2z06a1252 Hypothetical protein TTHA0625 {Thermus thermophilus [Ta 100.0
d1t70a_255 Putative phosphatase DR1281 {Deinococcus radiodurans [T 100.0
d1usha2337 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal 98.96
d2z1aa2302 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal 98.88
d3c9fa2322 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal 98.77
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus jannas 97.02
d2qfra2312 Plant purple acid phosphatase, catalytic domain {Kidney 96.76
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus [TaxI 95.55
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycobacteri 94.84
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [ 94.3
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} 95.24
d1ii7a_333 Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 93.34
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=100.00  E-value=0  Score=808.25  Aligned_cols=263  Identities=35%  Similarity=0.604  Sum_probs=250.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      |||||||||||+|||++|+++||+||++|++|||||||||||+|+|||+++|++|+++||||||+|||+|||||+++||+
T Consensus         5 MkILfiGDIvG~~GR~~v~~~Lp~Lr~~~~iDfVIaNgENaa~G~Git~k~~~eL~~~GvDvIT~GNH~wd~kei~~~i~   84 (281)
T d1t71a_           5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVI   84 (281)
T ss_dssp             CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHHHT
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHCHHHHHHHH
T ss_conf             46999971688889999999839999971999999887657899398999999999707867975724553314278776


Q ss_pred             HCCCEEEECCCCC----CCCCCCEEEEECCCCCEEEEEEEEHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             1893897500798----8875407999848992899999600005883-3259899999998634136899889996257
Q gi|254780659|r   81 RHCKFLRPANYPP----NTPGNGSGLYCAKNGSNVLVANIMGRVFMNP-LLDDPFRTADKILATCPLKEQADVIVFDFHA  155 (274)
Q Consensus        81 ~~~~ilRP~N~p~----~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa  155 (274)
                      +++|||||+|||+    ++||+||.+++. ++.|++|+|||||+||.| .++|||..+++++.+    .++|+|||||||
T Consensus        85 ~~~~llRP~N~p~~~p~~~pG~G~~i~~~-~~~~i~Vinl~G~~fm~~~~~~~pf~~~~~~~~~----~~~d~i~VDfHa  159 (281)
T d1t71a_          85 NKKDLVRPLNLDTSFAFHNLGQGSLVFEF-NKAKIRITNLLGTSVPLPFKTTNPFKVLKELILK----RDCDLHIVDFHA  159 (281)
T ss_dssp             TCTTEECBSCBCTTSTTTTSSBSEEEEEC-SSCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTT----CCCSEEEEEEEC
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC----CCCCEEEEEECC
T ss_conf             13433115544333567999742899971-6543320122164224444563788777776404----678769998035


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             62289999997608957799806976246545640367289840560137-12103547467898885168865411157
Q gi|254780659|r  156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIAN  234 (274)
Q Consensus       156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~~~i~rf~t~~p~~r~~~a~  234 (274)
                      ||||||+|||||||||||||+||||||||||+||||+|||||||+||||| |||||||++|.+|+||++++|. ||++|+
T Consensus       160 EATSEK~A~g~~lDGrvsaVvGTHTHV~TaD~rILp~GTAyiTDvGMtG~~ydSVIG~~~e~~i~rf~t~~p~-rf~~a~  238 (281)
T d1t71a_         160 ETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSK  238 (281)
T ss_dssp             SCHHHHHHHHHHHTTTSSEEEEESSSSCCTTCEECTTSCEEESCCCEEBCCTTSBTTBCHHHHHHHHTTCCCC-CCCBCC
T ss_pred             CHHHHHHHHEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCC
T ss_conf             1066552330440796899982575441576401267728983575544766742044707899999718997-766789


Q ss_pred             CCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf             871999999998479986746789987683165787534
Q gi|254780659|r  235 GPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFW  273 (274)
Q Consensus       235 g~~~l~gv~ieid~~tG~a~~I~ri~igg~L~e~~p~~~  273 (274)
                      ++++|||+++|+|++||+|++|+||||    .|..|.|.
T Consensus       239 g~~~l~gv~i~id~~tg~a~~I~ri~i----~ed~p~~l  273 (281)
T d1t71a_         239 CGAQLNGVFFEVDVNTKKVIKTEAIRI----VEDDPRYL  273 (281)
T ss_dssp             SCEEEEEEEEECCTTTCCCCEEEEEEE----EECCGGGT
T ss_pred             CCCEEEEEEEEEECCCCCEEEEEEEEE----ECCCHHHH
T ss_conf             987999999998889897368999997----05773478
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 274 hypothetical protein CLIBASIA_02730 [Candidatus Li
1t71_A_281 (A:) Phosphatase, conserved; crystal, X-RAY crysta 2e-38
2z06_A_252 (A:) Putative uncharacterized protein TTHA0625; me 9e-38
1t70_A_255 (A:) Phosphatase; crystal, X-RAY crystallography, 1e-36
>1t71_A (A:) Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129}Length = 281 Back     alignment and structure
 Score =  153 bits (387), Expect = 2e-38
 Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 1   MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
           ++ +FLGD+ GK GR+I+   L +L   +Q D VI N EN+  G G++ K +  + E G+
Sbjct: 5   IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64

Query: 61  DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSG---LYCAKNGSNVLVANIM 117
           + IT GNH W ++  L         +RP N   +   +  G   L    N + + + N++
Sbjct: 65  NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124

Query: 118 GRVFMNPL-LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
           G     P    +PF+   +++         D+ + DFHAETTSEK  F    D   + + 
Sbjct: 125 GTSVPLPFKTTNPFKVLKELILKRD----CDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180

Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEEPINRFITQIPRNRFVIANG 235
           GTHTH+P+AD +I   G+ YITD+GMCG    S IG + E+ I  F        F ++  
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239

Query: 236 PATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFW 273
            A L G+  E+   T    K   IRI           +
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDY 277
>2z06_A (A:) Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8}Length = 252 Back     alignment and structure
>1t70_A (A:) Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1}Length = 255 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target274 hypothetical protein CLIBASIA_02730 [Candidatus Liberib
1t70_A_255 Phosphatase; crystal, X-RAY crystallography, struc 99.97
1t71_A_281 Phosphatase, conserved; crystal, X-RAY crystallogr 99.97
2z06_A_252 Putative uncharacterized protein TTHA0625; metal b 99.97
3ib7_A_23-284262 ICC protein; metallophosphoesterase, alpha-beta fo 97.19
1ute_A_313 Protein (II purple acid phosphatase); tartrate res 96.33
1hp1_A_1-327327 5'-nucleotidase; metallophosphatase, dinuclear, me 98.99
3ive_A_1-307307 Nucleotidase; structural genomics, PSI-2, protein 98.99
2z1a_A_1-327327 5'-nucleotidase; metal-binding, nucleotide-binding 98.89
3c9f_A_1-326326 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p 98.81
3jyf_A_339 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n 98.78
3gve_A_341 YFKN protein; alpha-beta-BETA-alpha sandwich, stru 98.68
2wdc_A_1-358358 SOXB, sulfur oxidation protein SOXB; sulfur-sulfur 98.35
1ii7_A_333 MRE11 nuclease; RAD50, DNA double-strand break rep 97.84
2q8u_A_1-281281 Exonuclease, putative; TM1635, structural genomics 96.92
1xzw_A_122-426305 Purple acid phosphatase; hydrolase; HET: NAG FUC M 96.58
1uf3_A_228 Hypothetical protein TT1561; metallo-dependent pho 96.3
2qfp_A_115-424310 Purple acid phosphatase; binuclear, Fe-Zn, hydrola 95.73
3d03_A_1-98_224-274149 Phosphohydrolase; glycerophosphodiesterase, metall 94.47
1s3l_A_190 Hypothetical protein MJ0936; phosphodiesterase, nu 91.46
2nxf_A_1-117_290-322150 Putative dimetal phosphatase; dinuclear metal cent 91.12
>1t70_A (A:) Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} Back     alignment and structure
Probab=99.97  E-value=8.9e-29  Score=206.95  Aligned_cols=250  Identities=40%  Similarity=0.699  Sum_probs=233.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      |+||+++|+.|+.|...+...+.++|++.  |.+++|+|+.-.|.++....++.|.++|.|+.|.|||-||..++..+++
T Consensus         1 l~il~~~Dih~~~g~~~~~~~i~~~~~~~--d~l~v~~GD~~~g~~~~~~~~~~l~~~g~d~~~~GNHe~d~g~l~~~l~   78 (255)
T 1t70_A            1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGAGCLTLGNHAWHHKDIYPMLS   78 (255)
T ss_dssp             CEEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHTCSEEECCTTTTSSTTHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHHC--CEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHCHHHHHHHH
T ss_conf             92999960789889999998708878609--8999998667888589999999999757867973605542423689986


Q ss_pred             HCCCEEEECCC--CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             18938975007--9888754079998489928999996000058833259899999998634136899889996257622
Q gi|254780659|r   81 RHCKFLRPANY--PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT  158 (274)
Q Consensus        81 ~~~~ilRP~N~--p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT  158 (274)
                      +.++-...+|.  ....+...|.+++ .+|.|++++.+.+..+..+ .+.+.+.+++++++    .++|.+++-+|.-..
T Consensus        79 ~~~~~~l~~n~~~~~~~~~~~~~i~~-~~g~ki~~~g~~~~~~~~~-~~~~~~~~~~~~~~----~~~D~vI~l~H~g~~  152 (255)
T 1t70_A           79 EDTYPIVRPLNYADPGTPGVGWRTFD-VNGEKLTVVNLLGRVFMEA-VDNPFRTMDALLER----DDLGTVFVDFHAEAT  152 (255)
T ss_dssp             TTCSCEECCSCCCCTTCSSCSEEEEE-CSSSEEEEEEEECCTTSCC-CSCHHHHHHHHTTC----SSCCEEEEEEECSCH
T ss_pred             HCCCCCCCHHCCCCCCCCCCEEEEEE-ECCCCEEEEEECCEECCCC-CCCHHHHHHHHHHH----CCCCEEEEECCCHHH
T ss_conf             30312363210777789985089995-0656399999705442676-66879999999864----568849999034048


Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf             89999997608957799806976246545640367289840560137121035474678988851688654111578719
Q gi|254780659|r  159 SEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPAT  238 (274)
Q Consensus       159 SEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~  238 (274)
                      .+..++..+++..|.+|+|.|||+++..+.+.+++..|.+..|..|.+.+.++...+....+++..+.. .|........
T Consensus       153 ~~~~~~~~~~~~gvDlilggH~H~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~  231 (255)
T 1t70_A          153 SEKEAMGWHLAGRVAAVIGTHTHVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAE  231 (255)
T ss_dssp             HHHHHHHHHHTTSSSEEEEESSCSCBSCCEEETTTEEEESCCCCBEESSSBTTBCSHHHHHHHHHCSCC-CCCBCCSCEE
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCC-CCCCCCCCCE
T ss_conf             778888842348679998568553255326737785898248552053551376738899999718998-8756799879


Q ss_pred             EEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             99999998479986746789987
Q gi|254780659|r  239 LCGICAEISDVTGLAEKIAPIRI  261 (274)
Q Consensus       239 l~gv~ieid~~tG~a~~I~ri~i  261 (274)
                      ++++.+++|+.  .+..++++|.
T Consensus       232 ~~~~~i~~d~~--~~~~~~~~~~  252 (255)
T 1t70_A          232 LNGVALHFEGG--KATAAERYRF  252 (255)
T ss_dssp             EEEEEEEEETT--EEEEEEEEEE
T ss_pred             EEEEEEEECCC--CEEEEEEEEE
T ss_conf             99999997799--7898899994
>1t71_A (A:) Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} Back     alignment and structure
>2z06_A (A:) Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} Back     alignment and structure
>3ib7_A (A:23-284) ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>1ute_A (A:) Protein (II purple acid phosphatase); tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} Back     alignment and structure
>1hp1_A (A:1-327) 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} Back     alignment and structure
>3ive_A (A:1-307) Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Back     alignment and structure
>2z1a_A (A:1-327) 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus HB8} Back     alignment and structure
>3c9f_A (A:1-326) 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} Back     alignment and structure
>3jyf_A (A:) 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3gve_A (A:) YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Back     alignment and structure
>2wdc_A (A:1-358) SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Back     alignment and structure
>1ii7_A (A:) MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} Back     alignment and structure
>2q8u_A (A:1-281) Exonuclease, putative; TM1635, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.20A {Thermotoga maritima MSB8} Back     alignment and structure
>1xzw_A (A:122-426) Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} Back     alignment and structure
>1uf3_A (A:) Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} Back     alignment and structure
>2qfp_A (A:115-424) Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} Back     alignment and structure
>3d03_A (A:1-98,A:224-274) Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} Back     alignment and structure
>1s3l_A (A:) Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nxf_A (A:1-117,A:290-322) Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} Back     alignment and structure