254780687
flagellar C-ring protein
GeneID in NCBI database: | 8209691 | Locus tag: | CLIBASIA_02870 |
Protein GI in NCBI database: | 254780687 | Protein Accession: | YP_003065100.1 |
Gene range: | -(580068, 581024) | Protein Length: | 318aa |
Gene description: | flagellar C-ring protein | ||
COG prediction: | none | ||
KEGG prediction: | fliM; flagellar C-ring protein; K02416 flagellar motor switch protein FliM | ||
SEED prediction: | Flagellar motor switch protein FliM | ||
Pathway involved in KEGG: | Bacterial chemotaxis [PATH:las02030]
Flagellar assembly [PATH:las02040] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | |||
315121854 | 318 | flagellar motor switch protein fliM [Candidatus Liberib | 1 | 1e-114 | |
241203098 | 316 | surface presentation of antigens (SPOA) protein [Rhizob | 1 | 2e-53 | |
116250474 | 316 | flagella motor switch protein [Rhizobium leguminosarum | 1 | 9e-53 | |
327193028 | 314 | flagellar C-ring motor switch protein [Rhizobium etli C | 1 | 1e-52 | |
222084857 | 314 | flagellar C-ring protein [Agrobacterium radiobacter K84 | 1 | 2e-52 | |
190890355 | 316 | flagellar C-ring motor switch protein [Rhizobium etli C | 1 | 3e-52 | |
222147563 | 319 | flagellar motor switch protein [Agrobacterium vitis S4] | 1 | 3e-52 | |
86356304 | 316 | flagellar C-ring protein [Rhizobium etli CFN 42] Length | 1 | 8e-52 | |
209547920 | 316 | hypothetical protein Rleg2_0312 [Rhizobium leguminosaru | 1 | 3e-51 | |
325291948 | 319 | Flagellar motor switch protein [Agrobacterium sp. H13-3 | 1 | 2e-45 |
>gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 | Back alignment and organism information |
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Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 254/317 (80%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHK 317 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHK 317 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 | Back alignment and organism information |
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>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 | Back alignment and organism information |
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>gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 | Back alignment and organism information |
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>gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 | Back alignment and organism information |
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>gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 | Back alignment and organism information |
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>gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 | Back alignment and organism information |
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>gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 | Back alignment and organism information |
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>gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 | Back alignment and organism information |
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>gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
PRK06666 | 337 | PRK06666, fliM, flagellar motor switch protein FliM; Va | 3e-11 | |
TIGR01397 | 320 | TIGR01397, fliM_switch, flagellar motor switch protein | 9e-10 | |
pfam01052 | 77 | pfam01052, SpoA, Surface presentation of antigens (SPOA | 9e-08 | |
COG1886 | 136 | COG1886, FliN, Flagellar motor switch/type III secretor | 1e-04 | |
COG1868 | 332 | COG1868, FliM, Flagellar motor switch protein [Cell mot | 1e-32 |
>gnl|CDD|180651 PRK06666, fliM, flagellar motor switch protein FliM; Validated | Back alignment and domain information |
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>gnl|CDD|130464 TIGR01397, fliM_switch, flagellar motor switch protein FliM | Back alignment and domain information |
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>gnl|CDD|144589 pfam01052, SpoA, Surface presentation of antigens (SPOA) | Back alignment and domain information |
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>gnl|CDD|32070 COG1886, FliN, Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
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>gnl|CDD|32053 COG1868, FliM, Flagellar motor switch protein [Cell motility and secretion] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
PRK12795 | 378 | fliM flagellar motor switch protein FliM; Reviewed | 100.0 | |
PRK06666 | 336 | fliM flagellar motor switch protein FliM; Validated | 100.0 | |
COG1868 | 332 | FliM Flagellar motor switch protein [Cell motility and | 100.0 | |
PRK08119 | 390 | flagellar motor switch protein; Validated | 100.0 | |
TIGR01397 | 328 | fliM_switch flagellar motor switch protein FliM; InterP | 100.0 | |
PRK06782 | 547 | flagellar motor switch protein; Reviewed | 99.97 | |
pfam02154 | 192 | FliM Flagellar motor switch protein FliM. | 100.0 | |
PRK06782 | 547 | flagellar motor switch protein; Reviewed | 99.18 | |
PRK08432 | 281 | flagellar motor switch protein FliY; Validated | 99.95 | |
PRK05933 | 371 | type III secretion system protein; Validated | 99.23 | |
PRK08983 | 126 | fliN flagellar motor switch protein; Validated | 99.74 | |
PRK07963 | 137 | fliN flagellar motor switch protein FliN; Validated | 99.73 | |
TIGR02480 | 77 | fliN flagellar motor switch protein FliN; InterPro: IPR | 99.7 | |
pfam01052 | 77 | SpoA Surface presentation of antigens (SPOA). This fami | 99.7 | |
PRK05698 | 155 | fliN flagellar motor switch protein; Validated | 99.69 | |
PRK08433 | 111 | flagellar motor switch protein; Validated | 99.68 | |
PRK08916 | 114 | flagellar motor switch protein; Reviewed | 99.66 | |
PRK06033 | 87 | hypothetical protein; Validated | 99.63 | |
PRK06788 | 119 | flagellar motor switch protein; Validated | 99.59 | |
COG1886 | 136 | FliN Flagellar motor switch/type III secretory pathway | 99.5 | |
TIGR02551 | 326 | SpaO_YscQ type III secretion apparatus protein, YscQ/Hr | 99.26 | |
PRK06933 | 307 | type III secretion system protein; Validated | 98.96 | |
PRK08158 | 303 | surface presentation of antigens protein SpaO; Validate | 98.9 | |
PRK08035 | 326 | type III secretion system protein; Validated | 98.17 | |
PRK06933 | 307 | type III secretion system protein; Validated | 96.76 | |
PRK05933 | 371 | type III secretion system protein; Validated | 96.15 | |
PRK06789 | 61 | flagellar motor switch protein; Validated | 95.8 | |
COG1776 | 203 | CheC Chemotaxis protein CheC, inhibitor of MCP methylat | 98.65 | |
PRK08158 | 303 | surface presentation of antigens protein SpaO; Validate | 94.34 | |
TIGR02551 | 326 | SpaO_YscQ type III secretion apparatus protein, YscQ/Hr | 92.73 |
>PRK12795 fliM flagellar motor switch protein FliM; Reviewed | Back alignment and domain information |
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>PRK06666 fliM flagellar motor switch protein FliM; Validated | Back alignment and domain information |
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>COG1868 FliM Flagellar motor switch protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08119 flagellar motor switch protein; Validated | Back alignment and domain information |
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>TIGR01397 fliM_switch flagellar motor switch protein FliM; InterPro: IPR001689 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour | Back alignment and domain information |
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>PRK06782 flagellar motor switch protein; Reviewed | Back alignment and domain information |
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>pfam02154 FliM Flagellar motor switch protein FliM | Back alignment and domain information |
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>PRK06782 flagellar motor switch protein; Reviewed | Back alignment and domain information |
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>PRK08432 flagellar motor switch protein FliY; Validated | Back alignment and domain information |
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>PRK05933 type III secretion system protein; Validated | Back alignment and domain information |
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>PRK08983 fliN flagellar motor switch protein; Validated | Back alignment and domain information |
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>PRK07963 fliN flagellar motor switch protein FliN; Validated | Back alignment and domain information |
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>TIGR02480 fliN flagellar motor switch protein FliN; InterPro: IPR012826 Proteins that consist largely of this domain can be designated flagellar motor switch proteins: FliN | Back alignment and domain information |
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>pfam01052 SpoA Surface presentation of antigens (SPOA) | Back alignment and domain information |
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>PRK05698 fliN flagellar motor switch protein; Validated | Back alignment and domain information |
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>PRK08433 flagellar motor switch protein; Validated | Back alignment and domain information |
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>PRK08916 flagellar motor switch protein; Reviewed | Back alignment and domain information |
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>PRK06033 hypothetical protein; Validated | Back alignment and domain information |
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>PRK06788 flagellar motor switch protein; Validated | Back alignment and domain information |
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>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
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>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions | Back alignment and domain information |
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>PRK06933 type III secretion system protein; Validated | Back alignment and domain information |
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>PRK08158 surface presentation of antigens protein SpaO; Validated | Back alignment and domain information |
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>PRK08035 type III secretion system protein; Validated | Back alignment and domain information |
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>PRK06933 type III secretion system protein; Validated | Back alignment and domain information |
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>PRK05933 type III secretion system protein; Validated | Back alignment and domain information |
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>PRK06789 flagellar motor switch protein; Validated | Back alignment and domain information |
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>COG1776 CheC Chemotaxis protein CheC, inhibitor of MCP methylation [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
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>PRK08158 surface presentation of antigens protein SpaO; Validated | Back alignment and domain information |
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>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
2hp7_A | 183 | Structure Of Flim Provides Insight Into Assembly Of | 2e-30 | |
1yab_A | 87 | Structure Of T. Maritima Flin Flagellar Rotor Prote | 5e-11 | |
1o6a_A | 96 | Crystal Structure Of A C-Terminal Fragment Of The P | 6e-10 |
>gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The Switch Complex In The Bacterial Flagella Motor Length = 183 | Back alignment and structure |
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 6/185 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + L ++ VD+ S + I S + Sbjct: 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFT 63 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + +L T+L+ ++G E P NR + +E + ++ + + +L Sbjct: 64 GDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLA 120 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 Q S Q P++E+ + NE V + +++ S + P L Sbjct: 121 QAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFSLLE 178 Query: 208 KTTLI 212 Sbjct: 179 PLLEK 183 |
>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein Length = 87 | Back alignment and structure |
>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution Length = 96 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
1o6a_A | 96 | Putative flagelar motor switch protein FLIN; TM0680A, C | 3e-08 | |
1o9y_A | 84 | HRCQ2; secretory protein, HRP, type III secretion syste | 8e-06 |
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A Length = 96 | Back alignment and structure |
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Score = 54.7 bits (132), Expect = 3e-08 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S+ + D ++ + + + + + TLK V+ + G +I Sbjct: 1 SETRKTEVPSDKLELL----LDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPV 56 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLK 312 + NGK I E+ + +N+ +RIT+ ++ + + L Sbjct: 57 DILVNGKLIARGEVVVIDENFGVRITEIVSPKERLELLN 95 |
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1 Length = 84 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
2hp7_A | 183 | Flagellar motor switch protein FLIM; bacterial chemotax | 100.0 | |
1xkr_A | 206 | Chemotaxis protein CHEC; signal transduction, protein p | 98.82 | |
3hm4_A | 156 | Chemotaxis protein CHEX; YP_386777.1, structural genomi | 97.15 | |
3hzh_B | 172 | Chemotaxis operon protein (CHEX); phosphatase, complex, | 97.03 | |
3h2d_A | 155 | CHEC-like superfamily protein; NP_719446.1, structural | 96.83 | |
1o6a_A | 96 | Putative flagelar motor switch protein FLIN; TM0680A, C | 99.73 | |
1o9y_A | 84 | HRCQ2; secretory protein, HRP, type III secretion syste | 99.64 | |
1squ_A | 155 | CHEX protein; alpha-beta sandwich, structural genomics, | 95.46 |
>2hp7_A Flagellar motor switch protein FLIM; bacterial chemotaxis, flagellar switch complex, signaling protein; 2.00A {Thermotoga maritima} | Back alignment and structure |
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Probab=100.00 E-value=1e-35 Score=251.93 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=170.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999 Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318) Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318) ++...++++.++|+|+|.++..|++++|..++|++ ++++.+|+||++++|.|+++++++++||+|++++.+|++++|++ T Consensus 5 ske~l~~L~~I~e~far~~~~~l~~~lr~~~~v~~-~v~~~~~~ef~~~l~~p~~l~i~~~~pl~g~~ll~i~~~l~~~~ 83 (183) T 2hp7_A 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTM 83 (183) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE-EEEEEEHHHHHHHSCSSCEEEEEEETTCSSCEEEEECHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEEHHHHHHHCCCCEEEEEEEECCCCCCEEEEECHHHHHHH T ss_conf 35466799999999999999999998688847999-46899899999658887289998604658807999886999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988 Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318) Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318) ||++|||.|... ++|+||+||.++++++++.++++|.++|+++.++++.+...++ |+++++++.|+|.+++++|+ T Consensus 84 vD~l~GG~g~~~---~~R~lT~iE~~i~~~i~~~~~~~l~~aw~~~~~~~~~~~~~e~--np~~~~i~~~~e~vv~~~f~ 158 (183) T 2hp7_A 84 LDIIMGGPGENP---PNRPPTEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 158 (183) T ss_dssp HHHHHTCC-------CCSCCCHHHHHHHHHHHHHHHHHHHHHTHHHHCCCEEEEEEES--CGGGCCSSCTTSEEEEEEEE T ss_pred HHHHCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CHHHHCCCCCCCEEEEEEEE T ss_conf 999748999988---9987868889999999999999999998533137740334233--86765638999859999999 Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHH Q ss_conf 6667813799998504775256775 Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLI 212 (318) Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~ 212 (318) +++|+.+|.+++|+||++++|++++ T Consensus 159 v~~g~~~g~~~i~iP~~~Lepi~~k 183 (183) T 2hp7_A 159 VSWGEFTSFINVCWPFSLLEPLLEK 183 (183) T ss_dssp EEETTEEEEEEEEEEHHHHHHHHHC T ss_pred EEECCCCEEEEEEEHHHHHHHHCCC T ss_conf 9989964299999638841433069 |
>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 2f9z_A | Back alignment and structure |
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>3hm4_A Chemotaxis protein CHEX; YP_386777.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.30A {Desulfovibrio desulfuricans subsp} PDB: 3h4y_A* | Back alignment and structure |
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>3hzh_B Chemotaxis operon protein (CHEX); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
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>3h2d_A CHEC-like superfamily protein; NP_719446.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Shewanella oneidensis mr-1} PDB: 3iic_A* | Back alignment and structure |
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>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A | Back alignment and structure |
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>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1 | Back alignment and structure |
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>1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 1xko_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
318 | flagellar C-ring protein [Candidatus Liberibacter asiat | |||
d1o6aa_ | 87 | b.139.1.1 (A:) Putative flagelar motor switch protein F | 2e-08 | |
d1o9ya_ | 71 | b.139.1.1 (A:) Structural protein HrcQ2, C-terminal dom | 4e-06 |
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]} Length = 87 | Back information, alignment and structure |
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class: All beta proteins fold: Surface presentation of antigens (SPOA) superfamily: Surface presentation of antigens (SPOA) family: Surface presentation of antigens (SPOA) domain: Putative flagelar motor switch protein FliN species: Thermotoga maritima [TaxId: 2336] Score = 53.8 bits (130), Expect = 2e-08 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + + TLK V+ + G +I + NGK I E+ + +N+ Sbjct: 10 IPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFG 69 Query: 298 IRITDRINFDQ--KSLK 312 +RIT+ ++ + + L Sbjct: 70 VRITEIVSPKERLELLN 86 |
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]} Length = 71 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
d1o6aa_ | 87 | Putative flagelar motor switch protein FliN {Thermotoga | 99.72 | |
d1o9ya_ | 71 | Structural protein HrcQ2, C-terminal domain {Pseudomona | 99.63 | |
d1xkra_ | 205 | Chemotaxis protein CheC {Thermotoga maritima [TaxId: 23 | 98.88 | |
d1xkoa_ | 153 | Chemotaxis protein CheX {Thermotoga maritima [TaxId: 23 | 96.41 |
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: All beta proteins fold: Surface presentation of antigens (SPOA) superfamily: Surface presentation of antigens (SPOA) family: Surface presentation of antigens (SPOA) domain: Putative flagelar motor switch protein FliN species: Thermotoga maritima [TaxId: 2336] Probab=99.72 E-value=3.5e-17 Score=128.86 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=75.2 Q ss_pred HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHH Q ss_conf 99740800799998123430989945799978982578997389999999999999987889789999842581467888 Q gi|254780687|r 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 (318) Q Consensus 233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~ 312 (318) +.++++||+++|+||+++++++|+++|++||||+|+.+.+++++++|||+++|+|++|.+|+++||||++.+..+++ ++ T Consensus 5 ~~i~dipv~l~~~Lg~~~l~l~el~~L~~Gdvi~L~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~e~-~~ 83 (87) T d1o6aa_ 5 ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-LE 83 (87) T ss_dssp HHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-HH T ss_pred HHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-HH T ss_conf 23326717999999300845999857999999991898999799999999999999999999999999981595899-88 Q ss_pred HH Q ss_conf 87 Q gi|254780687|r 313 NF 314 (318) Q Consensus 313 ~~ 314 (318) .+ T Consensus 84 ~l 85 (87) T d1o6aa_ 84 LL 85 (87) T ss_dssp HH T ss_pred HH T ss_conf 64 |
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
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>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1xkoa_ d.252.1.1 (A:) Chemotaxis protein CheX {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter | ||
1o9y_A_ | 84 | (A:) HRCQ2; secretory protein, HRP, type III secre | 1e-09 | |
1o6a_A_20-96 | 77 | (A:20-96) Putative flagelar motor switch protein F | 4e-09 |
>1o9y_A (A:) HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae}Length = 84 | Back alignment and structure |
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Score = 58.1 bits (141), Expect = 1e-09 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 +D L +++ R + TL ++ L G ++ A L Sbjct: 1 GAMDPQDEPPALD----SLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCH 56 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 + + EL V ++IT + Sbjct: 57 GEQVVAEGELVDVEGRLGLQITRLVT 82 |
>1o6a_A (A:20-96) Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima}Length = 77 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | flagellar C-ring protein [Candidatus Liberibacter asiat | ||
2hp7_A_ | 183 | Flagellar motor switch protein FLIM; bacterial che | 99.94 | |
1xkr_A_ | 206 | Chemotaxis protein CHEC; signal transduction, prot | 99.48 | |
3hzh_B_ | 172 | Chemotaxis operon protein (CHEX); phosphatase, com | 98.99 | |
3h2d_A_ | 155 | CHEC-like superfamily protein; NP_719446.1, struct | 97.51 | |
3hm4_A_ | 156 | Chemotaxis protein CHEX; YP_386777.1, structural g | 97.49 | |
1o9y_A_ | 84 | HRCQ2; secretory protein, HRP, type III secretion | 99.75 | |
1o6a_A_20-96 | 77 | Putative flagelar motor switch protein FLIN; TM068 | 99.68 | |
1squ_A_ | 155 | CHEX protein; alpha-beta sandwich, structural geno | 97.09 |
>2hp7_A (A:) Flagellar motor switch protein FLIM; bacterial chemotaxis, flagellar switch complex, signaling protein; 2.00A {Thermotoga maritima} | Back alignment and structure |
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Probab=99.94 E-value=7.5e-24 Score=175.15 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=167.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999 Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318) Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318) .....++++.++++|++.++..|+++++..+++++ ++++.+|+||++.+++++++.+...++|+|.+++.++.++++.+ T Consensus 5 s~~~l~~L~~i~~~~~~~~~~~L~~ll~~~v~i~v-~i~~~~~~e~~~~~~~~~~v~~~~~~~~~g~~~l~~~~~~~~~l 83 (183) T 2hp7_A 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTM 83 (183) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE-EEEEEEHHHHHHHSCSSCEEEEEEETTCSSCEEEEECHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEEHHHHHHCCCCCEEEEEEEECCCCCEEEEEECHHHHHHH T ss_conf 46575799999999999999999998588837998-04887699998408997279998605678629999886999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988 Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318) Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318) +|+||||.|... +.|+||++|+++++++++.++.++..+|++..++++.+..++. +++..+...+++.++.++|+ T Consensus 84 v~~llGg~~~~~---~~~~lt~~E~~~l~ei~n~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (183) T 2hp7_A 84 LDIIMGGPGENP---PNRPPTEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 158 (183) T ss_dssp HHHHHTCC-------CCSCCCHHHHHHHHHHHHHHHHHHHHHTHHHHCCCEEEEEEES--CGGGCCSSCTTSEEEEEEEE T ss_pred HHHHCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHC--CHHHHCCCCCCCEEEEEEEE T ss_conf 999748999888---9886758889999999999999999998643446611110212--85765248999849999999 Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHH Q ss_conf 6667813799998504775256775 Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLI 212 (318) Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~ 212 (318) ++.++..|.+.+|+|++++++++.+ T Consensus 159 i~~~~~~~~~~i~~p~~~l~~l~~k 183 (183) T 2hp7_A 159 VSWGEFTSFINVCWPFSLLEPLLEK 183 (183) T ss_dssp EEETTEEEEEEEEEEHHHHHHHHHC T ss_pred EEECCCCEEEEEEEHHHHHHHHCCC T ss_conf 9989954089998638841534069 |
>1xkr_A (A:) Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} | Back alignment and structure |
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>3hzh_B (B:) Chemotaxis operon protein (CHEX); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
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>3h2d_A (A:) CHEC-like superfamily protein; NP_719446.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Shewanella oneidensis mr-1} PDB: 3iic_A* | Back alignment and structure |
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>3hm4_A (A:) Chemotaxis protein CHEX; YP_386777.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.30A {Desulfovibrio desulfuricans subsp} PDB: 3h4y_A* | Back alignment and structure |
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>1o9y_A (A:) HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} | Back alignment and structure |
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>1o6a_A (A:20-96) Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} | Back alignment and structure |
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>1squ_A (A:) CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} | Back alignment and structure |
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