254780735
hypothetical protein CLIBASIA_03110
| GeneID in NCBI database: | 8209740 | Locus tag: | CLIBASIA_03110 |
| Protein GI in NCBI database: | 254780735 | Protein Accession: | YP_003065148.1 |
| Gene range: | +(534217, 534444) | Protein Length: | 75aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 75 | hypothetical protein CLIBASIA_03110 [Candidatus Liberib | |||
| 254780732 | 58 | hypothetical protein CLIBASIA_03095 [Candidatus Li | 2e-07 | ||
| 254780733 | 56 | hypothetical protein CLIBASIA_03100 [Candidatus Li | 3e-07 | ||
| 254780730 | 120 | hypothetical protein CLIBASIA_03085 [Candidatus Li | 4e-07 | ||
| 254780734 | 62 | Flp/Fap pilin component [Candidatus Liberibacter a | 1e-06 | ||
| 254780736 | 60 | hypothetical protein CLIBASIA_03115 [Candidatus Li | 8e-05 |
| >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 | Back alignment |
|---|
Score = 45.4 bits (106), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41
EYG++A+LIAVAIIA+VT LGG L F +++++++
Sbjct: 20 EYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55
|
| >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 | Back alignment |
|---|
Score = 45.1 bits (105), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEV 36
EYG++A+LIAVAIIA+VT LGG L FE++
Sbjct: 20 EYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50
|
| >gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] Length = 120 | Back alignment |
|---|
Score = 44.3 bits (103), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP--PVTRPVTPTSTE 59
EYG++A+L++VAII+AV+ LG +KG ++ ++ ++ P P + P+ P S+
Sbjct: 20 EYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75
|
| >gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 | Back alignment |
|---|
Score = 42.7 bits (99), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEV 36
EYG++ +LIAV II +VT LGG LK AFE +
Sbjct: 20 EYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50
|
| >gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] Length = 60 | Back alignment |
|---|
Score = 36.6 bits (83), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 33/37 (89%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42
EYGM+ ALIAVAIIAAVT LGGSLKG FEE AN++S+
Sbjct: 19 EYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 75 | hypothetical protein CLIBASIA_03110 [Candidatus Liberib | |||
| 220913388 | 70 | Flp/Fap pilin component [Arthrobacter chlorophenolicus | 1 | 3e-04 | |
| 148261013 | 67 | Flp/Fap pilin component [Acidiphilium cryptum JF-5] Len | 1 | 0.002 | |
| 221197777 | 72 | Flp/Fap pilin component [Burkholderia multivorans CGD2M | 1 | 0.002 | |
| 254780732 | 58 | hypothetical protein CLIBASIA_03095 [Candidatus Liberib | 1 | 0.003 | |
| 221213143 | 73 | Flp/Fap pilin component [Burkholderia multivorans CGD1] | 1 | 0.003 | |
| 311107636 | 65 | Flp/Fap pilin component family protein [Achromobacter x | 1 | 0.003 | |
| 254780733 | 56 | hypothetical protein CLIBASIA_03100 [Candidatus Liberib | 1 | 0.004 | |
| 302381760 | 55 | Flp/Fap pilin component [Brevundimonas subvibrioides AT | 1 | 0.004 | |
| 33596964 | 58 | hypothetical protein BPP2371 [Bordetella parapertussis | 2 | 2e-05 | |
| 33593020 | 58 | hypothetical protein BP1991 [Bordetella pertussis Toham | 2 | 3e-05 |
| >gi|220913388|ref|YP_002488697.1| Flp/Fap pilin component [Arthrobacter chlorophenolicus A6] Length = 70 | Back alignment and organism information |
|---|
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP 47
EYG+M LIAV II AV+ LGG+L G F+ + +++ +TT P
Sbjct: 29 EYGIMVGLIAVVIIVAVSTLGGTLDGFFDSINTELAPKTTTP 70
|
Species: Arthrobacter chlorophenolicus Genus: Arthrobacter Family: Micrococcaceae Order: Actinomycetales Class: Actinobacteria (class) Phylum: Actinobacteria Superkingdom: Bacteria |
| >gi|148261013|ref|YP_001235140.1| Flp/Fap pilin component [Acidiphilium cryptum JF-5] Length = 67 | Back alignment and organism information |
|---|
| >gi|221197777|ref|ZP_03570823.1| Flp/Fap pilin component [Burkholderia multivorans CGD2M] Length = 72 | Back alignment and organism information |
|---|
| >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 | Back alignment and organism information |
|---|
| >gi|221213143|ref|ZP_03586119.1| Flp/Fap pilin component [Burkholderia multivorans CGD1] Length = 73 | Back alignment and organism information |
|---|
| >gi|311107636|ref|YP_003980489.1| Flp/Fap pilin component family protein [Achromobacter xylosoxidans A8] Length = 65 | Back alignment and organism information |
|---|
| >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 | Back alignment and organism information |
|---|
| >gi|302381760|ref|YP_003817583.1| Flp/Fap pilin component [Brevundimonas subvibrioides ATCC 15264] Length = 55 | Back alignment and organism information |
|---|
| >gi|33596964|ref|NP_884607.1| hypothetical protein BPP2371 [Bordetella parapertussis 12822] Length = 58 | Back alignment and organism information |
|---|
| >gi|33593020|ref|NP_880664.1| hypothetical protein BP1991 [Bordetella pertussis Tohama I] Length = 58 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 75 | hypothetical protein CLIBASIA_03110 [Candidatus Liberib | ||
| COG3847 | 58 | COG3847, Flp, Flp pilus assembly protein, pilin Flp [In | 1e-04 | |
| pfam04964 | 47 | pfam04964, Flp_Fap, Flp/Fap pilin component | 2e-06 |
| >gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 75 | hypothetical protein CLIBASIA_03110 [Candidatus Liberib | ||
| pfam04964 | 47 | Flp_Fap Flp/Fap pilin component. | 99.24 | |
| COG3847 | 58 | Flp Flp pilus assembly protein, pilin Flp [Intracellula | 99.02 |
| >pfam04964 Flp_Fap Flp/Fap pilin component | Back alignment and domain information |
|---|
| >COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00