254780736
hypothetical protein CLIBASIA_03115
| GeneID in NCBI database: | 8209741 | Locus tag: | CLIBASIA_03115 |
| Protein GI in NCBI database: | 254780736 | Protein Accession: | YP_003065149.1 |
| Gene range: | +(533718, 533900) | Protein Length: | 60aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | [U] Flp pilus assembly protein, pilin Flp | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | Flp pilus assembly protein, pilin Flp | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | Widespread colonization island | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 60 | hypothetical protein CLIBASIA_03115 [Candidatus Liberib | |||
| 254780733 | 56 | hypothetical protein CLIBASIA_03100 [Candidatus Li | 3e-12 | ||
| 254780734 | 62 | Flp/Fap pilin component [Candidatus Liberibacter a | 1e-11 | ||
| 254780732 | 58 | hypothetical protein CLIBASIA_03095 [Candidatus Li | 2e-11 | ||
| 254780730 | 120 | hypothetical protein CLIBASIA_03085 [Candidatus Li | 1e-10 | ||
| 254780735 | 75 | hypothetical protein CLIBASIA_03110 [Candidatus Li | 7e-06 |
| >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 | Back alignment |
|---|
Score = 61.2 bits (147), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEE 48
+N + LKDESGA AIEYG+L +LIAVAIIA+VT LGG L FE+
Sbjct: 3 MNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFED 49
|
| >gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 | Back alignment |
|---|
Score = 59.3 bits (142), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
++ + L+DESGA AIEYG+LV+LIAV II +VT LGG LK FE
Sbjct: 3 MHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFE 48
|
| >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 | Back alignment |
|---|
Score = 58.9 bits (141), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKS 58
++ + L+DESGA AIEYG+L +LIAVAIIA+VT LGG L F + ++++ N KS
Sbjct: 3 MHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKL-NPKS 58
|
| >gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] Length = 120 | Back alignment |
|---|
Score = 56.2 bits (134), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
+N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG +KG ++
Sbjct: 3 MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48
|
| >gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62] Length = 75 | Back alignment |
|---|
Score = 40.0 bits (92), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 18 IEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55
EYGM+ ALIAVAIIAAVT LGGSLKG FEE AN++S+
Sbjct: 5 YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 60 | hypothetical protein CLIBASIA_03115 [Candidatus Liberib | |||
| 83859354 | 69 | hypothetical protein OA2633_13155 [Oceanicaulis alexand | 1 | 7e-09 | |
| 315121899 | 55 | hypothetical protein CKC_00745 [Candidatus Liberibacter | 1 | 2e-08 | |
| 254780733 | 56 | hypothetical protein CLIBASIA_03100 [Candidatus Liberib | 1 | 4e-08 | |
| 16127178 | 59 | pilus subunit protein PilA [Caulobacter crescentus CB15 | 1 | 8e-08 | |
| 86355861 | 91 | component of type IV pilus, pilin subunit protein [Rhiz | 1 | 2e-07 | |
| 254780734 | 62 | Flp/Fap pilin component [Candidatus Liberibacter asiati | 1 | 2e-07 | |
| 167648155 | 61 | Flp/Fap pilin component [Caulobacter sp. K31] Length = | 1 | 2e-07 | |
| 254780732 | 58 | hypothetical protein CLIBASIA_03095 [Candidatus Liberib | 1 | 2e-07 | |
| 302381760 | 55 | Flp/Fap pilin component [Brevundimonas subvibrioides AT | 1 | 2e-07 | |
| 329847249 | 59 | flp/Fap pilin component family protein [Asticcacaulis b | 1 | 2e-07 |
| >gi|83859354|ref|ZP_00952875.1| hypothetical protein OA2633_13155 [Oceanicaulis alexandrii HTCC2633] Length = 69 | Back alignment and organism information |
|---|
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 1 MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKSA 59
M N +++ LKDESGA AIEYG++ ALIAV II AVT LG +L TF ++S SA
Sbjct: 1 MKNLVSRFLKDESGATAIEYGLIAALIAVVIITAVTTLGTNLSTTFTNVGTQLSTANSA 59
|
Species: Oceanicaulis sp. HTCC2633 Genus: Oceanicaulis Family: Hyphomonadaceae Order: Rhodobacterales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|315121899|ref|YP_004062388.1| hypothetical protein CKC_00745 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 55 | Back alignment and organism information |
|---|
| >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 | Back alignment and organism information |
|---|
| >gi|16127178|ref|NP_421742.1| pilus subunit protein PilA [Caulobacter crescentus CB15] Length = 59 | Back alignment and organism information |
|---|
| >gi|86355861|ref|YP_467753.1| component of type IV pilus, pilin subunit protein [Rhizobium etli CFN 42] Length = 91 | Back alignment and organism information |
|---|
| >gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 | Back alignment and organism information |
|---|
| >gi|167648155|ref|YP_001685818.1| Flp/Fap pilin component [Caulobacter sp. K31] Length = 61 | Back alignment and organism information |
|---|
| >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 | Back alignment and organism information |
|---|
| >gi|302381760|ref|YP_003817583.1| Flp/Fap pilin component [Brevundimonas subvibrioides ATCC 15264] Length = 55 | Back alignment and organism information |
|---|
| >gi|329847249|ref|ZP_08262277.1| flp/Fap pilin component family protein [Asticcacaulis biprosthecum C19] Length = 59 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 60 | hypothetical protein CLIBASIA_03115 [Candidatus Liberib | ||
| COG3847 | 58 | COG3847, Flp, Flp pilus assembly protein, pilin Flp [In | 7e-07 | |
| pfam04964 | 47 | pfam04964, Flp_Fap, Flp/Fap pilin component | 1e-07 |
| >gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 60 | hypothetical protein CLIBASIA_03115 [Candidatus Liberib | ||
| COG3847 | 58 | Flp Flp pilus assembly protein, pilin Flp [Intracellula | 99.81 | |
| pfam04964 | 47 | Flp_Fap Flp/Fap pilin component. | 99.72 | |
| COG4961 | 185 | TadG Flp pilus assembly protein TadG [Intracellular tra | 97.08 |
| >COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >pfam04964 Flp_Fap Flp/Fap pilin component | Back alignment and domain information |
|---|
| >COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00