254780749
lipoprotein signal peptidase transmembrane
GeneID in NCBI database: | 8209754 | Locus tag: | CLIBASIA_03180 |
Protein GI in NCBI database: | 254780749 | Protein Accession: | YP_003065162.1 |
Gene range: | -(523148, 523474) | Protein Length: | 108aa |
Gene description: | lipoprotein signal peptidase transmembrane | ||
COG prediction: | [M] [U] Lipoprotein signal peptidase | ||
KEGG prediction: | lspA; lipoprotein signal peptidase transmembrane; K03101 signal peptidase II [EC:3.4.23.36] | ||
SEED prediction: | Lipoprotein signal peptidase (EC 3.4.23.36) | ||
Pathway involved in KEGG: | Protein export [PATH:las03060] | ||
Subsystem involved in SEED: | Lipoprotein Biosynthesis;
Signal peptidase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 108 | lipoprotein signal peptidase transmembrane [Candidatus | |||
315121912 | 163 | lipoprotein signal peptidase [Candidatus Liberibacter s | 1 | 8e-24 | |
227820614 | 166 | lipoprotein signal peptidase [Sinorhizobium fredii NGR2 | 1 | 7e-23 | |
307301289 | 166 | lipoprotein signal peptidase [Sinorhizobium meliloti BL | 1 | 2e-22 | |
15964144 | 166 | lipoprotein signal peptidase transmembrane [Sinorhizobi | 1 | 3e-22 | |
150395254 | 165 | lipoprotein signal peptidase [Sinorhizobium medicae WSM | 1 | 4e-22 | |
163757827 | 167 | probable lipoprotein signal peptidase transmembrane [Ho | 1 | 1e-21 | |
222084675 | 172 | signal peptidase II [Agrobacterium radiobacter K84] Len | 1 | 2e-21 | |
218680737 | 167 | putative transmembrane lipoprotein signal peptidase [Rh | 1 | 1e-20 | |
15887692 | 162 | lipoprotein signal peptidase [Agrobacterium tumefaciens | 1 | 4e-20 | |
218671454 | 154 | lipoprotein signal peptidase protein [Rhizobium etli GR | 1 | 4e-20 |
>gi|315121912|ref|YP_004062401.1| lipoprotein signal peptidase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 163 | Back alignment and organism information |
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Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 58/93 (62%), Positives = 75/93 (80%) Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60 MLSN+SP I++SIRILI +FI FIW K+ + FD+GYILI GA+GN++DH LYGYVI Sbjct: 57 MLSNISPKIIISIRILITSFIVFIWMKSARKNFAFDMGYILIIAGAVGNIIDHYLYGYVI 116 Query: 61 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDD 93 DY+M+ TQ WSFA+FNLAD IS+G CI+I ++ Sbjct: 117 DYVMLRTQVWSFAIFNLADFLISLGACILICNE 149 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227820614|ref|YP_002824584.1| lipoprotein signal peptidase [Sinorhizobium fredii NGR234] Length = 166 | Back alignment and organism information |
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>gi|307301289|ref|ZP_07581051.1| lipoprotein signal peptidase [Sinorhizobium meliloti BL225C] Length = 166 | Back alignment and organism information |
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>gi|15964144|ref|NP_384497.1| lipoprotein signal peptidase transmembrane [Sinorhizobium meliloti 1021] Length = 166 | Back alignment and organism information |
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>gi|150395254|ref|YP_001325721.1| lipoprotein signal peptidase [Sinorhizobium medicae WSM419] Length = 165 | Back alignment and organism information |
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>gi|163757827|ref|ZP_02164916.1| probable lipoprotein signal peptidase transmembrane [Hoeflea phototrophica DFL-43] Length = 167 | Back alignment and organism information |
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>gi|222084675|ref|YP_002543204.1| signal peptidase II [Agrobacterium radiobacter K84] Length = 172 | Back alignment and organism information |
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>gi|218680737|ref|ZP_03528634.1| putative transmembrane lipoprotein signal peptidase [Rhizobium etli CIAT 894] Length = 167 | Back alignment and organism information |
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>gi|15887692|ref|NP_353373.1| lipoprotein signal peptidase [Agrobacterium tumefaciens str. C58] Length = 162 | Back alignment and organism information |
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>gi|218671454|ref|ZP_03521124.1| lipoprotein signal peptidase protein [Rhizobium etli GR56] Length = 154 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 108 | lipoprotein signal peptidase transmembrane [Candidatus | ||
PRK14795 | 158 | PRK14795, PRK14795, lipoprotein signal peptidase; Provi | 2e-25 | |
PRK00376 | 160 | PRK00376, lspA, lipoprotein signal peptidase; Reviewed | 6e-16 | |
COG0597 | 167 | COG0597, LspA, Lipoprotein signal peptidase [Cell envel | 1e-14 | |
PRK14785 | 171 | PRK14785, PRK14785, lipoprotein signal peptidase; Provi | 4e-12 | |
PRK14796 | 161 | PRK14796, PRK14796, lipoprotein signal peptidase; Provi | 1e-11 | |
PRK14791 | 146 | PRK14791, PRK14791, lipoprotein signal peptidase; Provi | 3e-11 | |
PRK14773 | 192 | PRK14773, PRK14773, lipoprotein signal peptidase; Provi | 1e-10 | |
PRK14770 | 167 | PRK14770, PRK14770, lipoprotein signal peptidase; Provi | 4e-10 | |
PRK14793 | 150 | PRK14793, PRK14793, lipoprotein signal peptidase; Provi | 4e-09 | |
TIGR00077 | 166 | TIGR00077, lspA, lipoprotein signal peptidase | 6e-09 | |
PRK14797 | 150 | PRK14797, PRK14797, lipoprotein signal peptidase; Provi | 5e-08 | |
PRK14779 | 159 | PRK14779, PRK14779, lipoprotein signal peptidase; Provi | 1e-07 | |
PRK14790 | 169 | PRK14790, PRK14790, lipoprotein signal peptidase; Provi | 4e-07 | |
PRK14775 | 170 | PRK14775, PRK14775, lipoprotein signal peptidase; Provi | 5e-07 | |
PRK14769 | 156 | PRK14769, PRK14769, lipoprotein signal peptidase; Provi | 5e-07 | |
PRK14782 | 157 | PRK14782, PRK14782, lipoprotein signal peptidase; Provi | 5e-07 | |
PRK14794 | 136 | PRK14794, PRK14794, lipoprotein signal peptidase; Provi | 3e-06 | |
PRK14778 | 186 | PRK14778, PRK14778, lipoprotein signal peptidase; Provi | 5e-06 | |
PRK14768 | 148 | PRK14768, PRK14768, lipoprotein signal peptidase; Provi | 3e-05 | |
PRK14787 | 159 | PRK14787, PRK14787, lipoprotein signal peptidase; Provi | 3e-05 | |
PRK14767 | 174 | PRK14767, PRK14767, lipoprotein signal peptidase; Provi | 4e-05 | |
PRK14792 | 159 | PRK14792, PRK14792, lipoprotein signal peptidase; Provi | 5e-05 | |
PRK14781 | 153 | PRK14781, PRK14781, lipoprotein signal peptidase; Provi | 1e-04 | |
PRK14786 | 154 | PRK14786, PRK14786, lipoprotein signal peptidase; Provi | 1e-04 | |
PRK14774 | 185 | PRK14774, PRK14774, lipoprotein signal peptidase; Provi | 2e-04 | |
PRK14777 | 184 | PRK14777, PRK14777, lipoprotein signal peptidase; Provi | 2e-04 | |
pfam01252 | 143 | pfam01252, Peptidase_A8, Signal peptidase (SPase) II | 1e-15 | |
PRK14776 | 170 | PRK14776, PRK14776, lipoprotein signal peptidase; Provi | 8e-08 | |
PRK14764 | 209 | PRK14764, PRK14764, lipoprotein signal peptidase; Provi | 1e-04 |
>gnl|CDD|173256 PRK14795, PRK14795, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|178992 PRK00376, lspA, lipoprotein signal peptidase; Reviewed | Back alignment and domain information |
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>gnl|CDD|30942 COG0597, LspA, Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion] | Back alignment and domain information |
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>gnl|CDD|184820 PRK14785, PRK14785, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184824 PRK14796, PRK14796, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184822 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173234 PRK14773, PRK14773, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173231 PRK14770, PRK14770, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184823 PRK14793, PRK14793, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|161694 TIGR00077, lspA, lipoprotein signal peptidase | Back alignment and domain information |
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>gnl|CDD|184825 PRK14797, PRK14797, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173251 PRK14790, PRK14790, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184817 PRK14775, PRK14775, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173230 PRK14769, PRK14769, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173255 PRK14794, PRK14794, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173239 PRK14778, PRK14778, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173229 PRK14768, PRK14768, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173248 PRK14787, PRK14787, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184815 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173253 PRK14792, PRK14792, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173242 PRK14781, PRK14781, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173247 PRK14786, PRK14786, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|173238 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|144736 pfam01252, Peptidase_A8, Signal peptidase (SPase) II | Back alignment and domain information |
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>gnl|CDD|173237 PRK14776, PRK14776, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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>gnl|CDD|184814 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 108 | lipoprotein signal peptidase transmembrane [Candidatus | ||
PRK00376 | 162 | lspA lipoprotein signal peptidase; Reviewed | 100.0 | |
COG0597 | 167 | LspA Lipoprotein signal peptidase [Cell envelope biogen | 100.0 | |
TIGR00077 | 183 | lspA signal peptidase II; InterPro: IPR001872 Peptidase | 100.0 | |
PRK01574 | 169 | lspA signal peptidase II; Provisional | 99.98 | |
pfam01252 | 143 | Peptidase_A8 Signal peptidase (SPase) II. | 99.97 | |
PRK00573 | 184 | lspA signal peptidase II; Provisional | 99.24 | |
pfam11368 | 248 | DUF3169 Protein of unknown function (DUF3169). Some mem | 93.48 |
>PRK00376 lspA lipoprotein signal peptidase; Reviewed | Back alignment and domain information |
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>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion] | Back alignment and domain information |
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>TIGR00077 lspA signal peptidase II; InterPro: IPR001872 Peptidases are grouped into clans and families | Back alignment and domain information |
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>PRK01574 lspA signal peptidase II; Provisional | Back alignment and domain information |
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>pfam01252 Peptidase_A8 Signal peptidase (SPase) II | Back alignment and domain information |
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>PRK00573 lspA signal peptidase II; Provisional | Back alignment and domain information |
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>pfam11368 DUF3169 Protein of unknown function (DUF3169) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00