254780777

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/242 (99%), Positives = 242/242 (100%)

Query: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
           MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG
Sbjct: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60

Query: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
           SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR
Sbjct: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120

Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
           NAVSYLSQG+VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS
Sbjct: 121 NAVSYLSQGRVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180

Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS
Sbjct: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240

Query: 241 GE 242
           GE
Sbjct: 241 GE 242

Species: Candidatus Liberibacter asiaticus
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/242 (82%), Positives = 224/242 (92%)

Query: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
           MSD PYKR+LLKVSGEALAG SGFG+D+DSV+RICADIAEV+A+G+EIG+VVGGGNIFRG
Sbjct: 1   MSDLPYKRILLKVSGEALAGDSGFGIDMDSVDRICADIAEVHARGVEIGVVVGGGNIFRG 60

Query: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
           S+++AENY   ERST DS+GMLSTVINAL LD+ALRKINVPT ILSSIFMPQVCEVFSCR
Sbjct: 61  SKIIAENYQPSERSTADSIGMLSTVINALVLDVALRKINVPTAILSSIFMPQVCEVFSCR 120

Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
           NAVSYLSQG+VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADP+  +S
Sbjct: 121 NAVSYLSQGRVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPKKDSS 180

Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           STR+DSLTY+Q +EKGL+VMD AS+VLARD +IPIIVFSIH PGG+   LSG+GR TIIS
Sbjct: 181 STRYDSLTYSQILEKGLRVMDFASIVLARDGAIPIIVFSIHCPGGMLEVLSGLGRRTIIS 240

Query: 241 GE 242
           GE
Sbjct: 241 GE 242

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  288 bits (737), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 140/236 (59%), Positives = 181/236 (76%), Gaps = 3/236 (1%)

Query: 5   PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64
           PYKR+LLK SGEAL G   FG+D+  V+RI ADIAEV A GIE+ +V+GGGNIFRG  V 
Sbjct: 6   PYKRILLKASGEALMGGQSFGIDVSVVDRIAADIAEVRAMGIEVAVVIGGGNIFRGVAVA 65

Query: 65  AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124
           +      +R T D MGML+T IN+LAL  +L K+ V TV+LS+I MPQ+CE FS R A++
Sbjct: 66  SHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAIA 122

Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184
           Y++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++  ++ RF
Sbjct: 123 YMNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKRF 182

Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           D LT+ + ++ GL VMD  +V LAR+ ++PIIV+SIH  GG+   L+G GR T++S
Sbjct: 183 DQLTHVEILQWGLSVMDSTAVTLARENNVPIIVYSIHEKGGLAKVLNGTGRFTMVS 238

Species: Bartonella tribocorum
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  287 bits (735), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 140/237 (59%), Positives = 180/237 (75%), Gaps = 3/237 (1%)

Query: 4   FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63
            PYKR+LLK SGEAL G   FG+D+  V+RI ADIAEV   GIE+ +V+GGGNIFRG  V
Sbjct: 5   LPYKRILLKASGEALMGGQSFGIDVSVVDRIAADIAEVRTMGIEVAVVIGGGNIFRGVAV 64

Query: 64  VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123
            +      +R T D MGML+T IN+LAL  +L K+ V TV+LS+I MPQ+CE FS R A+
Sbjct: 65  ASHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAI 121

Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTR 183
           +Y++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++  ++ R
Sbjct: 122 AYMNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKR 181

Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           FD LT+ + ++ GL VMD  +V LAR+ ++PIIV+SIH  GG+   L+G GR TI+S
Sbjct: 182 FDQLTHVEVLQWGLSVMDSTAVTLARENNVPIIVYSIHEKGGLAKVLNGTGRFTIVS 238

Species: Bartonella grahamii
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 180/235 (76%), Gaps = 3/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLKVSGEAL G   FG+D+   +RI +DIAEV   G+E+ IV+GGGNIFRG  V +
Sbjct: 7   YKRVLLKVSGEALMGEQSFGIDVSVADRIASDIAEVRKMGVEVAIVIGGGNIFRGVAVAS 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+T IN+LAL  +L K+ V TV+LS+I MPQ+CE FS R A+SY
Sbjct: 67  HG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAITMPQICESFSQRKAMSY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++++++ RFD
Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKINSTAKRFD 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
            LT+ + +  GL +MD  +V LAR+ +IPIIV+SIH  GG+   L+G GR T++S
Sbjct: 184 QLTHVEILRLGLSIMDTTAVTLARENNIPIIVYSIHEKGGLTKVLNGTGRFTVVS 238

Species: Bartonella bacilliformis
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 178/237 (75%), Gaps = 3/237 (1%)

Query: 4   FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63
             YKR+LLKVSGEAL G   FG+D+   +RI ADIAEV A G+E+ IV+GGGNIFRG  V
Sbjct: 5   LQYKRILLKVSGEALMGGQSFGIDVSVADRIAADIAEVRAIGVEVAIVIGGGNIFRGVAV 64

Query: 64  VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123
            +      +R T D MGML+T IN+LAL  +L K+ V TV+LS+I MPQ+CE FS R A+
Sbjct: 65  ASHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAI 121

Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTR 183
            Y++QG+VVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP+   ++ R
Sbjct: 122 GYMNQGRVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKTDPTAKR 181

Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           FD LT+ + +++GL VMD  +V LAR+ ++PIIV+SIH   G+   L+G GR TI+S
Sbjct: 182 FDRLTHVEILQRGLSVMDTTAVTLARENNVPIIVYSIHEKSGLAKVLNGTGRFTIVS 238

Species: Bartonella henselae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  281 bits (720), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 3/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLKVSGEAL G   FG+D+  V+RI  DIAEV A G+E+ IV+GGGNIFRG  V +
Sbjct: 7   YKRVLLKVSGEALMGGQSFGIDVSVVDRIATDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+T IN+L+L  +L K+ + +V+LS+I MPQ+CE FS R A+SY
Sbjct: 67  RG---VDRVTGDHMGMLATAINSLSLRTSLTKLKIESVVLSAIAMPQICESFSQRKAISY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++   + RFD
Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
            LT+ + ++ GL VMD  +V LAR+ ++PIIV+SIH  GG+   L+G G+ TI+S
Sbjct: 184 QLTHIEILQGGLSVMDTTAVTLARENNLPIIVYSIHEKGGLAKVLNGEGQFTIVS 238

Species: Bartonella sp. 1-1C
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  281 bits (719), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 178/235 (75%), Gaps = 3/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLKVSGEAL G   FG+D+   +RI  DI+EV A G+E+ IV+GGGNIFRG  V +
Sbjct: 7   YKRVLLKVSGEALMGGQSFGIDVSVADRIATDISEVRAMGVEVAIVIGGGNIFRGVAVAS 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+T IN+LAL  +L K+N+  V+LS++ MPQ+CE FS R A+SY
Sbjct: 67  RG---GDRVTGDHMGMLATAINSLALRTSLTKLNIGAVVLSAVAMPQICESFSQRKAISY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++   + RFD
Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
            LT+ + ++ GL VMD  +V LAR+ ++PIIV+SIH  GG+   L+G GR TI+S
Sbjct: 184 QLTHVEILQLGLSVMDTTAVTLARENNVPIIVYSIHEKGGLAKVLNGEGRFTIVS 238

Species: Bartonella clarridgeiae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  281 bits (718), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 179/235 (76%), Gaps = 3/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLKVSGEAL G   FG+D+  V+RI  DIAEV A G+E+ IV+GGGNIFRG  V +
Sbjct: 7   YKRVLLKVSGEALMGGQSFGIDVSVVDRIATDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+T IN+LAL  +L K+ + +V+LS+I MPQ+CE FS R A+SY
Sbjct: 67  RG---VDRVTGDHMGMLATAINSLALWTSLTKLKIESVVLSAIAMPQICESFSQRKAISY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++   + RFD
Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
            LT+ + ++ GL VMD  +V LAR+ ++PIIV+SIH  GG+   L+G G+ TI+S
Sbjct: 184 KLTHIEILQGGLSVMDTTAVTLARENNLPIIVYSIHEKGGLAKVLNGEGQFTIVS 238

Species: Bartonella rochalimae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  281 bits (718), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 178/235 (75%), Gaps = 3/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKR+LLKVSGEAL G   FG+D+   +RI +DIAEV A G+E+ IV+GGGNIFRG  V +
Sbjct: 7   YKRILLKVSGEALMGGQSFGIDVSVADRIASDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+T IN+LAL  +L K+ V  V+LS+I MPQ+CE FS R A+SY
Sbjct: 67  RG---GDRVTGDHMGMLATAINSLALRTSLTKLGVEAVVLSAITMPQICESFSQRKAISY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           ++Q KVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++  ++ RFD
Sbjct: 124 MNQEKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKRFD 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
            LT+ + ++ GL VMD  +V LAR+ ++PIIVFSIH  GG+   L+G GR TI+S
Sbjct: 184 QLTHVEILKWGLSVMDTTAVTLARENNVPIIVFSIHEKGGLIKVLNGTGRFTIVS 238

Species: Bartonella schoenbuchensis
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  310 bits (796), Expect = 3e-85
 Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 3/234 (1%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KRVLLK+SGEALAG  GFG+D + ++RI  +I EV   G+E+ IVVGGGNIFRG    A 
Sbjct: 1   KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAA 60

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
                +R+T D MGML+TV+NALAL  AL +  V T + S+I MPQV E +  R A+ +L
Sbjct: 61  G---MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHL 117

Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186
            +G+VVIF+ GTGN F TTD+AAALRA EIGADV+LK T VDGVY ADP+    + ++D 
Sbjct: 118 EKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDR 177

Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           LTY++ +EKGLKVMD  ++ LARD  IPIIVF+++ PG +   + G    T++S
Sbjct: 178 LTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231

Length = 231

 Score =  296 bits (759), Expect = 4e-81
 Identities = 133/236 (56%), Positives = 172/236 (72%), Gaps = 4/236 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLK+SGEALAG SGFG+D D +NRI  +I E+   GIE+GIV+GGGNIFRG     
Sbjct: 1   YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKE 60

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+TVIN LAL  AL K+ V T +LS+I MPQ+CE +  R A+ +
Sbjct: 61  LGI---DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKH 117

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184
           L +GKVVIFSGGTGN F TTD+AAALRA EI ADVILKGT  VDGVY+ADP+ +  + ++
Sbjct: 118 LEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKY 177

Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           +++TYN+ ++K LKVMD  +  LARD ++PI+VF+I  PG +   + G G  T++S
Sbjct: 178 ETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. Length = 233

 Score =  269 bits (690), Expect = 4e-73
 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 4/237 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           Y R+LLK+SGEALAG  GFG+D + ++RI  +I E+   G+E+ +VVGGGNI RG    A
Sbjct: 5   YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA 64

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 +R T D MGML+TV+NALAL  AL ++ V T + S+I MPQV E +S R A+ +
Sbjct: 65  AGM---DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRH 121

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT-QVDGVYSADPRVHASSTRF 184
           L +G+VVIF GGTGN   TTD+AAALRA EI ADV+LK T +VDGVY ADP+    + ++
Sbjct: 122 LEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKY 181

Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241
           D+LTY++ ++ GLKVMD  +  LARD  IPIIVF+I+ PG +   L G    TI+  
Sbjct: 182 DTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238

Length = 238

 Score =  255 bits (653), Expect = 9e-69
 Identities = 114/233 (48%), Positives = 155/233 (66%), Gaps = 4/233 (1%)

Query: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
           R++LK+SGEALAG  G G+D + +  I  +I EV   G+E+ IVVGGGNI RG    A  
Sbjct: 1   RIVLKLSGEALAG-EGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARG 59

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127
                R+T D +GML+TV+NALAL  AL K+ V T ++S+I M  V E +  R A+ +L 
Sbjct: 60  M---PRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE 116

Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
           +G++VIF GGTGN   TTD+AAALRA EIGADV+LK T VDGVY ADP+ +  + ++D +
Sbjct: 117 KGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRI 176

Query: 188 TYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           +Y++ ++KGLKVMD  ++ L R   IPIIVF+   PG +   L G    T+I 
Sbjct: 177 SYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).. Length = 229

 Score =  188 bits (480), Expect = 1e-48
 Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 7/234 (2%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KRVLLK+SGEAL+G    G D + VN +  +I  V   G +IGIV+G GN+FRG ++   
Sbjct: 1   KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKE- 59

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF-MPQVCEVFSCRNAVSY 125
                  +  D +GML TVINAL L     K  +  VI+S I  +P V E  +  +   Y
Sbjct: 60  ----LSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELY 114

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
              G +VIF+GGT N F TTD+AAALRA E+ AD+++K T+VDG+Y  DP+    + + D
Sbjct: 115 FRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKID 174

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
            LT+++ I+ GLKVMD  +  + +   I I+V +   PG +   L G    T++
Sbjct: 175 HLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228

Length = 231

 Score =  177 bits (451), Expect = 2e-45
 Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 2/220 (0%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KR+LLK+SGE+L+   GFG++++S   I   I  +   G+E+ +VVGGGNI RG +    
Sbjct: 16  KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG 75

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
           N +   R+T DSMGM++T+INALAL   L    V   + S+  +  + +V S       L
Sbjct: 76  NKI--RRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQEL 133

Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186
           ++G+V+IF+GGTGN F+TTD+ A+LRA EIGAD +LK T V+GVY  DP  ++ + RFD 
Sbjct: 134 AKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDK 193

Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGI 226
           +T+++ + K L VMD  +    RD  IPI VF +  P  +
Sbjct: 194 VTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNAL 233

Length = 249

 Score =  168 bits (427), Expect = 1e-42
 Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 5/237 (2%)

Query: 5   PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64
           PYKRVL+K+SG ALA  +G   +   +  I  +I  +   GIE+ IV+GGGNIFRG    
Sbjct: 3   PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-- 60

Query: 65  AENYLLCERSTVDSMGMLSTVINALALDLAL-RKINVPTVILSSIFMPQVCEVFSCRNAV 123
           AE + + +R   D++G L T+IN+L L   L  K N    +++SI    V E +    AV
Sbjct: 61  AEEWGI-DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAV 119

Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASST 182
            +L  G +VIF GG G  F+TTD  +  RA E+ +D IL   Q VDGV+++DP+ + S+ 
Sbjct: 120 HHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAK 179

Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
            +  L YN  + + ++VMD A+++LARD ++P  VF+   PG +     G    T+I
Sbjct: 180 MYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 236

Length = 247

 Score = 95.9 bits (239), Expect = 9e-21
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 31/237 (13%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KR+++K+ G +L        D D++ RI  +IA +   GI++ +V GGG           
Sbjct: 1   KRIVIKLGGSSLT-------DEDAIKRIAEEIALLSELGIKVVVVSGGGGFTDKLLAAYG 53

Query: 67  NYL-LCERSTVDSMGMLSTVINALALDL---ALRKINVPTV--ILSSIFMPQVCEVFSCR 120
               +  R T  + G++     A  LD+   A  ++    V  +LS   +  V    +  
Sbjct: 54  IAEKIGLRVTAGATGLIIEAALAGLLDIVVSAGERLGARAVALLLSDGGIGAVRLDANDT 113

Query: 121 NAVS-YLSQGKVVIFSGGTGN---------AFLTTDSAAALRASEIGADVILKGTQVDGV 170
            A+   L +G V + +G  G             ++D+ AAL A  +GAD ++  T VDGV
Sbjct: 114 EAIKELLEEGVVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGV 173

Query: 171 YSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSIPIIVFS 219
           Y+ADPR    +     L+Y++  E         G+KV D A++  AR   IP+++ +
Sbjct: 174 YTADPRKVPDAKLIPELSYDEAEELLAAGDGTGGMKVKDPAALKAARRGGIPVVIVN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2. Length = 230

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 30/241 (12%)

Query: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
           R+++ + G  LA       D D +    A++    + G ++ +VVGGG + R    VA  
Sbjct: 1   RIVISLGGSVLAP----EKDADFIKEY-ANVLRKISDGHKVAVVVGGGRLAREYISVARK 55

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127
               E + +D +G+++T +NA  L  AL     P                S   A+  + 
Sbjct: 56  LGASE-AFLDEIGIMATRLNARLLIAALGDAYPPVPT-------------SYEEALEAMF 101

Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
            GK+V+  GGT     +TD+ AAL A  +GAD+++  T VDGVYS DPR    + +FD L
Sbjct: 102 TGKIVV-MGGTEPGQ-STDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRL 159

Query: 188 TYNQFIE--------KGLKV-MDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238
           + ++ I+         G     D  +  +     I  IV     P  +   L G    TI
Sbjct: 160 SADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219

Query: 239 I 239
           I
Sbjct: 220 I 220

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).. Length = 221

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 29/240 (12%)

Query: 9   VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY 68
           +++ + G  L+      +D + +    A+I    +   ++G+VVGGG   R    VA   
Sbjct: 1   IVISLGGSVLSP----EIDAEFIKEF-ANILRKLSDEHKVGVVVGGGKTARRYIGVAREL 55

Query: 69  LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQ 128
              E + +D +G+ +T +NA+ L  AL     P V              +   A+  +S 
Sbjct: 56  GASE-TFLDEIGIDATRLNAMLLIAALGDDAYPKV------------PENFEEALEAMSL 102

Query: 129 GKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188
           GK+V+  GGT     TTD+ AAL A    AD+++  T VDGVY  DP+    + +FD LT
Sbjct: 103 GKIVV-MGGTHPGH-TTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLT 160

Query: 189 YNQFIE--------KGLK-VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
             + +E         G   V+D  +  +     I  IV +   P  +   L G    TII
Sbjct: 161 PEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. Length = 221

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 34/256 (13%)

Query: 10  LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYL 69
           ++K  G +++         + +  +   + ++ ++G  + +V G G       +     L
Sbjct: 1   VIKFGGSSVS-------SEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL 53

Query: 70  LCERS------TVDSMGMLSTVINALALDLALRKINVPTVILS---------SIFMPQVC 114
              R         D++  +   ++ L +  AL +  +  V L          +       
Sbjct: 54  GYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI 113

Query: 115 EVFSCRNAVSYLSQGKVVIFSGGTG--------NAFLTTDSAAALRASEIGADVILKGTQ 166
              S     S L  G + I SG  G             +DS AAL A+ + AD ++  T 
Sbjct: 114 TKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTD 173

Query: 167 VDGVYSADPRVHASSTRFDSLTY---NQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223
           VDGVY+ADPR    +     LTY    +    G  V+   +   A    IP+ + +    
Sbjct: 174 VDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANT-EN 232

Query: 224 GGIWGGLSGIGRSTII 239
            G     +  G  T+I
Sbjct: 233 PGALALFTPDGGGTLI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.. Length = 248

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 9   VLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
           ++LK+ G  +        V  D + RI  +I+       E  IVV GG  F G     E 
Sbjct: 3   IILKLGGSVITDKDKPRTVREDRLRRIAREIS---NGKPEKLIVVHGGGSF-GHPAAKEF 58

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY-- 125
            L   ++ +  +G   T +  L L+  +    +   + +   +P     F+ R   +Y  
Sbjct: 59  GLEGLKNYLSPLGFSLTHLAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLE 118

Query: 126 -----LSQGKV------VIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174
                L +G V      V+     G   ++ D      A E+  D ++  T VDGVY  D
Sbjct: 119 AIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRD 178

Query: 175 PRVHASSTRFDSLTYNQFIEK--------GLKVMDCASVVLARDCSIPIIVFSIHSPGGI 226
           P     +     +     +          G+     A + +AR     + +F+ + P  I
Sbjct: 179 PGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGK-EVYIFNGNKPENI 237

Query: 227 WGGLSGIGRSTIISG 241
           +  L G    T I G
Sbjct: 238 YRALRGENVGTRIDG 252

Length = 252

 Score =  295 bits (758), Expect = 5e-81
 Identities = 127/234 (54%), Positives = 168/234 (71%), Gaps = 3/234 (1%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KRVLLK+SGEALAG +GFG+D + +NRI  +I EV   G+E+ IVVGGGNIFRG+     
Sbjct: 1   KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEA 60

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
                +R+T D MGML+TVINALAL  AL  + V T ++S+I M  V E +  R A+ +L
Sbjct: 61  GM---DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHL 117

Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186
            +G+VVIF+GGTGN F TTD+AAALRA EI ADVILK T+VDGVY ADP+ + ++ R+D 
Sbjct: 118 EKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDH 177

Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           LTY++ + KGLKVMD  +  L RD ++PI+VF+I+ PG +   + G G  T+IS
Sbjct: 178 LTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).. Length = 231

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 12/113 (10%)

Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174
             L +G VV+   F G   +  +TT      D+ A   A+ + AD     T VDGVY+AD
Sbjct: 121 EALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTAD 180

Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224
           PR+   + + D ++Y++ +E    G KV+   SV LA+  ++P+ V S  S  
Sbjct: 181 PRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN 233

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains.. Length = 239

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174
             L +G VVI   F G   +  +TT      D++A   A+ +GAD     T VDGVY+AD
Sbjct: 121 ELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTAD 180

Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224
           PR+   + + D ++Y++ +E    G KV+   SV LA+   +P+ V S  S  
Sbjct: 181 PRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE 233

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides.. Length = 239

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175
            L +G + +   F G T     TT      D  AAL A+ + AD     T VDG+Y+ DP
Sbjct: 164 LLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223

Query: 176 RVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223
           R+   + R D ++Y + +E    G KV+   ++  A    IPI+V S  +P
Sbjct: 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP 274

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. Length = 441

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176
           L +G +V+   F G T   + TT      D  AAL A+ + AD +   T V GVY+ DPR
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185

Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225
           V  ++ R D ++Y + +E    G KV+   +V  A    +PI V S   P  
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE 237

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. Length = 401

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 12/126 (9%)

Query: 112 QVCEVFSCRNAVSYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVIL 162
           ++ +  S R  +  L +GKV +   F G   +   TT      D +AA  A+ +GAD + 
Sbjct: 157 RILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVE 216

Query: 163 KGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219
             T VDGVY+ADPR+   +     ++Y + +E    G KV+   +V  A    IP+ + +
Sbjct: 217 IWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKN 276

Query: 220 IHSPGG 225
             +P  
Sbjct: 277 TFNPDA 282

Length = 447

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 12/109 (11%)

Query: 127 SQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177
             GKV +   F G   +  +TT      D +AA  A+ +GAD +   T VDG+Y+ADPR+
Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 178 HASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223
              +     ++Y++ +E    G KV+   +V  AR  +IPI V +  +P
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP 219

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria.. Length = 227

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVD 168
               +  L +G VV+   F G T N  +TT      D +AAAL  + + A+ +   T VD
Sbjct: 123 PDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVA-LKAEYVDIYTDVD 181

Query: 169 GVYSADPRVHASSTRFDSLTYN---QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223
           G+ +ADPR+   +   D ++YN   Q   +G KV+   +V +A   +IP+ + S +S 
Sbjct: 182 GIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD 239

Length = 403

 Score = 53.2 bits (129), Expect = 5e-08
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVDGVYSA 173
             L +G VV+   F G   +  +TT      D +A AL A+ + AD     T VDGVY+ 
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAA-LKADECEIYTDVDGVYTT 181

Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG---IW 227
           DPR+   + + D ++Y + +E    G KV+   SV  A+  ++P+ V S  S      I 
Sbjct: 182 DPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNPGTLIT 241

Query: 228 GGLSGIGRSTIISG 241
           G    I    +++G
Sbjct: 242 GEEEEIMEQPVVTG 255

Length = 404

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 12/112 (10%)

Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174
           S L +G VV+   F G T +  +TT      D+ AA   + + A+ +   T VDG+ +AD
Sbjct: 126 SALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTAD 185

Query: 175 PRVHASSTRFDSLTYN---QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223
           PRV  ++   D ++YN   Q   +G KV+   +V +A   +IPI + S  S 
Sbjct: 186 PRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSE 237

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains.. Length = 244

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 12/109 (11%)

Query: 127 SQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177
             GKVV+   F     +   TT      D +AAL A+ + A+ +   T VDGVY+ADPR 
Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236

Query: 178 HASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223
              +     L+Y++ +E    G KV+   ++  A   +IPI + +  +P
Sbjct: 237 VPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNP 285

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.. Length = 293

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 16/111 (14%)

Query: 124 SYLSQGKVVIFSGGTG-----NAFLTT-------DSAAALRASEIGADVILKGTQVDGVY 171
            +L  GKVV+ +G  G     N  +TT        SA AL A+ +GAD     T V GV 
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVAL-AAALGADACEIYTDVPGVL 181

Query: 172 SADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219
           + DPR+   +   D ++ ++ +E    G  V+   +V +AR+  +P++V S
Sbjct: 182 TTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232

Length = 587

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175
           + S GKV++   F         TT      D +AA+ A+ + AD +   T VDGVYSADP
Sbjct: 176 FSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADP 235

Query: 176 RVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223
           R    +    SL+Y + +E    G KV+   ++      +IPI++ +  +P
Sbjct: 236 RKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP 286

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation.. Length = 294

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176
           L Q ++VI   F G   N  +TT      D+ A   A  + AD     T VDGVY+ DPR
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184

Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219
           V  ++ + D + +        KG KV+   SV  A   S+P+ V S
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLS 230

Length = 392

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 134 FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
           F G T +  +TT      D +A +  + + AD I     VDGV +ADPR+   +     L
Sbjct: 192 FIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRL 251

Query: 188 TYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223
           +Y + +E    G KV+   +V  A +  IP+ V +  +P
Sbjct: 252 SYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.. Length = 298

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184
           Y   G +  FS G       +D   A+ A    AD+    T VDG+Y+A+PR+ A+    
Sbjct: 185 YSKNGDIKTFSRGG------SDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPI 238

Query: 185 DSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223
             +TY +  E    G  V    +++ A +  IPI + + + P
Sbjct: 239 SEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHP 280

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.. Length = 288

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDG 169
            +  +  L    VV+   F G       TT      D +AAL A  + A  +   T V G
Sbjct: 164 AQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPG 223

Query: 170 VYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP--G 224
           +Y+ DPR+  ++ R D +++ +  E    G KV+  A+++ A   +IP+ V S   P  G
Sbjct: 224 IYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAG 283

Query: 225 GIW 227
           G W
Sbjct: 284 GTW 286

Length = 448

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201
           +D  A      +G D I     VDGV + DPR++  +     LT+++  E    G +V+ 
Sbjct: 285 SDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLH 344

Query: 202 CASVVLARDCSIPIIVFSIHSPGG 225
             S+  AR+  IP+ V + ++P  
Sbjct: 345 PFSMRPAREGRIPVRVKNSYNPTA 368

Length = 559

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201
           +D++AA  A+++ A      T V G+++A+P     +     L Y++  E    G KV+ 
Sbjct: 206 SDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH 265

Query: 202 CASVVLARDCSIPIIVFSIHSP 223
              +  AR  +IP++V S   P
Sbjct: 266 PRCIPPARRANIPMVVRSTERP 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.. Length = 295

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175
           ++    V++   F+ G     L T      D +AA+ A+ + AD     T VDGVY+ADP
Sbjct: 178 FIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237

Query: 176 RVHASSTRFDSLTYNQFIE 194
           RV   +    SL+Y + +E
Sbjct: 238 RVVPDARLLKSLSYQEAME 256

Length = 819

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 134 FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
           F G T    +TT      D +AA+  + + AD I   T VDGV + DPR+   +     +
Sbjct: 196 FIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKI 255

Query: 188 TYNQFIEK---GLKVMDCASVVLARDCSIPIIV 217
           +Y + +E    G KV+   ++  A +  IP+ V
Sbjct: 256 SYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRV 288

Length = 465

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201
           +D++AA  A+++GA  +   T V G++SA+P+    +     L Y++  E    G KV+ 
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274

Query: 202 CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242
             S+   RD  IP+ +     P      LSG    T I G+
Sbjct: 275 PRSIKPCRDAGIPMAILDTERP-----DLSG----TSIDGD 306

Length = 861

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLT------TDSAAALRASEIGADVILKGTQVDGVYSA 173
           +    Y+ QG    F G   +   T      +D +A+L A    A  +   T V+G+Y+ 
Sbjct: 163 QEDAIYIMQG----FIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTM 218

Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP--GGIW 227
           DP++   +     L++ +       G KV+    +       IPI V S      GG W
Sbjct: 219 DPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTW 277

Length = 440

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 82  LSTVINALAL---DLALRKINVPTVILS-SIF---MPQVCEVF-SCRNAVSYLSQGKVVI 133
           +S+++ + AL    +     +V TV+ + S F    P +  +       +  L  G VV+
Sbjct: 123 MSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVV 182

Query: 134 ---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184
              F G T     TT      D +AAL A  + A+ +   T V G+Y+ DPR+  ++   
Sbjct: 183 TQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAI 242

Query: 185 DSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP--GGIW 227
             +++ +  E    G KV+  A+++ A   +IP+ V S   P  GG  
Sbjct: 243 KEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTL 290

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.. Length = 292

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 5   PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64
             +R+++K+   +L   +G G+D   +  +   +A ++  G E+ ++V  G I  G   +
Sbjct: 5   SARRIVVKIGSSSLTDGTG-GLDRSKLEELVRQVAALHKAGHEV-VLVSSGAIAAGRTRL 62

Query: 65  ---AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121
                   L E+    ++G    ++       A   I V  ++L+           + RN
Sbjct: 63  GLPKRPKTLAEKQAAAAVGQ-VRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARN 121

Query: 122 AVSYLSQGKVV-IFSGGTGNA-----FLTTDSAAALRASEIGADVILKGTQVDGVYSADP 175
            +S L +  VV I +     A     F   D+ +AL A  +GAD+++  + +DG+Y A+P
Sbjct: 122 TLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANP 181

Query: 176 RVHASSTRFDSLT 188
           R +  +     + 
Sbjct: 182 RTNPDAKLIPEVE 194

Length = 369

 Score = 37.0 bits (87), Expect = 0.004
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 146 DSAAALRASEIGAD--VILKGTQVDGVYSADPRVHASSTRFD 185
           D+ +AL A+ + AD  ++L  T VDG+Y+ADPR +  +    
Sbjct: 154 DTLSALVANLVEADLLILL--TDVDGLYTADPRKNPDAKLIP 193

Length = 372