254780777
uridylate kinase
GeneID in NCBI database: | 8209783 | Locus tag: | CLIBASIA_03340 |
Protein GI in NCBI database: | 254780777 | Protein Accession: | YP_003065190.1 |
Gene range: | +(485335, 486063) | Protein Length: | 242aa |
Gene description: | uridylate kinase | ||
COG prediction: | [F] Uridylate kinase | ||
KEGG prediction: | pyrH; uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22] | ||
SEED prediction: | Uridylate kinase (EC 2.7.4.-) | ||
Pathway involved in KEGG: | Pyrimidine metabolism [PATH:las00240] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | |||
254780873 | 411 | aspartate kinase [Candidatus Liberibacter asiaticu | 3e-05 |
>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 411 | Back alignment |
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Score = 40.4 bits (93), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 32/225 (14%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVA 65 R+++K G ++A +ID + + +G E+ +VV G R +++ Sbjct: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55 Query: 66 ENYLL---CERSTVDSMG-MLSTVINALALD------LALRKINVPTVILSSIFMPQVCE 115 + + ER V S G +S+ + LAL ++L+ +P + S M ++C Sbjct: 56 QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 Query: 116 VFSCRNAVSYLSQGKVVIFSGGTG----NAFLT-----TDSAAALRASEIGADVILKGTQ 166 V + V++L + +VV+ +G G N+ T +D++A A+ I AD T Sbjct: 116 VDE-KKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD 174 Query: 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA 208 V G+Y+ DPR+ + +++ + +E G KVM SV LA Sbjct: 175 VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELA 219 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | |||
170785426 | 242 | uridylate kinase [Candidatus Liberibacter asiaticus] Le | 1 | 1e-135 | |
315121994 | 242 | uridylate kinase [Candidatus Liberibacter solanacearum | 1 | 1e-105 | |
163868103 | 239 | uridylate kinase [Bartonella tribocorum CIP 105476] Len | 1 | 5e-76 | |
240850306 | 239 | uridylate kinase [Bartonella grahamii as4aup] Length = | 1 | 7e-76 | |
121601644 | 239 | uridylate kinase [Bartonella bacilliformis KC583] Lengt | 1 | 3e-75 | |
49475412 | 239 | uridylate kinase [Bartonella henselae str. Houston-1] L | 1 | 3e-74 | |
319407372 | 239 | Uridylate kinase [Bartonella sp. 1-1C] Length = 239 | 1 | 4e-74 | |
319899041 | 238 | Uridylate kinase [Bartonella clarridgeiae 73] Length = | 1 | 5e-74 | |
319404369 | 239 | Uridylate kinase [Bartonella rochalimae ATCC BAA-1498] | 1 | 7e-74 | |
319408397 | 239 | Uridylate kinase [Bartonella schoenbuchensis R1] Length | 1 | 7e-74 |
>gi|170785426|gb|ACB37707.1| uridylate kinase [Candidatus Liberibacter asiaticus] Length = 242 | Back alignment and organism information |
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Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 241/242 (99%), Positives = 242/242 (100%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG Sbjct: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR Sbjct: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 NAVSYLSQG+VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS Sbjct: 121 NAVSYLSQGRVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS Sbjct: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 Query: 241 GE 242 GE Sbjct: 241 GE 242 |
Species: Candidatus Liberibacter asiaticus Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|315121994|ref|YP_004062483.1| uridylate kinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 242 | Back alignment and organism information |
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Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/242 (82%), Positives = 224/242 (92%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 MSD PYKR+LLKVSGEALAG SGFG+D+DSV+RICADIAEV+A+G+EIG+VVGGGNIFRG Sbjct: 1 MSDLPYKRILLKVSGEALAGDSGFGIDMDSVDRICADIAEVHARGVEIGVVVGGGNIFRG 60 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 S+++AENY ERST DS+GMLSTVINAL LD+ALRKINVPT ILSSIFMPQVCEVFSCR Sbjct: 61 SKIIAENYQPSERSTADSIGMLSTVINALVLDVALRKINVPTAILSSIFMPQVCEVFSCR 120 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 NAVSYLSQG+VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADP+ +S Sbjct: 121 NAVSYLSQGRVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPKKDSS 180 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 STR+DSLTY+Q +EKGL+VMD AS+VLARD +IPIIVFSIH PGG+ LSG+GR TIIS Sbjct: 181 STRYDSLTYSQILEKGLRVMDFASIVLARDGAIPIIVFSIHCPGGMLEVLSGLGRRTIIS 240 Query: 241 GE 242 GE Sbjct: 241 GE 242 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|163868103|ref|YP_001609307.1| uridylate kinase [Bartonella tribocorum CIP 105476] Length = 239 | Back alignment and organism information |
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Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 140/236 (59%), Positives = 181/236 (76%), Gaps = 3/236 (1%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 PYKR+LLK SGEAL G FG+D+ V+RI ADIAEV A GIE+ +V+GGGNIFRG V Sbjct: 6 PYKRILLKASGEALMGGQSFGIDVSVVDRIAADIAEVRAMGIEVAVVIGGGNIFRGVAVA 65 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124 + +R T D MGML+T IN+LAL +L K+ V TV+LS+I MPQ+CE FS R A++ Sbjct: 66 SHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAIA 122 Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184 Y++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ ++ RF Sbjct: 123 YMNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKRF 182 Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 D LT+ + ++ GL VMD +V LAR+ ++PIIV+SIH GG+ L+G GR T++S Sbjct: 183 DQLTHVEILQWGLSVMDSTAVTLARENNVPIIVYSIHEKGGLAKVLNGTGRFTMVS 238 |
Species: Bartonella tribocorum Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|240850306|ref|YP_002971699.1| uridylate kinase [Bartonella grahamii as4aup] Length = 239 | Back alignment and organism information |
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Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 140/237 (59%), Positives = 180/237 (75%), Gaps = 3/237 (1%) Query: 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 PYKR+LLK SGEAL G FG+D+ V+RI ADIAEV GIE+ +V+GGGNIFRG V Sbjct: 5 LPYKRILLKASGEALMGGQSFGIDVSVVDRIAADIAEVRTMGIEVAVVIGGGNIFRGVAV 64 Query: 64 VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123 + +R T D MGML+T IN+LAL +L K+ V TV+LS+I MPQ+CE FS R A+ Sbjct: 65 ASHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAI 121 Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTR 183 +Y++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ ++ R Sbjct: 122 AYMNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKR 181 Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 FD LT+ + ++ GL VMD +V LAR+ ++PIIV+SIH GG+ L+G GR TI+S Sbjct: 182 FDQLTHVEVLQWGLSVMDSTAVTLARENNVPIIVYSIHEKGGLAKVLNGTGRFTIVS 238 |
Species: Bartonella grahamii Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|121601644|ref|YP_988894.1| uridylate kinase [Bartonella bacilliformis KC583] Length = 239 | Back alignment and organism information |
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Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 139/235 (59%), Positives = 180/235 (76%), Gaps = 3/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLKVSGEAL G FG+D+ +RI +DIAEV G+E+ IV+GGGNIFRG V + Sbjct: 7 YKRVLLKVSGEALMGEQSFGIDVSVADRIASDIAEVRKMGVEVAIVIGGGNIFRGVAVAS 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+T IN+LAL +L K+ V TV+LS+I MPQ+CE FS R A+SY Sbjct: 67 HG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAITMPQICESFSQRKAMSY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++++++ RFD Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKINSTAKRFD 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LT+ + + GL +MD +V LAR+ +IPIIV+SIH GG+ L+G GR T++S Sbjct: 184 QLTHVEILRLGLSIMDTTAVTLARENNIPIIVYSIHEKGGLTKVLNGTGRFTVVS 238 |
Species: Bartonella bacilliformis Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|49475412|ref|YP_033453.1| uridylate kinase [Bartonella henselae str. Houston-1] Length = 239 | Back alignment and organism information |
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Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 138/237 (58%), Positives = 178/237 (75%), Gaps = 3/237 (1%) Query: 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 YKR+LLKVSGEAL G FG+D+ +RI ADIAEV A G+E+ IV+GGGNIFRG V Sbjct: 5 LQYKRILLKVSGEALMGGQSFGIDVSVADRIAADIAEVRAIGVEVAIVIGGGNIFRGVAV 64 Query: 64 VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123 + +R T D MGML+T IN+LAL +L K+ V TV+LS+I MPQ+CE FS R A+ Sbjct: 65 ASHG---GDRVTGDHMGMLATAINSLALRTSLTKLGVETVVLSAIAMPQICESFSQRKAI 121 Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTR 183 Y++QG+VVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP+ ++ R Sbjct: 122 GYMNQGRVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKTDPTAKR 181 Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 FD LT+ + +++GL VMD +V LAR+ ++PIIV+SIH G+ L+G GR TI+S Sbjct: 182 FDRLTHVEILQRGLSVMDTTAVTLARENNVPIIVYSIHEKSGLAKVLNGTGRFTIVS 238 |
Species: Bartonella henselae Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319407372|emb|CBI81023.1| Uridylate kinase [Bartonella sp. 1-1C] Length = 239 | Back alignment and organism information |
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Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 3/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLKVSGEAL G FG+D+ V+RI DIAEV A G+E+ IV+GGGNIFRG V + Sbjct: 7 YKRVLLKVSGEALMGGQSFGIDVSVVDRIATDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+T IN+L+L +L K+ + +V+LS+I MPQ+CE FS R A+SY Sbjct: 67 RG---VDRVTGDHMGMLATAINSLSLRTSLTKLKIESVVLSAIAMPQICESFSQRKAISY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ + RFD Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LT+ + ++ GL VMD +V LAR+ ++PIIV+SIH GG+ L+G G+ TI+S Sbjct: 184 QLTHIEILQGGLSVMDTTAVTLARENNLPIIVYSIHEKGGLAKVLNGEGQFTIVS 238 |
Species: Bartonella sp. 1-1C Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319899041|ref|YP_004159134.1| Uridylate kinase [Bartonella clarridgeiae 73] Length = 238 | Back alignment and organism information |
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Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 138/235 (58%), Positives = 178/235 (75%), Gaps = 3/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLKVSGEAL G FG+D+ +RI DI+EV A G+E+ IV+GGGNIFRG V + Sbjct: 7 YKRVLLKVSGEALMGGQSFGIDVSVADRIATDISEVRAMGVEVAIVIGGGNIFRGVAVAS 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+T IN+LAL +L K+N+ V+LS++ MPQ+CE FS R A+SY Sbjct: 67 RG---GDRVTGDHMGMLATAINSLALRTSLTKLNIGAVVLSAVAMPQICESFSQRKAISY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ + RFD Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LT+ + ++ GL VMD +V LAR+ ++PIIV+SIH GG+ L+G GR TI+S Sbjct: 184 QLTHVEILQLGLSVMDTTAVTLARENNVPIIVYSIHEKGGLAKVLNGEGRFTIVS 238 |
Species: Bartonella clarridgeiae Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319404369|emb|CBI77972.1| Uridylate kinase [Bartonella rochalimae ATCC BAA-1498] Length = 239 | Back alignment and organism information |
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Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 139/235 (59%), Positives = 179/235 (76%), Gaps = 3/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLKVSGEAL G FG+D+ V+RI DIAEV A G+E+ IV+GGGNIFRG V + Sbjct: 7 YKRVLLKVSGEALMGGQSFGIDVSVVDRIATDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+T IN+LAL +L K+ + +V+LS+I MPQ+CE FS R A+SY Sbjct: 67 RG---VDRVTGDHMGMLATAINSLALWTSLTKLKIESVVLSAIAMPQICESFSQRKAISY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 ++QGKVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ + RFD Sbjct: 124 MNQGKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPMAKRFD 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LT+ + ++ GL VMD +V LAR+ ++PIIV+SIH GG+ L+G G+ TI+S Sbjct: 184 KLTHIEILQGGLSVMDTTAVTLARENNLPIIVYSIHEKGGLAKVLNGEGQFTIVS 238 |
Species: Bartonella rochalimae Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319408397|emb|CBI82052.1| Uridylate kinase [Bartonella schoenbuchensis R1] Length = 239 | Back alignment and organism information |
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Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 139/235 (59%), Positives = 178/235 (75%), Gaps = 3/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKR+LLKVSGEAL G FG+D+ +RI +DIAEV A G+E+ IV+GGGNIFRG V + Sbjct: 7 YKRILLKVSGEALMGGQSFGIDVSVADRIASDIAEVRAMGVEVAIVIGGGNIFRGVAVAS 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+T IN+LAL +L K+ V V+LS+I MPQ+CE FS R A+SY Sbjct: 67 RG---GDRVTGDHMGMLATAINSLALRTSLTKLGVEAVVLSAITMPQICESFSQRKAISY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 ++Q KVVIF+GGTGN F TTDSAA LRA+EIGADV+LKGTQVDG+YSADP++ ++ RFD Sbjct: 124 MNQEKVVIFAGGTGNPFFTTDSAATLRAAEIGADVLLKGTQVDGIYSADPKIDPTAKRFD 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LT+ + ++ GL VMD +V LAR+ ++PIIVFSIH GG+ L+G GR TI+S Sbjct: 184 QLTHVEILKWGLSVMDTTAVTLARENNVPIIVFSIHEKGGLIKVLNGTGRFTIVS 238 |
Species: Bartonella schoenbuchensis Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | ||
PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 3e-85 | |
TIGR02075 | 233 | TIGR02075, pyrH_bact, uridylate kinase | 4e-81 | |
COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transport a | 4e-73 | |
cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK | 9e-69 | |
PRK14558 | 231 | PRK14558, pyrH, uridylate kinase; Provisional | 1e-48 | |
PRK14556 | 249 | PRK14556, pyrH, uridylate kinase; Provisional | 2e-45 | |
PRK14557 | 247 | PRK14557, pyrH, uridylate kinase; Provisional | 1e-42 | |
pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 9e-21 | |
cd04253 | 221 | cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase | 1e-20 | |
TIGR02076 | 221 | TIGR02076, pyrH_arch, uridylate kinase, putative | 1e-17 | |
cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily, cat | 5e-14 | |
COG1608 | 252 | COG1608, COG1608, Predicted archaeal kinase [General fu | 0.004 | |
cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the mi | 5e-81 | |
cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid | 3e-13 | |
cd04261 | 239 | cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid | 1e-12 | |
TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 6e-10 | |
TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monofuncti | 6e-10 | |
COG0527 | 447 | COG0527, LysC, Aspartokinases [Amino acid transport and | 1e-09 | |
cd04234 | 227 | cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily | 2e-09 | |
PRK08210 | 403 | PRK08210, PRK08210, aspartate kinase I; Reviewed | 3e-09 | |
PRK06635 | 404 | PRK06635, PRK06635, aspartate kinase; Reviewed | 5e-08 | |
cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid K | 6e-08 | |
cd04243 | 293 | cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid | 7e-07 | |
PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 2e-06 | |
cd04257 | 294 | cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Su | 4e-06 | |
PRK08841 | 392 | PRK08841, PRK08841, aspartate kinase; Validated | 4e-06 | |
cd04244 | 298 | cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid | 1e-05 | |
cd04245 | 288 | cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Ac | 2e-05 | |
PRK09084 | 448 | PRK09084, PRK09084, aspartate kinase III; Validated | 6e-05 | |
KOG0456 | 559 | KOG0456, KOG0456, KOG0456, Aspartate kinase [Amino acid | 8e-05 | |
cd04259 | 295 | cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase | 1e-04 | |
PRK09436 | 819 | PRK09436, thrA, bifunctional aspartokinase I/homoserine | 1e-04 | |
PRK06291 | 465 | PRK06291, PRK06291, aspartate kinase; Provisional | 1e-04 | |
PRK08961 | 861 | PRK08961, PRK08961, bifunctional aspartate kinase/diami | 2e-04 | |
PRK05925 | 440 | PRK05925, PRK05925, aspartate kinase; Provisional | 0.003 | |
cd04258 | 292 | cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Ac | 8e-07 | |
COG0263 | 369 | COG0263, ProB, Glutamate 5-kinase [Amino acid transport | 0.002 | |
PRK05429 | 372 | PRK05429, PRK05429, gamma-glutamyl kinase; Provisional | 0.004 |
>gnl|CDD|178986 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
---|
Score = 310 bits (796), Expect = 3e-85 Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 3/234 (1%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KRVLLK+SGEALAG GFG+D + ++RI +I EV G+E+ IVVGGGNIFRG A Sbjct: 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAA 60 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 +R+T D MGML+TV+NALAL AL + V T + S+I MPQV E + R A+ +L Sbjct: 61 G---MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHL 117 Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186 +G+VVIF+ GTGN F TTD+AAALRA EIGADV+LK T VDGVY ADP+ + ++D Sbjct: 118 EKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDR 177 Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LTY++ +EKGLKVMD ++ LARD IPIIVF+++ PG + + G T++S Sbjct: 178 LTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 |
Length = 231 |
>gnl|CDD|131130 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
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Score = 296 bits (759), Expect = 4e-81 Identities = 133/236 (56%), Positives = 172/236 (72%), Gaps = 4/236 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLK+SGEALAG SGFG+D D +NRI +I E+ GIE+GIV+GGGNIFRG Sbjct: 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKE 60 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+TVIN LAL AL K+ V T +LS+I MPQ+CE + R A+ + Sbjct: 61 LGI---DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKH 117 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184 L +GKVVIFSGGTGN F TTD+AAALRA EI ADVILKGT VDGVY+ADP+ + + ++ Sbjct: 118 LEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKY 177 Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 +++TYN+ ++K LKVMD + LARD ++PI+VF+I PG + + G G T++S Sbjct: 178 ETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 |
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. Length = 233 |
>gnl|CDD|30874 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
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Score = 269 bits (690), Expect = 4e-73 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 4/237 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 Y R+LLK+SGEALAG GFG+D + ++RI +I E+ G+E+ +VVGGGNI RG A Sbjct: 5 YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA 64 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 +R T D MGML+TV+NALAL AL ++ V T + S+I MPQV E +S R A+ + Sbjct: 65 AGM---DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRH 121 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT-QVDGVYSADPRVHASSTRF 184 L +G+VVIF GGTGN TTD+AAALRA EI ADV+LK T +VDGVY ADP+ + ++ Sbjct: 122 LEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKY 181 Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 D+LTY++ ++ GLKVMD + LARD IPIIVF+I+ PG + L G TI+ Sbjct: 182 DTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 |
Length = 238 |
>gnl|CDD|58605 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
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Score = 255 bits (653), Expect = 9e-69 Identities = 114/233 (48%), Positives = 155/233 (66%), Gaps = 4/233 (1%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R++LK+SGEALAG G G+D + + I +I EV G+E+ IVVGGGNI RG A Sbjct: 1 RIVLKLSGEALAG-EGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARG 59 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 R+T D +GML+TV+NALAL AL K+ V T ++S+I M V E + R A+ +L Sbjct: 60 M---PRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE 116 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 +G++VIF GGTGN TTD+AAALRA EIGADV+LK T VDGVY ADP+ + + ++D + Sbjct: 117 KGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRI 176 Query: 188 TYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 +Y++ ++KGLKVMD ++ L R IPIIVF+ PG + L G T+I Sbjct: 177 SYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 |
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).. Length = 229 |
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
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Score = 188 bits (480), Expect = 1e-48 Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 7/234 (2%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KRVLLK+SGEAL+G G D + VN + +I V G +IGIV+G GN+FRG ++ Sbjct: 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKE- 59 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF-MPQVCEVFSCRNAVSY 125 + D +GML TVINAL L K + VI+S I +P V E + + Y Sbjct: 60 ----LSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELY 114 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 G +VIF+GGT N F TTD+AAALRA E+ AD+++K T+VDG+Y DP+ + + D Sbjct: 115 FRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKID 174 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 LT+++ I+ GLKVMD + + + I I+V + PG + L G T++ Sbjct: 175 HLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228 |
Length = 231 |
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
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Score = 177 bits (451), Expect = 2e-45 Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 2/220 (0%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KR+LLK+SGE+L+ GFG++++S I I + G+E+ +VVGGGNI RG + Sbjct: 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG 75 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 N + R+T DSMGM++T+INALAL L V + S+ + + +V S L Sbjct: 76 NKI--RRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQEL 133 Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186 ++G+V+IF+GGTGN F+TTD+ A+LRA EIGAD +LK T V+GVY DP ++ + RFD Sbjct: 134 AKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDK 193 Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGI 226 +T+++ + K L VMD + RD IPI VF + P + Sbjct: 194 VTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNAL 233 |
Length = 249 |
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
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Score = 168 bits (427), Expect = 1e-42 Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 5/237 (2%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 PYKRVL+K+SG ALA +G + + I +I + GIE+ IV+GGGNIFRG Sbjct: 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-- 60 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLAL-RKINVPTVILSSIFMPQVCEVFSCRNAV 123 AE + + +R D++G L T+IN+L L L K N +++SI V E + AV Sbjct: 61 AEEWGI-DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAV 119 Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASST 182 +L G +VIF GG G F+TTD + RA E+ +D IL Q VDGV+++DP+ + S+ Sbjct: 120 HHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAK 179 Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 + L YN + + ++VMD A+++LARD ++P VF+ PG + G T+I Sbjct: 180 MYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 236 |
Length = 247 |
>gnl|CDD|144336 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
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Score = 95.9 bits (239), Expect = 9e-21 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 31/237 (13%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KR+++K+ G +L D D++ RI +IA + GI++ +V GGG Sbjct: 1 KRIVIKLGGSSLT-------DEDAIKRIAEEIALLSELGIKVVVVSGGGGFTDKLLAAYG 53 Query: 67 NYL-LCERSTVDSMGMLSTVINALALDL---ALRKINVPTV--ILSSIFMPQVCEVFSCR 120 + R T + G++ A LD+ A ++ V +LS + V + Sbjct: 54 IAEKIGLRVTAGATGLIIEAALAGLLDIVVSAGERLGARAVALLLSDGGIGAVRLDANDT 113 Query: 121 NAVS-YLSQGKVVIFSGGTGN---------AFLTTDSAAALRASEIGADVILKGTQVDGV 170 A+ L +G V + +G G ++D+ AAL A +GAD ++ T VDGV Sbjct: 114 EAIKELLEEGVVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGV 173 Query: 171 YSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSIPIIVFS 219 Y+ADPR + L+Y++ E G+KV D A++ AR IP+++ + Sbjct: 174 YTADPRKVPDAKLIPELSYDEAEELLAAGDGTGGMKVKDPAALKAARRGGIPVVIVN 230 |
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2. Length = 230 |
>gnl|CDD|58619 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
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Score = 95.7 bits (238), Expect = 1e-20 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 30/241 (12%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R+++ + G LA D D + A++ + G ++ +VVGGG + R VA Sbjct: 1 RIVISLGGSVLAP----EKDADFIKEY-ANVLRKISDGHKVAVVVGGGRLAREYISVARK 55 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 E + +D +G+++T +NA L AL P S A+ + Sbjct: 56 LGASE-AFLDEIGIMATRLNARLLIAALGDAYPPVPT-------------SYEEALEAMF 101 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 GK+V+ GGT +TD+ AAL A +GAD+++ T VDGVYS DPR + +FD L Sbjct: 102 TGKIVV-MGGTEPGQ-STDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRL 159 Query: 188 TYNQFIE--------KGLKV-MDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + ++ I+ G D + + I IV P + L G TI Sbjct: 160 SADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 Query: 239 I 239 I Sbjct: 220 I 220 |
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).. Length = 221 |
>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative | Back alignment and domain information |
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Score = 85.8 bits (213), Expect = 1e-17 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 29/240 (12%) Query: 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY 68 +++ + G L+ +D + + A+I + ++G+VVGGG R VA Sbjct: 1 IVISLGGSVLSP----EIDAEFIKEF-ANILRKLSDEHKVGVVVGGGKTARRYIGVAREL 55 Query: 69 LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQ 128 E + +D +G+ +T +NA+ L AL P V + A+ +S Sbjct: 56 GASE-TFLDEIGIDATRLNAMLLIAALGDDAYPKV------------PENFEEALEAMSL 102 Query: 129 GKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188 GK+V+ GGT TTD+ AAL A AD+++ T VDGVY DP+ + +FD LT Sbjct: 103 GKIVV-MGGTHPGH-TTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLT 160 Query: 189 YNQFIE--------KGLK-VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 + +E G V+D + + I IV + P + L G TII Sbjct: 161 PEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 |
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. Length = 221 |
>gnl|CDD|58599 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
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Score = 73.5 bits (180), Expect = 5e-14 Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 34/256 (13%) Query: 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYL 69 ++K G +++ + + + + ++ ++G + +V G G + L Sbjct: 1 VIKFGGSSVS-------SEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL 53 Query: 70 LCERS------TVDSMGMLSTVINALALDLALRKINVPTVILS---------SIFMPQVC 114 R D++ + ++ L + AL + + V L + Sbjct: 54 GYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI 113 Query: 115 EVFSCRNAVSYLSQGKVVIFSGGTG--------NAFLTTDSAAALRASEIGADVILKGTQ 166 S S L G + I SG G +DS AAL A+ + AD ++ T Sbjct: 114 TKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTD 173 Query: 167 VDGVYSADPRVHASSTRFDSLTY---NQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223 VDGVY+ADPR + LTY + G V+ + A IP+ + + Sbjct: 174 VDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANT-EN 232 Query: 224 GGIWGGLSGIGRSTII 239 G + G T+I Sbjct: 233 PGALALFTPDGGGTLI 248 |
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.. Length = 248 |
>gnl|CDD|31796 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
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Score = 37.2 bits (86), Expect = 0.004 Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 27/255 (10%) Query: 9 VLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 ++LK+ G + V D + RI +I+ E IVV GG F G E Sbjct: 3 IILKLGGSVITDKDKPRTVREDRLRRIAREIS---NGKPEKLIVVHGGGSF-GHPAAKEF 58 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY-- 125 L ++ + +G T + L L+ + + + + +P F+ R +Y Sbjct: 59 GLEGLKNYLSPLGFSLTHLAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLE 118 Query: 126 -----LSQGKV------VIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 L +G V V+ G ++ D A E+ D ++ T VDGVY D Sbjct: 119 AIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRD 178 Query: 175 PRVHASSTRFDSLTYNQFIEK--------GLKVMDCASVVLARDCSIPIIVFSIHSPGGI 226 P + + + G+ A + +AR + +F+ + P I Sbjct: 179 PGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGK-EVYIFNGNKPENI 237 Query: 227 WGGLSGIGRSTIISG 241 + L G T I G Sbjct: 238 YRALRGENVGTRIDG 252 |
Length = 252 |
>gnl|CDD|58620 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
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Score = 295 bits (758), Expect = 5e-81 Identities = 127/234 (54%), Positives = 168/234 (71%), Gaps = 3/234 (1%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KRVLLK+SGEALAG +GFG+D + +NRI +I EV G+E+ IVVGGGNIFRG+ Sbjct: 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEA 60 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 +R+T D MGML+TVINALAL AL + V T ++S+I M V E + R A+ +L Sbjct: 61 GM---DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHL 117 Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186 +G+VVIF+GGTGN F TTD+AAALRA EI ADVILK T+VDGVY ADP+ + ++ R+D Sbjct: 118 EKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDH 177 Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 LTY++ + KGLKVMD + L RD ++PI+VF+I+ PG + + G G T+IS Sbjct: 178 LTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 |
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).. Length = 231 |
>gnl|CDD|58612 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
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Score = 70.9 bits (174), Expect = 3e-13 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 12/113 (10%) Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174 L +G VV+ F G + +TT D+ A A+ + AD T VDGVY+AD Sbjct: 121 EALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTAD 180 Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224 PR+ + + D ++Y++ +E G KV+ SV LA+ ++P+ V S S Sbjct: 181 PRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN 233 |
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains.. Length = 239 |
>gnl|CDD|58627 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
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Score = 68.6 bits (168), Expect = 1e-12 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174 L +G VVI F G + +TT D++A A+ +GAD T VDGVY+AD Sbjct: 121 ELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTAD 180 Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224 PR+ + + D ++Y++ +E G KV+ SV LA+ +P+ V S S Sbjct: 181 PRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE 233 |
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides.. Length = 239 |
>gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
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Score = 59.7 bits (145), Expect = 6e-10 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 12/111 (10%) Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175 L +G + + F G T TT D AAL A+ + AD T VDG+Y+ DP Sbjct: 164 LLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 Query: 176 RVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 R+ + R D ++Y + +E G KV+ ++ A IPI+V S +P Sbjct: 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP 274 |
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. Length = 441 |
>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
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Score = 59.7 bits (145), Expect = 6e-10 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176 L +G +V+ F G T + TT D AAL A+ + AD + T V GVY+ DPR Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185 Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 V ++ R D ++Y + +E G KV+ +V A +PI V S P Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE 237 |
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. Length = 401 |
>gnl|CDD|30873 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 59.2 bits (143), Expect = 1e-09 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Query: 112 QVCEVFSCRNAVSYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVIL 162 ++ + S R + L +GKV + F G + TT D +AA A+ +GAD + Sbjct: 157 RILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVE 216 Query: 163 KGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219 T VDGVY+ADPR+ + ++Y + +E G KV+ +V A IP+ + + Sbjct: 217 IWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKN 276 Query: 220 IHSPGG 225 +P Sbjct: 277 TFNPDA 282 |
Length = 447 |
>gnl|CDD|58600 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
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Score = 58.6 bits (142), Expect = 2e-09 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 12/109 (11%) Query: 127 SQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177 GKV + F G + +TT D +AA A+ +GAD + T VDG+Y+ADPR+ Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 Query: 178 HASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 + ++Y++ +E G KV+ +V AR +IPI V + +P Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP 219 |
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria.. Length = 227 |
>gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed | Back alignment and domain information |
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Score = 57.2 bits (139), Expect = 3e-09 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 14/118 (11%) Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVD 168 + L +G VV+ F G T N +TT D +AAAL + + A+ + T VD Sbjct: 123 PDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVA-LKAEYVDIYTDVD 181 Query: 169 GVYSADPRVHASSTRFDSLTYN---QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223 G+ +ADPR+ + D ++YN Q +G KV+ +V +A +IP+ + S +S Sbjct: 182 GIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD 239 |
Length = 403 |
>gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed | Back alignment and domain information |
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Score = 53.2 bits (129), Expect = 5e-08 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVDGVYSA 173 L +G VV+ F G + +TT D +A AL A+ + AD T VDGVY+ Sbjct: 123 EALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAA-LKADECEIYTDVDGVYTT 181 Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG---IW 227 DPR+ + + D ++Y + +E G KV+ SV A+ ++P+ V S S I Sbjct: 182 DPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNPGTLIT 241 Query: 228 GGLSGIGRSTIISG 241 G I +++G Sbjct: 242 GEEEEIMEQPVVTG 255 |
Length = 404 |
>gnl|CDD|58626 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
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Score = 53.4 bits (128), Expect = 6e-08 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 12/112 (10%) Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174 S L +G VV+ F G T + +TT D+ AA + + A+ + T VDG+ +AD Sbjct: 126 SALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTAD 185 Query: 175 PRVHASSTRFDSLTYN---QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223 PRV ++ D ++YN Q +G KV+ +V +A +IPI + S S Sbjct: 186 PRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSE 237 |
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains.. Length = 244 |
>gnl|CDD|58609 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
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Score = 49.8 bits (119), Expect = 7e-07 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 12/109 (11%) Query: 127 SQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177 GKVV+ F + TT D +AAL A+ + A+ + T VDGVY+ADPR Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236 Query: 178 HASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223 + L+Y++ +E G KV+ ++ A +IPI + + +P Sbjct: 237 VPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNP 285 |
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.. Length = 293 |
>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
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Score = 48.0 bits (115), Expect = 2e-06 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 16/111 (14%) Query: 124 SYLSQGKVVIFSGGTG-----NAFLTT-------DSAAALRASEIGADVILKGTQVDGVY 171 +L GKVV+ +G G N +TT SA AL A+ +GAD T V GV Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVAL-AAALGADACEIYTDVPGVL 181 Query: 172 SADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219 + DPR+ + D ++ ++ +E G V+ +V +AR+ +P++V S Sbjct: 182 TTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232 |
Length = 587 |
>gnl|CDD|58623 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
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Score = 47.5 bits (113), Expect = 4e-06 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 12/111 (10%) Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175 + S GKV++ F TT D +AA+ A+ + AD + T VDGVYSADP Sbjct: 176 FSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADP 235 Query: 176 RVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223 R + SL+Y + +E G KV+ ++ +IPI++ + +P Sbjct: 236 RKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP 286 |
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation.. Length = 294 |
>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated | Back alignment and domain information |
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Score = 47.1 bits (112), Expect = 4e-06 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%) Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176 L Q ++VI F G N +TT D+ A A + AD T VDGVY+ DPR Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184 Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219 V ++ + D + + KG KV+ SV A S+P+ V S Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLS 230 |
Length = 392 |
>gnl|CDD|58610 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
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Score = 45.3 bits (107), Expect = 1e-05 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 134 FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 F G T + +TT D +A + + + AD I VDGV +ADPR+ + L Sbjct: 192 FIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRL 251 Query: 188 TYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP 223 +Y + +E G KV+ +V A + IP+ V + +P Sbjct: 252 SYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290 |
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.. Length = 298 |
>gnl|CDD|58611 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
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Score = 44.5 bits (105), Expect = 2e-05 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184 Y G + FS G +D A+ A AD+ T VDG+Y+A+PR+ A+ Sbjct: 185 YSKNGDIKTFSRGG------SDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPI 238 Query: 185 DSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 +TY + E G V +++ A + IPI + + + P Sbjct: 239 SEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHP 280 |
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.. Length = 288 |
>gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated | Back alignment and domain information |
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Score = 43.3 bits (103), Expect = 6e-05 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%) Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDG 169 + + L VV+ F G TT D +AAL A + A + T V G Sbjct: 164 AQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPG 223 Query: 170 VYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP--G 224 +Y+ DPR+ ++ R D +++ + E G KV+ A+++ A +IP+ V S P G Sbjct: 224 IYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAG 283 Query: 225 GIW 227 G W Sbjct: 284 GTW 286 |
Length = 448 |
>gnl|CDD|35677 KOG0456, KOG0456, KOG0456, Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 43.1 bits (101), Expect = 8e-05 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201 +D A +G D I VDGV + DPR++ + LT+++ E G +V+ Sbjct: 285 SDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLH 344 Query: 202 CASVVLARDCSIPIIVFSIHSPGG 225 S+ AR+ IP+ V + ++P Sbjct: 345 PFSMRPAREGRIPVRVKNSYNPTA 368 |
Length = 559 |
>gnl|CDD|58625 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
---|
Score = 41.9 bits (98), Expect = 1e-04 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201 +D++AA A+++ A T V G+++A+P + L Y++ E G KV+ Sbjct: 206 SDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH 265 Query: 202 CASVVLARDCSIPIIVFSIHSP 223 + AR +IP++V S P Sbjct: 266 PRCIPPARRANIPMVVRSTERP 287 |
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.. Length = 295 |
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
---|
Score = 42.1 bits (100), Expect = 1e-04 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175 ++ V++ F+ G L T D +AA+ A+ + AD T VDGVY+ADP Sbjct: 178 FIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237 Query: 176 RVHASSTRFDSLTYNQFIE 194 RV + SL+Y + +E Sbjct: 238 RVVPDARLLKSLSYQEAME 256 |
Length = 819 |
>gnl|CDD|180515 PRK06291, PRK06291, aspartate kinase; Provisional | Back alignment and domain information |
---|
Score = 41.8 bits (99), Expect = 1e-04 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%) Query: 134 FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 F G T +TT D +AA+ + + AD I T VDGV + DPR+ + + Sbjct: 196 FIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKI 255 Query: 188 TYNQFIEK---GLKVMDCASVVLARDCSIPIIV 217 +Y + +E G KV+ ++ A + IP+ V Sbjct: 256 SYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRV 288 |
Length = 465 |
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
---|
Score = 41.2 bits (97), Expect = 2e-04 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%) Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201 +D++AA A+++GA + T V G++SA+P+ + L Y++ E G KV+ Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274 Query: 202 CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 S+ RD IP+ + P LSG T I G+ Sbjct: 275 PRSIKPCRDAGIPMAILDTERP-----DLSG----TSIDGD 306 |
Length = 861 |
>gnl|CDD|135659 PRK05925, PRK05925, aspartate kinase; Provisional | Back alignment and domain information |
---|
Score = 37.5 bits (87), Expect = 0.003 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%) Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLT------TDSAAALRASEIGADVILKGTQVDGVYSA 173 + Y+ QG F G + T +D +A+L A A + T V+G+Y+ Sbjct: 163 QEDAIYIMQG----FIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTM 218 Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP--GGIW 227 DP++ + L++ + G KV+ + IPI V S GG W Sbjct: 219 DPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTW 277 |
Length = 440 |
>gnl|CDD|58624 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
---|
Score = 49.5 bits (118), Expect = 8e-07 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 82 LSTVINALAL---DLALRKINVPTVILS-SIF---MPQVCEVF-SCRNAVSYLSQGKVVI 133 +S+++ + AL + +V TV+ + S F P + + + L G VV+ Sbjct: 123 MSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVV 182 Query: 134 ---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184 F G T TT D +AAL A + A+ + T V G+Y+ DPR+ ++ Sbjct: 183 TQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAI 242 Query: 185 DSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP--GGIW 227 +++ + E G KV+ A+++ A +IP+ V S P GG Sbjct: 243 KEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTL 290 |
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.. Length = 292 |
>gnl|CDD|30612 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Score = 38.7 bits (90), Expect = 0.002 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 12/193 (6%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 +R+++K+ +L +G G+D + + +A ++ G E+ ++V G I G + Sbjct: 5 SARRIVVKIGSSSLTDGTG-GLDRSKLEELVRQVAALHKAGHEV-VLVSSGAIAAGRTRL 62 Query: 65 ---AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121 L E+ ++G ++ A I V ++L+ + RN Sbjct: 63 GLPKRPKTLAEKQAAAAVGQ-VRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARN 121 Query: 122 AVSYLSQGKVV-IFSGGTGNA-----FLTTDSAAALRASEIGADVILKGTQVDGVYSADP 175 +S L + VV I + A F D+ +AL A +GAD+++ + +DG+Y A+P Sbjct: 122 TLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANP 181 Query: 176 RVHASSTRFDSLT 188 R + + + Sbjct: 182 RTNPDAKLIPEVE 194 |
Length = 369 |
>gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
---|
Score = 37.0 bits (87), Expect = 0.004 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%) Query: 146 DSAAALRASEIGAD--VILKGTQVDGVYSADPRVHASSTRFD 185 D+ +AL A+ + AD ++L T VDG+Y+ADPR + + Sbjct: 154 DTLSALVANLVEADLLILL--TDVDGLYTADPRKNPDAKLIP 193 |
Length = 372 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | ||
PRK00358 | 231 | pyrH uridylate kinase; Provisional | 100.0 | |
cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/ch | 100.0 | |
cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, th | 100.0 | |
TIGR02075 | 236 | pyrH_bact uridylate kinase; InterPro: IPR015963 Uridyla | 100.0 | |
TIGR01027 | 379 | proB glutamate 5-kinase; InterPro: IPR005715 L-glutamat | 100.0 | |
COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and metabol | 100.0 | |
PRK12314 | 265 | gamma-glutamyl kinase; Provisional | 100.0 | |
PRK12443 | 247 | uridylate kinase; Reviewed | 100.0 | |
PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 100.0 | |
PRK13402 | 363 | gamma-glutamyl kinase; Provisional | 100.0 | |
COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and metab | 100.0 | |
cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) cat | 100.0 | |
cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) | 100.0 | |
cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf | 100.0 | |
TIGR00657 | 504 | asp_kinases aspartate kinase; InterPro: IPR001341 Bacte | 100.0 | |
TIGR02076 | 232 | pyrH_arch uridylate kinase, putative; InterPro: IPR0118 | 100.0 | |
PRK07431 | 594 | aspartate kinase; Provisional | 100.0 | |
cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Su | 100.0 | |
COG0527 | 447 | LysC Aspartokinases [Amino acid transport and metabolis | 100.0 | |
cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Su | 100.0 | |
PRK08841 | 392 | aspartate kinase; Validated | 100.0 | |
PRK06635 | 402 | aspartate kinase; Reviewed | 100.0 | |
cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Supe | 100.0 | |
PRK08210 | 405 | aspartate kinase I; Reviewed | 100.0 | |
cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fosfomy | 100.0 | |
PRK06291 | 466 | aspartate kinase; Provisional | 100.0 | |
KOG1154 | 285 | consensus | 100.0 | |
cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalytic dom | 100.0 | |
PRK08961 | 865 | bifunctional aspartate kinase/diaminopimelate decarboxy | 100.0 | |
cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Su | 100.0 | |
cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamil | 100.0 | |
PRK05925 | 440 | aspartate kinase; Provisional | 100.0 | |
cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Asp | 100.0 | |
PRK09436 | 817 | thrA bifunctional aspartokinase I/homeserine dehydrogen | 100.0 | |
PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine dehydr | 100.0 | |
cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily | 100.0 | |
TIGR01092 | 738 | P5CS delta l-pyrroline-5-carboxylate synthetase; InterP | 100.0 | |
cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily | 100.0 | |
cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase | 100.0 | |
PRK09084 | 447 | aspartate kinase III; Validated | 100.0 | |
PRK08373 | 359 | aspartate kinase; Validated | 100.0 | |
cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Su | 100.0 | |
PRK09034 | 450 | aspartate kinase; Reviewed | 100.0 | |
cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase | 100.0 | |
COG1608 | 252 | Predicted archaeal kinase [General function prediction | 99.98 | |
pfam00696 | 230 | AA_kinase Amino acid kinase family. This family include | 99.97 | |
cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alp | 99.97 | |
PRK00942 | 262 | acetylglutamate kinase; Provisional | 99.9 | |
TIGR02078 | 341 | AspKin_pair Pyrococcus aspartate kinase subunit, putati | 99.9 | |
cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-l | 99.9 | |
cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinas | 99.89 | |
KOG0456 | 559 | consensus | 99.88 | |
cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cy | 99.87 | |
TIGR00656 | 480 | asp_kin_monofn asparate kinase, monofunctional class; I | 99.84 | |
cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - | 99.81 | |
cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - | 99.79 | |
CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 99.78 | |
PRK12353 | 312 | carbamate kinase; Reviewed | 99.78 | |
COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport and m | 99.78 | |
cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kina | 99.75 | |
COG2054 | 212 | Uncharacterized archaeal kinase related to aspartokinas | 99.72 | |
PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate synthetase; R | 99.72 | |
PRK12686 | 313 | carbamate kinase; Reviewed | 99.72 | |
PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.69 | |
cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the | 99.66 | |
cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate k | 99.63 | |
PRK09411 | 297 | carbamate kinase; Reviewed | 99.61 | |
TIGR00761 | 254 | argB acetylglutamate kinase; InterPro: IPR004662 N -Ace | 99.61 | |
PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.6 | |
PRK12354 | 302 | carbamate kinase; Reviewed | 99.57 | |
COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and metabol | 99.55 | |
TIGR00746 | 321 | arcC carbamate kinase; InterPro: IPR003964 The arginine | 99.47 | |
cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) ki | 99.45 | |
PRK04531 | 421 | acetylglutamate kinase; Provisional | 99.24 | |
TIGR01890 | 439 | N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro | 98.86 | |
cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superf | 99.95 | |
PRK09181 | 476 | aspartate kinase; Validated | 99.95 | |
TIGR01689 | 126 | EcbF-BcbF capsule biosynthesis phosphatase; InterPro: I | 91.64 |
>PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=343.46 Aligned_cols=231 Identities=53% Similarity=0.830 Sum_probs=202.4 Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 49999940036853887770899999999999999976990999823654102334420377775402467888889899 Q gi|254780777|r 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242) T Consensus 1 kRIViKiG~s~L~~~~~~~l~~~~i~~la~~I~~l~~~G~evvlVsSGg~~a~~~~~~~~~~---~~~~~d~~g~~at~~ 77 (231) T PRK00358 1 KRVLLKLSGEALAGDEGFGIDPDVLDRIAQEIKELVELGVEVAVVIGGGNIFRGAAAAKAGM---DRVTADYMGMLATVM 77 (231) T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCHHHHHCCC---CCCHHHHHHHHHHHH T ss_conf 95999965565038999983999999999999999977996999983873315264774588---654699999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCC Q ss_conf 99999999976188641134001002456654321000011001111124655677762157888886416446651475 Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ 166 (242) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~td 166 (242) T Consensus 78 n~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~Iv~~~~~~~~~~nD~laa~vA~~i~AD~liilTD 157 (231) T PRK00358 78 NALALQDALERAGVNTRVQSAIPMNQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATK 157 (231) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 99999999973697326751223443234010899998753680799966756878771089999998659988988622 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 43512343223444444441159999855998140999999997499699951898547999977998782466 Q gi|254780777|r 167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 158 VDGlYt~dP~~~~dAk~I~~Is~~e~~~~g~~~~~~~Aa~~a~~~Gi~~~I~ng~~~~~i~~il~Ge~vGTlI~ 231 (231) T PRK00358 158 VDGVYDADPKKDPDAKKYDTLTYDEVLDKGLKVMDPTAISLARDNKIPIIVFNGNKPGNLKRVVKGENIGTLVS 231 (231) T ss_pred CCCEECCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC T ss_conf 37416679766998668254579999867754278999999998799899987999348999977999874749 |
|
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=341.19 Aligned_cols=231 Identities=55% Similarity=0.871 Sum_probs=207.5 Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 49999940036853887770899999999999999976990999823654102334420377775402467888889899 Q gi|254780777|r 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242) T Consensus 1 kRIViKiGGs~L~~~~~~~ld~~~I~~la~~I~~l~~~G~eVviVvggG~i~rg~~~~~~~---~~~~~~d~~g~lat~~ 77 (231) T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAG---MDRATADYMGMLATVI 77 (231) T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHCC---CCCCHHHHHHHHHHHH T ss_conf 9599995166607899988599999999999999997798699998177301242245346---6635188999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCC Q ss_conf 99999999976188641134001002456654321000011001111124655677762157888886416446651475 Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ 166 (242) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~td 166 (242) T Consensus 78 n~~ll~~al~~~g~~~~~~t~~~~~~~~~~~~~~~~~~~L~~g~VvI~~g~~g~~~~ttD~~aa~~A~~~~ad~~~~~td 157 (231) T cd04254 78 NALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATK 157 (231) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE T ss_conf 99999999986799879974223442223112899999973598899966757876551179999998729988999763 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 43512343223444444441159999855998140999999997499699951898547999977998782466 Q gi|254780777|r 167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 158 vdgvy~~dP~~~~~a~~~~~is~~e~~~~~~~v~d~~A~~~a~~~~i~~~v~~~~~~~~I~k~l~Ge~~GTlI~ 231 (231) T cd04254 158 VDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231) T ss_pred ECCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC T ss_conf 16622689655755554030569999847766243999999998699889973999526999977998864759 |
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=336.32 Aligned_cols=229 Identities=50% Similarity=0.782 Sum_probs=205.6 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999400368538877708999999999999999769909998236541023344203777754024678888898999 Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN 87 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (242) T Consensus 1 RIViKiG~s~lt~~~~-~l~~~~i~~la~~i~~l~~~g~evilV~s~G~~a~g~~~~~~~~~---~~~~~~~~~~a~~~~ 76 (229) T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP---RATADYIGMLATVMN 76 (229) T ss_pred CEEEEECHHHHCCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCC---CCHHHHHHHHHHHHH T ss_conf 9899976577018999-919999999999999999779979999899734466434415667---135999999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCC Q ss_conf 99999999761886411340010024566543210000110011111246556777621578888864164466514754 Q gi|254780777|r 88 ALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV 167 (242) Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdv 167 (242) T Consensus 77 ~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipV~~~~~~~~~~dnD~lAa~vA~~v~AD~lIilTDV 156 (229) T cd04239 77 ALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNV 156 (229) T ss_pred HHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 99999999867997898317760330102239999999853977998365578876500899999997299889861123 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 3512343223444444441159999855998140999999997499699951898547999977998782466 Q gi|254780777|r 168 DGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 168 dGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 157 DGlY~~dP~~~~~Ak~I~~is~~e~~~~g~~~~k~~Aa~~a~~~Gi~~~I~ng~~~~~i~~~l~G~~vGTlI~ 229 (229) T cd04239 157 DGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229) T ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHCCCCEECHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC T ss_conf 8617889887998748771289999875987444999999998799699977999338999977999981659 |
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=337.02 Aligned_cols=232 Identities=57% Similarity=0.893 Sum_probs=224.8 Q ss_pred CEEEEEEEEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 249999940036853-8877708999999999999999769909998236541023344203777754024678888898 Q gi|254780777|r 6 YKRVLLKVSGEALAG-ISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242) Q Consensus 6 ~KrIViKiGGSsL~~-~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242) T Consensus 1 ~kRvLlKLSGEaL~g~~~~f~ID~~~l~~iA~eik~~~~~G~evgIViGGGNIfRG~~~~---~~Gi~R~~aDymGMLAT 77 (236) T TIGR02075 1 YKRVLLKLSGEALAGKDSQFGIDPKRLNRIANEIKEVVKKGIEVGIVIGGGNIFRGKSAA---ELGIDRVSADYMGMLAT 77 (236) T ss_pred CCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---HCCCCEEECCCCCHHHH T ss_conf 964899961043247888864268999999999999986794899997782788778898---74896111432305899 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCHHH-HHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH Q ss_conf 9999999999976188641134-00100-245665432100001100111112465567776215788888641644665 Q gi|254780777|r 85 VINALALDLALRKINVPTVILS-SIFMP-QVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 (242) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~ 162 (242) T Consensus 78 viNglaL~~~L~~~g~~~~V~Sfai~~~~~i~E~Y~~~~a~~~le~g~vVIF~gGtGnPfFTTDtaA~LRAiEi~aD~~L 157 (236) T TIGR02075 78 VINGLALKDALEKLGLKTRVLSFAISMPKQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVIL 157 (236) T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEE T ss_conf 99999999888736995689877753586413232278999985359789995589869632115888766643134799 Q ss_pred HCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 1475-43512343223444444441159999855998140999999997499699951898547999977998782466 Q gi|254780777|r 163 KGTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 163 i~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 158 kgt~GVDGVY~~DPkknk~A~~y~~itY~~~L~~~L~VMD~TA~~La~dnnlpi~VFnI~~~g~l~~vi~g~~~gTlv~ 236 (236) T TIGR02075 158 KGTNGVDGVYTADPKKNKDAKKYDTITYNEVLKKNLKVMDLTAFSLAKDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 236 (236) T ss_pred EECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCEEEEC T ss_conf 8104888023587885987523166798999861471135899999987789759966665301645322784457528 |
They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins.. |
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2 | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=332.93 Aligned_cols=235 Identities=23% Similarity=0.299 Sum_probs=207.3 Q ss_pred EEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 499999400368538877-7089999999999999997699099982365410233442037777540246788888989 Q gi|254780777|r 7 KRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTV 85 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (242) T Consensus 1 ~riVvK~GsS~Lt~~~g~h~l~~~~i~~lv~~v~~L~~~Gh~vviVSSGA-~AaG~~~LG~~~rP~~la~KQAlAAVGQ~ 79 (379) T TIGR01027 1 KRIVVKVGSSSLTGSSGSHELDRSRIAELVEQVAALHAAGHEVVIVSSGA-VAAGFEALGLPERPKTLAEKQALAAVGQV 79 (379) T ss_pred CEEEEEEECCEEECCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHCCCCCCCCCHHHHHHHHHCCHH T ss_conf 96899970321117888741377999999999999986599899981675-88623445569998625678878731456 Q ss_pred HHHHHHHHHHHHHCCCC--CCCCCCHHHHHH--HHHHHHHH-CCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHH Q ss_conf 99999999997618864--113400100245--66543210-0001100111112465-----56777621578888864 Q gi|254780777|r 86 INALALDLALRKINVPT--VILSSIFMPQVC--EVFSCRNA-VSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASE 155 (242) Q Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~ 155 (242) T Consensus 80 ~Lm~~y~~~F~~Yg~~~aQiLLTr~D~~~R~eeRy~NAr~TL~~Ll~~gvvPIiNENDTVaveEi~fGDND~LSAlvA~L 159 (379) T TIGR01027 80 RLMQLYENLFSSYGLKVAQILLTRADFSKREEERYLNARNTLEALLELGVVPIINENDTVAVEEIKFGDNDTLSALVAIL 159 (379) T ss_pred HHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHH T ss_conf 89999999997548822243405798863378999999999999986594789867742244000546781699999999 Q ss_pred HCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--------------HHCCCCCCCHHHHHHHHHCCCCEEEEECC Q ss_conf 1644665147543512343223444444441159999--------------85599814099999999749969995189 Q gi|254780777|r 156 IGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF--------------IEKGLKVMDCASVVLARDCSIPIIVFSIH 221 (242) Q Consensus 156 ~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~--------------l~~G~~v~~~~A~~~a~~~gI~v~I~ng~ 221 (242) T Consensus 160 v~AD~L~LLTD~dGLYd~dPR~nPdA~~I~~V~~~~~~~~~~aG~S~g~~~~GTGGM~sK~~AA~~A~~~Gv~v~i~~g~ 239 (379) T TIGR01027 160 VGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSSGSSKVGTGGMRSKIEAARLATRAGVPVIIASGS 239 (379) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 97528977617553306874537851453412453323411114667788756646789999999998689958994488 Q ss_pred CCCHHHHHHC----CCCCCCEECCC Q ss_conf 8547999977----99878246689 Q gi|254780777|r 222 SPGGIWGGLS----GIGRSTIISGE 242 (242) Q Consensus 222 ~~~~i~~~l~----Ge~~GT~I~~~ 242 (242) T Consensus 240 ~P~~i~~~~~hhfyg~~~GT~F~a~ 264 (379) T TIGR01027 240 KPEKIADALEHHFYGAPVGTVFEAQ 264 (379) T ss_pred CHHHHHHHHHHHCCCCCCCCEECCC T ss_conf 9789999999740377877443357 |
7.2.11 from EC), catalyzes the first step in proline biosynthesis |
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=310.22 Aligned_cols=236 Identities=52% Similarity=0.788 Sum_probs=226.9 Q ss_pred CCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 88824999994003685388777089999999999999997699099982365410233442037777540246788888 Q gi|254780777|r 3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGML 82 (242) Q Consensus 3 ~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (242) T Consensus 2 ~~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~---g~~r~~~D~mGml 78 (238) T COG0528 2 KPKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAA---GMDRVTADYMGML 78 (238) T ss_pred CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHC---CCCHHHHHHHHHH T ss_conf 8633799999421036478888879899999999999998669689999789789976789876---9851224688899 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH Q ss_conf 98999999999997618864113400100245665432100001100111112465567776215788888641644665 Q gi|254780777|r 83 STVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 (242) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~ 162 (242) T Consensus 79 aTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll 158 (238) T COG0528 79 ATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLL 158 (238) T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 99999999999986358761221311176666866799999999749989991888999873479999999983886899 Q ss_pred HCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 1475-435123432234444444411599998559981409999999974996999518985479999779987824668 Q gi|254780777|r 163 KGTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 163 i~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 159 ~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~GT~V~~ 238 (238) T COG0528 159 KATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238) T ss_pred EECCCCCCEECCCCCCCCCCEECCCCCHHHHHHHCCEEECHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEECC T ss_conf 84067780368999889882232237999999724624059999999975994899937887659999748967417069 |
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>PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=309.83 Aligned_cols=235 Identities=16% Similarity=0.210 Sum_probs=187.1 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 24999994003685388777089999999999999997699099982365410233442037777540246788888989 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTV 85 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (242) T Consensus 9 ~krIViKiG~s~lt~~~g-~~~~~~i~~la~~I~~l~~~G~~vvlVsSGav~-~G~~~l~~~~~~~~~~~~qa~aavGq~ 86 (265) T PRK12314 9 AKRIVIKVGSSSLSYENG-KINLERIEQLVFVISDLMNKGKEVILVSSGAIG-AGLTKLKLDKRPTNLAEKQALAAVGQP 86 (265) T ss_pred CCEEEEEECHHHEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 878999966112678999-859999999999999999789989998637443-150013887787624679999997279 Q ss_pred HHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHH-HHHHCCHHHHCCCCCCCCCC-----CC-CCCCCHHHHHHHHHHH Q ss_conf 99999999997618864113--4001002456654-32100001100111112465-----56-7776215788888641 Q gi|254780777|r 86 INALALDLALRKINVPTVIL--SSIFMPQVCEVFS-CRNAVSYLSQGKVVIFSGGT-----GN-AFLTTDSAAALRASEI 156 (242) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~D~~a~~ia~~~ 156 (242) T Consensus 87 ~Lm~~y~~~f~~~~~~~aQiLlt~~d~~~~~~~~n~~~tl~~ll~~g~IPIvneND~Vat~ei~~fGdnD~lAA~vA~~i 166 (265) T PRK12314 87 ELMSLYSQFFARYGIVVGQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDKFGDNDRLSAIVAKLV 166 (265) T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHC T ss_conf 99999998865449815888504432127999999999999998489566870788531465445457509999998755 Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 644665147543512343223444444441159--99985----------599814099999999749969995189854 Q gi|254780777|r 157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224 (242) Q Consensus 157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~ 224 (242) T Consensus 167 ~AD~liilTdVDGvY~~dP~~~~dAk~I~~v~~~~~~~~~~~~~~~s~~gtGGM~sKl~Aa~~a~~~Gi~v~I~ng~~~~ 246 (265) T PRK12314 167 KADLLIILSDIDGLYDKNPRIYPDAKLLSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPS 246 (265) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 97669997356742279988799973840245679789975147888877686489999999999789919997089962 Q ss_pred HHHHHHCCCCCCCEECCC Q ss_conf 799997799878246689 Q gi|254780777|r 225 GIWGGLSGIGRSTIISGE 242 (242) Q Consensus 225 ~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 247 ~i~~~l~ge~~GT~f~P~ 264 (265) T PRK12314 247 DILSFLEGESIGTLFAPK 264 (265) T ss_pred HHHHHHCCCCCCEEECCC T ss_conf 899997699871598068 |
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>PRK12443 uridylate kinase; Reviewed | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=306.14 Aligned_cols=235 Identities=38% Similarity=0.616 Sum_probs=221.4 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 82499999400368538877708999999999999999769909998236541023344203777754024678888898 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242) T Consensus 3 ~ykRVllKlSGEaL~g~~~~g~d~~~l~~ia~eI~~~~~~G~evaiVvGGGNi~RG~~~~---~~gidr~~aD~iGMLaT 79 (247) T PRK12443 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE---EWGIDRVEADNIGTLGT 79 (247) T ss_pred CCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH---HCCCCCCHHHHHHHHHH T ss_conf 867899997388828999888799999999999999997798799997688502322365---53987310368889999 Q ss_pred HHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf 9999999999976-188641134001002456654321000011001111124655677762157888886416446651 Q gi|254780777|r 85 VINALALDLALRK-INVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILK 163 (242) Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i 163 (242) T Consensus 80 vmNal~L~~~l~~~~g~~~rv~sai~~~~v~e~y~~~rA~~~LekG~VVIfagGTGnP~fTTDtaAaLrA~Ei~Ad~lL~ 159 (247) T PRK12443 80 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILV 159 (247) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHC T ss_conf 99999999999975599469973233674567777899999973697899978878875204399999998828613321 Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 475-4351234322344444444115999985599814099999999749969995189854799997799878246689 Q gi|254780777|r 164 GTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 164 ~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 160 at~~VDGVYd~DP~k~~dA~k~~~ls~~e~l~~~L~vMD~tA~~lc~~~~ipi~Vfn~~~~g~l~ka~~Ge~iGT~V~~~ 239 (247) T PRK12443 160 AKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 239 (247) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEECCC T ss_conf 05665776468988999754443337999998699442999999999739988998289986399996799863288188 |
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>PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=306.38 Aligned_cols=235 Identities=19% Similarity=0.231 Sum_probs=194.4 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 82499999400368538877708999999999999999769909998236541023344203777754024678888898 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242) T Consensus 7 ~~krIVIKiGSs~Lt~~~g~-l~~~~i~~l~~~I~~L~~~G~evilVSSGAI-a~G~~~L~~~~rp~~l~~~QA~AAvGQ 84 (372) T PRK05429 7 DARRIVVKVGSSLLTDDGGG-LDRARIAELARQIAALRAAGHEVVLVSSGAV-AAGRSRLGLPKRPKTLAEKQAAAAVGQ 84 (372) T ss_pred CCCEEEEECCCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHHHCCCCCCCCCHHHHHHHHHHCH T ss_conf 28789999174336898888-8899999999999999978999999884079-862776099988563778889987156 Q ss_pred HHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHHH Q ss_conf 99999999999761886411--3400100245665432-100001100111112465-----567776215788888641 Q gi|254780777|r 85 VINALALDLALRKINVPTVI--LSSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEI 156 (242) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~~ 156 (242) T Consensus 85 ~~Lm~~Y~~~f~~~~~~~aQiLlT~~D~~~r~rylN~r~tl~~Ll~~gvIPIINENDtVat~Ei~fGDND~LaA~VA~li 164 (372) T PRK05429 85 SRLMQAYEELFARYGITVAQILLTRDDLSDRERYLNARATLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLV 164 (372) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCCCCCHHHHHHHHHH T ss_conf 99999999999863985578862665640458999999999999877960001477740005555578515882687773 Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHH----------HCCCCCCCHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 6446651475435123432234444444411599--998----------5599814099999999749969995189854 Q gi|254780777|r 157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFI----------EKGLKVMDCASVVLARDCSIPIIVFSIHSPG 224 (242) Q Consensus 157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l----------~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~ 224 (242) T Consensus 165 ~ADlLiiLTdvdGly~~~P~~~~~A~~I~~v~~i~~~i~~~~~~~~s~~GtGGM~tKl~AA~~a~~~Gi~~iIa~G~~~~ 244 (372) T PRK05429 165 EADLLILLTDIDGLYTADPRKNPDAKLIPEVEAITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGRKPD 244 (372) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 88779997456753358997686540441205787789987168877887784377999999999779989992499965 Q ss_pred HHHHHHCCCCCCCEECC Q ss_conf 79999779987824668 Q gi|254780777|r 225 GIWGGLSGIGRSTIISG 241 (242) Q Consensus 225 ~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 245 ~l~~i~~g~~~GT~f~~ 261 (372) T PRK05429 245 VLLRLLAGEAVGTLFLP 261 (372) T ss_pred HHHHHHCCCCCEEEEEC T ss_conf 89999779972699943 |
|
>PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=304.77 Aligned_cols=235 Identities=17% Similarity=0.161 Sum_probs=186.4 Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 88249999940036853887770899999999999999976990999823654102334420377775402467888889 Q gi|254780777|r 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLS 83 (242) Q Consensus 4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (242) T Consensus 3 ~~~kRIVIKiGSs~lt~~~g-~l~~~~i~~l~~~I~~L~~~G~evilVSSGAia-~G~~~L~~~~rp-~l~~kQA~AAvG 79 (363) T PRK13402 3 SPWKRIVVKVGSALITPHKQ-GCSSHYLLGIAQFIVYLRAQGHQVVLVSSGSVA-AGYHKLGFIDRP-SVPEKKAMAAAG 79 (363) T ss_pred CCCCEEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHCCCCCCC-CHHHHHHHHHHH T ss_conf 98866999967010689999-878999999999999999789989998878799-647760997689-757888999853 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHC Q ss_conf 89999999999976188641134001002456654321-0000110011111246-----55677762157888886416 Q gi|254780777|r 84 TVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN-AVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIG 157 (242) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~ 157 (242) T Consensus 80 Q~~Lm~~Y~~~F-~~~~AQiLLT~~D~~~r~rylN~r~Tl~~Ll~~gvIPIINENDtVat~Ei~fGDND~LaA~VA~li~ 158 (363) T PRK13402 80 QGDMMATWSKLF-DFPAAQLLLTHGDLRDRERYISIRNTINVLLEHGILPIINENDAVTTDKLKVGDNDNLSAMVAALAD 158 (363) T ss_pred HHHHHHHHHHHH-CCHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC T ss_conf 999999999984-7357677188878616478899999999999689422115888501001211575079999998718 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHH----------HCCCCCCCHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 446651475435123432234444444411599--998----------55998140999999997499699951898547 Q gi|254780777|r 158 ADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFI----------EKGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 (242) Q Consensus 158 ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l----------~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~ 225 (242) T Consensus 159 ADlLilLTDvdGLYd~dP~~~~~AklI~~V~~i~~~i~~~a~~~~s~~GtGGM~TKl~AA~~a~~~Gi~~~Ia~G~~~~~ 238 (363) T PRK13402 159 ADTLIICSDVDGLYDQNPRTNPDAKLIKEVTEINAEIYAMAGGAGSEVGTGGMRTKIQAAKKAISHGIETFIINGFTADI 238 (363) T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH T ss_conf 88899941668444799877876643678515667789871687788887834789999999997799699816999747 Q ss_pred HHHHHCCCCCCCEECCC Q ss_conf 99997799878246689 Q gi|254780777|r 226 IWGGLSGIGRSTIISGE 242 (242) Q Consensus 226 i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 239 i~~i~~g~~~GT~F~p~ 255 (363) T PRK13402 239 FNQLLKGQNPGTLFTPD 255 (363) T ss_pred HHHHHCCCCCCEEEECC T ss_conf 99997089862499547 |
|
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=4.2e-45 Score=298.02 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=198.1 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 82499999400368538877708999999999999999769909998236541023344203777754024678888898 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242) T Consensus 5 ~~~riVvKiGSs~Lt~~~g-~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-iaaG~~~Lg~~~rp~~l~~kQA~AAVGQ 82 (369) T COG0263 5 SARRIVVKIGSSSLTDGTG-GLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IAAGRTRLGLPKRPKTLAEKQAAAAVGQ 82 (369) T ss_pred CCEEEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHCHHHCCCCCCCCCHHHHHHHHHHCH T ss_conf 6537999977502357999-8298999999999999986898899983446-6517444199988761288899987379 Q ss_pred HHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHH-CCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHHH Q ss_conf 999999999997618864--11340010024566543210-0001100111112465-----567776215788888641 Q gi|254780777|r 85 VINALALDLALRKINVPT--VILSSIFMPQVCEVFSCRNA-VSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEI 156 (242) Q Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~~ 156 (242) T Consensus 83 ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv 162 (369) T COG0263 83 VRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV 162 (369) T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHH T ss_conf 99999999999860974568986031200089999999999999978962246487860441036568746999999874 Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 6446651475435123432234444444411599--9985----------599814099999999749969995189854 Q gi|254780777|r 157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPG 224 (242) Q Consensus 157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~ 224 (242) T Consensus 163 ~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~ 242 (369) T COG0263 163 GADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPD 242 (369) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 87879998746855589988799874610213468889987467777777561888999999999769958994699831 Q ss_pred HHHHHHCCCCCCCEECCC Q ss_conf 799997799878246689 Q gi|254780777|r 225 GIWGGLSGIGRSTIISGE 242 (242) Q Consensus 225 ~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 243 ~i~~~~~~~~~GT~F~~~ 260 (369) T COG0263 243 VILDALEGEAVGTLFEPQ 260 (369) T ss_pred HHHHHHHCCCCCCEEECC T ss_conf 589997189885189358 |
|
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
---|
Probab=100.00 E-value=5.6e-45 Score=296.94 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=180.8 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999400368538877708999999999999999769909998236541023344203777754024678888898999 Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN 87 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (242) T Consensus 1 RiViKiGss~lt~~~~-~~~~~~i~~la~~I~~l~~~G~evvlVsSGAva-~G~~~l~~~~~~~~~~~~qa~AavGQ~~L 78 (251) T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVA-AGRQRLGLEKRPKTLPEKQALAAVGQSLL 78 (251) T ss_pred CEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HCHHHCCCCCCCCHHHHHHHHHHHCCHHH T ss_conf 9899967011689999-859999999999999999789979998247566-18765399878640577889998571999 Q ss_pred HHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHCHH Q ss_conf 999999997618864113--400100245665432-10000110011111246-----5567776215788888641644 Q gi|254780777|r 88 ALALDLALRKINVPTVIL--SSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGAD 159 (242) Q Consensus 88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~ad 159 (242) T Consensus 79 m~~y~~~f~~~g~~~aQiLlt~~d~~~~~~~~n~~~ti~~LL~~g~iPIiNEND~vat~ei~fGDnD~lAa~vA~~i~Ad 158 (251) T cd04242 79 MALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNAD 158 (251) T ss_pred HHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 99999998872985003523565402749999999999999978964675588855212233447747999998651888 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 665147543512343223444444441159--99985----------599814099999999749969995189854799 Q gi|254780777|r 160 VILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIW 227 (242) Q Consensus 160 ~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~ 227 (242) T Consensus 159 ~LiilTdVDGvY~~dP~~~~~Ak~i~~v~~~~~~i~~~~~~~~s~~gtGGM~sKl~AA~~a~~~Gi~~~I~~g~~~~~i~ 238 (251) T cd04242 159 LLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLL 238 (251) T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH T ss_conf 79996446732368987687666342635798799977077888887387389999999999889969998289977899 Q ss_pred HHHCCCCCCCEEC Q ss_conf 9977998782466 Q gi|254780777|r 228 GGLSGIGRSTIIS 240 (242) Q Consensus 228 ~~l~Ge~~GT~I~ 240 (242) T Consensus 239 ~~l~g~~vGT~f~ 251 (251) T cd04242 239 DILAGEAVGTLFL 251 (251) T ss_pred HHHCCCCCCEEEC T ss_conf 9976999841669 |
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
---|
Probab=100.00 E-value=7.1e-44 Score=290.17 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=181.6 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH---------------CCCCC Q ss_conf 2499999400368538877708999999999999999769909998236541-0233442---------------03777 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-FRGSQVV---------------AENYL 69 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-~~~~~~~---------------~~~~~ 69 (242) T Consensus 8 ~krIVIKiGss~lt~~d~~~~~~~~i~~l~~~I~~L~~~G~evvlVsSGAv~~G~~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (284) T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284) T ss_pred CCEEEEEECHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCHHHCCHHCCCCHHHHHHCCCCCCCC T ss_conf 87899995702237999997589999999999999997899699990684653811421100022024433022345557 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHH-HHHHCCHHHHCCCCCCCCCC-----C-- Q ss_conf 75402467888889899999999999761886411340--01002456654-32100001100111112465-----5-- Q gi|254780777|r 70 LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSS--IFMPQVCEVFS-CRNAVSYLSQGKVVIFSGGT-----G-- 139 (242) Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~-- 139 (242) T Consensus 88 ~~~~~~~qa~aavGQ~~Lm~~y~~~f~~~~~~~aQiLlt~~D~~~r~~~~n~~~tl~~Ll~~gvIPIvNEND~Va~~e~~ 167 (284) T cd04256 88 PQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEP 167 (284) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC T ss_conf 52007899999820999999999999875981688727877730279999999999999738978576378610246556 Q ss_pred -------CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HH--------CCCCCCCH Q ss_conf -------67776215788888641644665147543512343223444444441159999--85--------59981409 Q gi|254780777|r 140 -------NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF--IE--------KGLKVMDC 202 (242) Q Consensus 140 -------~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~--l~--------~G~~v~~~ 202 (242) T Consensus 168 ~~d~~~~i~fgDND~Laa~vA~~i~Ad~LillTDVdGlyd~~P~-~~~akli~~i~~~d~~~~~~~~~s~~gtGGM~tKi 246 (284) T cd04256 168 DEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKV 246 (284) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHH T ss_conf 41123431135601899998876188889997257720269999-99874421455664888745788997617879999 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 99999997499699951898547999977998782466 Q gi|254780777|r 203 ASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 203 ~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 247 ~AA~~a~~~Gi~~~I~nG~~~~~i~~i~~g~~vGT~Ft 284 (284) T cd04256 247 KAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284) T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEC T ss_conf 99999997899799950899668999976999882549 |
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
---|
Probab=100.00 E-value=4.6e-42 Score=279.00 Aligned_cols=212 Identities=30% Similarity=0.446 Sum_probs=169.5 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999400368538877708999999999999999769909998236541023344203777754024678888898999 Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN 87 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (242) T Consensus 1 RIViKiGgs~l~~~~----~~~~i~~la~~i~~l~-~~~~~iiVvggG~~ar~~~~~~~~~-~~~~~~~~~~g~~~t~~n 74 (221) T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKIS-DGHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLN 74 (221) T ss_pred CEEEEEEHHHCCCCC----CHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH T ss_conf 979996077707998----8799999999999997-5996999987777887699999985-978999999999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCC Q ss_conf 99999999761886411340010024566543210000110011111246556777621578888864164466514754 Q gi|254780777|r 88 ALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV 167 (242) Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdv 167 (242) T Consensus 75 a~~l~~~~~~~~~~~~-------------~~~~~~~~~l~~~~i~v~~g~--~p~~ttD~laa~vA~~i~Ad~li~ltdV 139 (221) T cd04253 75 ARLLIAALGDAYPPVP-------------TSYEEALEAMFTGKIVVMGGT--EPGQSTDAVAALLAERLGADLLINATNV 139 (221) T ss_pred HHHHHHHHHCCCCCCC-------------CCHHHHHHHHHCCCEEEEECC--CCCCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf 9999997404587664-------------659999999974986999478--8988867999999998298747886435 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHC---------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCE Q ss_conf 3512343223444444441159999855---------9981409999999974996999518985479999779987824 Q gi|254780777|r 168 DGVYSADPRVHASSTRFDSLTYNQFIEK---------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 (242) Q Consensus 168 dGiyt~dP~~~~~ak~i~~is~~e~l~~---------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~ 238 (242) T Consensus 140 dGvY~~DP~~~~~Ak~i~~is~~el~~~~~~~~~~~g~~~~~d~~Aa~~a~~~gi~~~I~nG~~~~~i~~~l~Ge~vGTl 219 (221) T cd04253 140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 (221) T ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEE T ss_conf 87557898779987788658899999883567756898764799999999987998899869997589999779999716 Q ss_pred EC Q ss_conf 66 Q gi|254780777|r 239 IS 240 (242) Q Consensus 239 I~ 240 (242) T Consensus 220 I~ 221 (221) T cd04253 220 IE 221 (221) T ss_pred EC T ss_conf 69 |
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
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Probab=100.00 E-value=2.8e-42 Score=280.29 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=178.1 Q ss_pred CEEEEEEEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---------------- Q ss_conf 24999994003685388777089--9999999999999976990999823654--102334420---------------- Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDI--DSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---------------- 65 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~--~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---------------- 65 (242) T Consensus 1 m~~iV~KFGGTSVg~-------~PverI~~~A~~v~~~~~~g~~vvVVVSA~~g~Td~Lv~~~~~~~~~~~~~~~~~~~~ 73 (504) T TIGR00657 1 MMLIVQKFGGTSVGN-------APVERIRRVAKIVLKEKEKGNQVVVVVSAMAGVTDALVELAEKVSPGPSAAQEKEFLE 73 (504) T ss_pred CCEEEEEECCEEECC-------CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 974799736757667-------3237899999988887535897389997377533689999986046443303679999 Q ss_pred -----------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC Q ss_conf -----------------------------------------37777540246788888989999999999976188--64 Q gi|254780777|r 66 -----------------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINV--PT 102 (242) Q Consensus 66 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 102 (242) T Consensus 74 ~Ir~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~L~~~~~LGe~~~~~~D~ilS~GE~~S~~l~~~~l~~~G~K~~~ 153 (504) T TIGR00657 74 KIREKHLEILERLIIPQAIAEKLKRLLDAELVLLKKVLLGISYLGEVTPREMDRILSVGERLSIALLSAALEELGVKAKA 153 (504) T ss_pred HHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC T ss_conf 99984000477740773368999999998899999999987873468868744131203588899999999745785201 Q ss_pred CCCCCCHHHHH--------------HHHHHHHHHCCHHHHC-CCCCCCCCC---------CCCCCCCHHHHHHHHHHHCH Q ss_conf 11340010024--------------5665432100001100-111112465---------56777621578888864164 Q gi|254780777|r 103 VILSSIFMPQV--------------CEVFSCRNAVSYLSQG-KVVIFSGGT---------GNAFLTTDSAAALRASEIGA 158 (242) Q Consensus 103 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~a 158 (242) T Consensus 154 ~~l~~~~~~I~T~~~~~~A~p~~~~~~~~~~~rL~~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~aL~A 233 (504) T TIGR00657 154 VSLTGAQAGILTDSNFGRARPDLAVIIEILTERLEPLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAALKA 233 (504) T ss_pred CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 22114745455447667641202467776699999998469879998400410577507983068068999999986199 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHH-CCCCEEEEECCCCCHHHHHHCCCC Q ss_conf 4665147543512343223444444441159999855---998140999999997-499699951898547999977998 Q gi|254780777|r 159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARD-CSIPIIVFSIHSPGGIWGGLSGIG 234 (242) Q Consensus 159 d~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~-~gI~v~I~ng~~~~~i~~~l~Ge~ 234 (242) T Consensus 234 d~~~IyTDV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAKVLHPr~~ep~~~~~~ip~~v~st~~~---------~a 304 (504) T TIGR00657 234 DECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRDYKIPIVVKSTFNP---------EA 304 (504) T ss_pred CEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCCC---------CC T ss_conf 689998727950327886376652045448789999985031653278899984679951899607788---------99 Q ss_pred CCCEECCC Q ss_conf 78246689 Q gi|254780777|r 235 RSTIISGE 242 (242) Q Consensus 235 ~GT~I~~~ 242 (242) T Consensus 305 ~GT~I~~~ 312 (504) T TIGR00657 305 PGTLIVAS 312 (504) T ss_pred CCEEECCC T ss_conf 96687177 |
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process. |
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates | Back alignment and domain information |
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Probab=100.00 E-value=9.2e-40 Score=264.80 Aligned_cols=215 Identities=29% Similarity=0.391 Sum_probs=191.2 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHCCCC-CCCCHHHHHHHHHHHHH Q ss_conf 9999400368538877708999999999999999769--90999823654102334420377-77540246788888989 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKG--IEIGIVVGGGNIFRGSQVVAENY-LLCERSTVDSMGMLSTV 85 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g--~~vviV~sg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (242) T Consensus 1 iV~~LGGsV~~~~~---~d~e~~~~~A~~l~~~~~~Gek~~v~vVvGGG~~AR~YI~~aR~lnPG~~E~~lD~iGI~~TR 77 (232) T TIGR02076 1 IVISLGGSVLSPEN---IDAEKIKEYANILRKLSDEGEKHKVGVVVGGGKTAREYIGVARELNPGASETFLDEIGIDATR 77 (232) T ss_pred CEEECCCEEECCCC---CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 97833451616888---887899999999999984499468998878876588999999860888880245677799999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCC Q ss_conf 99999999997618864113400100245665432100001100111112465567776215788888641644665147 Q gi|254780777|r 86 INALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT 165 (242) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~t 165 (242) T Consensus 78 LNA~LLi~aL~~~a~p~vP~~~~EA~~------------~~~~~~ivVmGGt~--PGhtTDAVAA~lAE~~~ad~L~~~T 143 (232) T TIGR02076 78 LNAMLLIAALGDDAYPKVPENFEEALE------------AMSLGKIVVMGGTE--PGHTTDAVAALLAEFLEADLLINAT 143 (232) T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHH------------HHHCCCEEEECCCC--CCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999987163358989889899999------------98269879866878--9852899999997662687269982 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---------C-CCCCCHHHHHHHHHCCCCEEEEECCC--CCHHHH-H-HC Q ss_conf 543512343223444444441159999855---------9-98140999999997499699951898--547999-9-77 Q gi|254780777|r 166 QVDGVYSADPRVHASSTRFDSLTYNQFIEK---------G-LKVMDCASVVLARDCSIPIIVFSIHS--PGGIWG-G-LS 231 (242) Q Consensus 166 dvdGiyt~dP~~~~~ak~i~~is~~e~l~~---------G-~~v~~~~A~~~a~~~gI~v~I~ng~~--~~~i~~-~-l~ 231 (242) T Consensus 144 nVDGVYd~DP~~~~~A~~~~~l~~~eL~~i~~G~~~~~AG~~~~~D~lA~kii~Rs~i~t~V~~~~dfr~~~l~~~~n~~ 223 (232) T TIGR02076 144 NVDGVYDKDPNKYPDAKKFDKLTPEELVEIVRGSSSLKAGSSEVVDPLAAKIIERSKIRTIVVNGRDFRPENLEKIVNLK 223 (232) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHC T ss_conf 26852177778887840002589889999860441127899752448899999747954899648545888999998725 Q ss_pred CCCCCCEEC Q ss_conf 998782466 Q gi|254780777|r 232 GIGRSTIIS 240 (242) Q Consensus 232 Ge~~GT~I~ 240 (242) T Consensus 224 Ge~~GT~I~ 232 (232) T TIGR02076 224 GEIVGTIIE 232 (232) T ss_pred CCCCCCEEC T ss_conf 886876209 |
They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process. |
>PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=4e-39 Score=260.86 Aligned_cols=219 Identities=22% Similarity=0.300 Sum_probs=179.2 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 24999994003685388777089999999999999997699099982365--4102334420377775402467888889 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS 83 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (242) T Consensus 1 M~lIV~KFGGTSVa~-------~e~i~~va~~I~~~~~~g~~vvVVVSAmg~~Td~L~~la~~i~~~~~~re~D~lls~G 73 (594) T PRK07431 1 MALIVQKFGGTSVGS-------VERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAEEISDNPPRREMDMLLSTG 73 (594) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 974998428765798-------9999999999999987589999997499872999999999874799989999999775 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH---------HHHHCCHHHHCCCCCCCCC-----------CCCCCC Q ss_conf 89999999999976188641134001002456654---------3210000110011111246-----------556777 Q gi|254780777|r 84 TVINALALDLALRKINVPTVILSSIFMPQVCEVFS---------CRNAVSYLSQGKVVIFSGG-----------TGNAFL 143 (242) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 143 (242) T Consensus 74 E~~S~~Lla~~L~~~G~~a~sl~~~q~gi~Td~~~~~A~i~~i~~~~i~~~l~~~~v~Vv~GFqGi~~~~~~eiTTLGRG 153 (594) T PRK07431 74 EQVSIALLSMALQELGQPAISLTGAQVGIVTESEHGRARILEIKTERIQRHLDAGKVVVVAGFQGISLSSGLEITTLGRG 153 (594) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCC T ss_conf 99999999999996899719920001617767987867305068999999986299179960001257998615650688 Q ss_pred CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEEC Q ss_conf 6215788888641644665147543512343223444444441159999855---9981409999999974996999518 Q gi|254780777|r 144 TTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSI 220 (242) Q Consensus 144 ~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng 220 (242) T Consensus 154 GSD~TA~~lAaaL~Ad~~eI~TDVdGV~TaDPriv~~Ar~i~~ISY~Em~ELa~~GAkVLhprsVe~A~k~~IPI~Vrst 233 (594) T PRK07431 154 GSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSS 233 (594) T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC T ss_conf 72679999998648989999635672364699868886285712799999999758774567789999973996599667 Q ss_pred CCCCHHHHHHCCCCCCCEECC Q ss_conf 985479999779987824668 Q gi|254780777|r 221 HSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 221 ~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 234 f~~----------~~GT~I~~ 244 (594) T PRK07431 234 WSD----------APGTLLTS 244 (594) T ss_pred CCC----------CCCCEEEC T ss_conf 889----------99857844 |
|
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
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Probab=100.00 E-value=2.6e-38 Score=255.84 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=173.2 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999400368538877708999999999999999769909998236--54102334420377775402467888889899 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242) T Consensus 2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~g~~viVVvSA~gg~Td~L~~l~~~~~~~~~~~~~d~ils~GE~l 74 (239) T cd04246 2 IVQKFGGTSVAD-------IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQI 74 (239) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 899878100499-------9999999999999986798299998489865677999888764772588999999988999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHH---------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH Q ss_conf 99999999976188641134001002456---------65432100001100111112465---------5677762157 Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQVCE---------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA 148 (242) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~ 148 (242) T Consensus 75 s~~lla~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~t 154 (239) T cd04246 75 SAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTT 154 (239) T ss_pred HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCHHHH T ss_conf 99999999997599808857323625304641022233530556665552454479733234489985688179964799 Q ss_pred HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 8888864164466514754351234322344444444115999985---5998140999999997499699951898547 Q gi|254780777|r 149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 (242) Q Consensus 149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~ 225 (242) T Consensus 155 Aa~iA~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~I~nt~~~-- 232 (239) T cd04246 155 AVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSE-- 232 (239) T ss_pred HHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC-- T ss_conf 999999728888999718972573899968766572752799999998689842589999999986995899848989-- Q ss_pred HHHHHCCCCCCCEEC Q ss_conf 999977998782466 Q gi|254780777|r 226 IWGGLSGIGRSTIIS 240 (242) Q Consensus 226 i~~~l~Ge~~GT~I~ 240 (242) T Consensus 233 -------~-~GT~Is 239 (239) T cd04246 233 -------N-PGTLIT 239 (239) T ss_pred -------C-CCCEEC T ss_conf -------8-987759 |
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-38 Score=257.76 Aligned_cols=221 Identities=24% Similarity=0.282 Sum_probs=177.2 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC----------------- Q ss_conf 249999940036853887770899999999999999976990999823654--1023344203----------------- Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE----------------- 66 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~----------------- 66 (242) T Consensus 1 m~~iV~KFGGTSva~-------~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~ 73 (447) T COG0527 1 MRLIVQKFGGTSVAD-------AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIA 73 (447) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 950899868755388-------8999999999985463397189997898774589999986331445205788899999 Q ss_pred --CCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH- Q ss_conf --7777--------------------------54024678888898999999999997618864113400100245665- Q gi|254780777|r 67 --NYLL--------------------------CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVF- 117 (242) Q Consensus 67 --~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (242) T Consensus 74 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lls~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~ 153 (447) T COG0527 74 SELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNH 153 (447) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECHHHCEEEECCCC T ss_conf 98741510456676666666676666664147987899999850548899999999996799659975588425535766 Q ss_pred --------HHHH-HCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC Q ss_conf --------4321-00001100111112465---------56777621578888864164466514754351234322344 Q gi|254780777|r 118 --------SCRN-AVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHA 179 (242) Q Consensus 118 --------~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~ 179 (242) T Consensus 154 ~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp 233 (447) T COG0527 154 GNARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVP 233 (447) T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 65531035566667887446977995186651699988984798478899999997199889999878877568997788 Q ss_pred CCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 4444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 180 SSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 180 ~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 234 ~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p---------~~~GTlI~~~ 290 (447) T COG0527 234 DARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNP---------DAPGTLITAE 290 (447) T ss_pred CCEECCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECCCC---------CCCCEEEECC T ss_conf 64576846999999999778521499888899876991899716999---------9995399567 |
|
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
---|
Probab=100.00 E-value=5.9e-38 Score=253.66 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=172.0 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999400368538877708999999999999999769909998236--54102334420377775402467888889899 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242) T Consensus 2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~~~~~~~~~e~d~ils~GE~l 74 (239) T cd04261 2 IVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQV 74 (239) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 899978201399-------9999999999998986699289997798753688999999870699989998887777999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHH---------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH Q ss_conf 999999999761886411340010024---------5665432100001100111112465---------5677762157 Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQV---------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA 148 (242) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~ 148 (242) T Consensus 75 sa~ll~~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~t 154 (239) T cd04261 75 SIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTS 154 (239) T ss_pred HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHH T ss_conf 99999999997699757968666754315752045568899999986402455589734655478884688279946889 Q ss_pred HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 8888864164466514754351234322344444444115999985---5998140999999997499699951898547 Q gi|254780777|r 149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 (242) Q Consensus 149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~ 225 (242) T Consensus 155 Aai~A~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlHp~ai~p~~~~~Ipi~i~nt~~p-- 232 (239) T cd04261 155 AVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE-- 232 (239) T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC-- T ss_conf 999999669888999818983275899968876773770799999999689731589999999986994899708989-- Q ss_pred HHHHHCCCCCCCEEC Q ss_conf 999977998782466 Q gi|254780777|r 226 IWGGLSGIGRSTIIS 240 (242) Q Consensus 226 i~~~l~Ge~~GT~I~ 240 (242) T Consensus 233 -------~-~GT~Is 239 (239) T cd04261 233 -------E-PGTLIT 239 (239) T ss_pred -------C-CCCEEC T ss_conf -------7-988859 |
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
>PRK08841 aspartate kinase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=1.4e-37 Score=251.32 Aligned_cols=220 Identities=23% Similarity=0.288 Sum_probs=175.5 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 24999994003685388777089999999999999997699099982365--4102334420377775402467888889 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS 83 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (242) T Consensus 1 M~~iV~KFGGTSv~~-------~e~i~~va~~i~~~~~~~~~vvVVvSAm~g~Td~Ll~la~~i~~~~~~relD~lls~G 73 (392) T PRK08841 1 MPLIVQKFGGTSVGS-------IERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG 73 (392) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 987999158635799-------9999999999998875699899996289996899999998632599989999999765 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---------HHHHHCCHHHHCCCCCCCCCC---------CCCCCCC Q ss_conf 8999999999997618864113400100245665---------432100001100111112465---------5677762 Q gi|254780777|r 84 TVINALALDLALRKINVPTVILSSIFMPQVCEVF---------SCRNAVSYLSQGKVVIFSGGT---------GNAFLTT 145 (242) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 145 (242) T Consensus 74 E~lS~~lla~~L~~~G~~a~~l~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGS 153 (392) T PRK08841 74 EQVSMALLAMTLNKLGYKARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392) T ss_pred HHHHHHHHHHHHHHCCCCCEEEECHHCCCCCCCCCCCEEEEHHCHHHHHHHHHCCCEEEECCEEECCCCCCEEECCCCCH T ss_conf 99999999999986799757987123351246777643520203387998873598699418201079998756279977 Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 15788888641644665147543512343223444444441159999855---998140999999997499699951898 Q gi|254780777|r 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHS 222 (242) Q Consensus 146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~ 222 (242) T Consensus 154 D~sA~~lAa~l~A~~~eIwTDVdGv~taDPr~V~~A~~l~~isy~Ea~ELa~~GAkVlHp~tv~pa~~~~Ipi~v~ntf~ 233 (392) T PRK08841 154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392) T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC T ss_conf 99999999980997899985677636379868768728264789999999976996368889999987597599983687 Q ss_pred CCHHHHHHCCCCCCCEECCC Q ss_conf 54799997799878246689 Q gi|254780777|r 223 PGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 223 ~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 234 ~----------~~GT~I~~~ 243 (392) T PRK08841 234 D----------GEGTLIKGE 243 (392) T ss_pred C----------CCCEEEECC T ss_conf 9----------998289667 |
|
>PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=2.2e-37 Score=250.15 Aligned_cols=220 Identities=22% Similarity=0.306 Sum_probs=175.5 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 24999994003685388777089999999999999997699099982365--4102334420377775402467888889 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS 83 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (242) T Consensus 1 M~~iV~KFGGtSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~Li~la~~~~~~~~~~e~d~ils~G 73 (402) T PRK06635 1 MALIVQKFGGTSVGD-------VERIKNVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPAPDPRELDMLLSTG 73 (402) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 977999578503699-------9999999999987887299989996499987899999999860799879999999871 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHHCCHHHHCCCCCCCCCC---------CCCCCCC Q ss_conf 899999999999761886411340010024566---------5432100001100111112465---------5677762 Q gi|254780777|r 84 TVINALALDLALRKINVPTVILSSIFMPQVCEV---------FSCRNAVSYLSQGKVVIFSGGT---------GNAFLTT 145 (242) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 145 (242) T Consensus 74 E~~S~~l~a~~L~~~g~~a~~~~~~~~~i~td~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLgRGGS 153 (402) T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAPIITDSAHGKARITDIDPDRIREALDEGKVVVVAGFQGVDEDGEITTLGRGGS 153 (402) T ss_pred HHHHHHHHHHHHHHCCCCCEEECHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEECCCCCEEEECCCCC T ss_conf 79999999999985799858914787855315654552411422788999984697799737312257896677358872 Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 15788888641644665147543512343223444444441159999855---998140999999997499699951898 Q gi|254780777|r 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHS 222 (242) Q Consensus 146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~ 222 (242) T Consensus 154 D~sA~~~a~~l~A~~~~IwtDV~Gi~taDPr~V~~A~~i~~isy~Ea~ELa~~GAkVlHp~ti~pa~~~~Ipi~v~nTf~ 233 (402) T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVELAKKYNVPLRVRSSFS 233 (402) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC T ss_conf 18999999860775899985356305158754677721572599999999976987567888999997498089985678 Q ss_pred CCHHHHHHCCCCCCCEECCC Q ss_conf 54799997799878246689 Q gi|254780777|r 223 PGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 223 ~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 234 p---------~-~GT~I~~~ 243 (402) T PRK06635 234 E---------E-PGTLITEE 243 (402) T ss_pred C---------C-CCEEEECC T ss_conf 9---------8-97399538 |
|
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
---|
Probab=100.00 E-value=3.7e-37 Score=248.77 Aligned_cols=215 Identities=23% Similarity=0.292 Sum_probs=172.5 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------HHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 9999400368538877708999999999999999769909998236541-------023344203777754024678888 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-------FRGSQVVAENYLLCERSTVDSMGM 81 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (242) T Consensus 2 iV~KFGGtSv~~-------~~~i~~va~iI~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~l~s 74 (244) T cd04260 2 IVQKFGGTSVST-------KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMS 74 (244) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 898118523799-------9999999999988987799889997999999975899999999997530389899999997 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---------HHHHHCCHHHHCCCCCCCCCCC---------CCCC Q ss_conf 898999999999997618864113400100245665---------4321000011001111124655---------6777 Q gi|254780777|r 82 LSTVINALALDLALRKINVPTVILSSIFMPQVCEVF---------SCRNAVSYLSQGKVVIFSGGTG---------NAFL 143 (242) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 143 (242) T Consensus 75 ~GE~lSa~lla~~L~~~Gi~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GFig~~~~G~~ttLGRg 154 (244) T cd04260 75 CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRG 154 (244) T ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCEEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCEEECCCC T ss_conf 43099999999999964998748658888353268777436765158999999863463574031024689966771898 Q ss_pred CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEEC Q ss_conf 6215788888641644665147543512343223444444441159999855---9981409999999974996999518 Q gi|254780777|r 144 TTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSI 220 (242) Q Consensus 144 ~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng 220 (242) T Consensus 155 GSD~TAa~lA~~L~A~~~~IwtDV~Gv~taDPr~v~~A~~i~~lsy~EA~ELa~~GAkVlHp~ti~pa~~~~Ipi~Irnt 234 (244) T cd04260 155 GSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRST 234 (244) T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEC T ss_conf 46899999999609988999646871271799868887687731899999999779751689999999986981899707 Q ss_pred CCCCHHHHHHCCCCCCCEEC Q ss_conf 98547999977998782466 Q gi|254780777|r 221 HSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 221 ~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 235 ~~~----------~~GT~Is 244 (244) T cd04260 235 MSE----------NPGTLIT 244 (244) T ss_pred CCC----------CCCCEEC T ss_conf 988----------7987749 |
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
>PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=1.1e-36 Score=245.91 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=174.0 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------HHHHHHHCCCCCCCCHHHHHH Q ss_conf 2499999400368538877708999999999999999769909998236541-------023344203777754024678 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-------FRGSQVVAENYLLCERSTVDS 78 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-------~~~~~~~~~~~~~~~~~~~~~ 78 (242) T Consensus 1 Mk~iV~KFGGtSv~~-------~~~i~~v~~ii~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~ 73 (405) T PRK08210 1 MKIIVQKFGGTSVST-------EERRKMVVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSDISKREQDL 73 (405) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 987988168502699-------9999999999987886699889997998989981149999999986502598788999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHHCCHHHHCCCCCCCCCC---------CC Q ss_conf 88889899999999999761886411340010024566---------5432100001100111112465---------56 Q gi|254780777|r 79 MGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEV---------FSCRNAVSYLSQGKVVIFSGGT---------GN 140 (242) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~ 140 (242) T Consensus 74 l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~vv~GF~g~~~~g~~ttL 153 (405) T PRK08210 74 LMSCGEIISSVVFSNMLNEAGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGATENGDITTL 153 (405) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCCEEECCCHHHHHHHHHCCCEEEECCCEEECCCCCEEEE T ss_conf 98775899999999999747998679774158478467545530001457999998745985996174654689956662 Q ss_pred CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEE Q ss_conf 7776215788888641644665147543512343223444444441159999855---9981409999999974996999 Q gi|254780777|r 141 AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIV 217 (242) Q Consensus 141 ~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I 217 (242) T Consensus 154 GRGGSD~TA~~la~~l~A~~~~iwtDV~Gv~taDPr~v~~a~~i~~lsy~Ea~ELa~~GakVlhp~tv~pa~~~~Ipi~I 233 (405) T PRK08210 154 GRGGSDTTAAALGVALKAEYIDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (405) T ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE T ss_conf 58873279999998639988999856776563799827665111624999999999779863688999999973983999 Q ss_pred EECCCCCHHHHHHCCCCCCCEECC Q ss_conf 518985479999779987824668 Q gi|254780777|r 218 FSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 218 ~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 234 ~nT~~~----------~~GT~I~~ 247 (405) T PRK08210 234 RSTYSD----------SKGTLITS 247 (405) T ss_pred ECCCCC----------CCCCEEEC T ss_conf 736899----------99867934 |
|
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
---|
Probab=100.00 E-value=5.5e-36 Score=241.51 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=166.8 Q ss_pred EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH Q ss_conf 99994003685388-777089999999999999997699099982365410233442037--777540246788888989 Q gi|254780777|r 9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV 85 (242) Q Consensus 9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (242) T Consensus 2 IVIKiGgs~lt~~~~~~~~~~~~i~~~~~~i~~~~--~~~iiiV~GgG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (252) T cd04241 2 IILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHEAML 79 (252) T ss_pred EEEEECHHHEECCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99996578704897656511999999999999867--9988999895487699998713446874122888999999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----HHHHHCCHHHHCCCCCCCCC----CCCCC--CCCHHHHHHHHHH Q ss_conf 99999999997618864113400100245665----43210000110011111246----55677--7621578888864 Q gi|254780777|r 86 INALALDLALRKINVPTVILSSIFMPQVCEVF----SCRNAVSYLSQGKVVIFSGG----TGNAF--LTTDSAAALRASE 155 (242) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~D~~a~~ia~~ 155 (242) T Consensus 80 ~l~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~g~IPIin~~~v~~~~~~~~i~~~D~lAa~vA~~ 159 (252) T cd04241 80 ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKA 159 (252) T ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCEEECCHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999999769963520404444431784103178999999987964696687652477742224373999999998 Q ss_pred HCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH------------CCCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 164466514754351234322344444444115999985------------59981409999999974996999518985 Q gi|254780777|r 156 IGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE------------KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 (242) Q Consensus 156 ~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~------------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~ 223 (242) T Consensus 160 l~Ad~LI~lTDVdGvy~~~p---~~a~~i~~i~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gi~v~I~~G~~~ 236 (252) T cd04241 160 LKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKP 236 (252) T ss_pred HCCCEEEEEECCCEEECCCC---CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 38786999956874646999---998386450732499998736877787627739999999999978994999899997 Q ss_pred CHHHHHHCCCCCCCEE Q ss_conf 4799997799878246 Q gi|254780777|r 224 GGIWGGLSGIGRSTII 239 (242) Q Consensus 224 ~~i~~~l~Ge~~GT~I 239 (242) T Consensus 237 ~~i~~~l~g~~vGT~I 252 (252) T cd04241 237 ENLYRALLGNFIGTRI 252 (252) T ss_pred CHHHHHHCCCCCCCCC T ss_conf 6799997799998999 |
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
>PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=9.2e-36 Score=240.15 Aligned_cols=219 Identities=21% Similarity=0.240 Sum_probs=162.8 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC---CC-------------- Q ss_conf 9999940036853887770899999999999999976990999823654--1023344203---77-------------- Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE---NY-------------- 68 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~---~~-------------- 68 (242) T Consensus 2 ~iV~KFGGTSva~-------~~~i~~v~~iI~~~~~~~~~~vVVvSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (466) T PRK06291 2 RLVMKFGGTSVGD-------GERIRHVAKLVKKYREEGNEVVVVVSAMTGVTDRLLEIAEQALDVGDIAKVNDFIAELRE 74 (466) T ss_pred CEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 7899738423798-------999999999987677658989999679999789999999998747787889999999999 Q ss_pred ----------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf ----------------------------------------7754024678888898999999999997618864113400 Q gi|254780777|r 69 ----------------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSI 108 (242) Q Consensus 69 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (242) T Consensus 75 ~h~~~~~~l~~~~~~~~e~~~~l~~~~~~l~~~l~~~~~~~~~s~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~ 154 (466) T PRK06291 75 RHEIAIEEAIEAPDIRVEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIPSLHLTGG 154 (466) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH T ss_conf 99999998502755689999999999999999876665530168177889986899999999999999679984998868 Q ss_pred HHHHH-------------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCC Q ss_conf 10024-------------5665432100001100111112465---------5677762157888886416446651475 Q gi|254780777|r 109 FMPQV-------------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQ 166 (242) Q Consensus 109 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~td 166 (242) T Consensus 155 ~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~vv~GFig~~~~G~~ttLGRGGSD~TAa~lA~~l~A~~~~IwTD 234 (466) T PRK06291 155 EAGIITDDNFGNARPLPKTYERIKERLGPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTD 234 (466) T ss_pred HCEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 89177147876511553306889998877740483689736104889997787079961899999999578869999405 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 43512343223444444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 235 V~Gi~taDPriV~~A~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~IPi~I~nt~~P---------~~~GT~I~~~ 304 (466) T PRK06291 235 VDGVMTADPRIVPEARTIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNP---------EFPGTLITSE 304 (466) T ss_pred CCCEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC---------CCCCEEEECC T ss_conf 673471699878777543745999999999758764567789999980993899826898---------9997289647 |
|
>KOG1154 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=4.3e-36 Score=242.19 Aligned_cols=239 Identities=17% Similarity=0.180 Sum_probs=181.0 Q ss_pred CCCCC-EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCC--------- Q ss_conf 68882-49999940036853887770899999999999999976990999823654102334420377775--------- Q gi|254780777|r 2 SDFPY-KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLC--------- 71 (242) Q Consensus 2 ~~~~~-KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~--------- 71 (242) T Consensus 4 ~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~ 83 (285) T KOG1154 4 AFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQ 83 (285) T ss_pred HHCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCC T ss_conf 01020049999814468877987540478999999999999856855999923525550777510203435678752675 Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHCCHHHHCCCCCCCCCC-----CCCC Q ss_conf -4024678888898999999999997618864113400100245665432---100001100111112465-----5677 Q gi|254780777|r 72 -ERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR---NAVSYLSQGKVVIFSGGT-----GNAF 142 (242) Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~ 142 (242) T Consensus 84 ~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~~AQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~ 163 (285) T KOG1154 84 SELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPF 163 (285) T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC T ss_conf 41146788887275218999999999837530035541643220899988999999998579244543788647763246 Q ss_pred CC---CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-----------HHCCCCCCCHHHHHHH Q ss_conf 76---215788888641644665147543512343223444444441159999-----------8559981409999999 Q gi|254780777|r 143 LT---TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF-----------IEKGLKVMDCASVVLA 208 (242) Q Consensus 143 ~~---~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~-----------l~~G~~v~~~~A~~~a 208 (242) T Consensus 164 ~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PP-d~~~~~li~~~~~~~~~v~~tfG~~S~vGtGGM~tKv~AA~~A 242 (285) T KOG1154 164 GDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPP-DADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNA 242 (285) T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 888765179999998742677999852561335999-8675334421046778876446666765767611558888777 Q ss_pred HHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 974996999518985479999779987824668 Q gi|254780777|r 209 RDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 209 ~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 243 ~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~ 275 (285) T KOG1154 243 LNAGVSVIITNGDAPENITDIVEGKKVGTFFEQ 275 (285) T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 607914999479866778988645112014330 |
|
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
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Probab=100.00 E-value=2.5e-35 Score=237.51 Aligned_cols=222 Identities=24% Similarity=0.309 Sum_probs=170.1 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCC-----CCCCCCHHHHHHHHHHH Q ss_conf 9994003685388777089999999999999997699099982365410233-44203-----77775402467888889 Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAE-----NYLLCERSTVDSMGMLS 83 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~ 83 (242) T Consensus 1 ViK~GGssl~~-------~~~~~~~~~~i~~l~~~g~~~vvV~sa~~~it~~l~~~~~~~~~~~~~~~t~~~~~~i~~~g 73 (248) T cd02115 1 VIKFGGSSVSS-------EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248) T ss_pred CEEECHHHCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 99889136069-------99999999999999978999899969844532999986535433136789989999999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHHHHHCCHHHHCCCCCCCCC--------CCCCCCCCH Q ss_conf 8999999999997618864113400100245---------66543210000110011111246--------556777621 Q gi|254780777|r 84 TVINALALDLALRKINVPTVILSSIFMPQVC---------EVFSCRNAVSYLSQGKVVIFSGG--------TGNAFLTTD 146 (242) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D 146 (242) T Consensus 74 ~~~~~~~l~~~L~~~g~~a~~l~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~ipVi~g~~~~~~~~~~~l~~~~sD 153 (248) T cd02115 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD 153 (248) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCC T ss_conf 99999999999985699816986553233136644432102268999998774167668136345556777633078878 Q ss_pred HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 578888864164466514754351234322344444444115999985---59981409999999974996999518985 Q gi|254780777|r 147 SAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 (242) Q Consensus 147 ~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~ 223 (242) T Consensus 154 ~~Aa~lA~~l~A~~lii~TDV~Gv~~~dp~~~~~a~~i~~ls~~ea~el~~~G~~v~~~~a~~~a~~~gi~v~I~n~~~~ 233 (248) T cd02115 154 STAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP 233 (248) T ss_pred HHHHHHHHHHCCCHHHHEECCCCCEECCCCCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 99999999949665531045786161899868867588653899999998559967489999999987997999139997 Q ss_pred CHHHHHHCCCCCCCEE Q ss_conf 4799997799878246 Q gi|254780777|r 224 GGIWGGLSGIGRSTII 239 (242) Q Consensus 224 ~~i~~~l~Ge~~GT~I 239 (242) T Consensus 234 ~~l-elf~~~~~GTlI 248 (248) T cd02115 234 GAL-ALFTPDGGGTLI 248 (248) T ss_pred CHH-HHCCCCCCCCCC T ss_conf 533-411799996819 |
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=1.4e-34 Score=232.80 Aligned_cols=225 Identities=18% Similarity=0.135 Sum_probs=155.3 Q ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCC--HHHHHHHCCC----------- Q ss_conf 68882499999400368538877708999999999999999-769909998236541--0233442037----------- Q gi|254780777|r 2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVY-AKGIEIGIVVGGGNI--FRGSQVVAEN----------- 67 (242) Q Consensus 2 ~~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~-~~g~~vviV~sg~~~--~~~~~~~~~~----------- 67 (242) T Consensus 3 ~~~~~~wVV~KFGGTSVas-------~~~~~~Va~iI~~~~~~~g~rvvVVvSAm~gvTn~L~~la~~a~~~~~~l~~i~ 75 (865) T PRK08961 3 SPSADRWVVLKFGGTSVSR-------RHRWDTIAKLARKRLNETGGRVLVVVSALSGVTNELTAIADGAADSASRVAALE 75 (865) T ss_pred CCCCCCEEEECCCCCCCCC-------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH T ss_conf 8888987998628466898-------999999999999999850998899985999863899999986421056788999 Q ss_pred ---------CCC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf ---------777------------------------54024678888898999999999997618864113400100245 Q gi|254780777|r 68 ---------YLL------------------------CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC 114 (242) Q Consensus 68 ---------~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (242) T Consensus 76 ~~h~~i~~eL~~~~~~~l~~~l~~L~~ll~~i~~~~~s~~~~d~ilS~GE~lSt~l~a~~L~~~Gi~a~~lDar~~l~t~ 155 (865) T PRK08961 76 QRHREFLAELELDAQAVLANRLAALQALLTDARAATRALDWQAEVLGQGELLSSRLGAAYLHASGLDMGWLDAREWLTAL 155 (865) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHCC T ss_conf 99999999741005678999999999998666640578356345861737999999999999679981785689960014 Q ss_pred ----------HH---HHHHH-----HCCHH-HHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCC Q ss_conf ----------66---54321-----00001-10011111246---------55677762157888886416446651475 Q gi|254780777|r 115 ----------EV---FSCRN-----AVSYL-SQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQ 166 (242) Q Consensus 115 ----------~~---~~~~~-----~~~~~-~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~td 166 (242) T Consensus 156 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~vvVtqGFiG~~~~G~tTTLGRGGSDySAallAaaL~A~~veIWTD 235 (865) T PRK08961 156 PPQPNQSEWSQRLSVSCQWQSDAGWRARFAAQPAQVLITQGFIARHADGGTAILGRGGSDTSAAYFGALLGAARVEIWTD 235 (865) T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 67676430344433333330257889887505982799518335169998777079855899999999749988999858 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 43512343223444444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 236 VdGI~TaDPRiVp~Ar~I~~LSy~EA~ELA~fGAKVLHP~Ti~Pa~~~~IPv~VknT~~P---------e~~GT~I~~~ 305 (865) T PRK08961 236 VPGMFSANPKEVPDARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERP---------DLSGTSIDGN 305 (865) T ss_pred CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCCEEECC T ss_conf 987866899878886587813899999999768752486667999976996798178998---------9997278489 |
|
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
---|
Probab=100.00 E-value=4.3e-34 Score=229.86 Aligned_cols=216 Identities=21% Similarity=0.255 Sum_probs=157.1 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC--HHHHHHHCC---C--------------- Q ss_conf 99999400368538877708999999999999999769909998236541--023344203---7--------------- Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI--FRGSQVVAE---N--------------- 67 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~--~~~~~~~~~---~--------------- 67 (242) T Consensus 1 riV~KFGGtSva~-------~~~i~~v~~II~~~~-~~~~~vVVVSA~~gvTn~L~~~~~~a~~~~~~~~~~~~~~i~~~ 72 (298) T cd04244 1 RLVMKFGGTSVGS-------AERIRHVADLVGTYA-EGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR 72 (298) T ss_pred CEEEEECCCCCCC-------HHHHHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9579849101189-------999999999985546-69998999779999889999999998526767899999999999 Q ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf -------------------------------------7775402467888889899999999999761886411340010 Q gi|254780777|r 68 -------------------------------------YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFM 110 (242) Q Consensus 68 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (242) T Consensus 73 h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~~e~s~~~~D~ils~GE~lSa~l~a~~L~~~Gi~a~~~d~~~~ 152 (298) T cd04244 73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA 152 (298) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHC T ss_conf 99999985365768999999999999999999877653117868899999878899999999999967999799547987 Q ss_pred HHHHH-------------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCC Q ss_conf 02456-------------65432100001100111112465---------567776215788888641644665147543 Q gi|254780777|r 111 PQVCE-------------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVD 168 (242) Q Consensus 111 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvd 168 (242) T Consensus 153 ~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDyTAailA~~l~A~~~~IwtDV~ 232 (298) T cd04244 153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298) T ss_pred CEECCCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 55047876540033521999999988875059289993825558987665558994789999999972887899943988 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 512343223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 169 GVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 169 Giyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 233 Gi~taDPr~v~~a~~i~~lsy~EA~ELa~~GakVlHP~ti~p~~~~~IPi~Iknt~~p---------~~~GT~Is 298 (298) T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP---------EAPGTLIT 298 (298) T ss_pred CEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC T ss_conf 3260799768887574732899999999679740599999999987996899389998---------99981559 |
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
---|
Probab=100.00 E-value=8e-34 Score=228.18 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=157.1 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC--------------------- Q ss_conf 999940036853887770899999999999999976990999823654--102334420--------------------- Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA--------------------- 65 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~--------------------- 65 (242) T Consensus 2 iV~KFGGTSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~ 74 (295) T cd04259 2 VVLKFGGTSVSS-------RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNL 74 (295) T ss_pred EEEEECHHCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 899768010587-------9999999999998874799989997999998368999999875364466999999999999 Q ss_pred --------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---- Q ss_conf --------------------------37777540246788888989999999999976188641134001002456---- Q gi|254780777|r 66 --------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCE---- 115 (242) Q Consensus 66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 115 (242) T Consensus 75 ~~~l~~~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~~~~ 154 (295) T cd04259 75 AEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGG 154 (295) T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCCCCC T ss_conf 99852147789999999999999876640479888999999998999999999999967998379648992000467675 Q ss_pred -----------HHH--HHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC Q ss_conf -----------654--32100001100111112465---------56777621578888864164466514754351234 Q gi|254780777|r 116 -----------VFS--CRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242) Q Consensus 116 -----------~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242) T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~ta 234 (295) T cd04259 155 ETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTA 234 (295) T ss_pred CCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC T ss_conf 31123443565641549899875149859996784345699987772589730589999997499879999777767568 Q ss_pred CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 3223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 235 DPr~v~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~p---------~~~GT~Is 295 (295) T cd04259 235 NPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT 295 (295) T ss_pred CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC T ss_conf 98768888465733899999999679841689999999984991899289999---------99982669 |
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
>PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=4.6e-34 Score=229.66 Aligned_cols=216 Identities=18% Similarity=0.138 Sum_probs=150.4 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHC------------------ Q ss_conf 24999994003685388777089999999999999997699099982365--4102334420------------------ Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVA------------------ 65 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~------------------ 65 (242) T Consensus 1 M~~iV~KFGGtSv~~-------~e~i~~va~ii~~----~~~~~vVVSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~~h~ 69 (440) T PRK05925 1 MAPLVYKFGGTSLGT-------AESIRRVCDIICK----EKPSFVVVSAVAGVTDLLEEFCRVSKGKREQITEKIREKHE 69 (440) T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 986999379623389-------9999999999971----59978999699997089999987620107899999999999 Q ss_pred -----C-----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-------H--- Q ss_conf -----3-----------------7777540246788888989999999999976188641134001002-------4--- Q gi|254780777|r 66 -----E-----------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ-------V--- 113 (242) Q Consensus 66 -----~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--- 113 (242) T Consensus 70 ~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ils~GE~~Sa~lla~~l~~~g~~a~~~da~~~i~td~~~~~a~~~ 149 (440) T PRK05925 70 EIAKELGIEFSLSPWWERLEHFEDKEEISSEDQARILAIGEDISASLICAYCCTNVLPLEFLEARQVILTDDQYLRATPD 149 (440) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCCC T ss_conf 99987254212468999999876404488477888988729999999999999679982884303289826844330335 Q ss_pred HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5665432100001100111112465---------5677762157888886416446651475435123432234444444 Q gi|254780777|r 114 CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF 184 (242) Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i 184 (242) T Consensus 150 ~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~la~al~A~~~~IwTDV~Gv~taDPriV~~A~~i 229 (440) T PRK05925 150 LALMQTNWHELNLQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLI 229 (440) T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCC T ss_conf 88888889987522796899616300189997776169973089999999617849998316573374799868888566 Q ss_pred CCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 41159999855---9981409999999974996999518985479999779987824668 Q gi|254780777|r 185 DSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 185 ~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 230 ~~lsy~Ea~ELa~~GAkVlHprtv~pa~~~~Ipi~i~nt~~p---------~~~GT~I~~ 280 (440) T PRK05925 230 PELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDV---------TKGGTWIYA 280 (440) T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEEE T ss_conf 630899999999769640489999999983995899678999---------999538985 |
|
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
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Probab=100.00 E-value=6.5e-34 Score=228.73 Aligned_cols=202 Identities=26% Similarity=0.290 Sum_probs=155.4 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 999940036853887770899999999999999976990999823654--102334420377775402467888889899 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242) T Consensus 2 ~V~KFGGtSv~~-------~~~i~~v~~ii~~~-~~~~~~vVVvSA~~g~Td~L~~-------------~a~ils~GE~l 60 (227) T cd04234 2 VVQKFGGTSVAS-------AERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIE-------------LALLLSFGERL 60 (227) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHH-------------HHHHHHHHHHH T ss_conf 899678301799-------99999999999865-4389889997388432899999-------------99999299999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----------HHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHH Q ss_conf 999999999761886411340010024566----------543210000110011111246---------5567776215 Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQVCEV----------FSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDS 147 (242) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~ 147 (242) T Consensus 61 Sa~lla~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~Vv~GF~g~~~~G~~tTLGRGGSD~ 140 (227) T cd04234 61 SARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDY 140 (227) T ss_pred HHHHHHHHHHHCCCCEEEECHHHCEEECCCCCCCEEEHHHCHHHHHHHHHHCCCEEEECCEEEECCCCCEEEECCCCHHH T ss_conf 99999999997899719964157206416876520645428999999997389679962604540588468838885678 Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 788888641644665147543512343223444444441159999855---99814099999999749969995189854 Q gi|254780777|r 148 AAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPG 224 (242) Q Consensus 148 ~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~ 224 (242) T Consensus 141 TA~~lA~~l~A~~~~I~TDVdGi~taDPr~v~~A~~i~~lsy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~i~nt~~p- 219 (227) T cd04234 141 SAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP- 219 (227) T ss_pred HHHHHHHHHCCHHHEEEECCCEEECCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC- T ss_conf 9999999818602222126870472799747886240441999999999779741699999999986983999289999- Q ss_pred HHHHHHCCCCCCCEEC Q ss_conf 7999977998782466 Q gi|254780777|r 225 GIWGGLSGIGRSTIIS 240 (242) Q Consensus 225 ~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 220 --------~~~GT~Is 227 (227) T cd04234 220 --------EAPGTLIT 227 (227) T ss_pred --------CCCCEEEC T ss_conf --------99981769 |
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=7.3e-34 Score=228.41 Aligned_cols=216 Identities=21% Similarity=0.259 Sum_probs=153.9 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHC---CCC---------------- Q ss_conf 9994003685388777089999999999999997699099982365--4102334420---377---------------- Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVA---ENY---------------- 68 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~---~~~---------------- 68 (242) T Consensus 3 V~KFGGTSva~-------ae~i~~Va~II~~~~~~~-~vvVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~l~~i~~~h~~~ 74 (817) T PRK09436 3 VLKFGGTSLAN-------AERFLRVADIIESNARQE-QVAVVLSAPAKVTNHLVAMAEKAAGGQDYLPNLSDAERIFAEL 74 (817) T ss_pred EEEECCCCCCC-------HHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 88757156789-------999999999997534389-9899983999868999999998854886789999999999999 Q ss_pred -------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH Q ss_conf -------------------------------------7754024678888898999999999997618864113400100 Q gi|254780777|r 69 -------------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMP 111 (242) Q Consensus 69 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (242) T Consensus 75 ~~~l~~~~~~~~~~~l~~~l~~~~~~L~~~l~gi~ll~e~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lDar~~i 154 (817) T PRK09436 75 LRGLAAALPGFDLAQLKAKLDQEFAELKDLLHGISLLGECPDKVNAAIISRGERLSIAIMSAVLEARGHDATVIDPRELL 154 (817) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHE T ss_conf 99986433420257899999999999999987665530388577789975869999999999999689980997748907 Q ss_pred HH----------HHHHHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCC Q ss_conf 24----------566543210000110011111246---------55677762157888886416446651475435123 Q gi|254780777|r 112 QV----------CEVFSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172 (242) Q Consensus 112 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt 172 (242) T Consensus 155 ~td~~~~~a~vd~~~s~~~i~~~~~~~~~i~Vv~GFig~~~~G~~tTLGRGGSDyTAailAa~L~A~~~eIwTDVdGi~T 234 (817) T PRK09436 155 LADGHYLESTVDIAESTRRIAASFIPADHVVLMPGFTAGNEKGELVTLGRNGSDYSAAVLAACLDADCCEIWTDVDGVYT 234 (817) T ss_pred EECCCCCCEEECHHHHHHHHHHHHCCCCCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEE T ss_conf 83587776556667649999986345797899347112079998777069861789999999719866999846773270 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 43223444444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 173 ADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 173 ~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 235 aDPr~V~~A~~I~~lSY~EA~ELA~fGAkVLHP~Ti~P~~~~~IPi~IkNTf~P---------~~~GT~I~~~ 298 (817) T PRK09436 235 ADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNP---------QAPGTLIGAE 298 (817) T ss_pred CCCCCCCCCEEEEEECHHHHHHHHHCCCCEECHHHHHHHHHCCCEEEEECCCCC---------CCCCEEEECC T ss_conf 699877666575163699999998479950266778899874965999657788---------9997488425 |
|
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=5.8e-34 Score=229.06 Aligned_cols=220 Identities=19% Similarity=0.124 Sum_probs=152.0 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHCC----------------- Q ss_conf 824999994003685388777089999999999999997699099982365-41023344203----------------- Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG-NIFRGSQVVAE----------------- 66 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~-~~~~~~~~~~~----------------- 66 (242) T Consensus 9 ~m~r~V~KFGGTSVa~-------ae~i~~Va~II~~~~~~-~~vVVVSA~ggvTd~Li~~~~~a~~~~~~~~~~~~~l~~ 80 (810) T PRK09466 9 AMGRQLHKFGGSSLAD-------AKCYRRVAGILAEYSQP-DDLVVVSAAGKTTNQLIKWLKLSQTDRLSAHEVLQTLRR 80 (810) T ss_pred CCCCEEECCCCCCCCC-------HHHHHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 3226897518665689-------99999999999735789-939998499998189999999875386057899999999 Q ss_pred --------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf --------------------------------777754024678888898999999999997618864113400100245 Q gi|254780777|r 67 --------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC 114 (242) Q Consensus 67 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (242) T Consensus 81 ~h~~li~~ll~~~~~~~l~~~l~~~l~~l~~~l~~~~~~~~~d~ils~GE~lSa~Lla~~L~~~Gi~a~~ldar~~i~~d 160 (810) T PRK09466 81 YQQDLIEGLLSAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLLAALLNQQGLAAAWLDARSFLRAE 160 (810) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEEC T ss_conf 99999997506234699999999999999997515688678767733608999999999999679984895679905616 Q ss_pred H--------HHHHHHHCCHHH--HCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCC Q ss_conf 6--------654321000011--0011111246---------55677762157888886416446651475435123432 Q gi|254780777|r 115 E--------VFSCRNAVSYLS--QGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADP 175 (242) Q Consensus 115 ~--------~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP 175 (242) T Consensus 161 ~~~~~~vd~~~s~~~l~~~l~~~~~~i~VvtGFig~~~~G~~tTLGRGGSD~SAailAaaL~A~~~eIwTDVdGV~TADP 240 (810) T PRK09466 161 RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALADVERVTIWSDVAGVYSADP 240 (810) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCEECCCC T ss_conf 78653113666599999999736897699826677469997787058873069999999809977999735673153699 Q ss_pred CCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 23444444441159999855---9981409999999974996999518985479999779987824668 Q gi|254780777|r 176 RVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 176 ~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 241 riV~~A~~I~~iSY~EA~ELA~fGAkVLHPrti~Pa~~~~IPI~IknTf~P---------e~~GTlI~~ 300 (810) T PRK09466 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYTP---------EQGSTRIER 300 (810) T ss_pred CCCCCCEEECEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCC---------CCCCEEEEE T ss_conf 767565111234599999998469986576789999864974999954578---------999659975 |
|
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
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Probab=100.00 E-value=3.5e-33 Score=224.24 Aligned_cols=214 Identities=24% Similarity=0.263 Sum_probs=153.9 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---C------------------ Q ss_conf 99940036853887770899999999999999976990999823654--102334420---3------------------ Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---E------------------ 66 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---~------------------ 66 (242) T Consensus 3 V~KFGGtSv~~-------~~~i~~v~~iI~~~~~~~-~~vVVVSA~ggvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~~ 74 (294) T cd04257 3 VLKFGGTSLAN-------AERIRRVADIILNAAKQE-QVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLD 74 (294) T ss_pred EEEECCCCCCC-------HHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99878111589-------999999999997532489-9899980999867999999999853862689999999999999 Q ss_pred ---------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH Q ss_conf ---------------------------------77775402467888889899999999999761886411340010024 Q gi|254780777|r 67 ---------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV 113 (242) Q Consensus 67 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (242) T Consensus 75 ~i~~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~t 154 (294) T cd04257 75 LITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVT 154 (294) T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEC T ss_conf 99985350457899999999999999999777641569889999999989899999999999977998299533362112 Q ss_pred H----------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC Q ss_conf 5----------665432100001100111112465---------567776215788888641644665147543512343 Q gi|254780777|r 114 C----------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 (242) Q Consensus 114 ~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d 174 (242) T Consensus 155 ~~~~~~a~~~~~~t~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~TAa~ia~~L~A~~v~IwtDV~Gi~taD 234 (294) T cd04257 155 DGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSAD 234 (294) T ss_pred CCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCC T ss_conf 68877535668651999999864179789976952567889751348994889999999972997899942888505279 Q ss_pred CCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 175 PRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 175 P~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 235 Pr~v~~a~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~vrnt~~p---------~~~GT~IS 294 (294) T cd04257 235 PRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP---------EAPGTLIS 294 (294) T ss_pred CCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC T ss_conf 9768898671604899999999679831599999999987993899389998---------99981519 |
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase; InterPro: IPR005766 delta l-pyrroline-5-carboxylate synthetase contains a glutamate 5-kinase (ProB, 2 | Back alignment and domain information |
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Probab=100.00 E-value=1.1e-34 Score=233.41 Aligned_cols=237 Identities=19% Similarity=0.254 Sum_probs=177.4 Q ss_pred CCCC-CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHH----HHC---------- Q ss_conf 6888-249999940036853887770899999999999999976990999823654-102334----420---------- Q gi|254780777|r 2 SDFP-YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN-IFRGSQ----VVA---------- 65 (242) Q Consensus 2 ~~~~-~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~-~~~~~~----~~~---------- 65 (242) T Consensus 2 a~~K~~KRiVVK~G~AVVTr~d~~GLALGRL~si~EQl~~L~~~G~E~~LVtSGAV~~G~QRLR~~~L~~~S~~~~~~~~ 81 (738) T TIGR01092 2 AFLKDVKRIVVKVGTAVVTRGDGRGLALGRLGSIVEQLSELNSDGYEVILVTSGAVALGRQRLRYRKLVNSSFADLQKPQ 81 (738) T ss_pred CCCCCCCEEEEEECCEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCH T ss_conf 64335547899825457877898401456789999999986028928999814412304046899999999999862420 Q ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHCCHHHHCCCCCCCC Q ss_conf ------3777754024678888898999999999997618864113400100245665432---1000011001111124 Q gi|254780777|r 66 ------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR---NAVSYLSQGKVVIFSG 136 (242) Q Consensus 66 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 136 (242) T Consensus 82 qnqlke~ai~~L~~~ACA---a~GQsgLMAlYe~~F~Q~~~~aAQ~LVT~~dF~D~~~R~~L~~T~~~lL~~~vvPv~N~ 158 (738) T TIGR01092 82 QNQLKEMAIVELDGKACA---AVGQSGLMALYETMFTQLDITAAQLLVTDLDFRDEQFRRQLNETVKELLRMKVVPVLNE 158 (738) T ss_pred HHHHHHHHHHHCCCCHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEC T ss_conf 233444212101331100---10413689999998658988888876315556686777779999999852303356517 Q ss_pred CC-------------C---CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH--------- Q ss_conf 65-------------5---6777621578888864164466514754351234322344444444115999--------- Q gi|254780777|r 137 GT-------------G---NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQ--------- 191 (242) Q Consensus 137 ~~-------------~---~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e--------- 191 (242) T Consensus 159 NDAv~~~~~P~~D~~Ginvis~~DNDSLAA~LalElK~DLLIlLSDVeGLy~~PP-s~~~~KLI~~f~~~~~Q~~iTFG~ 237 (738) T TIGR01092 159 NDAVSTRKAPYSDSQGINVISFWDNDSLAALLALELKADLLILLSDVEGLYDGPP-SDDDSKLIDTFVKEKHQDEITFGE 237 (738) T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCC-CCCCCCEEEEECCCCCCCCEECCC T ss_conf 8754775477543466058998336479999998774404020103022348511-378762688730675456010365 Q ss_pred --HHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCH----HHHHHCCCCCCCEECCC Q ss_conf --9855998140999999997499699951898547----99997799878246689 Q gi|254780777|r 192 --FIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGG----IWGGLSGIGRSTIISGE 242 (242) Q Consensus 192 --~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~----i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 238 KSrlG~GGM~AKVKAA~~A~~gG~~ViIa~G~~~~~sGhvI~~v~~G~~VGTlF~~~ 294 (738) T TIGR01092 238 KSRLGRGGMTAKVKAAVYAAYGGVPVIIASGTAAKNSGHVITKVVEGKKVGTLFHED 294 (738) T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCEEECCEECC T ss_conf 222368850278999999974891699816856533653322120573220010035 |
7.2.11 from EC) region followed by a gamma-glutamyl phosphate reductase (ProA, 1.2.1.41 from EC) region and catalyses the first and second steps in proline biosynthesis.; GO: 0003824 catalytic activity, 0006561 proline biosynthetic process. |
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
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Probab=100.00 E-value=6.1e-33 Score=222.74 Aligned_cols=216 Identities=21% Similarity=0.230 Sum_probs=151.4 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--------CHHHHHHHC---CC---------- Q ss_conf 999940036853887770899999999999999976990999823654--------102334420---37---------- Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--------IFRGSQVVA---EN---------- 67 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--------~~~~~~~~~---~~---------- 67 (242) T Consensus 3 iV~KFGGTSva~---------~~~~~~~~I~~~~~~~~~vvVVvSA~~~~~~~~g~T~~L~~~~~~a~~~~~~~~~~~~~ 73 (306) T cd04247 3 VVQKFGGTSVGK---------FPDNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQEKAFHDIVE 73 (306) T ss_pred EEEEECHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 999779140887---------99999999987762799889998899798775686999999999887445367999999 Q ss_pred -------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf -------------------------------------------7775402467888889899999999999761886411 Q gi|254780777|r 68 -------------------------------------------YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVI 104 (242) Q Consensus 68 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (242) T Consensus 74 ~i~~~h~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~l~~~~~l~e~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~ 153 (306) T cd04247 74 DIRSDHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEY 153 (306) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 99999999999973087889999999999999999999988761448878888998212789999999999977999499 Q ss_pred CCCCHHHHHH------H----HHHHHHHCCHH--HHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf 3400100245------6----65432100001--100111112465---------5677762157888886416446651 Q gi|254780777|r 105 LSSIFMPQVC------E----VFSCRNAVSYL--SQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILK 163 (242) Q Consensus 105 ~~~~~~~~~~------~----~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i 163 (242) T Consensus 154 lDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~tTLGRgGSDySAaila~~l~A~~v~I 233 (306) T cd04247 154 VDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306) T ss_pred ECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 64899513667635455056899999999987741697489604125469998776068970799999999769778999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 47543512343223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 164 GTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 164 ~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 234 wTDV~Gi~taDPr~V~~A~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~IPi~Irnt~~P---------~~~GT~I~ 304 (306) T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENP---------RGEGTVIY 304 (306) T ss_pred EECCCCCCCCCCCCCCCCEECCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCC---------CCCCCEEC T ss_conf 977875454798757898365721899999999679731598999999987994898189998---------99973656 Q ss_pred CC Q ss_conf 89 Q gi|254780777|r 241 GE 242 (242) Q Consensus 241 ~~ 242 (242) T Consensus 305 ~d 306 (306) T cd04247 305 PD 306 (306) T ss_pred CC T ss_conf 89 |
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
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Probab=100.00 E-value=1.2e-32 Score=221.01 Aligned_cols=213 Identities=22% Similarity=0.219 Sum_probs=152.4 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC-------------------- Q ss_conf 999940036853887770899999999999999976990999823654--1023344203-------------------- Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE-------------------- 66 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~-------------------- 66 (242) T Consensus 2 ~V~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~i~~~h 71 (292) T cd04258 2 VVAKFGGTSVAD-------YAAMLRCAAIVKS---DASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAIH 71 (292) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 899578654488-------9999999999975---899809999489997499999999874477166899999999999 Q ss_pred --------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf --------------------------------777754024678888898999999999997618864113400100245 Q gi|254780777|r 67 --------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC 114 (242) Q Consensus 67 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (242) T Consensus 72 ~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~~da~~~i~td 151 (292) T cd04258 72 FAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD 151 (292) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEEC T ss_conf 99998724738899999999999999986554214688889999988888999999999999779985895657905746 Q ss_pred ------------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC Q ss_conf ------------665432100001100111112465---------56777621578888864164466514754351234 Q gi|254780777|r 115 ------------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242) Q Consensus 115 ------------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242) T Consensus 152 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRGGSDyTA~~la~~l~A~~v~iwtDV~Gi~ta 231 (292) T cd04258 152 SRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231 (292) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC T ss_conf 86653235388889999999865337989993580543799977753789616899999997699889999678878758 Q ss_pred CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 3223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 232 DPr~V~~A~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~I~nt~~p---------~~~GT~Is 292 (292) T cd04258 232 DPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP---------EAGGTLIT 292 (292) T ss_pred CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC T ss_conf 99878987674836999999999779731699999999986994899378998---------99982549 |
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
>PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=8.1e-33 Score=221.98 Aligned_cols=215 Identities=22% Similarity=0.225 Sum_probs=150.5 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCC------------------ Q ss_conf 99994003685388777089999999999999997699099982365--4102334420377------------------ Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENY------------------ 68 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~------------------ 68 (242) T Consensus 2 vV~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~a~~~~~~~~~~~~~~~i~~~h~~ 71 (447) T PRK09084 2 VVAKFGGTSVAD-------FDAMNRSADIVLS---NPNTRLVVLSASSGVTNLLVALAEGAEPGDERFALLDEIRQIQYA 71 (447) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 899478556798-------9999999999972---799829999189996589999998754641389999999999999 Q ss_pred ------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---- Q ss_conf ------------------------------7754024678888898999999999997618864113400100245---- Q gi|254780777|r 69 ------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC---- 114 (242) Q Consensus 69 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 114 (242) T Consensus 72 ~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~D~lls~GE~lSa~lla~~L~~~G~~a~~ld~~~~i~td~~~~ 151 (447) T PRK09084 72 ILDRLRDPNVVREEIERLLENITVLAEAASLATSLALTDELVSHGELMSTLLFVEALRERGVQAEWFDVRKVMRTDDRFG 151 (447) T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEECCCCC T ss_conf 99873361879999999999999999863204774189999974679999999999996799838817789467668666 Q ss_pred --------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC Q ss_conf --------665432100001100111112465---------567776215788888641644665147543512343223 Q gi|254780777|r 115 --------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177 (242) Q Consensus 115 --------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~ 177 (242) T Consensus 152 ~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~TAa~la~~l~A~~~~IwtDV~Gi~taDPr~ 231 (447) T PRK09084 152 RAEPDVAAIAELAQEQLLPLLEEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRI 231 (447) T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEECCCCC T ss_conf 51447899999999998774369868950045766999777617996068999999966984999961778336069876 Q ss_pred CCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 444444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 178 HASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 178 ~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 232 V~~A~~i~~lsy~Ea~ELa~~GAkVlHp~av~pa~~~~IPi~I~nt~~P---------~~~GT~I~~~ 290 (447) T PRK09084 232 VPAARRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDP---------EAGGTWITND 290 (447) T ss_pred CCCCCCCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCEEEEECCCCC---------CCCCEEEECC T ss_conf 7665203634899999999777100175889999981975999557898---------9997089426 |
|
>PRK08373 aspartate kinase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=7.6e-33 Score=222.16 Aligned_cols=215 Identities=17% Similarity=0.187 Sum_probs=149.6 Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC------------------- Q ss_conf 49999940036853887770899999999999999976990999823654--102334420------------------- Q gi|254780777|r 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA------------------- 65 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~------------------- 65 (242) T Consensus 4 km~V~KFGGTSV~~a---------~~~v~~iv~~~~~-~~~vvVVVSAm~gvTd~Li~~a~~~~~~~~~I~~~h~~~a~~ 73 (359) T PRK08373 4 KMIVVKFGGSSVRYD---------FEEAVELVKSLSE-EKEVIVVVSALKGVTDCLLKYANTDKSAALEIEKIHEEFAKE 73 (359) T ss_pred CCEEEEECHHCCHHH---------HHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 879984281013328---------9999999998752-898899967999977999999976577789999999999998 Q ss_pred ----------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH------------HHH Q ss_conf ----------------3777754024678888898999999999997618864113400100245------------665 Q gi|254780777|r 66 ----------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC------------EVF 117 (242) Q Consensus 66 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 117 (242) T Consensus 74 l~~~~~~l~~~l~~l~~~~~~~~~~~~D~Ils~GE~lSa~Lla~~L~~~Gi~a~~lda~~ii~td~~~~~a~vd~~~s~~ 153 (359) T PRK08373 74 HGIDTEILSPYLKELFNRPDFPSEALRDYILSIGERLSAVIFAEGLKILGINGKVVDPWDILEAKGNFGNAFIDIKKSKR 153 (359) T ss_pred HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEEEECCCCCCEEECHHHHHH T ss_conf 36667788999999873113884576666776739999999999999779980997548958853876757754787676 Q ss_pred HHHHHCCHHHHCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 432100001100111112465--------567776215788888641644665147543512343223444444441159 Q gi|254780777|r 118 SCRNAVSYLSQGKVVIFSGGT--------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY 189 (242) Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~ 189 (242) T Consensus 154 ~~~~l~~~l~~~~i~Vv~GFiG~~~G~~TTLGRGGSDyTAailA~~L~A~~v~IwTDVdGI~TADPriV~~Ar~I~~lSY 233 (359) T PRK08373 154 NAKVVYEALERGKIPVVPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYVSY 233 (359) T ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEECCCCCH T ss_conf 69999987327958993674670499264306997168999999974997899975898516089987898748882189 Q ss_pred HHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 190 NQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 190 ~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 234 ~EA~ELA~~GAKVLHPrti~Pakk-~IPi~v~nT~~~----------~~GTLIt~e 278 (359) T PRK08373 234 DEIKIAAKLGMKALHWKAIDLVKG-YIPIIFGRTRDW----------RMGTLISNE 278 (359) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHH-CCCEEEECCCCC----------CCCEEEECC T ss_conf 999999977974168888999980-995799267978----------896478526 |
|
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
---|
Probab=100.00 E-value=1.9e-32 Score=219.65 Aligned_cols=214 Identities=23% Similarity=0.250 Sum_probs=153.8 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC--------------------- Q ss_conf 999940036853887770899999999999999976990999823654--102334420--------------------- Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA--------------------- 65 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~--------------------- 65 (242) T Consensus 2 kV~KFGGtSv~~-------~~~i~~v~~iI~~~--~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~ 72 (293) T cd04243 2 KVLKFGGTSVAS-------AERIRRVADIIKSR--ASSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERHL 72 (293) T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 899878123699-------99999999999837--798959998199886899999999884377578999999999999 Q ss_pred ---------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf ---------------------------------37777540246788888989999999999976188641134001002 Q gi|254780777|r 66 ---------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ 112 (242) Q Consensus 66 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (242) T Consensus 73 ~i~~~L~~~~~~~~~~~~i~~~~~~L~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~ 152 (293) T cd04243 73 DLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLL 152 (293) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEE T ss_conf 99998527154799999999999999999876542257988999999988989999999999997899809975478420 Q ss_pred HH----------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC Q ss_conf 45----------665432100001100111112465---------56777621578888864164466514754351234 Q gi|254780777|r 113 VC----------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242) Q Consensus 113 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242) T Consensus 153 td~~~~~a~~~~~~s~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~sAaila~~l~A~~v~IwtDV~Gi~ta 232 (293) T cd04243 153 TDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTA 232 (293) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEC T ss_conf 26887531007764199999986338959997496612799977872798289999999995699889998378840708 Q ss_pred CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 3223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 233 DPr~v~~a~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~Ipi~i~nt~~p---------~~~GT~Is 293 (293) T cd04243 233 DPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNP---------EAPGTLIS 293 (293) T ss_pred CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC T ss_conf 99878887564810899999999779620599999999986994899379998---------99982659 |
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
>PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=2.9e-33 Score=224.76 Aligned_cols=213 Identities=18% Similarity=0.181 Sum_probs=152.9 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CHHHHHHHC--------------- Q ss_conf 99940036853887770899999999999999976990999823654---------102334420--------------- Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN---------IFRGSQVVA--------------- 65 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~---------~~~~~~~~~--------------- 65 (242) T Consensus 3 V~KFGGtSv~~-------~~~i~~v~~ii~~--~~~~~v-VVVSA~G~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~~i 72 (450) T PRK09034 3 VVKFGGSSLAS-------AEQFKKVLNIVKS--DPERKI-VVVSAPGKRFKEDTKVTDLLILYAEHVLNGEDYDDIFEAI 72 (450) T ss_pred EEEECCCCCCC-------HHHHHHHHHHHHC--CCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99878313899-------9999999999962--789839-9990798876775552699999999986487589999999 Q ss_pred -----------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf -----------------------------377775402467888889899999999999761886411340010024566 Q gi|254780777|r 66 -----------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEV 116 (242) Q Consensus 66 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (242) T Consensus 73 ~~~h~~i~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~~d~~~~~~~~~~ 152 (450) T PRK09034 73 IARYAEIADELGLKDDILEKIAEILEHLANLDKEENGYLLDAFKARGEDLNAKLIAAYLNYEGIDARYVSPKEAGIIVTD 152 (450) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHEEEEECC T ss_conf 99999999873566779999999999998602457467787885188999999999999968997399873450278526 Q ss_pred ---------HHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCC Q ss_conf ---------543210000110011111246---------55677762157888886416446651475435123432234 Q gi|254780777|r 117 ---------FSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVH 178 (242) Q Consensus 117 ---------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~ 178 (242) T Consensus 153 ~~~~a~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~tTLGRGGSD~TAa~la~~l~A~~~~IwTDVdGi~taDPr~V 232 (450) T PRK09034 153 EPGGAQILPESYDKLKKLRDSDEKLVIPGFFGVTPDGQIKTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPNIV 232 (450) T ss_pred CCCCCEECHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCC T ss_conf 77761773741999998871798799832788469997776168834899999999719988999854673160698767 Q ss_pred CCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 44444441159999855---9981409999999974996999518985479999779987824668 Q gi|254780777|r 179 ASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 179 ~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 233 ~~A~~i~~lsy~EA~ELa~~GAkVlHP~ti~p~~~~~IPi~I~nt~~P---------~~~GT~I~~ 289 (450) T PRK09034 233 KNPKPIEEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNP---------EDPGTLIVH 289 (450) T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCEEEEEEECCCC---------CCCCEEEEE T ss_conf 876620527899999999758754571314521306548999727999---------999608962 |
|
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
---|
Probab=100.00 E-value=1.8e-32 Score=219.80 Aligned_cols=214 Identities=19% Similarity=0.193 Sum_probs=152.1 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CHHHHHHHC----------- Q ss_conf 249999940036853887770899999999999999976990999823654---------102334420----------- Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN---------IFRGSQVVA----------- 65 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~---------~~~~~~~~~----------- 65 (242) T Consensus 1 Mk--V~KFGGtSv~~-------~~~i~~v~~Ii~~--~~~~~-vVVVSA~g~~tn~~~gvTd~L~~~a~~~~~~~~~~~~ 68 (288) T cd04245 1 MK--VVKFGGSSLAS-------AEQFQKVKAIVKA--DPERK-IVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESI 68 (288) T ss_pred CE--EEEECCCCCCC-------HHHHHHHHHHHHC--CCCCE-EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH T ss_conf 98--99888113589-------9999999999971--78980-9999089888675214799999999987568459999 Q ss_pred ---------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf ---------------------------------37777540246788888989999999999976188641134001002 Q gi|254780777|r 66 ---------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ 112 (242) Q Consensus 66 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (242) T Consensus 69 ~~~i~~~h~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~d~~i 148 (288) T cd04245 69 FEAIVDRYAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGL 148 (288) T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE T ss_conf 99999999999987466477999999999999871446855777687309999999999999996899839950000217 Q ss_pred H---------HHHHHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC Q ss_conf 4---------566543210000110011111246---------5567776215788888641644665147543512343 Q gi|254780777|r 113 V---------CEVFSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 (242) Q Consensus 113 ~---------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d 174 (242) T Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSDySAaiia~~l~A~~v~iwtDV~Gi~taD 228 (288) T cd04245 149 VVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAAN 228 (288) T ss_pred EECCCCCCCEECHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECC T ss_conf 84477653033275699999887059838982577753899764328983899999999975898899954798037379 Q ss_pred CCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 223444444441159999855---998140999999997499699951898547999977998782466 Q gi|254780777|r 175 PRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 175 P~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 229 Pr~V~~A~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~Ipi~irnt~~p---------~~~GT~I~ 288 (288) T cd04245 229 PRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHP---------EAPGTLIV 288 (288) T ss_pred CCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC---------CCCCCEEC T ss_conf 9857798687735999999999679851588999999985980899378999---------99985779 |
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
>COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
---|
Probab=99.98 E-value=1.3e-31 Score=214.64 Aligned_cols=231 Identities=20% Similarity=0.205 Sum_probs=178.3 Q ss_pred EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH Q ss_conf 99994003685388-777089999999999999997699099982365410233442037--777540246788888989 Q gi|254780777|r 9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV 85 (242) Q Consensus 9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (242) T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~am~ 80 (252) T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLAML 80 (252) T ss_pred EEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 899955616525887321118999999999845--995438999458665678899707654446667434399999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHH---HHHHHHHHHCCHHHHCCCCCCCCC------CCCCCCCCHHHHHHHHHHH Q ss_conf 9999999999761886411340010024---566543210000110011111246------5567776215788888641 Q gi|254780777|r 86 INALALDLALRKINVPTVILSSIFMPQV---CEVFSCRNAVSYLSQGKVVIFSGG------TGNAFLTTDSAAALRASEI 156 (242) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~a~~ia~~~ 156 (242) T Consensus 81 ~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l 160 (252) T COG1608 81 ELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKEL 160 (252) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEECCHHHHHHHHHH T ss_conf 99999999998669853222686403317703220299999998769876233346874898548985118999999974 Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHH Q ss_conf 644665147543512343223444444441159999855-------9981409999999974996999518985479999 Q gi|254780777|r 157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGG 229 (242) Q Consensus 157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~ 229 (242) T Consensus 161 ~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~ 240 (252) T COG1608 161 KPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRA 240 (252) T ss_pred CCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH T ss_conf 98779998457823568987486620001443234306867621313399999999998735863899878777789999 Q ss_pred HCCCCCCCEECC Q ss_conf 779987824668 Q gi|254780777|r 230 LSGIGRSTIISG 241 (242) Q Consensus 230 l~Ge~~GT~I~~ 241 (242) T Consensus 241 l~G~~vGT~I~~ 252 (252) T COG1608 241 LRGENVGTRIDG 252 (252) T ss_pred HCCCCCCEEECC T ss_conf 658877548469 |
|
>pfam00696 AA_kinase Amino acid kinase family | Back alignment and domain information |
---|
Probab=99.97 E-value=9.4e-31 Score=209.26 Aligned_cols=206 Identities=25% Similarity=0.263 Sum_probs=144.4 Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHH----HH Q ss_conf 49999940036853887770899999999999999976990999823654102334420377775402467888----88 Q gi|254780777|r 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMG----ML 82 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 82 (242) T Consensus 1 k~iViK~GGs~l~~-------~~~i~~~~~~I~~l~~~g~~vvvV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (230) T pfam00696 1 KRIVIKLGGSSLTD-------EDAIKRIAEEIALLSELGIKVVVVSGGGGFTDKLLAAYGIAEKIGLRVTAGATGLIIEA 73 (230) T ss_pred CEEEEEECHHHCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 90999958567789-------89999999999999968994999979858887999981777657515669999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHH Q ss_conf 98999999999997618864113400100245---665432100001100111112465---------567776215788 Q gi|254780777|r 83 STVINALALDLALRKINVPTVILSSIFMPQVC---EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAA 150 (242) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~ 150 (242) T Consensus 74 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVi~g~~~~~~~~~~~~l~~~~sD~~Aa 153 (230) T pfam00696 74 ALAGLLDIVVSAGERLGARAVALLLSDGGIGAVRLDANDTEAIKELLEEGVVPVITGFGGENDTGETTTLGRGSSDTLAA 153 (230) T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCHHHHH T ss_conf 99999999999999829730132565134551688452599999999769925524764247988723134877108899 Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCC-CCHHHHHHHHHCCCCEEEEE Q ss_conf 888641644665147543512343223444444441159999855-------9981-40999999997499699951 Q gi|254780777|r 151 LRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKV-MDCASVVLARDCSIPIIVFS 219 (242) Q Consensus 151 ~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v-~~~~A~~~a~~~gI~v~I~n 219 (242) T Consensus 154 ~lA~~l~A~~lii~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~i~v~I~n 230 (230) T pfam00696 154 LLAEALGADKLIILTDVDGVYTADPRKVPDAKLIPELSYDEAEELLAAGDGTGGMKVKDPAALKAARRGGIPVVIVN 230 (230) T ss_pred HHHHHCCCCEEEEEECCCCEECCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99985598678986157813637998799873855767999998876597849969999999999997898699949 |
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2. |
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
---|
Probab=99.97 E-value=2.1e-29 Score=200.88 Aligned_cols=221 Identities=19% Similarity=0.207 Sum_probs=166.7 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99994003685388777089999999999999997699099982365410233442037777540246788888989999 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINA 88 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (242) T Consensus 33 ~VvKIGGqsi~DrG-----~~av~Plv~Ei~~~~~~-hk~li~TGgG~RaRHiy~igldLg-mPtGvLa~L~~~vs~QNa 105 (262) T cd04255 33 NVVKIGGQSIIDRG-----AEAVLPLVEEIVALRPE-HKLLILTGGGTRARHVYSIGLDLG-MPTGVLAKLGASVSEQNA 105 (262) T ss_pred EEEEECCEEEECCC-----HHHHHHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH T ss_conf 28998780300373-----34243289999975131-528998367500334312341479-961156776422446479 Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----HHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf 999999976188641134001002456654-----321000011001111124655677762157888886416446651 Q gi|254780777|r 89 LALDLALRKINVPTVILSSIFMPQVCEVFS-----CRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILK 163 (242) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i 163 (242) T Consensus 106 ~ml~~LLa~~G~~~i~~~~~~--~l~~~l~~~~~~v~~g~PPY~~~e~p~--~~g~IPphRTDtGAfLlAe~iGa~~li~ 181 (262) T cd04255 106 EMLATLLAKHGGSKVGHGDLL--QLPTFLKAGRAPVISGMPPYGLWEHPA--EEGRIPPHRTDVGAFLLAEVIGARNLIF 181 (262) T ss_pred HHHHHHHCCCCCEEECCCCHH--HHHHHHHCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 999998431387025787789--999998658710442799975454786--5687899754389999999848753799 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC--CCCCCHHHHHHHHH--CCCCEEEEECCCCCHHHHHHCCCCCCCEE Q ss_conf 475435123432234444444411599998559--98140999999997--49969995189854799997799878246 Q gi|254780777|r 164 GTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG--LKVMDCASVVLARD--CSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 (242) Q Consensus 164 ~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~G--~~v~~~~A~~~a~~--~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I 239 (242) T Consensus 182 vkdVDGvYtaDPk~~~~A~~i~~iS~~Ell~~~L~dlv~er~~l~ll~~a~~i~~VqVvNgl~PGnitrAL~GEhVGTiI 261 (262) T cd04255 182 VKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262) T ss_pred EECCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCEE T ss_conf 96577776799999976534253779999863476430059999999861135517998078853799987268664100 Q ss_pred C Q ss_conf 6 Q gi|254780777|r 240 S 240 (242) Q Consensus 240 ~ 240 (242) T Consensus 262 r 262 (262) T cd04255 262 R 262 (262) T ss_pred C T ss_conf 9 |
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
>PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
---|
Probab=99.90 E-value=1.2e-22 Score=159.35 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=138.9 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHCCCCC------CCCHHHHHHHH Q ss_conf 99999400368538877708999999999999999769909998236541023-344203777------75402467888 Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVAENYL------LCERSTVDSMG 80 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~~~~~------~~~~~~~~~~~ 80 (242) T Consensus 1 TiVIkiGG~~l~~~-------~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvT~~~~l~-~~ 72 (262) T PRK00942 1 TIVIKYGGNAMTDE-------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDKETME-VV 72 (262) T ss_pred CEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-HH T ss_conf 99999885884498-------79999999999999889919999388299999999869972304775466189999-99 Q ss_pred HHHHH-HHHHHHHHHHHHHCCCCCCCCCC--------HHHHH-------------HHHHHHHHHCCHHHHCCCCCCCC-- Q ss_conf 88989-99999999997618864113400--------10024-------------56654321000011001111124-- Q gi|254780777|r 81 MLSTV-INALALDLALRKINVPTVILSSI--------FMPQV-------------CEVFSCRNAVSYLSQGKVVIFSG-- 136 (242) Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-- 136 (242) T Consensus 73 ~~~l~g~i~~~l~~~l~~~g~~avglsg~d~~~v~a~~~~~~~~~~~~d~g~vG~v~~v~~~~I~~ll~~g~IpVispig 152 (262) T PRK00942 73 EMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLVTARKLDENGKEKIIDLGYVGEVEEVNPALLETLLEAGYIPVISPIG 152 (262) T ss_pred HHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECCCC T ss_conf 99981719999999998558742314566787589998644566545667620461666689999998479757962641 Q ss_pred ---CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHH Q ss_conf ---6556777621578888864164466514754351234322344444444115999985-------599814099999 Q gi|254780777|r 137 ---GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVV 206 (242) Q Consensus 137 ---~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~ 206 (242) T Consensus 153 ~~~~G~~~ninaD~~Aa~iA~~l~AdkLi~ltdv~Gv~~~------~g~~i~~i~~~e~~~l~~~~~~~ggM~pKl~aa~ 226 (262) T PRK00942 153 VGEDGETYNVNADTAAGAIAAALGAEKLILLTDVPGVLDD------KGSLISELTAEEAEELIEDGVITGGMIPKVEAAL 226 (262) T ss_pred CCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 8898878557799999999998467949999588761578------8751431069999999865976896099999999 Q ss_pred HHHHCCCC-EEEEECCCCCH-HHHHHCCCCCCCEEC Q ss_conf 99974996-99951898547-999977998782466 Q gi|254780777|r 207 LARDCSIP-IIVFSIHSPGG-IWGGLSGIGRSTIIS 240 (242) Q Consensus 207 ~a~~~gI~-v~I~ng~~~~~-i~~~l~Ge~~GT~I~ 240 (242) T Consensus 227 ~a~~~Gv~rv~I~~g~~~~~ll~elft~~G~GT~i~ 262 (262) T PRK00942 227 EAARSGVRSVHIIDGRVPHSLLLELFTDEGIGTMIV 262 (262) T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCEEC T ss_conf 999819998999369998779999817999852569 |
|
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative; InterPro: IPR011819 This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus | Back alignment and domain information |
---|
Probab=99.90 E-value=3.7e-23 Score=162.42 Aligned_cols=213 Identities=15% Similarity=0.211 Sum_probs=158.3 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHH--------------------------- Q ss_conf 99994003685388777089999999999999997699099982365--4102--------------------------- Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFR--------------------------- 59 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~--------------------------- 59 (242) T Consensus 2 iV~KFGGsSvr~~---------F~eA~~L~~~L~E~-~~v~VVVSALkGiTD~L~~ya~t~D~~~~~~i~~~y~~f~~~~ 71 (341) T TIGR02078 2 IVVKFGGSSVRYD---------FEEALELVKSLSEE-KEVVVVVSALKGITDELIRYANTFDKKAAVKIEEIYVEFAKEL 71 (341) T ss_pred EEEEECCCCHHHH---------HHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC T ss_conf 6898568413666---------89999999985169-8689998534442579998731104688999999999877750 Q ss_pred ----------HHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH------------HHHHHH Q ss_conf ----------3344203777754-02467888889899999999999761886411340010------------024566 Q gi|254780777|r 60 ----------GSQVVAENYLLCE-RSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFM------------PQVCEV 116 (242) Q Consensus 60 ----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 116 (242) T Consensus 72 gvd~~~l~~~l~~~~n~~~dlP~keAL~D~I~S~GE~lSA~ifaeGL~~L~i~g~~v~p~d~~~A~G~FGnafidik~Sk 151 (341) T TIGR02078 72 GVDLNILSPYLKELFNPKPDLPPKEALRDYILSLGELLSAVIFAEGLKLLGINGKVVDPWDLLVAKGEFGNAFIDIKKSK 151 (341) T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHHEEEECCCCCEEEEHHHHH T ss_conf 88622334678876236778781122356677775789999997013531203227652666277436465477464655 Q ss_pred HHHHHHCCHHHHCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 54321000011001111124655--------6777621578888864164466514754351234322344444444115 Q gi|254780777|r 117 FSCRNAVSYLSQGKVVIFSGGTG--------NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188 (242) Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is 188 (242) T Consensus 152 ~~~k~~~~~l~~G~iPvipGF~gnlnGyrvTlGRGGSDYSAvalg~l~~s~~v~IMSdVEGIfTADPKLvPsArLIpY~S 231 (341) T TIGR02078 152 RNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLS 231 (341) T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCCCHHCCCCCC T ss_conf 57778898886583022146206888448986478622799999987512268997345600435866375001033334 Q ss_pred HHHHH---HCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 99998---559981409999999974996999518985479999779987824668 Q gi|254780777|r 189 YNQFI---EKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 189 ~~e~l---~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 232 Y~Ei~iAaK~GMkAl~wkA~~l~~e~~ip~lfGrt~d----------wr~GT~~s~ 277 (341) T TIGR02078 232 YEEILIAAKLGMKALQWKAADLAKEYKIPVLFGRTRD----------WRMGTVVSN 277 (341) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC----------CEEEEEEEC T ss_conf 7799997452057776652000157543587415466----------401267762 |
Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from Escherichia coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~100 amino acids in between.. |
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
---|
Probab=99.90 E-value=1.4e-22 Score=158.79 Aligned_cols=199 Identities=21% Similarity=0.233 Sum_probs=136.9 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99940036853887770899999999999999976990999823654102334420377775402467888889899999 Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL 89 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242) T Consensus 1 VvKiGGSL~~~----------~~~ll~~l~~~--~~~~v~IVpGGG~fAd~vR~~~~~~~-~~d~~aH~mAi~Am~~~a~ 67 (203) T cd04240 1 VVKIGGSLIRE----------AVRLLRWLKTL--SGGGVVIVPGGGPFADVVRRYQERKG-LSDAAAHWMAILAMEQYGY 67 (203) T ss_pred CEEEEEECCCC----------HHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH T ss_conf 97982056466----------89999999983--59978999798089999999999829-9878999999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHCHHHHHHCCC Q ss_conf 9999997618864113400100245665432100001100111112465567---7762157888886416446651475 Q gi|254780777|r 90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNA---FLTTDSAAALRASEIGADVILKGTQ 166 (242) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~a~~ia~~~~ad~l~i~td 166 (242) T Consensus 68 ll~~~~~~~~----~~~~~~---~~~~-~~~~~~~v~lP~~~l~--~~~~lp~sWdvtsDs~a~~~A~~l~a~~li~~~~ 137 (203) T cd04240 68 LLADLEPRLV----ARTLAE---LTDV-LERGKIAILLPYRLLL--DTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTD 137 (203) T ss_pred HHHHHCCHHH----CCCHHH---HHHH-HHCCCCEEEECHHHHC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 9996013101----046477---9999-7338915871158751--5898887877661899999999759885899856 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC-CCCCEE Q ss_conf 4351234322344444444115999985599814099999999749969995189854799997799-878246 Q gi|254780777|r 167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGI-GRSTII 239 (242) Q Consensus 167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge-~~GT~I 239 (242) T Consensus 138 vdGiy~~~------~kl~~~i~~~~l~--~~~~VD~~~~~~~~~~~i~~~VvnG~~p~~i~~~l~g~~~~GT~I 203 (203) T cd04240 138 VDGIYEKD------GKLVNEIAAAELL--GETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203) T ss_pred CCCCCCCC------HHHHHHCCHHHHC--CCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCC T ss_conf 77551875------0554115898864--887410778999997696399987998799999986898798579 |
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
---|
Probab=99.89 E-value=2.3e-22 Score=157.58 Aligned_cols=217 Identities=18% Similarity=0.146 Sum_probs=139.1 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHCCCCC------CCCHHHHHHHHH Q ss_conf 999940036853887770899999999999999976990999823654102334-4203777------754024678888 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ-VVAENYL------LCERSTVDSMGM 81 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~-~~~~~~~------~~~~~~~~~~~~ 81 (242) T Consensus 1 IVIKlGG~~l~d~-------~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvTd~~~l~-~~~ 72 (256) T cd04238 1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETME-IVE 72 (256) T ss_pred CEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHH-HHH T ss_conf 9899786894598-------79999999999999889929999188299999999869983502673146187899-999 Q ss_pred HHH-HHHHHHHHHHHHHHCCCCCCCCCCH--------H-----HH----HHHHHHHHHHCCHHHHCCCCCCCCC-----C Q ss_conf 898-9999999999976188641134001--------0-----02----4566543210000110011111246-----5 Q gi|254780777|r 82 LST-VINALALDLALRKINVPTVILSSIF--------M-----PQ----VCEVFSCRNAVSYLSQGKVVIFSGG-----T 138 (242) Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 138 (242) T Consensus 73 ~~l~g~in~~l~~~l~~~g~~aiglsg~d~~~i~a~~~~~~~~d~g~vG~v~~v~~~~i~~lL~~g~IPVi~pi~~~~~G 152 (256) T cd04238 73 MVLAGKVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG 152 (256) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECEEECCCC T ss_conf 99853389999999997799721214655877999975564434342455443558999999847994476041356888 Q ss_pred CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHC Q ss_conf 56777621578888864164466514754351234322344444444115999985-------59981409999999974 Q gi|254780777|r 139 GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDC 211 (242) Q Consensus 139 ~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~ 211 (242) T Consensus 153 ~~~ninaD~~Aa~lA~~l~AdkLi~ltdv~Gv~~~~------g~~i~~lt~~e~~~l~~~~~~~gGM~~Kl~aa~~a~~~ 226 (256) T cd04238 153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDP------GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG 226 (256) T ss_pred CEEEECHHHHHHHHHHHHCCCCEEEECCCCCEECCC------CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC T ss_conf 689637999999999972801089852888615688------75234127999999997696689539999999999984 Q ss_pred CC-CEEEEECCCCCHHHHHHC-CCCCCCEE Q ss_conf 99-699951898547999977-99878246 Q gi|254780777|r 212 SI-PIIVFSIHSPGGIWGGLS-GIGRSTII 239 (242) Q Consensus 212 gI-~v~I~ng~~~~~i~~~l~-Ge~~GT~I 239 (242) T Consensus 227 Gv~rv~Ii~g~~~~~Ll~eLft~~G~GT~I 256 (256) T cd04238 227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256) T ss_pred CCCEEEEECCCCCCHHHHHHCCCCCCCCCC T ss_conf 999799937999877999973799985879 |
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
>KOG0456 consensus | Back alignment and domain information |
---|
Probab=99.88 E-value=4.8e-22 Score=155.53 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=142.3 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH------HHH----------------- Q ss_conf 999994003685388777089999999999999997699099982365410233------442----------------- Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS------QVV----------------- 64 (242) Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~------~~~----------------- 64 (242) T Consensus 80 ~~V~KFGGsSV~s~-------~~~i~v~--~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIk 150 (559) T KOG0456 80 TCVMKFGGSSVGSA-------ERMIEVA--VLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIK 150 (559) T ss_pred EEEEECCCCCCCCC-------CHHHHHH--HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHH T ss_conf 89994288411334-------0013356--78874687773899971344125453310020001656743478999999 Q ss_pred ------------------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf ------------------------------03777754024678888898999999999997618864113400100245 Q gi|254780777|r 65 ------------------------------AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC 114 (242) Q Consensus 65 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (242) T Consensus 151 e~Hi~ta~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~ 230 (559) T KOG0456 151 ELHIRTAHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFIT 230 (559) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEECCC T ss_conf 98776698854488999999999999999988987615245667654346788999999987328532351143420332 Q ss_pred ----------HHHHHH----HHCCHHHHCCCCCCCCC----------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCC Q ss_conf ----------665432----10000110011111246----------556777621578888864164466514754351 Q gi|254780777|r 115 ----------EVFSCR----NAVSYLSQGKVVIFSGG----------TGNAFLTTDSAAALRASEIGADVILKGTQVDGV 170 (242) Q Consensus 115 ----------~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGi 170 (242) T Consensus 231 ~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv 310 (559) T KOG0456 231 TDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGV 310 (559) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 43334324788878999875243101377663686003367656200035677216689999887181454213234752 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 2343223444444441159999855---99814099999999749969995189854799997799878246689 Q gi|254780777|r 171 YSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 171 yt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 311 ~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP---------~~~GTvI~~d 376 (559) T KOG0456 311 LTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNP---------TAPGTVITPD 376 (559) T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEECCCCC---------CCCCEEECCC T ss_conf 74388647775006865877877877521121056333411306762586337799---------9994286362 |
|
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
---|
Probab=99.87 E-value=5.7e-21 Score=148.93 Aligned_cols=224 Identities=16% Similarity=0.143 Sum_probs=140.6 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCCCC------CCCCHHHHH Q ss_conf 824999994003685388777089999999999999997699099982365410233-4420377------775402467 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAENY------LLCERSTVD 77 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~~~------~~~~~~~~~ 77 (242) T Consensus 13 rgktiVIklGG~~l~d~-------~~~~~~~~dI~~L~~~G~~vVlVHGggpqi~~~l~~~gi~~~~~~G~RvT~~~~l~ 85 (279) T cd04250 13 RGKTVVIKYGGNAMKDE-------ELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETME 85 (279) T ss_pred CCCEEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH T ss_conf 89989999890784697-------79999999999999889929999699679999999869984223774357388899 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCH--------HH---------H----HHHHHHHHHHCCHHHHCCCCCCC Q ss_conf 88888989-999999999976188641134001--------00---------2----45665432100001100111112 Q gi|254780777|r 78 SMGMLSTV-INALALDLALRKINVPTVILSSIF--------MP---------Q----VCEVFSCRNAVSYLSQGKVVIFS 135 (242) Q Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~----~~~~~~~~~~~~~~~~~~~~~~~ 135 (242) T Consensus 86 -iv~~~l~G~vn~~lv~~l~~~g~~avglsg~dg~~i~a~~~~~~~~~~~~D~g~vG~v~~vd~~~i~~ll~~g~IpVIs 164 (279) T cd04250 86 -IVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIA 164 (279) T ss_pred -HHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEC T ss_conf -9999985614699999999739985462266686699997555555556656645665522789999998579748964 Q ss_pred CC----C-CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHH Q ss_conf 46----5-56777621578888864164466514754351234322344444444115999985-------599814099 Q gi|254780777|r 136 GG----T-GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCA 203 (242) Q Consensus 136 ~~----~-~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~ 203 (242) T Consensus 165 plg~~~~G~~~NvnaD~~A~~lA~aL~AdkLi~ltdv~Gv~~~~~~~---~~~i~~lt~~e~~~li~~~~i~ggM~pKl~ 241 (279) T cd04250 165 PVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDP---GSLISEISLKEAEELIADGIISGGMIPKVE 241 (279) T ss_pred CCCCCCCCCEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC---CCCCCCCCHHHHHHHHHCCCCCCCCHHHHH T ss_conf 64168989786688999999999986449499995881110588887---540025899999999975976897499999 Q ss_pred HHHHHHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEE Q ss_conf 9999997499-699951898547999-97799878246 Q gi|254780777|r 204 SVVLARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTII 239 (242) Q Consensus 204 A~~~a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I 239 (242) T Consensus 242 aa~~Al~~GV~rvhIidg~~~~~LL~ELft~~G~GT~I 279 (279) T cd04250 242 ACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279) T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCC T ss_conf 99999984999799946989887999981799986609 |
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260 Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr | Back alignment and domain information |
---|
Probab=99.84 E-value=7.3e-20 Score=142.11 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=161.5 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH--HHHHH-------------------- Q ss_conf 24999994003685388777089999999999999997699099982365410--23344-------------------- Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF--RGSQV-------------------- 63 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~--~~~~~-------------------- 63 (242) T Consensus 1 ~~~~v~kfGGt~~~~-------~~~~~~~~~~~~~~~~~g~~~~vv~sa~~~~td~l~~~~~~~~pg~~~~~~~~~~~~~ 73 (480) T TIGR00656 1 MELIVQKFGGTSVGS-------GERIKNAARIVLKEKEEGHKVVVVVSAMGGVTDALLSLAEGLDPGEGGAKGGDLLGIL 73 (480) T ss_pred CCEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 944787426721254-------2678888878887764077148998615652024665543202322113567889999 Q ss_pred -----H----CCCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHH Q ss_conf -----2----0377------------------77540246788888989999999999976188641134--00100245 Q gi|254780777|r 64 -----V----AENY------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILS--SIFMPQVC 114 (242) Q Consensus 64 -----~----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 114 (242) T Consensus 74 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~Ge~~s~~~~~~~l~~~g~~~~~~~p~g~~~g~~t 153 (480) T TIGR00656 74 RELGLPLRYPEAISDEILELELNKLLLAAAALGEWTPRERDLLVSYGELLSSALLSGALRDLGVKAIWLDPFGGEAGILT 153 (480) T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE T ss_conf 98643331100135567887777788877886421755777776411257899999999852762144143456222232 Q ss_pred H--------------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCC Q ss_conf 6--------------65432100001100111112465---------567776215788888641644665147543512 Q gi|254780777|r 115 E--------------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVY 171 (242) Q Consensus 115 ~--------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiy 171 (242) T Consensus 154 ~~~~~~a~~~~~~~~~~~~~~l~~~l~~g~~~~~~Gf~G~~~~g~~ttlGrGGsd~~a~~l~~~l~a~~~~~~tdv~G~~ 233 (480) T TIGR00656 154 DDNFGNAKIDELATEGLAAERLLPLLEEGIIPVVAGFQGATEEGDTTTLGRGGSDLTAALLGAALKADRVDIYTDVPGVY 233 (480) T ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 45455520002224677888888887549758972333577676444304786237899987521776379974478501 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHH-HHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 343223444444441159999855---9981409999999-974996999518985479999779987824668 Q gi|254780777|r 172 SADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA-RDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 172 t~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a-~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 234 ~~dPr~~~~a~~~~~~~~~e~~~la~~Ga~~l~p~~~~~~d~~~~~~~~~~~~~~~---------~~~gt~~~~ 298 (480) T TIGR00656 234 TTDPRVVEGAKKLPKISYEEALELATLGAKVLHPRTLEPADKEGGVPIEVRSSFDP---------EAEGTLITN 298 (480) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEEEECCCC---------CCCCCEECC T ss_conf 26864245643223323899999975250120321002011013663588624577---------767414304 |
In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway. This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process. |
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
---|
Probab=99.81 E-value=1.9e-18 Score=133.35 Aligned_cols=217 Identities=18% Similarity=0.127 Sum_probs=135.3 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHHHHHH Q ss_conf 999940036853887770899999999999999976-99099982365410233-44203------77775402467888 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAK-GIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTVDSMG 80 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~-g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~~~~~ 80 (242) T Consensus 1 iVIK~GG~~l~~-------~~~~~~~~~~i~~l~~~~~~~vVlVHGggpqI~~~l~~~gi~~~f~~G~RvTd~~tl~vv~ 73 (252) T cd04249 1 LVIKLGGALLET-------EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT 73 (252) T ss_pred CEEEECCHHCCC-------HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH T ss_conf 989978246178-------8899999999999998189876998799689999999769997237965658999999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--------------HHHHHHHHHHCCHHHHCCCCCCCCC----CC-CC Q ss_conf 88989999999999976188641134001002--------------4566543210000110011111246----55-67 Q gi|254780777|r 81 MLSTVINALALDLALRKINVPTVILSSIFMPQ--------------VCEVFSCRNAVSYLSQGKVVIFSGG----TG-NA 141 (242) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~ 141 (242) T Consensus 74 ~vl~g~vn~~lv~~l~~~g~~a~gl~~~dg~~~~~~~~~~dlG~vG~v~~Vn~~~i~~ll~~g~IPVisplg~~~~G~~~ 153 (252) T cd04249 74 GALAGTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLM 153 (252) T ss_pred HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHCCCCCCEECCCEECCCCCEE T ss_conf 99846159999999973589862044567746873023666786555323557899998628987476353148999879 Q ss_pred CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHCCC- Q ss_conf 77621578888864164466514754351234322344444444115999985-------5998140999999997499- Q gi|254780777|r 142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDCSI- 213 (242) Q Consensus 142 ~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~gI- 213 (242) T Consensus 154 NiNaD~~A~~iA~aL~A~-Li~ltdv~Gvld~------~g~li~~l~~~e~~~li~~~~i~gGMipKl~aa~~Al~~gv~ 226 (252) T cd04249 154 NVNADQAATAIAQLLNAD-LVLLSDVSGVLDA------DKQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRR 226 (252) T ss_pred ECCHHHHHHHHHHHHCCC-EEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 759999999999971598-9999688613889------998942189999999997595479739999999999981998 Q ss_pred CEEEEECCCCCHHHHHHCCCCCCCEE Q ss_conf 69995189854799997799878246 Q gi|254780777|r 214 PIIVFSIHSPGGIWGGLSGIGRSTII 239 (242) Q Consensus 214 ~v~I~ng~~~~~i~~~l~Ge~~GT~I 239 (242) T Consensus 227 ~v~I~~g~~~~~L~elft~~GiGT~I 252 (252) T cd04249 227 GIDIASWQYPEQLTALLAGEPVGTKI 252 (252) T ss_pred EEEEECCCCCHHHHHHHCCCCCCCCC T ss_conf 79994389873899997599987739 |
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
---|
Probab=99.79 E-value=4.8e-18 Score=130.91 Aligned_cols=208 Identities=18% Similarity=0.219 Sum_probs=128.4 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCC------------CCCCHHHH Q ss_conf 999940036853887770899999999999999976990999823654102334420377------------77540246 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY------------LLCERSTV 76 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~------------~~~~~~~~ 76 (242) T Consensus 1 iVIK~GG~~l~d----------~~~~---~~~l~~lG~~~VlVHGgg~qI~~~l~~~gi~~~fv~~~~Gl~~RvTd~~~l 67 (257) T cd04251 1 IVVKIGGSVVSD----------LDKV---IDDIANFGERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETL 67 (257) T ss_pred CEEEECHHHHHC----------HHHH---HHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCEEECCHHHH T ss_conf 989989588769----------8999---999997599989997997799999998599967741789862021898999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--------------------------HHHHHHHHHCCHHHHCC Q ss_conf 7888889899999999999761886411340010024--------------------------56654321000011001 Q gi|254780777|r 77 DSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV--------------------------CEVFSCRNAVSYLSQGK 130 (242) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 130 (242) T Consensus 68 ~-~v~~~~g~vn~~lv~~l~~~g~~a~glsg~d~~~~~~~~~~~~~~~~~g~~~~id~g~vG~v~~V~~~~i~~ll~~g~ 146 (257) T cd04251 68 E-VFVMVMGLINKKIVARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGY 146 (257) T ss_pred H-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCC T ss_conf 9-999999999999999998489986522266673689851252442467860104579767798987899999984899 Q ss_pred CCCCCC-----CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-----CCCCCC Q ss_conf 111124-----6556777621578888864164466514754351234322344444444115999985-----599814 Q gi|254780777|r 131 VVIFSG-----GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-----KGLKVM 200 (242) Q Consensus 131 ~~~~~~-----~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-----~G~~v~ 200 (242) T Consensus 147 iPVispig~~~~G~~~NvnaD~~A~~iA~aL~A~kLI~ltdv~Gvl~-d------g~li~~l~~~e~~~li~~i~gGM~p 219 (257) T cd04251 147 LPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYL-D------GRVIERITVSDAESLLEKAGGGMKR 219 (257) T ss_pred CEEECCCCCCCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCEEEC-C------CEECCCCCHHHHHHHHHHHCCCHHH T ss_conf 45866766688760742877999999999809996999968840424-9------8453658999999999873485399 Q ss_pred CHHHHHHHHHCCCC-EEEEECCCCCHHHHHHCCCCCCCEE Q ss_conf 09999999974996-9995189854799997799878246 Q gi|254780777|r 201 DCASVVLARDCSIP-IIVFSIHSPGGIWGGLSGIGRSTII 239 (242) Q Consensus 201 ~~~A~~~a~~~gI~-v~I~ng~~~~~i~~~l~Ge~~GT~I 239 (242) T Consensus 220 Kl~aa~~A~~~GV~~v~Ii~g~~~~~ll~el~G--~GT~I 257 (257) T cd04251 220 KLLAAAEAVEGGVREVVIGDARADSPISSALNG--GGTVI 257 (257) T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC--CCCCC T ss_conf 999999999809997999079998779999658--98469 |
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
>CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
---|
Probab=99.78 E-value=1.8e-17 Score=127.32 Aligned_cols=226 Identities=14% Similarity=0.125 Sum_probs=141.7 Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHCC------CCCCCCHHHH Q ss_conf 882499999400368538877708999999999999999769909998236541023-344203------7777540246 Q gi|254780777|r 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVAE------NYLLCERSTV 76 (242) Q Consensus 4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~~------~~~~~~~~~~ 76 (242) T Consensus 21 ~rgktfVIk~gG~~~~d~-------~l~~~~~~DialL~~lGik~VlVHGgg~qI~~~l~~~gi~~~f~~G~RvTd~~~l 93 (284) T CHL00202 21 FRGRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTM 93 (284) T ss_pred HCCCEEEEEECCEEEECH-------HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH T ss_conf 689989999896666375-------4899999999999988997999889966899999976998436288321887899 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCH--------H---HHH----HHHHHHHHHCCHHHHCCCCCCCCC--- Q ss_conf 788888-989999999999976188641134001--------0---024----566543210000110011111246--- Q gi|254780777|r 77 DSMGML-STVINALALDLALRKINVPTVILSSIF--------M---PQV----CEVFSCRNAVSYLSQGKVVIFSGG--- 137 (242) Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (242) T Consensus 94 ~vv~~vl~g~vn~-~lv~~l~~~g~~a~gl~g~dg~~i~A~~~~~~D~g~vG~V~~Vd~~~I~~lL~~g~IpVIspig~~ 172 (284) T CHL00202 94 EIVEMVLAGKVNK-DLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAAD 172 (284) T ss_pred HHHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHCCCEEEEECCEEC T ss_conf 9999998778999-999999856995055312557669983589877444444123267999999708975998044067 Q ss_pred -C-CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---C----CCCCCCHHHHHHH Q ss_conf -5-56777621578888864164466514754351234322344444444115999985---5----9981409999999 Q gi|254780777|r 138 -T-GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---K----GLKVMDCASVVLA 208 (242) Q Consensus 138 -~-~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~----G~~v~~~~A~~~a 208 (242) T Consensus 173 ~~G~~~NvnaD~~A~~iA~aL~A~KLI~ltdv~Gvl~d~~---~~~~li~~l~~~e~~~l~~~~~i~~gm~pkl~aa~~A 249 (284) T CHL00202 173 HDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADIN---DPNSLISTLNIKEARNLASTGIISGGMIPKVNCCIRA 249 (284) T ss_pred CCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCEECCCC---CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 9999895099999999999864196999988967106788---7653244489999999987598787469999999999 Q ss_pred HHCCC-CEEEEECCCCCH-HHHHHCCCCCCCEEC Q ss_conf 97499-699951898547-999977998782466 Q gi|254780777|r 209 RDCSI-PIIVFSIHSPGG-IWGGLSGIGRSTIIS 240 (242) Q Consensus 209 ~~~gI-~v~I~ng~~~~~-i~~~l~Ge~~GT~I~ 240 (242) T Consensus 250 l~~GV~rvhiidg~~~~aLL~ELfT~~G~GT~Iv 283 (284) T CHL00202 250 LAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284) T ss_pred HHCCCCEEEEECCCCCCEEHHHHHCCCCCEEEEE T ss_conf 9859998999258899700056527999814884 |
|
>PRK12353 carbamate kinase; Reviewed | Back alignment and domain information |
---|
Probab=99.78 E-value=6.7e-18 Score=129.99 Aligned_cols=229 Identities=21% Similarity=0.258 Sum_probs=136.3 Q ss_pred CEEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHH-HHCCC---CC--CCCHHHHH Q ss_conf 2499999400368538877-7089999999999999997699099982365410-2334-42037---77--75402467 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQ-VVAEN---YL--LCERSTVD 77 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~-~~~~~---~~--~~~~~~~~ 77 (242) T Consensus 2 ~k~IVIalGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~G~~~VitHGnGPQVG~lll~~~~~~~~~~~~~pld~~~a~ 81 (312) T PRK12353 2 MKKIVVALGGNALGSSDGSAEEQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNLLLQQAAADSEKNPAMPLDVCVAM 81 (312) T ss_pred CCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEECCHHHH T ss_conf 84499983725318999998999999999999999999889969998388448899999866542688898211014343 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH-------------- Q ss_conf 88888989999999999976188641134--------------------------00100245665-------------- Q gi|254780777|r 78 SMGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF-------------- 117 (242) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~-------------- 117 (242) T Consensus 82 tqG~IGy~l~q-~l~~~l~~~g~~~~v~tlvtqv~Vd~~Dpaf~~ptKpIG~~y~~~ea~~l~~~~g~~~~~d~g~G~RR 160 (312) T PRK12353 82 SQGYIGYWLQN-ALDNELLKRGINKPVATVVTQVEVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGWTFKEDAGRGYRR 160 (312) T ss_pred CCCHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEE T ss_conf 03069999999-99999984589986489998998878760002788765665689999999972797442438886277 Q ss_pred -----------HHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC Q ss_conf -----------432100001100111112465567-------------77621578888864164466514754351234 Q gi|254780777|r 118 -----------SCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242) Q Consensus 118 -----------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242) T Consensus 161 VV~SP~P~~iie~~~I~~L~~~g~IvIa~GGGGIPV~~~~g~~~Gv~aVIdkDlaaa~LA~~l~Ad~lliLTdV~~V~~n 240 (312) T PRK12353 161 VVPSPKPVDIIEKEAIKTLVEAGVVVIAAGGGGIPVVREGGGLKGVEAVIDKDFASALLAELIDADLLIILTAVDKVYIN 240 (312) T ss_pred EECCCCCCCEECHHHHHHHHHCCCEEEECCCCCCCEECCCCCEECCEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHC T ss_conf 50699973022399999999789789964888776576799446613331533888999997199879997163467652 Q ss_pred CCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-C-EEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 322344444444115999985--------5998140999999997499-6-999518985479999779987824668 Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-P-IIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 174 dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~-v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 241 ~g~--p~q~~l~~lt~~e~~~~~~~G~F~~GsM~PKVeAai~fv~~gg~~~aiI---t~l~~~~~al~G-~~GT~I~~ 312 (312) T PRK12353 241 FGK--PNQKKLDRVTVSELEKYIEEGQFAPGSMLPKVEAAISFVESGGKRKAII---TSLENAKEALEG-KAGTVIVK 312 (312) T ss_pred CCC--CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE---CCHHHHHHHHCC-CCCCEEEC T ss_conf 899--8613321388999999997799888882699999999999489837998---989999999679-99848829 |
|
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=99.78 E-value=3.4e-17 Score=125.68 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=141.7 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC------CCCCCCCHHHHHH Q ss_conf 24999994003685388777089999999999999997699099982365410-2334420------3777754024678 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA------ENYLLCERSTVDS 78 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~------~~~~~~~~~~~~~ 78 (242) T Consensus 2 ~k~~VIK~GG~~~~~~-------~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tle- 73 (265) T COG0548 2 GKTIVIKLGGSAMEDE-------NLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLE- 73 (265) T ss_pred CCEEEEEECCEEECCH-------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCEECCCHHHHH- T ss_conf 9669999894644170-------27899999999999779947999289568889999769997634977767989999- Q ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCH--------HHHHH----------HHHHHHHHCCHHHHCCCCCCC---- Q ss_conf 8888989-999999999976188641134001--------00245----------665432100001100111112---- Q gi|254780777|r 79 MGMLSTV-INALALDLALRKINVPTVILSSIF--------MPQVC----------EVFSCRNAVSYLSQGKVVIFS---- 135 (242) Q Consensus 79 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~---- 135 (242) T Consensus 74 vv~mvl~G~vNk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~ 153 (265) T COG0548 74 VVEMVLGGTVNKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAV 153 (265) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCEEEECCEE T ss_conf 99999988889999999997187414555337878999986641343364044589878999999975798169807427 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHH Q ss_conf -46556777621578888864164466514754351234322344444444115999985-------5998140999999 Q gi|254780777|r 136 -GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVL 207 (242) Q Consensus 136 -~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~ 207 (242) T Consensus 154 ~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~ 229 (265) T COG0548 154 DEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIPKVEAALE 229 (265) T ss_pred CCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCC----EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 8999787048899999999973988299872770003489985----455357999999886249734860899999999 Q ss_pred HHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEECC Q ss_conf 997499-699951898547999-9779987824668 Q gi|254780777|r 208 ARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTIISG 241 (242) Q Consensus 208 a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I~~ 241 (242) T Consensus 230 A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265) T COG0548 230 ALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265) T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEECC T ss_conf 998499738996377862699998457985068259 |
|
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
---|
Probab=99.75 E-value=5.5e-17 Score=124.33 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=134.2 Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHH Q ss_conf 8824999994003685388777089999999999999997699099982365410233-44203------7777540246 Q gi|254780777|r 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTV 76 (242) Q Consensus 4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~ 76 (242) T Consensus 16 f~~kt~VIK~GG~~~~~~--------~l~~~~~di~lL~~~Gi~~VlVHGGG~~I~~~l~~~gi~~~fv~G~RVTd~~tl 87 (280) T cd04237 16 HRGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAAL 87 (280) T ss_pred HCCCEEEEEECCHHHCCH--------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCHHHH T ss_conf 689989999896330774--------499999999999988996999928986779999986997462178777999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCCC---CCC-----CCCHH------HH----HHHHHHHHHHCCHHHHCCCCCC Q ss_conf 788888989999999999976----18864---113-----40010------02----4566543210000110011111 Q gi|254780777|r 77 DSMGMLSTVINALALDLALRK----INVPT---VIL-----SSIFM------PQ----VCEVFSCRNAVSYLSQGKVVIF 134 (242) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~-----~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~ 134 (242) T Consensus 88 ~vv~~~~G~vn~~i-~a~ls~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~vG~v~~Vn~~~l~~ll~~~~iPVI 166 (280) T cd04237 88 ECVKEAAGAVRLEI-EALLSMGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280) T ss_pred HHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEE T ss_conf 99999999999999-99997053435653557234058658988865314744467983026649999868758965896 Q ss_pred CCC-----CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---C-----CCCCCC Q ss_conf 246-----556777621578888864164466514754351234322344444444115999985---5-----998140 Q gi|254780777|r 135 SGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---K-----GLKVMD 201 (242) Q Consensus 135 ~~~-----~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~-----G~~v~~ 201 (242) T Consensus 167 spig~~~~G~~~NvNAD~~A~~iA~aL~A~kLi~ltdv~Gvl~~------~~~~i~~l~~~e~~~ll~~~~~i~~GMipK 240 (280) T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280) T ss_pred ECCEECCCCCEEEECHHHHHHHHHHHHHHCEEEEECCCCCEECC------CCCCCCCCCHHHHHHHHHHCCCCCCCHHHH T ss_conf 04318899988700899999999999744709987188832789------998865049999999998479888778999 Q ss_pred HHHHHHHHHCCCC-EEEEECCCCCHHH-HHHCCCCCCCEE Q ss_conf 9999999974996-9995189854799-997799878246 Q gi|254780777|r 202 CASVVLARDCSIP-IIVFSIHSPGGIW-GGLSGIGRSTII 239 (242) Q Consensus 202 ~~A~~~a~~~gI~-v~I~ng~~~~~i~-~~l~Ge~~GT~I 239 (242) T Consensus 241 l~~a~~Al~~GV~~vhIidg~~~~aLL~ElfT~~G~GT~I 280 (280) T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280) T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC T ss_conf 9999999983999899905999971467760699986709 |
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
---|
Probab=99.72 E-value=9.1e-17 Score=123.01 Aligned_cols=206 Identities=21% Similarity=0.183 Sum_probs=130.9 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99940036853887770899999999999999976990999823654102334420377775402467888889899999 Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL 89 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242) T Consensus 3 vVk~~Gs~~~~------------~~~~~~~ale~~~~~i~iVpGGg~FAd~VR~id~~~~lSd-sasHwmAI~~Md~~G~ 69 (212) T COG2054 3 VVKKGGSGVAE------------RAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEFGLSD-SASHWMAITAMDQYGF 69 (212) T ss_pred EEEECCCCHHH------------HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH T ss_conf 68862787088------------8899999998414608995184289999999987459875-0788999999999889 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCHHHHHHCCCCC Q ss_conf 99999976188641134001002456654321000011001111124655-67776215788888641644665147543 Q gi|254780777|r 90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTG-NAFLTTDSAAALRASEIGADVILKGTQVD 168 (242) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~a~~ia~~~~ad~l~i~tdvd 168 (242) T Consensus 70 ~la----d~~~~~~~~tv~ep~~~----i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVd 141 (212) T COG2054 70 YLA----DLASRFVTDTVTEPEDG----IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVD 141 (212) T ss_pred HHH----HHHCCCCCCEEECHHHC----CCCCCCEEEEEHHHHHCCCCCCCCEEECCCHHHHHHHHHCCCCEEEEEECCC T ss_conf 998----64300342023164442----6756606860067650278887652222318999999972982799995378 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC-CCCCCEECC Q ss_conf 5123432234444444411599998559981409999999974996999518985479999779-987824668 Q gi|254780777|r 169 GVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSG-IGRSTIISG 241 (242) Q Consensus 169 Giyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~G-e~~GT~I~~ 241 (242) T Consensus 142 GI~~~~~~----~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212) T COG2054 142 GIYEEDPK----GKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212) T ss_pred CCCCCCCC----CHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 60115896----30566621755356-75315604068999718715998787889999987165654478757 |
|
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
---|
Probab=99.72 E-value=3.4e-16 Score=119.50 Aligned_cols=228 Identities=20% Similarity=0.219 Sum_probs=138.1 Q ss_pred EEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHHH--HCC----CCCCCCHHHH Q ss_conf 499999400368538877-70--899999999999999976990999823654102-3344--203----7777540246 Q gi|254780777|r 7 KRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQV--VAE----NYLLCERSTV 76 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~~--~~~----~~~~~~~~~~ 76 (242) T Consensus 3 k~iVvALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vVitHGNGPQVG~i~l~~~~~~~~~~p~~PLd~~~A 82 (313) T PRK12454 3 KRIVIALGGNALQQRGEKGTAENMMKNVRRTAEQIARLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313) T ss_pred CEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 55999808365089999999999999999999999999987997999818813999999999873246899866035523 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC-----------------------HHHHHHHHH-----------HH Q ss_conf 7888889899999999999761886411---3400-----------------------100245665-----------43 Q gi|254780777|r 77 DSMGMLSTVINALALDLALRKINVPTVI---LSSI-----------------------FMPQVCEVF-----------SC 119 (242) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~-----------~~ 119 (242) T Consensus 83 ~sQG~IGy~lqq-al~n~L~~~~~~~~v~tlvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~eD~grG~R 161 (313) T PRK12454 83 MTQGWIGYMIQQ-ALRNVLPKRGIERQVATIVTQTIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGYR 161 (313) T ss_pred CCCHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEE T ss_conf 013489999999-9999998539998469999899987876322089886268879999999998559789764898558 Q ss_pred --------------HHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCC Q ss_conf --------------2100001100111112465567-------------7762157888886416446651475435123 Q gi|254780777|r 120 --------------RNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYS 172 (242) Q Consensus 120 --------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt 172 (242) T Consensus 162 RVVpSP~P~~IvE~~~I~~Lv~~g~iVIa~GGGGIPVv~~~g~l~GveAVIDKD~aaa~LA~~l~Ad~liILTdVd~V~~ 241 (313) T PRK12454 162 RVVPSPDPLGIVEIETIKMLVENGVIVIAAGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL 241 (313) T ss_pred EECCCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCCEEECCCHHHHHHHHHHCCCEEEEEECCCHHEE T ss_conf 86179999427528999999978988999489856668559827565204445188999999709998999616650000 Q ss_pred CCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 4322344444444115999985--------5998140999-9999974996999518985479999779987824668 Q gi|254780777|r 173 ADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 173 ~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 242 n~--g~p~q~~l~~it~~e~~~~~~eg~F~~GsM~PKV~Aai~Fve~gg~~aiIts---l~~~~~al~g~-~GT~IvP 313 (313) T PRK12454 242 NY--GKPDQKALDKVTVDEAKKYYEEGHFPAGSMGPKILAAIRFVENGGRRAVIGD---LEKAVEALEGK-TGTRIIP 313 (313) T ss_pred CC--CCCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---HHHHHHHHCCC-CCCEECC T ss_conf 38--9964122403889999999875998888826999999999994797699998---89999996799-9988659 |
|
>PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
---|
Probab=99.72 E-value=3.2e-16 Score=119.60 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=134.7 Q ss_pred CEEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHH-HHC---CCC--CCCCHHHHH Q ss_conf 2499999400368538877-70899999999999999976990999823654102-334-420---377--775402467 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQ-VVA---ENY--LLCERSTVD 77 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~-~~~---~~~--~~~~~~~~~ 77 (242) T Consensus 3 ~k~iVIAlGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~g~~vVitHGNGPQVG~l~l~~~~~~~~~~p~~Pld~~~A~ 82 (313) T PRK12686 3 KEKIVIALGGNAILQTEASAEAQQTAVREAMQHLVDLIEAGADIVITHGNGPQVGSLLLQQAESNSNKVPAMPLDTCVAM 82 (313) T ss_pred CCEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHC T ss_conf 77799982803128999999999999999999999999869979998188079899999987643688898764045430 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC---CCC------C-----------------HHHHHHHHH-------------- Q ss_conf 888889899999999999761886411---340------0-----------------100245665-------------- Q gi|254780777|r 78 SMGMLSTVINALALDLALRKINVPTVI---LSS------I-----------------FMPQVCEVF-------------- 117 (242) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~-----------------~~~~~~~~~-------------- 117 (242) T Consensus 83 sQG~IGy~lqq-al~n~l~~~~~~~~v~tllTqv~VD~~DpAF~~PtKpIGp~y~~eeA~~l~~~~gw~~~~d~g~g~RR 161 (313) T PRK12686 83 SQGMIGYWLQT-ALNNELTERNIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR 161 (313) T ss_pred CCHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEE T ss_conf 23379999999-99999986389986489998888888886775789860688799999999972498699748984489 Q ss_pred -----------HHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC Q ss_conf -----------432100001100111112465567-------------77621578888864164466514754351234 Q gi|254780777|r 118 -----------SCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242) Q Consensus 118 -----------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242) T Consensus 162 VVpSP~P~~Ive~~~I~~Lv~~g~ivIa~GGGGIPV~~~~~~~~GveAVIDKDlaaa~LA~~l~AD~liILTdV~~V~~n 241 (313) T PRK12686 162 VVPSPKPKEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDGNTLKGVEAVIDKDFASEKLAELIDADLLMILTGVENVFIN 241 (313) T ss_pred EECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEECCCEECEEEEECCCHHHHHHHHHCCCCEEEEEECCCEEEEC T ss_conf 83699984114699999999689889982798743797589676302242544788999986199989997266602321 Q ss_pred CCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHH-HHHHHC-CCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 322344444444115999985--------59981409999-999974-99699951898547999977998782466 Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASV-VLARDC-SIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 174 dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~-~~a~~~-gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 242 ~g~--p~q~~l~~it~~e~~~~~~~g~F~~GSM~PKVeAai~Fve~g~g~~aiI---~~l~~~~~al~G~-~GT~It 312 (313) T PRK12686 242 FNK--PNQQKLDDISVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGKNKKAII---TSLEQAKEALAGN-AGTHIT 312 (313) T ss_pred CCC--CCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE---CCHHHHHHHHCCC-CCCEEE T ss_conf 899--7522352189999999997599988882799999999998099986998---9899999996799-987871 |
|
>PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
---|
Probab=99.69 E-value=1.3e-15 Score=115.83 Aligned_cols=221 Identities=17% Similarity=0.145 Sum_probs=135.0 Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHHHHC------CCCCCCCHHHHHH Q ss_conf 249999940036853887770899999999999999976990999823654102-334420------3777754024678 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQVVA------ENYLLCERSTVDS 78 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~~~~------~~~~~~~~~~~~~ 78 (242) T Consensus 25 gktfVI~~gG~a~~~~~--------~~~~~~DIaLL~slGIr~VlVHGggpqI~~~L~~~gi~s~f~~G~RVTD~~tl~~ 96 (441) T PRK05279 25 GKTFVIMLGGEAIAHGN--------FSNIVNDIALLHSLGIRLVLVHGARPQIEEQLAAHGIEPRYHKGLRITDAAALEC 96 (441) T ss_pred CCEEEEEECCEECCCCC--------HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHH T ss_conf 99899998972036835--------8999999999986897699987997788999997699855139913699999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--------CCC-----CCCHHHHH----------HHHHHHHHHCCHHHHCCCCCCC Q ss_conf 888898999999999997618864--------113-----40010024----------5665432100001100111112 Q gi|254780777|r 79 MGMLSTVINALALDLALRKINVPT--------VIL-----SSIFMPQV----------CEVFSCRNAVSYLSQGKVVIFS 135 (242) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 135 (242) T Consensus 97 v~~v~G~v~~~I-~a~Ls~-gl~nspm~g~~i~v~sGn~i~A~p~Gv~dGvD~g~vG~V~~Vd~~~I~~~L~~g~Ipvis 174 (441) T PRK05279 97 VKQAAGELRLDI-EARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYCHTGEVRRIDTEAIRRQLDNGAIVLLS 174 (441) T ss_pred HHHHHHHHHHHH-HHHHHC-CCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHCCCEEEEC T ss_conf 999999999999-999834-367875557724675486689876353137566754158797389999999789829986 Q ss_pred CC-----CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----------CCCCCC Q ss_conf 46-----556777621578888864164466514754351234322344444444115999985----------599814 Q gi|254780777|r 136 GG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----------KGLKVM 200 (242) Q Consensus 136 ~~-----~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----------~G~~v~ 200 (242) T Consensus 175 plG~s~~Ge~fNinad~vA~~iA~aL~A~KLI~ltd~~Gi~d------~~g~li~~lt~~ea~~ll~~~~~~~i~~g~~~ 248 (441) T PRK05279 175 PLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGILD------EDGELIRELSPNEAQALLERLEQGDLNSGTAR 248 (441) T ss_pred CEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC------CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH T ss_conf 646389999866699999999999769988998528876428------99987530799999999975317888845699 Q ss_pred CHHHHHHHHHCCC-CEEEEECCCCCHH-HHHHCCCCCCCEECCC Q ss_conf 0999999997499-6999518985479-9997799878246689 Q gi|254780777|r 201 DCASVVLARDCSI-PIIVFSIHSPGGI-WGGLSGIGRSTIISGE 242 (242) Q Consensus 201 ~~~A~~~a~~~gI-~v~I~ng~~~~~i-~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 249 kl~~a~~A~~~GV~RvHiIdg~~~gaLL~ELFT~~GvGTmI~~~ 292 (441) T PRK05279 249 FLRAAVKACRGGVPRSHLISYAEDGALLQELFTRDGIGTQIVME 292 (441) T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECC T ss_conf 99999999983988699756878841887762588718988547 |
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>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
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Probab=99.66 E-value=3.7e-15 Score=113.11 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=133.9 Q ss_pred EEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC---CCCCCCCHHHH--HH Q ss_conf 99999400368538877-70--89999999999999997699099982365410-2334420---37777540246--78 Q gi|254780777|r 8 RVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA---ENYLLCERSTV--DS 78 (242) Q Consensus 8 rIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~---~~~~~~~~~~~--~~ 78 (242) T Consensus 1 riViALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~l~~~G~~vVitHGNGPQVG~ll~~~~~~~~~~p~~Pld~~~A~s 80 (308) T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308) T ss_pred CEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 98999573650899999999999999999999999999869979998699518999999888624678998620464653 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH-----------H--- Q ss_conf 8888989999999999976188641134--------------------------00100245665-----------4--- Q gi|254780777|r 79 MGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF-----------S--- 118 (242) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~-----------~--- 118 (242) T Consensus 81 QG~IGy~lq-qal~n~l~~~~~~~~v~t~vTqv~Vd~~DpAF~~PtKpIGpfy~~eeA~~l~~~~g~~~~eD~grg~RRV 159 (308) T cd04235 81 QGMIGYMLQ-QALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308) T ss_pred HHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEE T ss_conf 059999999-9999999854899845999989998899832238888657775999999999845978974288640578 Q ss_pred -----------HHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC Q ss_conf -----------32100001100111112465567-------------776215788888641644665147543512343 Q gi|254780777|r 119 -----------CRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 (242) Q Consensus 119 -----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d 174 (242) T Consensus 160 VpSP~P~~IvE~~~I~~L~~~g~ivIa~GGGGIPVv~~~~~~~GveAVIDKD~aaa~LA~~l~Ad~liiLTdV~~V~~n~ 239 (308) T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308) T ss_pred ECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHCC T ss_conf 66999814546999999997798899828986546824995443110213438889999863898899971641687628 Q ss_pred CCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 22344444444115999985--------5998140999999997499-699951898547999977998782466 Q gi|254780777|r 175 PRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-PIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 175 P~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 240 g--~p~q~~L~~it~~e~~~~~~~g~F~~GSM~PKv~Aai~fv~~gg~~a~I---tsl~~~~~al~G-~~GT~I~ 308 (308) T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAII---TSLENAEAALEG-KAGTVIV 308 (308) T ss_pred C--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE---CCHHHHHHHHCC-CCCCEEC T ss_conf 9--9860022148899999999769988898369999999999948987999---989999999679-9995879 |
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
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Probab=99.63 E-value=2.6e-14 Score=107.88 Aligned_cols=214 Identities=14% Similarity=0.125 Sum_probs=128.4 Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHC------CCCCCCCHHHHHHHHHH Q ss_conf 999400368538877708999999999999999769909998236541023-34420------37777540246788888 Q gi|254780777|r 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVA------ENYLLCERSTVDSMGML 82 (242) Q Consensus 10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~ 82 (242) T Consensus 2 VIk~GG~~~~d---------~~~~l~~di~lL~~lGi~~VlVHGgg~qI~~~l~~~gi~~~~~~G~RvTd~~~l~~v~~v 72 (248) T cd04252 2 VIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKV 72 (248) T ss_pred EEEECCHHHHH---------HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 79999177652---------199999999999988995999918987888999986998531388446898999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCH-----HH---HH----HHHHHHHHHCCHHHHCCCCCCCC-----CCCCCCCCC Q ss_conf 989999999999976188641134001-----00---24----56654321000011001111124-----655677762 Q gi|254780777|r 83 STVINALALDLALRKINVPTVILSSIF-----MP---QV----CEVFSCRNAVSYLSQGKVVIFSG-----GTGNAFLTT 145 (242) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 145 (242) T Consensus 73 l~~vn~~-lv~~l~~~g~~a~~i~g~~~~a~~~~~~~~g~vG~v~~Vd~~~i~~lL~~g~Ipvispig~~~~G~~~Nvna 151 (248) T cd04252 73 FLEENLK-LVEALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNA 151 (248) T ss_pred HHHHHHH-HHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCCCCEEEECH T ss_conf 9999999-999999659973860376368886676567843225898299999998589944885147889999898799 Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHH----CCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 1578888864164466514754351234322344444444115999----985----59981409999999974996999 Q gi|254780777|r 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQ----FIE----KGLKVMDCASVVLARDCSIPIIV 217 (242) Q Consensus 146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e----~l~----~G~~v~~~~A~~~a~~~gI~v~I 217 (242) T Consensus 152 D~~A~~iA~aL~A~kLi~ltdv~Gv~d~~g------~~i~~l~~~~~~~~l~~~~~i~~gm~~kl~a~~~~~~~v~r~h~ 225 (248) T cd04252 152 DVAAGELARVLEPLKIVFLNETGGLLDGTG------KKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSS 225 (248) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCC------CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 999999999759998999958830179999------99742788999999987799778636479999999963997189 Q ss_pred EECCCCCHHH-HHHCCCCCCCEE Q ss_conf 5189854799-997799878246 Q gi|254780777|r 218 FSIHSPGGIW-GGLSGIGRSTII 239 (242) Q Consensus 218 ~ng~~~~~i~-~~l~Ge~~GT~I 239 (242) T Consensus 226 i~~~~~~aLL~ELFT~~G~GT~I 248 (248) T cd04252 226 VSITSPDDLQKELFTHSGAGTLI 248 (248) T ss_pred EECCCCCHHHHHHHCCCCCCCCC T ss_conf 96027866577771599870639 |
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
>PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
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Probab=99.61 E-value=2.5e-14 Score=107.95 Aligned_cols=223 Identities=22% Similarity=0.188 Sum_probs=131.3 Q ss_pred CEEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-H--HHCCCCCCCCHHH--HH Q ss_conf 2499999400368538877-70--89999999999999997699099982365410233-4--4203777754024--67 Q gi|254780777|r 6 YKRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-Q--VVAENYLLCERST--VD 77 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~--~~~~~~~~~~~~~--~~ 77 (242) T Consensus 1 Mk~iViALGGNAl~~~g~~~t~e~Q~~~v~~aa~~ia~l~~-~~~vVITHGNGPQVG~l~lq~~a~~~~p~~PLd~~~A~ 79 (297) T PRK09411 1 MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLAR-SYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAE 79 (297) T ss_pred CCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 97599976814217999998999999999999999999980-89399984781298999999886326999883034242 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC---CCCC------CH-----------HHHH-----HHHHHHH------------ Q ss_conf 88888989999999999976188641---1340------01-----------0024-----5665432------------ Q gi|254780777|r 78 SMGMLSTVINALALDLALRKINVPTV---ILSS------IF-----------MPQV-----CEVFSCR------------ 120 (242) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~-----------~~~~-----~~~~~~~------------ 120 (242) T Consensus 80 sQG~IGY-----~l~q~L~~~~~~~~V~tvlTQv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrg~RRV 154 (297) T PRK09411 80 SQGMIGY-----MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRV 154 (297) T ss_pred HHHHHHH-----HHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEE T ss_conf 2069999-----99999984378998579988899889981213899851788799999999975596895269802687 Q ss_pred -------------HHCCHHHHCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC Q ss_conf -------------100001100111112465567----------776215788888641644665147543512343223 Q gi|254780777|r 121 -------------NAVSYLSQGKVVIFSGGTGNA----------FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177 (242) Q Consensus 121 -------------~~~~~~~~~~~~~~~~~~~~~----------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~ 177 (242) T Consensus 155 VpSP~P~~IvE~~~Ik~Lv~~g~iVIa~GGGGIPV~~~~~GVeAVIDKD~asalLA~~l~AD~liILTdVd~V~~n~g-- 232 (297) T PRK09411 155 VASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG-- 232 (297) T ss_pred ECCCCCCCEECHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHCCC-- T ss_conf 379998416369999999986987996598870558985352136634177899999729998999746650101389-- Q ss_pred CCCCCCCCCCCHHHHHH----CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 44444444115999985----5998140999-999997499699951898547999977998782466 Q gi|254780777|r 178 HASSTRFDSLTYNQFIE----KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 178 ~~~ak~i~~is~~e~l~----~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 233 ~p~q~~L~~~t~~el~~~~~~~GSM~PKVeAai~Fv~~~G~~aiIt---sl~~~~~al~G~-~GT~It 296 (297) T PRK09411 233 TPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIG---ALSRIEETLAGE-AGTCIS 296 (297) T ss_pred CCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEC---CHHHHHHHHCCC-CCCEEE T ss_conf 9243356218999998326798986489999999999579869989---799999996799-987872 |
|
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms | Back alignment and domain information |
---|
Probab=99.61 E-value=1.1e-14 Score=110.05 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=123.6 Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHH-H----HHC--CCC-----CCCCHHH Q ss_conf 999940036853887770899999999999999976990-99982365410233-4----420--377-----7754024 Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIE-IGIVVGGGNIFRGS-Q----VVA--ENY-----LLCERST 75 (242) Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~-vviV~sg~~~~~~~-~----~~~--~~~-----~~~~~~~ 75 (242) T Consensus 2 ~ViK~GG~~~~~~-------~~~~~~~~~~~~l~~~g~~PpviVHGGGp~in~~~~~lgi~~~f~~Gl~G~~~RvTd~~t 74 (254) T TIGR00761 2 IVIKIGGSAISND-------ELLEEFFSDIAFLRAVGIKPPVIVHGGGPEINELLEALGIEPEFKNGLSGVVFRVTDKET 74 (254) T ss_pred EEEEECCEEECCC-------HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCCCEEEECCCHHH T ss_conf 7898447341041-------246999999999997298553898378526888998328983676688720375278899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH------------HHH--------------HHHHHHHHHCCHHHHC Q ss_conf 67888889899999999999761886411340010------------024--------------5665432100001100 Q gi|254780777|r 76 VDSMGMLSTVINALALDLALRKINVPTVILSSIFM------------PQV--------------CEVFSCRNAVSYLSQG 129 (242) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------------~~~~~~~~~~~~~~~~ 129 (242) T Consensus 75 l~v~~~vL~g~vN~~LV~~l~~~g~~A~GL~g~Dg~L~~a~rk~~~~~~~~~~vv~~~~G~VG~~~~Vn~~~~~~Ll~~G 154 (254) T TIGR00761 75 LEVVEMVLIGDVNKELVALLNKHGINAIGLTGLDGQLFTADRKTASLDKEVIKVVAIDLGYVGEIKKVNKALLEALLKAG 154 (254) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCEEEECCCCHHHHHHHHHCC T ss_conf 99989998364669999999967992863113577357999878988515768999974841231327889999999649 Q ss_pred CCCCCCCCC------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHH-------C Q ss_conf 111112465------567776215788888641644665147543512343223444444441159-99985-------5 Q gi|254780777|r 130 KVVIFSGGT------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY-NQFIE-------K 195 (242) Q Consensus 130 ~~~~~~~~~------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~-~e~l~-------~ 195 (242) T Consensus 155 ~~PVi~sla~~~~~g~~lNvNAD~aA~~lA~~L~A~kL~~LtDv~Gi~~~y~---d~~~~i~~l~~D~~~~~l~~~~~i~ 231 (254) T TIGR00761 155 IIPVIASLALTNAEGQALNVNADTAAGELAAALGAEKLVLLTDVPGILNGYP---DKQSLISELPLDEEIEQLIKQGVIK 231 (254) T ss_pred CCCEECCCCCCHHCCCEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC---CCCCEECCCCHHHHHHHHHHHHHHC T ss_conf 8517716658623187770677799999998609953888417403225888---7461402268679999877522231 Q ss_pred CCCCCCHHHHHHHHHCCCCEEE Q ss_conf 9981409999999974996999 Q gi|254780777|r 196 GLKVMDCASVVLARDCSIPIIV 217 (242) Q Consensus 196 G~~v~~~~A~~~a~~~gI~v~I 217 (242) T Consensus 232 gGMipKV~~a~~A~~~Gv~~v~ 253 (254) T TIGR00761 232 GGMIPKVNAALEALESGVKSVI 253 (254) T ss_pred CCCHHHHHHHHHHHHCCCCEEC T ss_conf 5985789999999973888003 |
In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm. |
>PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
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Probab=99.60 E-value=3.8e-14 Score=106.81 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=136.6 Q ss_pred EEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH-----CCCCC--CCCHHH Q ss_conf 499999400368538877-70--8999999999999999769909998236541-0233442-----03777--754024 Q gi|254780777|r 7 KRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNI-FRGSQVV-----AENYL--LCERST 75 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-~~~~~~~-----~~~~~--~~~~~~ 75 (242) T Consensus 3 k~iViALGGNAll~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vvitHGNGPQVG~l~lq~e~a~~~~~~p~~PLd~~~ 82 (316) T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316) T ss_pred CEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 66999767343289999999999999999999999999976996999817816988999999875336789987545541 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCC------C-----------------HHHHHHHHHHHH---------- Q ss_conf 6788888989999999999976188641--1340------0-----------------100245665432---------- Q gi|254780777|r 76 VDSMGMLSTVINALALDLALRKINVPTV--ILSS------I-----------------FMPQVCEVFSCR---------- 120 (242) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~-----------------~~~~~~~~~~~~---------- 120 (242) T Consensus 83 A~sQG~IGY~lqqa-l~n~l~~r~~~~vvtvlTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~~gw~~~eD~grG~ 161 (316) T PRK12352 83 ADTQGGIGYLIQQA-LNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316) T ss_pred HCCCHHHHHHHHHH-HHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCE T ss_conf 21220899999999-99999763898868998789989898010079987478869999999998668987997489963 Q ss_pred ----------------HHCCHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCC Q ss_conf ----------------100001100111112465567--------------77621578888864164466514754351 Q gi|254780777|r 121 ----------------NAVSYLSQGKVVIFSGGTGNA--------------FLTTDSAAALRASEIGADVILKGTQVDGV 170 (242) Q Consensus 121 ----------------~~~~~~~~~~~~~~~~~~~~~--------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGi 170 (242) T Consensus 162 RRVVpSP~P~~IvE~~~Ik~L~~~g~iVIa~GGGGIPV~~~~~g~l~GVeAVIDKD~asa~LA~~l~AD~liILTdVd~V 241 (316) T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316) T ss_pred EEEECCCCCCCEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCEECCEEEECCCHHHHHHHHHHCCCEEEEEECCCEE T ss_conf 78747999850405999999997898899847987533762898565431466352788999997099989997356603 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 234322344444444115999985--------5998140999-9999974996999518985479999779987824668 Q gi|254780777|r 171 YSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 171 yt~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 242 ~~n~gk--p~q~~L~~vt~~e~~~y~~eg~F~~GSM~PKV~Aai~Fve~gg~~aiIts---l~~~~~al~G~-aGT~Ivk 315 (316) T PRK12352 242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316) T ss_pred EEECCC--CCHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---HHHHHHHHCCC-CCCEEEE T ss_conf 540899--65113530899999999876999888837999999999994798699897---89999996799-9867940 |
|
>PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
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Probab=99.57 E-value=1.3e-13 Score=103.52 Aligned_cols=228 Identities=22% Similarity=0.205 Sum_probs=133.0 Q ss_pred EEEEEEEEEEEECCC-CCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH---HHCCCCCCCCHHH--HHHH Q ss_conf 999994003685388-7770--899999999999999976990999823654102334---4203777754024--6788 Q gi|254780777|r 8 RVLLKVSGEALAGIS-GFGV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ---VVAENYLLCERST--VDSM 79 (242) Q Consensus 8 rIViKiGGSsL~~~~-~~~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~---~~~~~~~~~~~~~--~~~~ 79 (242) T Consensus 2 riViALGGNAll~~g~~~t~~~Q~~~v~~aa~~ia~l~~-g~~vvitHGNGPQVG~i~l~~~~~~~~p~~PLd~~~A~SQ 80 (302) T PRK12354 2 RIVIALGGNALLRRGEPMTAENQRANIRIAAEQIAKIAP-GNEVVIVHGNGPQVGLLALQNAAYKAVPPYPLDVLGAETE 80 (302) T ss_pred EEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCC T ss_conf 499982735317999999999999999999999999975-9959998278168899999877416899988267645211 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC-----------------HHHHHHHHH---------HHH-------- Q ss_conf 8889899999999999761886411-----3400-----------------100245665---------432-------- Q gi|254780777|r 80 GMLSTVINALALDLALRKINVPTVI-----LSSI-----------------FMPQVCEVF---------SCR-------- 120 (242) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------------~~~~~~~~~---------~~~-------- 120 (242) T Consensus 81 G~IGY~lqqaL~n~l~~~k~v~tvvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrG~RRVVpSP~P 160 (302) T PRK12354 81 GMIGYMLEQELGNLLPFERPVATLLTQVEVDANDPAFANPTKPIGPVYSEEEAERLAAEKGWVIKPDGDKFRRVVPSPKP 160 (302) T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCCC T ss_conf 69999999999987556998699986899889984534899860788699999999997498871158803686379998 Q ss_pred -------HHCCHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC Q ss_conf -------100001100111112465567--------------77621578888864164466514754351234322344 Q gi|254780777|r 121 -------NAVSYLSQGKVVIFSGGTGNA--------------FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHA 179 (242) Q Consensus 121 -------~~~~~~~~~~~~~~~~~~~~~--------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~ 179 (242) T Consensus 161 ~~IvE~~~Ik~L~~~g~iVIa~GGGGIPVv~~~~g~l~GveAVIDKD~aaa~LA~~l~AD~liILT~Vd~V~~n~gk--p 238 (302) T PRK12354 161 KRIVEIRAIKWLLEKGHIVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGK--P 238 (302) T ss_pred CEEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCEECCEEEECCCHHHHHHHHHHCCCEEEEEECCCHHHHCCCC--C T ss_conf 55564999999997899899847886013986899686504566340788999987099989998565422024899--6 Q ss_pred CCCCCCCCCHHHHHHC----CCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 4444441159999855----998140999-99999749969995189854799997799878246689 Q gi|254780777|r 180 SSTRFDSLTYNQFIEK----GLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 180 ~ak~i~~is~~e~l~~----G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 239 ~q~~l~~~t~~el~~~~F~~GSM~PKVeAai~Fv~~~g~~aiIt---sl~~~~~al~G~-~GT~I~p~ 302 (302) T PRK12354 239 TQRPLAQATPDELRELGFAAGSMGPKVEAACEFVEATGGIAGIG---SLADILAILAGE-AGTRISPE 302 (302) T ss_pred CHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEC---CHHHHHHHHCCC-CCCEECCC T ss_conf 60023148899997379998883699999999998279879989---799999996799-99686889 |
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>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=99.55 E-value=2.1e-13 Score=102.31 Aligned_cols=228 Identities=22% Similarity=0.284 Sum_probs=139.0 Q ss_pred EEEEEEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--C----CCCCCCCHHHHH Q ss_conf 49999940036853887---77089999999999999997699099982365410233442--0----377775402467 Q gi|254780777|r 7 KRVLLKVSGEALAGISG---FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV--A----ENYLLCERSTVD 77 (242) Q Consensus 7 KrIViKiGGSsL~~~~~---~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~--~----~~~~~~~~~~~~ 77 (242) T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312) T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312) T ss_pred CEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 91899935345347999989899999999999999999855885999718975677999876653254578886468886 Q ss_pred H--HHHHHHHHHHHHHHHHHHHHCCC---CCCCCC-----------------------CHHHHHHHH------------- Q ss_conf 8--88889899999999999761886---411340-----------------------010024566------------- Q gi|254780777|r 78 S--MGMLSTVINALALDLALRKINVP---TVILSS-----------------------IFMPQVCEV------------- 116 (242) Q Consensus 78 ~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~------------- 116 (242) T Consensus 81 AmsQG~IGy~-l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~ 159 (312) T COG0549 81 AMSQGMIGYM-LQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGY 159 (312) T ss_pred HHHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCE T ss_conf 7301289999-999999776425877742699999997689844359998777876999999988663967865499873 Q ss_pred ------------HHHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCC Q ss_conf ------------5432100001100111112465567-------------776215788888641644665147543512 Q gi|254780777|r 117 ------------FSCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVY 171 (242) Q Consensus 117 ------------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiy 171 (242) T Consensus 160 RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy 239 (312) T COG0549 160 RRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVY 239 (312) T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHE T ss_conf 68149999712031788999986798899957887444861897310368981187789999871589899985465111 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHH-HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC Q ss_conf 34322344444444115999985--------599814099-99999974996999518985479999779987824668 Q gi|254780777|r 172 SADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCA-SVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 (242) Q Consensus 172 t~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~-A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~ 241 (242) T Consensus 240 ~n~g--kp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~FV~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312) T COG0549 240 VNFG--KPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312) T ss_pred ECCC--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECC---HHHHHHHHCCC-CCCEECC T ss_conf 1279--955112224699999999864798888731889999999984798369775---98889986467-8858519 |
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>TIGR00746 arcC carbamate kinase; InterPro: IPR003964 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes | Back alignment and domain information |
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Probab=99.47 E-value=5.4e-13 Score=99.76 Aligned_cols=229 Identities=20% Similarity=0.215 Sum_probs=142.7 Q ss_pred EEEEEEEEEEEEEC-CCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHH----HHC---CCCCCCCHHH Q ss_conf 49999940036853-887770--89999999999999997699099982365-4102334----420---3777754024 Q gi|254780777|r 7 KRVLLKVSGEALAG-ISGFGV--DIDSVNRICADIAEVYAKGIEIGIVVGGG-NIFRGSQ----VVA---ENYLLCERST 75 (242) Q Consensus 7 KrIViKiGGSsL~~-~~~~~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~-~~~~~~~----~~~---~~~~~~~~~~ 75 (242) T Consensus 1 k~~VvALGGNAlLqRg~~~s~~~Q~~nv~~t~~~l~~~~~~G~~lvi~HGNGPQVG~LlLQ~~A~~~~~~~~~~PLDV~G 80 (321) T TIGR00746 1 KRVVVALGGNALLQRGEKGSAENQRKNVEQTAPQLVKLIKRGYELVITHGNGPQVGLLLLQNQAADSEKVVPAMPLDVLG 80 (321) T ss_pred CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEC T ss_conf 94889737358863788379889999999999999999861897999847803688899999897603788988743202 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----------------------CCCHHHHHH-----H------------ Q ss_conf 678888898999999999997618864113-----------------------400100245-----6------------ Q gi|254780777|r 76 VDSMGMLSTVINALALDLALRKINVPTVIL-----------------------SSIFMPQVC-----E------------ 115 (242) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-----~------------ 115 (242) T Consensus 81 AmSQG~IGYml~q-~l~~~L~~~g~~~~vaT~~TQt~VD~~DpAF~nPTKpiGPfY~e~EAk~~~a~~~g~~~ke~tdGD 159 (321) T TIGR00746 81 AMSQGMIGYMLQQ-ALNNELPKEGLEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYDEEEAKKRLAAEKGWIVKEDTDGD 159 (321) T ss_pred CCCCCHHHHHHHH-HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCC T ss_conf 0335307899999-999999866899985389998888888888785497516888989999999861787004788876 Q ss_pred ----------------HHHHHHHCCHHHHCCCCCCCCCCCCC---------------CCCCHHHHHHHHHHHCHHHHHHC Q ss_conf ----------------65432100001100111112465567---------------77621578888864164466514 Q gi|254780777|r 116 ----------------VFSCRNAVSYLSQGKVVIFSGGTGNA---------------FLTTDSAAALRASEIGADVILKG 164 (242) Q Consensus 116 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~D~~a~~ia~~~~ad~l~i~ 164 (242) T Consensus 160 ~g~gwRrVVPSP~P~~I~E~~~Ik~L~e~g~iVI~~GGGGvPv~~dg~~kkl~GVeAVIDKDlA~~~LA~~~~AD~L~IL 239 (321) T TIGR00746 160 DGRGWRRVVPSPRPKDIVEAEVIKTLVENGVIVICSGGGGVPVVEDGAEKKLKGVEAVIDKDLASEKLAEEVNADILVIL 239 (321) T ss_pred CCCCCEEECCCCCCCCCEECHHHHHHHHCCEEEEEECCCCEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEE T ss_conf 77830376579999663120778998648827998578820356628943022011032366888988877438744310 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--------CCCCCCHH-HHHHHHHCCC-CEEEEECCCCCHHHHHHCCCC Q ss_conf 7543512343223444444441159999855--------99814099-9999997499-699951898547999977998 Q gi|254780777|r 165 TQVDGVYSADPRVHASSTRFDSLTYNQFIEK--------GLKVMDCA-SVVLARDCSI-PIIVFSIHSPGGIWGGLSGIG 234 (242) Q Consensus 165 tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~--------G~~v~~~~-A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~ 234 (242) T Consensus 240 TDVd~vy~nyg-k-P~e~~L~~~~~~El~~~~~~G~Fa~GSMgPKV~AaI~Fv~~~G~~~AiIt---~L~~~~~~l~g~i 314 (321) T TIGR00746 240 TDVDAVYVNYG-K-PDEKKLREVTVEELEDYEKDGHFAAGSMGPKVEAAIEFVESRGKKRAIIT---SLETAVEALEGKI 314 (321) T ss_pred HHHHHHHHCCC-C-HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC---CHHHHHHHHCCCE T ss_conf 20124522077-8-24788724698899999855886688986038999899871888740005---8589998646973 Q ss_pred CCCEECC Q ss_conf 7824668 Q gi|254780777|r 235 RSTIISG 241 (242) Q Consensus 235 ~GT~I~~ 241 (242) T Consensus 315 aGT~v~~ 321 (321) T TIGR00746 315 AGTRVSK 321 (321) T ss_pred EEEEEEC T ss_conf 2214509 |
The three- enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 100f total cell protein . Carbamate kinase is involved in the last step of the AD pathway, converting carbamoyl phosphate and ADP into ammonia, carbon dioxide and ATP . The second step of the pathway involves the degradation of L-citrulline to carbamoyl phosphate and L-ornithine, using ornithine carbamoyltransferase . The crystal structure of Enterococcus faecium carbamate kinase has been determined to 2.8A resolution . The enzyme exists as a homodimer of two 33kDa subunits. The hallmark of the dimer is a 16-stranded beta-sheet, surrounded by alpha-helices. Each subunit contains an active site within a large crevice.; GO: 0008804 carbamate kinase activity, 0006525 arginine metabolic process. |
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
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Probab=99.45 E-value=6e-12 Score=93.27 Aligned_cols=209 Identities=11% Similarity=0.014 Sum_probs=125.5 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 82499999400368538877708999999999999999769909998236541023344203777754024678888898 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242) T Consensus 34 ~~~faVIKvGGaVl~d-------~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i------~~~~~---~~~~~~~-~~v~ 96 (271) T cd04236 34 WPAFAVLEVDHSVFRS-------LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPD------GTNMS---DLELQAA-RSRL 96 (271) T ss_pred CCCEEEEEECHHHEEC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCHHC------CCCCC---CHHHHHH-HHHH T ss_conf 7876999988131505-------8899999999999998899489993897011------55746---0122567-6663 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-H-----------HHHHHHHCCHHHHCCCCCCCCCC-----CCCCCCCHH Q ss_conf 999999999997618864113400100245-6-----------65432100001100111112465-----567776215 Q gi|254780777|r 85 VINALALDLALRKINVPTVILSSIFMPQVC-E-----------VFSCRNAVSYLSQGKVVIFSGGT-----GNAFLTTDS 147 (242) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~ 147 (242) T Consensus 97 ~~~n~~lV~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIaplG~~~~Gq~~NINADt 176 (271) T cd04236 97 VKDCKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSE 176 (271) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECCCEECCCCCEEEECHHH T ss_conf 79999999999976996245416873377225301376687138607999999978997188252378999888775899 Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----C----CCCCCCHHHHHHHH---HCCCCEE Q ss_conf 78888864164466514754351234322344444444115999985----5----99814099999999---7499699 Q gi|254780777|r 148 AAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----K----GLKVMDCASVVLAR---DCSIPII 216 (242) Q Consensus 148 ~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----~----G~~v~~~~A~~~a~---~~gI~v~ 216 (242) T Consensus 177 aA~aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~~l~~~~~i~~~~~~~i~~i~~~l~~l~~~~s~v 250 (271) T cd04236 177 VTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAV 250 (271) T ss_pred HHHHHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEE T ss_conf 999999864876799980787407789------98822016188999987076512352674778999997177873699 Q ss_pred EEECCCCC-HHHHHHCCCCCCCEE Q ss_conf 95189854-799997799878246 Q gi|254780777|r 217 VFSIHSPG-GIWGGLSGIGRSTII 239 (242) Q Consensus 217 I~ng~~~~-~i~~~l~Ge~~GT~I 239 (242) T Consensus 251 i~~---phsll~ELFTd~G~GTLf 271 (271) T cd04236 251 ITS---AETLLTELFSHKGSGTLF 271 (271) T ss_pred EEC---HHHHHHHHHCCCCCCCCC T ss_conf 837---568789986389877788 |
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
>PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
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Probab=99.24 E-value=2.7e-10 Score=83.06 Aligned_cols=217 Identities=16% Similarity=0.169 Sum_probs=120.9 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HC------CCCCCCCHHHHH Q ss_conf 82499999400368538877708999999999999999769909998236541023344-20------377775402467 Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV-VA------ENYLLCERSTVD 77 (242) Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~-~~------~~~~~~~~~~~~ 77 (242) T Consensus 19 ~~~fAVIKvGGavi~e---------~l~~la~dLafL~~vGl~PVVVHGgGpqI~~~L~~~gIe~~fi~G~RVTd~etl~ 89 (421) T PRK04531 19 PERFAVIKVGGAVLRE---------DLEALTSSLKFLQEVGLTPVVVHGAGPQLDAELSAAGIEKDTVNGLRVTSPEALA 89 (421) T ss_pred CCEEEEEEECHHHHHH---------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH T ss_conf 7618999988799997---------9999999999999879979999389877879999759997677963058888999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH------------HHHHHHHHHCCHHHHCCCCCCCCCCC-----C Q ss_conf 888889899999999999761886411340010024------------56654321000011001111124655-----6 Q gi|254780777|r 78 SMGMLSTVINALALDLALRKINVPTVILSSIFMPQV------------CEVFSCRNAVSYLSQGKVVIFSGGTG-----N 140 (242) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 140 (242) T Consensus 90 vv~~vl~~~-n~~lV~~L~~~G~~A~~i~g~~~~a~~~d~~~~G~VG~V~~Vd~~~I~~~L~~g~IPVIapig~~~~Gq~ 168 (421) T PRK04531 90 IVRKVFQAS-NLKLVEALQQNGARATSITGGVFEAEYLDRDTYGLVGEVKAVLLAAVRSSLRAGKIPVIASLGETPSGQI 168 (421) T ss_pred HHHHHHHHH-HHHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECCCEECCCCCE T ss_conf 999999765-2999999996799757346654350336666676433347786899999997898269815315899978 Q ss_pred CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHC- Q ss_conf 777621578888864164466514754351234322344444444115999985--------59981409999999974- Q gi|254780777|r 141 AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDC- 211 (242) Q Consensus 141 ~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~- 211 (242) T Consensus 169 lNINAD~aA~aLA~aL~a~KlIfLt~~gGi~d~~------gk~Is~InL~~eyd~lm~~~w~~~g~klkl~~ik~LLd~L 242 (421) T PRK04531 169 LNINADVAANELVSILQPYKIIFLTGTGGLLDAD------GNKISSINLSTEFDQLMQQPSINGGMRLKLEQIKDLLDRL 242 (421) T ss_pred EEECHHHHHHHHHHHCCCCEEEEECCCCCEECCC------CCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 8405999999999862864699971678606789------9886357544035545205103566899899999998519 Q ss_pred --CCCEEEEECCCCCHHHHHH-CCCCCCCEEC Q ss_conf --9969995189854799997-7998782466 Q gi|254780777|r 212 --SIPIIVFSIHSPGGIWGGL-SGIGRSTIIS 240 (242) Q Consensus 212 --gI~v~I~ng~~~~~i~~~l-~Ge~~GT~I~ 240 (242) T Consensus 243 P~~SSV~It---~p~~L~kELFT~~GsGTLir 271 (421) T PRK04531 243 PLESSVSIT---SPSDLAKELFTHKGSGTLVR 271 (421) T ss_pred CCCCEEEEE---CHHHHHHHHCCCCCCCEEEE T ss_conf 986607870---89998887626799960486 |
|
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro: IPR010167 This entry represents a clade of amino-acid N-acetyltransferases, or N-acetylglutamate synthase, which is the product of the argA gene and the first enzyme in arginine biosynthesis | Back alignment and domain information |
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Probab=98.86 E-value=2.7e-07 Score=64.61 Aligned_cols=221 Identities=16% Similarity=0.172 Sum_probs=132.1 Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-------HHCCCCCCCCHHHHHHH Q ss_conf 49999940036853887770899999999999999976990999823654102334-------42037777540246788 Q gi|254780777|r 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ-------VVAENYLLCERSTVDSM 79 (242) Q Consensus 7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~-------~~~~~~~~~~~~~~~~~ 79 (242) T Consensus 18 KT~Vvgl~g~~v~~~~--------l~~~v~Di~LLh~LGv~lVLvHGaRPq~~~~la~~~~~p~Y~~G~RvTD~asLe~~ 89 (439) T TIGR01890 18 KTFVVGLGGELVEDDN--------LGNIVADIALLHSLGVRLVLVHGARPQIEERLAARGRTPHYHRGLRVTDEASLELV 89 (439) T ss_pred CEEEEECCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHH T ss_conf 6699842840014444--------24599999999758918999708852689999962897870322571356567789 Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCC-----CC-----CCCCHHHHH----------HHHHHHHHHCCHHHHCCCCCCC--- Q ss_conf 8889899999999999761-8864-----11-----340010024----------5665432100001100111112--- Q gi|254780777|r 80 GMLSTVINALALDLALRKI-NVPT-----VI-----LSSIFMPQV----------CEVFSCRNAVSYLSQGKVVIFS--- 135 (242) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~-----~~-----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--- 135 (242) T Consensus 90 ~~aaG~lr~~ieA~Ls~~~~~~pmaGsr~~vvSGNfvtArPiGv~~GvDy~h~G~vRk~D~~~i~~~Ld~g~IVLL~PLG 169 (439) T TIGR01890 90 KQAAGELRLAIEARLSMSLSNTPMAGSRLSVVSGNFVTARPIGVIEGVDYEHTGVVRKIDTEGIRRLLDAGSIVLLSPLG 169 (439) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCEEECCCCCEECCCEEHHHHHHHHHHHCCCCEEECCCCC T ss_conf 99876688888888752124678888531356243332033101058662032745110088898652078767517654 Q ss_pred --CCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----CCCCC---------- Q ss_conf --46556777621578888864164466514754351234322344444444115999985----59981---------- Q gi|254780777|r 136 --GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----KGLKV---------- 199 (242) Q Consensus 136 --~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----~G~~v---------- 199 (242) T Consensus 170 ~S~tG~~FnL~~e~vAt~~A~~L~AdKL~~~t~~~Gi~d------~~G~l~~eL~pq~~~~~~~~l~~~~aPdde~~~~~ 243 (439) T TIGR01890 170 YSPTGEIFNLDMEDVATSVAIELKADKLIYFTEEPGILD------ADGKLVAELSPQEVESLVERLGEETAPDDELSADT 243 (439) T ss_pred CCCCCHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC------CCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 366400004406889999998625540454058887246------56524232487899999998505789733322558 Q ss_pred CC-HHHHHHHHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEECC Q ss_conf 40-999999997499-699951898547999-9779987824668 Q gi|254780777|r 200 MD-CASVVLARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTIISG 241 (242) Q Consensus 200 ~~-~~A~~~a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I~~ 241 (242) T Consensus 244 ~~lL~~a~~A~~GGV~R~hlv~ya~DGsLL~ELF~~~G~GT~v~~ 288 (439) T TIGR01890 244 ARLLSAAVKACRGGVRRSHLVSYAEDGSLLQELFTRDGIGTLVSK 288 (439) T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHH T ss_conf 999999999986797514422623225899999861893037888 |
This enzyme displays more diversity between bacteria, fungi and mammals than other enzymes in arginine metabolism, and N-acetylglutamate itself can have different roles in different taxonomic groups: in prokaryotes, lower eukaryotes and plants it is the first intermediate in arginine biosynthesis, while in vertebrates it is an allosteric cofactor for the first enzyme in the urea cycle . In bacteria, arginine can regulate ornithine biosynthesis via a feedback inhibition mechanism . This enzyme may also act on aspartate.; GO: 0004042 amino-acid N-acetyltransferase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm. |
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
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Probab=99.95 E-value=8.8e-28 Score=190.93 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=87.9 Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCC Q ss_conf 5567776215788888641644665147543512343223444--444441159999855---99814099999999749 Q gi|254780777|r 138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS--STRFDSLTYNQFIEK---GLKVMDCASVVLARDCS 212 (242) Q Consensus 138 ~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~--ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~g 212 (242) T Consensus 207 tTLGRgGSDySAailA~~l~A~~~~IWtDV~-v~tADPr~V~~~~a~~i~~lSy~EA~ELayfGAkVlHP~Ti~P~~~~~ 285 (304) T cd04248 207 REFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG 285 (304) T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC T ss_conf 6507997178999999976999899985066-616897957877663606479999999997797215989999999869 Q ss_pred CCEEEEECCCCCHHHHHHCCCCCCCEEC Q ss_conf 9699951898547999977998782466 Q gi|254780777|r 213 IPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242) Q Consensus 213 I~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242) T Consensus 286 IPi~IkNt~~P---------~~~GT~Is 304 (304) T cd04248 286 IPLRVKNTFEP---------DHPGTLIT 304 (304) T ss_pred CCEEEECCCCC---------CCCCCEEC T ss_conf 98898068998---------99983439 |
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
>PRK09181 aspartate kinase; Validated | Back alignment and domain information |
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Probab=99.95 E-value=1.9e-27 Score=188.84 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=88.1 Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCC Q ss_conf 55677762157888886416446651475435123432234--44444441159999855---99814099999999749 Q gi|254780777|r 138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVH--ASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCS 212 (242) Q Consensus 138 ~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~--~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~g 212 (242) T Consensus 214 ~tlgRggSD~ta~~ia~~l~a~~~~i~~dv~-v~taDP~~v~~~~~~~i~~~sy~ea~ela~~Ga~vlhp~~~~p~~~~~ 292 (476) T PRK09181 214 RTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG 292 (476) T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEEECC-EECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCC T ss_conf 4358884599999999984898999996365-312798843654344735268999999986598640806789999759 Q ss_pred CCEEEEECCCCCHHHHHHCCCCCCCEECCC Q ss_conf 969995189854799997799878246689 Q gi|254780777|r 213 IPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242) Q Consensus 213 I~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242) T Consensus 293 Ipi~v~nt~~p---------~~~GT~I~~~ 313 (476) T PRK09181 293 IPLRIKNTFEP---------EHPGTLITKD 313 (476) T ss_pred CCEEEEECCCC---------CCCCEEEECC T ss_conf 96899706899---------9997599468 |
|
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039 This entry describes a small family of highly conserved proteins (>60 0dentity) | Back alignment and domain information |
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Probab=91.64 E-value=0.4 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=38.3 Q ss_pred CEEEEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 24999994003685388-77708999999999999999769909998236 Q gi|254780777|r 6 YKRVLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGG 54 (242) Q Consensus 6 ~KrIViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg 54 (242) T Consensus 1 MK~lv~DLD~TIT~~~~~DY-~N~~P~~~Vi~~L~~YK~lGF~i~IsssR 49 (126) T TIGR01689 1 MKRLVMDLDNTITLTENGDY-ANVKPIKAVIEKLREYKALGFEIVISSSR 49 (126) T ss_pred CCEEEEECCCCEEECCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 94478743783631257873-23550689999999887468789886565 |
Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this subfamily.. |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | ||
3ek5_A | 243 | Unique Gtp-Binding Pocket And Allostery Of Ump Kina | 7e-48 | |
2bnd_A | 241 | The Structure Of E.Coli Ump Kinase In Complex With | 2e-45 | |
2bne_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 3e-45 | |
3nwy_A | 281 | Structure And Allosteric Regulation Of The Uridine | 6e-44 | |
2a1f_A | 247 | Crystal Structure Of Uridylate Kinase Length = 247 | 3e-43 | |
2bnf_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 2e-42 | |
1z9d_A | 252 | Crystal Structure Of A Putative Uridylate Kinase (U | 6e-40 | |
1ybd_A | 239 | Crystal Structure Analysis Of Uridylate Kinase From | 8e-36 | |
2jjx_A | 255 | The Crystal Structure Of Ump Kinase From Bacillus A | 9e-33 | |
2va1_A | 256 | Crystal Structure Of Ump Kinase From Ureaplasma Par | 3e-28 | |
3l76_A | 600 | Crystal Structure Of Aspartate Kinase From Synechoc | 2e-25 | |
2j5t_A | 357 | Glutamate 5-Kinase From Escherichia Coli Complexed | 3e-23 | |
2w21_A | 259 | Crystal Structure Of The Aminoacid Kinase Domain Of | 5e-23 | |
2j5t_G | 358 | Glutamate 5-Kinase From Escherichia Coli Complexed | 5e-23 | |
2j5t_C | 357 | Glutamate 5-Kinase From Escherichia Coli Complexed | 6e-23 | |
2j5t_F | 356 | Glutamate 5-Kinase From Escherichia Coli Complexed | 6e-23 | |
2j5t_E | 367 | Glutamate 5-Kinase From Escherichia Coli Complexed | 6e-23 | |
2j5v_A | 367 | Glutamate 5-Kinase From Escherichia Coli Complexed | 7e-23 | |
2j5t_B | 354 | Glutamate 5-Kinase From Escherichia Coli Complexed | 1e-22 | |
3ab4_A | 421 | Crystal Structure Of Feedback Inhibition Resistant | 2e-18 | |
3aaw_A | 421 | Crystal Structure Of Aspartate Kinase From Coryneba | 2e-18 | |
2brx_A | 244 | Ump Kinase From Pyrococcus Furiosus Without Ligands | 7e-18 | |
2ji5_A | 227 | Structure Of Ump Kinase From Pyrococcus Furiosus Co | 4e-17 | |
2bmu_A | 226 | Ump Kinase From Pyrococcus Furiosus Complexed With | 7e-16 | |
2bri_A | 225 | Ump Kinase From Pyrococcus Furiosus Complexed With | 7e-16 | |
2ako_A | 251 | Crystal Structure Of Glutamate 5-Kinase From Campyl | 4e-14 | |
2ij9_A | 219 | Crystal Structure Of Uridylate Kinase From Archaeog | 6e-14 | |
2ogx_B | 270 | The Crystal Structure Of The Molybdenum Storage Pro | 2e-13 | |
3ll9_A | 269 | X-Ray Structures Of Isopentenyl Phosphate Kinase Le | 3e-13 | |
2cdq_A | 510 | Crystal Structure Of Arabidopsis Thaliana Aspartate | 6e-11 | |
2j4j_A | 226 | Crystal Structure Of Uridylate Kinase From Sulfolob | 9e-11 | |
3k4o_A | 266 | Crystal Structure Of Isopentenyl Phosphate Kinase F | 2e-08 | |
2ogx_A | 276 | The Crystal Structure Of The Molybdenum Storage Pro | 5e-05 | |
3lkk_A | 249 | Crystal Structure Of The Isopentenyl Phosphate Kina | 0.003 | |
2hmf_A | 469 | Structure Of A Threonine Sensitive Aspartokinase Fr | 2e-14 | |
3c1n_C | 473 | Crystal Structure Of Allosteric Inhibition Threonin | 2e-14 | |
2j0x_B | 446 | Crystal Structure Of E. Coli Aspartokinase Iii In C | 8e-07 | |
2j0w_A | 448 | Crystal Structure Of E. Coli Aspartokinase Iii In C | 8e-07 | |
2j0x_A | 449 | Crystal Structure Of E. Coli Aspartokinase Iii In C | 8e-07 | |
1e19_A | 314 | Structure Of The Carbamate Kinase-Like Carbamoyl Ph | 0.001 |
>gi|218766699|pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram-Negative Phytopathogen Bacterium Length = 243 | Back alignment and structure |
Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 MS+ Y+R+LLK+SGEAL G +G+D +NR+ ++ E G ++ +V+GGGNIFRG Sbjct: 4 MSELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 + + A +R T D MGML+TVINALA+ AL K+ ++S+I + VCE F R Sbjct: 64 AGLAASG---MDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRR 120 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 A+ +L +G++ IF+ GTGN F TTDS AALRA EIGAD++LK T+VDGVY DP+ H+ Sbjct: 121 RAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSD 180 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + R+DSLTY++ I +GL+VMD A+ LARD +P+ +F + PG + L G T++ Sbjct: 181 AVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQ 240 Query: 241 G 241 G Sbjct: 241 G 241 |
>gi|75766453|pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241 | Back alignment and structure |
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS 61 + YKR+LLK+SGEAL G GFG+D ++R+ +I E+ GI++G+V+GGGN+FRG+ Sbjct: 5 AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGA 64 Query: 62 QVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121 + R D MGML+TV+N LA+ AL + V ++S+I + VC+ +S Sbjct: 65 GLAKAG---MNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAE 121 Query: 122 AVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 A+S L +VVI S GTGN F TTDSAA LR EI A+V+LK T+VDGV++ADP ++ Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181 Query: 182 TRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 T ++ LTY++ +EK LKVMD A+ LARD +PI VF+++ PG + + G T+I+ Sbjct: 182 TMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT 240 |
>gi|66361575|pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241 | Back alignment and structure |
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS 61 + YKR+LLK+SGEAL G GFG+D ++R+ +I E+ GI++G+V+GGGN+FRG+ Sbjct: 5 AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGA 64 Query: 62 QVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121 + R D MGML+TV+N LA+ AL + V ++S+I + VC+ +S Sbjct: 65 GLAKAG---MNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAE 121 Query: 122 AVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 A+S L +VVI S GTGN F TTDSAA LR EI A+V+LK T+VDGV++ADP ++ Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181 Query: 182 TRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 T ++ LTY++ +EK LKVMD A+ LARD +PI VF+++ PG + + G T+I+ Sbjct: 182 TMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT 240 |
>gi|304446039|pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281 | Back alignment and structure |
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 142/235 (60%), Gaps = 4/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 Y RVLLK+ GE G G+D D V ++ IA+V G++I +V+GGGN FRG+Q+ Sbjct: 50 YSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ 108 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 ER+ D MGML TV+N+LAL L K + T + ++I M QV E + AV + Sbjct: 109 LG---MERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRH 165 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 L +G+VVIF G G + +TD+ AA RA EIGADV+L VDGV++ DPRV+ + Sbjct: 166 LEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLT 225 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 ++++ + +++GL+V D + L D +PI+VF++ + G I + G T+++ Sbjct: 226 AVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 |
>gi|71042600|pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247 | Back alignment and structure |
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 3/239 (1%) Query: 2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS 61 S YKR+LLK+SGEAL G G G+D ++R+ +I E+ G+E+ +V+GGGN+FRG+ Sbjct: 4 SQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGA 63 Query: 62 QVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121 ++ R D MGML+TV+N LA+ +L + +V ++S+ + +C+ ++ Sbjct: 64 KLAKAG---MNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSE 120 Query: 122 AVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 A+ L + +VVIFS GTGN F TTDS A LR EI ADV+LK T+VDGVY DP + + Sbjct: 121 AIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDA 180 Query: 182 TRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + +L+Y + I+K LKVMD ++ LARD +PI VF++ PG + ++G T I Sbjct: 181 KLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239 |
>gi|66361579|pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241 | Back alignment and structure |
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 3/239 (1%) Query: 2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS 61 + YKR+LLK+SGEAL G GFG+D ++R +I E+ GI++G+V+GGGN+FRG+ Sbjct: 5 AKPVYKRILLKLSGEALQGTEGFGIDASILDRXAQEIKELVELGIQVGVVIGGGNLFRGA 64 Query: 62 QVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN 121 + R D G L+TV N LA AL + V + S+I + VC+ +S Sbjct: 65 GLAKAGX---NRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPLNGVCDSYSWAE 121 Query: 122 AVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 A+S L +VVI S GTGN F TTDSAA LR EI A+V+LK T+VDGV++ADP ++ Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181 Query: 182 TRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 T ++ LTY++ +EK LKV D A+ LARD +PI VF+ + PG + + G T+I+ Sbjct: 182 TXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALRRVVXGEKEGTLIT 240 |
>gi|66361391|pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump- Kinase) From Streptococcus Pyogenes Length = 252 | Back alignment and structure |
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 144/241 (59%), Gaps = 4/241 (1%) Query: 3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ 62 + Y+R+L+K+SGEALAG G G+DI +V I +IAEV+ G++I +V+GGGN++RG Sbjct: 4 EPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRG-- 61 Query: 63 VVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNA 122 +R D G L TV NAL +L+ V T + ++I V E + A Sbjct: 62 -EPAADAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPXQNVAEPYIRGRA 120 Query: 123 VSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASS 181 + +L + ++V+F G G+ + +TD+ AALRA+EI AD IL VDGVY+ADP+ A++ Sbjct: 121 LRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGVDGVYNADPKKDANA 180 Query: 182 TRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 +FD LT+ + I++GLK+ D + L+ D I ++VF+ + G I + G T +S Sbjct: 181 VKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQRVVFGEHIGTTVSN 240 Query: 242 E 242 + Sbjct: 241 K 241 |
>gi|61680562|pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239 | Back alignment and structure |
Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 3/238 (1%) Query: 3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ 62 YKRVLLK+SGE+L G FG++ D++ + +IAEV G+++GIVVGGGNIFRG Sbjct: 4 QIKYKRVLLKLSGESLXGSDPFGINHDTIVQTVGEIAEVVKXGVQVGIVVGGGNIFRGVS 63 Query: 63 VVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNA 122 A +R+T D G +TV NALAL A + + + S++ Q+ E ++ A Sbjct: 64 AQA---GSXDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYARPKA 120 Query: 123 VSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASST 182 + YL +GKVVIF+ GTGN F TTD+AAALR +E DV LK T VDGVY+ADP+ S+T Sbjct: 121 IQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKKDPSAT 180 Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 R++++T+++ + K LKV D + L R+ + I+VF I G + ++G T++ Sbjct: 181 RYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 |
>gi|194708941|pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255 | Back alignment and structure |
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 5/240 (2%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 PYKRVL+K+SG ALA +G + + I +I + GIE+ IV+GGGNIFRG Sbjct: 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE 70 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLAL-RKINVPTVILSSIFMPQVCEVFSCRNAV 123 +R D++G L T+IN+L L L K N +++SI V E + AV Sbjct: 71 EWG---IDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAV 127 Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASST 182 +L G +VIF GG G F+TTD + RA E+ +D IL Q VDGV+++DP+ + S+ Sbjct: 128 HHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAK 187 Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 + L YN + + ++VMD A+++LARD ++P VF+ PG + G T+I+ + Sbjct: 188 MYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 |
>gi|158431154|pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256 | Back alignment and structure |
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 142/238 (59%), Gaps = 5/238 (2%) Query: 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 +R+++K+SG L +D +N + I ++ K I + IV+GGGNI+RGS Sbjct: 22 MRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYI-VSIVLGGGNIWRGSI- 79 Query: 64 VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123 L +R+ D+MGM++T+IN LAL+ AL +NV T++LS+I ++ S N Sbjct: 80 --AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIK 137 Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASST 182 + + +V+IF GTG + TTDS AA+RA+E + +IL G VDGVY +DP+++ ++ Sbjct: 138 KAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQ 197 Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 ++ +T+N + + LKVMD ++ L ++ +I ++VF+I P I L + TI+S Sbjct: 198 FYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 |
gi|297787670|pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600 | Back alignment and structure |
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 34/244 (13%) Query: 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR--GSQVVAE 66 ++ K G ++ ++ + + I G + +VV + + Sbjct: 4 IVQKFGGTSVGT-------VERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQ 56 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 R +D + ++ L LAL++I+ P + L+ + V E R + + Sbjct: 57 ISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEI 116 Query: 127 SQGKVVIFS--------------------GGTGNAFLTTDSAAALRASEIGADVILKGTQ 166 ++ T +D++A A+ + AD T Sbjct: 117 RPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTD 176 Query: 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFS--IH 221 V G+ + DPR+ + +T ++ +E G KV+ +V +AR+ IP++V S Sbjct: 177 VPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD 236 Query: 222 SPGG 225 PG Sbjct: 237 EPGT 240 |
>gi|268612106|pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The Glutamate 5 Kinase Of Escherichia Coli Length = 259 | Back alignment and structure |
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 85/261 (32%), Gaps = 22/261 (8%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-- 58 MSD + +++K+ L G ++ + + A+++A G I IV G Sbjct: 1 MSDS--QTLVVKLGTSVLTG-GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGR 57 Query: 59 RGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFS 118 + + + ++G + L ++ + + + + Sbjct: 58 EHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNA 117 Query: 119 CRNAVSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 + L V + + D+ +AL A GAD +L T G+Y+A Sbjct: 118 RDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTA 177 Query: 174 DPRVHASSTRFDSLTYNQF------------IEKGLKVMDCASVVLARDCSIPIIVFSIH 221 DPR + + + + G + +A I I+ + Sbjct: 178 DPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGS 237 Query: 222 SPGGIWGGLSGIGRSTIISGE 242 PG I + GI T+ + Sbjct: 238 KPGVIGDVMEGISVGTLFHAQ 258 |
>gi|134104656|pdb|2J5V|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With Glutamyl-5-Phosphate And Pyroglutamic Acid Length = 367 | Back alignment and structure |
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 85/261 (32%), Gaps = 22/261 (8%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-- 58 MSD + +++K+ L G ++ + + A+++A G I IV G Sbjct: 1 MSDS--QTLVVKLGTSVLTG-GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGR 57 Query: 59 RGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFS 118 + + + ++G + L ++ + + + + Sbjct: 58 EHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNA 117 Query: 119 CRNAVSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 + L V + + D+ +AL A GAD +L T G+Y+A Sbjct: 118 RDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTA 177 Query: 174 DPRVHASSTRFDSLTYNQF------------IEKGLKVMDCASVVLARDCSIPIIVFSIH 221 DPR + + + + G + +A I I+ + Sbjct: 178 DPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGS 237 Query: 222 SPGGIWGGLSGIGRSTIISGE 242 PG I + GI T+ + Sbjct: 238 KPGVIGDVMEGISVGTLFHAQ 258 |
>gi|299688892|pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 41/257 (15%) Query: 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR--GSQVVAE 66 V+ K G +L + + + I G ++ +V ++ A Sbjct: 4 VVQKYGGSSLES-------AERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAA 56 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR------ 120 + +D + I+ + +A+ + + + Sbjct: 57 VNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV 116 Query: 121 -------------NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV 167 + QG T +D+ A A+ + ADV + V Sbjct: 117 TPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDV 176 Query: 168 DGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPG 224 DGVY+ADPR+ ++ + + L++ + +E G K++ SV AR ++P+ V S +S Sbjct: 177 DGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSND 236 Query: 225 GIWGGLSGIGRSTIISG 241 T+I+G Sbjct: 237 ----------PGTLIAG 243 |
gi|299688865|pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 41/257 (15%) Query: 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR--GSQVVAE 66 V+ K G +L + + + I G ++ +V ++ A Sbjct: 4 VVQKYGGSSLES-------AERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAA 56 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR------ 120 + +D + I+ + +A+ + + + Sbjct: 57 VNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV 116 Query: 121 -------------NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV 167 + QG T +D+ A A+ + ADV + V Sbjct: 117 TPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDV 176 Query: 168 DGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPG 224 DGVY+ADPR+ ++ + + L++ + +E G K++ SV AR ++P+ V S +S Sbjct: 177 DGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSND 236 Query: 225 GIWGGLSGIGRSTIISG 241 T+I+G Sbjct: 237 ----------PGTLIAG 243 |
>gi|73536289|pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands Length = 244 | Back alignment and structure |
Score = 94.9 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 28/243 (11%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R++ + G L + DID + I + +V E+ +VVGGG + R VAE Sbjct: 21 RIVFDIGGSVLVPENP---DIDFIKEIAYQLTKVSED-HEVAVVVGGGKLARKYIEVAEK 76 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E + D +G+ T NA+ L ALR+ P V+ ++ + Sbjct: 77 FNSSE-TFKDFIGIQITRANAMLLIAALREKAYPVVVE--------------DFWEAWKA 121 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ ++ + + Sbjct: 122 VQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKM 181 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + +E K V+D + + I IV ++ + G T Sbjct: 182 KPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTT 241 Query: 239 ISG 241 I Sbjct: 242 IEP 244 |
>gi|158428975|pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed With Utp Length = 227 | Back alignment and structure |
Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 28/243 (11%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R++ + G L + DID + I + +V E+ +VVGGG + R VAE Sbjct: 4 RIVFDIGGSVLVPENP---DIDFIKEIAYQLTKVSED-HEVAVVVGGGKLARKYIEVAEK 59 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E + D +G+ T NA+ L ALR+ P V+ ++ + Sbjct: 60 FNSSE-TFKDFIGIQITRANAMLLIAALREKAYPVVVE--------------DFWEAWKA 104 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ ++ + + Sbjct: 105 VQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKM 164 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + +E K V+D + + I IV ++ + G T Sbjct: 165 KPEELLEIVGKGIEKAGSSSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTT 224 Query: 239 ISG 241 I Sbjct: 225 IEP 227 |
>gi|73536269|pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Ump And Its Substrate Analog Amppnp Length = 226 | Back alignment and structure |
Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 28/243 (11%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R++ + G L + DID + I + +V E+ +VVGGG + R VAE Sbjct: 3 RIVFDIGGSVLVPENP---DIDFIKEIAYQLTKVSED-HEVAVVVGGGKLARKYIEVAEK 58 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E + D +G+ T NA L ALR+ P V+ ++ + Sbjct: 59 FNSSE-TFKDFIGIQITRANAXLLIAALREKAYPVVVE--------------DFWEAWKA 103 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ ++ + Sbjct: 104 VQLKKIPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKX 163 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + +E K V+D + + I IV ++ + G T Sbjct: 164 KPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTT 223 Query: 239 ISG 241 I Sbjct: 224 IEP 226 |
>gi|73536282|pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Analog Amppnp Length = 225 | Back alignment and structure |
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 28/243 (11%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 R++ + G L + DID + I + +V E+ +VVGGG + R VAE Sbjct: 2 RIVFDIGGSVLVPENP---DIDFIKEIAYQLTKVSED-HEVAVVVGGGKLARKYIEVAEK 57 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E + D +G+ T NA L ALR+ P V+ ++ + Sbjct: 58 FNSSE-TFKDFIGIQITRANAXLLIAALREKAYPVVVE--------------DFWEAWKA 102 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ ++ + Sbjct: 103 VQLKKIPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKX 162 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + +E K V+D + + I IV ++ + G T Sbjct: 163 KPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTT 222 Query: 239 ISG 241 I Sbjct: 223 IEP 225 |
>gi|75766266|pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter Jejuni Length = 251 | Back alignment and structure |
Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 22/253 (8%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KR+++KV ++ + + + + + A +A++ K E+ +V +++ + Sbjct: 2 KRIVVKVGSHVISEENT--LSFERLKNLVAFLAKLXEK-YEVILVTSAAISAGHTKLDID 58 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 L + + ++G + L K+ ++ F + + + Sbjct: 59 RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDXXI 118 Query: 127 SQGKVVIFSGGT-----GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 + G + I + F DS +A AD+++ + +DG Y +P + + Sbjct: 119 NLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDA 178 Query: 182 TRFDSLTYN------------QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWG- 228 R + +T+ G V + + + + S Sbjct: 179 KRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKXFLASGFDLSVAKTF 238 Query: 229 GLSGIGR-STIIS 240 L T+ Sbjct: 239 LLEDKQIGGTLFE 251 |
>gi|118138442|pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219 | Back alignment and structure |
Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 95/243 (39%), Gaps = 34/243 (13%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 K V+L + G L+ S + + I V + ++ +VVGGG + R A Sbjct: 1 MK-VVLSLGGSVLSNES------EKIREFAKTIESVAQQ-NQVFVVVGGGKLAREYIKSA 52 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 E + D +G+ +T +NA+ L A +P + + Sbjct: 53 RELGASE-TFCDYIGIAATRLNAMLLISA---------------IPSAAKKVPVDFMEAE 96 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 + G TTD+ AAL A I ADV + T VDGVYSADP+ S+ ++D Sbjct: 97 ELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYD 156 Query: 186 SLTYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRS 236 L+ Q +E + V+D + + I V +P I + G Sbjct: 157 RLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVG 215 Query: 237 TII 239 T+I Sbjct: 216 TVI 218 |
>gi|146387020|pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 270 | Back alignment and structure |
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 20/241 (8%) Query: 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYL 69 ++K+ G+++ V + +I ++ I G G R +A L Sbjct: 40 VIKIGGQSVIDRGRAAVYP-----LVDEIVAARK-NHKLLIGTGAGTRARHLYSIAAG-L 92 Query: 70 LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF-MPQVCEVFSCRNAVSYLSQ 128 + +G NA L L K +P V + + +P + Sbjct: 93 GLPAGVLAQLGSSVADQNAAXLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGXPPY 152 Query: 129 GKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188 + TD+ L A + G + DG+Y+A+P+ +T ++ Sbjct: 153 KLWXRPAAEGVIPPYRTDAGCFLLAEQFGCKQXIFVKDEDGLYTANPKTSKDATFIPRIS 212 Query: 189 YNQFIEKGLK-------VMDC-ASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 ++ KGL V+D S R+ + V + PG + L+G TII+ Sbjct: 213 VDEXKAKGLHDSILEFPVLDLLQSAQHVRE----VQVVNGLVPGNLTRALAGEHVGTIIT 268 Query: 241 G 241 Sbjct: 269 A 269 |
>gi|297343038|pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase Length = 269 | Back alignment and structure |
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 82/264 (31%), Gaps = 30/264 (11%) Query: 9 VLLKVSGEALA--GISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI--FRGSQVV 64 ++LK+ G + +D D++ RI ++I + I G ++ Sbjct: 5 IILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLXIVHGAGSFGHPFAGEYRIG 64 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124 +E + L+ + + S + R + + Sbjct: 65 SEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSXQPSAFIRAHAGRISHA 124 Query: 125 YLSQGKVVIFSGGTGNAFLT---------------TDSAAALRASEIGADVILKGTQVDG 169 +S + + G + D + + + ++ GT VDG Sbjct: 125 DISLIRSYLEEGXVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLXPERVILGTDVDG 184 Query: 170 VYSADPRVHASSTRFDSLTYNQFIE----------KGLKVMDCASVVLARDCSIPIIVFS 219 VY+ +P+ H + D + +E G V ++L + + + + Sbjct: 185 VYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIRELLLLAEKGVESEIIN 244 Query: 220 IHSPGGIWGGLSGIGR-STIISGE 242 PG I L G T I+G+ Sbjct: 245 AAVPGNIERALLGEEVRGTRITGK 268 |
>gi|313507235|pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510 | Back alignment and structure |
Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 77/302 (25%), Gaps = 80/302 (26%) Query: 10 LLKVSGEALAGISGFGVDIDSV---------------------------NRI------CA 36 ++K G ++A D + + + Sbjct: 30 VMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNAS 89 Query: 37 DIAEV-----------YAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTV 85 +I E+ I+ +++ T D + Sbjct: 90 EIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGEC 149 Query: 86 INALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV----------SYLSQGKV---- 131 ++ L I V + + + + Sbjct: 150 LSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAV 209 Query: 132 ----------VIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 T +D A +G I VDGV + DP ++ + Sbjct: 210 PIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRA 269 Query: 182 TRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 T LT+++ E G +V+ S+ AR+ IP+ V + ++P TI Sbjct: 270 TPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---------KAPGTI 320 Query: 239 IS 240 I+ Sbjct: 321 IT 322 |
gi|134104608|pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus Solfataricus In Complex With Ump And Amppcp To 2.1 Angstrom Resolution Length = 226 | Back alignment and structure |
Score = 71.4 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 36/246 (14%) Query: 9 VLLKVSGEALAGISGFGVDIDSVNRIC---ADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 ++LK+SG D D+V+ + I E+ G +GIV GGG+ R +A Sbjct: 3 IILKISG--------KFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLA 54 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 + E + +D +G+ ++ +NA + +L+ + V S Sbjct: 55 REIGIGE-AYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEF--------------I 99 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 + G +T + AAL A + ++ T VDGVY DPR++A Sbjct: 100 QDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIP 159 Query: 186 SLTYNQ---FIEKGLKV-------MDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGR 235 LT +E V +D ++ + I +IV + I L G Sbjct: 160 HLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEV 219 Query: 236 STIISG 241 S+II Sbjct: 220 SSIIEP 225 |
>gi|295789369|pdb|3K4O|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From Methanocaldococcus Jannaschii Length = 266 | Back alignment and structure |
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 82/257 (31%), Gaps = 31/257 (12%) Query: 10 LLKVSGEALAGIS-GFGVDIDSVNRICADIAEV----YAKGIEIGIVVGGGNIFRGSQVV 64 +LK+ G L+ + + + D++ RI +I + EI +++ G G V Sbjct: 10 ILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVA 69 Query: 65 AENYLLCERSTVDSMGMLSTVINALALD-------LALRKINVPTVILSSIFMPQVCEVF 117 + + + + A+ L+ ++P V + + Sbjct: 70 KKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKL 129 Query: 118 SCR--------NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDG 169 ++ G ++ D A+E+ AD+IL T VDG Sbjct: 130 IFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDG 189 Query: 170 V--YSADPRVHASSTRFDSLTYNQFIEKGLKVMDCAS-----VVLARDCSIPIIVFSIHS 222 V + + + + L Y G +D + + R VF+ + Sbjct: 190 VLIDNKPIKRIDKNNIYKILNYL----SGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNK 245 Query: 223 PGGIWGGLSGIGRSTII 239 I+ L G T I Sbjct: 246 ANNIYKALLGEVEGTEI 262 |
>gi|146387019|pdb|2OGX|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 276 | Back alignment and structure |
Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 21/239 (8%) Query: 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYL 69 ++K+ G G D++ + ++ ++ + + I+ G G R V L Sbjct: 43 VVKIGGRV--XDRG----ADAILPLVEELRKLLPE-HRLLILTGAGVRARHVFSVGL-DL 94 Query: 70 LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQG 129 ++ + N L L V V ++ + + R V Sbjct: 95 GLPVGSLAPLAASEAGQNGHILAAXLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPP 154 Query: 130 KVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPR--VHASSTRFDSL 187 G+ D+ A L A GA + VDG+Y+ADP + Sbjct: 155 YHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPET 214 Query: 188 TYNQFIEKGL------KVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 + + ++D + + V + PG + L G T+I Sbjct: 215 SATDLAKSEGPLPVDRALLDVXATARHIER----VQVVNGLVPGRLTAALRGEHVGTLI 269 |
>gi|297343032|pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase Substr Complex Length = 249 | Back alignment and structure |
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 72/245 (29%), Gaps = 18/245 (7%) Query: 10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYL 69 +LK+ G + S + I + + + + +V GGG+ + Sbjct: 7 ILKIGGSVITDKSAY--RTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPG 64 Query: 70 LCERSTVDSMGMLSTVINAL------ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAV 123 + ++ + L A+ + + Sbjct: 65 PKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIRYIDA 124 Query: 124 SYLSQGK-VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS-- 180 ++ V + D A A + DV + T VDG+YS DP+ + Sbjct: 125 GFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAV 184 Query: 181 --STRFDSLTYNQFIE--KGLKVMDCASVVLARDCSIP--IIVFSIHSPGGIWGGLSGIG 234 ++T+++ G S+V S+ + + + + P I Sbjct: 185 LLRDIDTNITFDRVQNDVTGGIGKKFESMVK-MKSSVKNGVYLINGNHPERIGDIGKESF 243 Query: 235 RSTII 239 T+I Sbjct: 244 IGTVI 248 |
>gi|118137941|pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469 | Back alignment and structure |
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%) Query: 138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-- 195 T +D +AAL + AD+I T V GVY+ DPR+ ++ R L+Y + +E Sbjct: 202 TTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAY 261 Query: 196 -GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 G KV+ ++ A + IPI+V + P T+I+ + Sbjct: 262 FGAKVLHPRTIEPAMEKGIPILVKNTFEP---------ESEGTLITND 300 |
gi|170785206|pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine- Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473 | Back alignment and structure |
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%) Query: 138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-- 195 T +D +AAL + AD+I T V GVY+ DPR+ ++ R L+Y + +E Sbjct: 203 TTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAY 262 Query: 196 -GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 G KV+ ++ A + IPI+V + P T+I+ + Sbjct: 263 FGAKVLHPRTIEPAMEKGIPILVKNTFEP---------ESEGTLITND 301 |
gi|9955156|pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate Synthetase From The Hyperthermophilic Archaeon Pyrococcus Furiosus Bound To Adp Length = 314 | Back alignment and structure |
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRI---CADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 KRV++ + G AL G + ++ + IAE+ A+G E+ I G G + Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 64 VAE------NYLLCERSTVDSMGMLST-VINALALDLALRKINVPTVILSSIFMPQ 112 + +M + AL LRK + +++ I Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTI 118 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | ||
3ek6_A | 243 | Uridylate kinase; UMPK unique GTP binding site, alloste | 1e-42 | |
3nwy_A | 281 | Uridylate kinase; allosterically activated form, AAK fo | 5e-42 | |
2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, pyri | 1e-36 | |
1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genomics, | 1e-35 | |
2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, prote | 2e-35 | |
1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, struc | 7e-35 | |
2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine biosynt | 1e-32 | |
2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophosphate | 4e-27 | |
2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alpha/be | 5e-24 | |
2ij9_A | 219 | Uridylate kinase; structural genomics, protein structur | 1e-23 | |
2ogx_B | 270 | Molybdenum storage protein subunit beta; open alpha/bet | 1e-23 | |
2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, phosph | 7e-23 | |
3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate mevalo | 1e-22 | |
3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinase, AT | 6e-18 | |
3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthesis i | 1e-14 | |
2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-protein co | 4e-04 | |
3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, kinase | 3e-11 | |
2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, protein s | 6e-08 | |
1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetase; tr | 7e-08 | |
2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma glutamy | 0.002 | |
3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibition, | 4e-07 | |
3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase transfera | 4e-06 |
>3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric regulation, ATP-binding, cytoplasm kinase, nucleotide-binding; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
---|
Score = 168 bits (425), Expect = 1e-42 Identities = 111/242 (45%), Positives = 159/242 (65%), Gaps = 3/242 (1%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 MS+ Y+R+LLK+SGEAL G +G+D +NR+ ++ E G ++ +V+GGGNIFRG Sbjct: 4 MSELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 + + A D MGML+TVINALA+ AL K+ ++S+I + VCE F R Sbjct: 64 AGLAASGMDRVTG---DHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRR 120 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 A+ +L +G++ IF+ GTGN F TTDS AALRA EIGAD++LK T+VDGVY DP+ H+ Sbjct: 121 RAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSD 180 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + R+DSLTY++ I +GL+VMD A+ LARD +P+ +F + PG + L G T++ Sbjct: 181 AVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQ 240 Query: 241 GE 242 G Sbjct: 241 GR 242 |
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
---|
Score = 166 bits (420), Expect = 5e-42 Identities = 93/235 (39%), Positives = 142/235 (60%), Gaps = 4/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 Y RVLLK+ GE G G+D D V ++ IA+V G++I +V+GGGN FRG+Q+ Sbjct: 50 YSRVLLKLGGEMFGG-GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ 108 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 ER+ D MGML TV+N+LAL L K + T + ++I M QV E + AV + Sbjct: 109 LG---MERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRH 165 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 L +G+VVIF G G + +TD+ AA RA EIGADV+L VDGV++ DPRV+ + Sbjct: 166 LEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLT 225 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 ++++ + +++GL+V D + L D +PI+VF++ + G I + G T+++ Sbjct: 226 AVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 |
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 | Back alignment and structure |
---|
Score = 148 bits (374), Expect = 1e-36 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 3/239 (1%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 PYKRVL+K+SG ALA +G + + I +I + GIE+ IV+GGGNIFRG Sbjct: 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE 70 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124 + + + + + + + K N +++SI V E + AV Sbjct: 71 EWGI--DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVH 128 Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT-QVDGVYSADPRVHASSTR 183 +L G +VIF GG G F+TTD + RA E+ +D IL VDGV+++DP+ + S+ Sbjct: 129 HLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKM 188 Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 + L YN + + ++VMD A+++LARD ++P VF+ PG + G T+I+ + Sbjct: 189 YRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 |
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 | Back alignment and structure |
---|
Score = 145 bits (365), Expect = 1e-35 Identities = 89/244 (36%), Positives = 145/244 (59%), Gaps = 5/244 (2%) Query: 1 MSDFP-YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59 MS P Y+R+L+K+SGEALAG G G+DI +V I +IAEV+ G++I +V+GGGN++R Sbjct: 1 MSLEPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWR 60 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 G +R D GML TV+NAL + +L+ V T + ++I M V E + Sbjct: 61 GEPAADAG---MDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIR 117 Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLTTDSA-AALRASEIGADVILKGTQVDGVYSADPRVH 178 A+ +L + ++V+F G G+ + +TD+ A A +++ VDGVY+ADP+ Sbjct: 118 GRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKD 177 Query: 179 ASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 A++ +FD LT+ + I++GLK+MD + L+ D I ++VF+++ G I + G T Sbjct: 178 ANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTT 237 Query: 239 ISGE 242 +S + Sbjct: 238 VSNK 241 |
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
---|
Score = 144 bits (364), Expect = 2e-35 Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 3/240 (1%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 +S YKR+LLK+SGEAL G G G+D ++R+ +I E+ G+E+ +V+GGGN+FRG Sbjct: 3 LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRG 62 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 +++ R D MGML+TV+N LA+ +L + +V ++S+ + +C+ ++ Sbjct: 63 AKLAKAG---MNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 A+ L + +VVIFS GTGN F TTDS A LR EI ADV+LK T+VDGVY DP + Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPD 179 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + + +L+Y + I+K LKVMD ++ LARD +PI VF++ PG + ++G T I Sbjct: 180 AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239 |
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 | Back alignment and structure |
---|
Score = 142 bits (358), Expect = 7e-35 Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 3/234 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLK+SGE+L G FG++ D++ + +IAEV G+++GIVVGGGNIFRG A Sbjct: 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 + +R+T D MGM++TV+NALAL A + + + S++ M Q+ E ++ A+ Y Sbjct: 67 GS---MDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 L +GKVVIF+ GTGN F TTD+AAALR +E+ DV+LK T VDGVY+ADP+ S+TR++ Sbjct: 124 LEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYE 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 ++T+++ + K LKVMD + L R+ + I+VF I G + ++G T++ Sbjct: 184 TITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237 |
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
---|
Score = 135 bits (339), Expect = 1e-32 Identities = 85/236 (36%), Positives = 141/236 (59%), Gaps = 5/236 (2%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 +R+++K+SG L +D +N + I ++ K I IV+GGGNI+RGS Sbjct: 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVS-IVLGGGNIWRGSI--- 79 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 L +R+ D+MGM++T+IN LAL+ AL +NV T++LS+I ++ S N Sbjct: 80 AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKA 139 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184 + + +V+IF GTG + TTDS AA+RA+E + +IL G VDGVY +DP+++ ++ + Sbjct: 140 IEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFY 199 Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + +T+N + + LKVMD ++ L ++ +I ++VF+I P I L + TI+S Sbjct: 200 EHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 |
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
---|
Score = 116 bits (291), Expect = 4e-27 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 30/242 (12%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 ++LK+SG+ ++D++ + I E+ G +GIV GGG+ R +A Sbjct: 2 NIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLARE 56 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E +D +G+ ++ +NA + + S + + S + S Sbjct: 57 IGIGEA-YLDLLGIWASRLNAYLV------------MFSLQDLAYMHVPQSLEEFIQDWS 103 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 GKVV+ +T + AAL A + ++ T VDGVY DPR++A L Sbjct: 104 HGKVVVTG--GFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHL 161 Query: 188 TYNQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRST 237 T + +++D ++ + I +IV + I L G S+ Sbjct: 162 TTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 Query: 238 II 239 II Sbjct: 222 II 223 |
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
---|
Score = 106 bits (265), Expect = 5e-24 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 33/247 (13%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 ++K+ G + D++ + ++ ++ + + I+ G G R V + Sbjct: 41 LQVVKIGGRVMDR------GADAILPLVEELRKLLPEH-RLLILTGAGVRARHVFSVGLD 93 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 L ++ + N L L + V +LS Sbjct: 94 LGL-PVGSLAPLAASEAGQNGHILAAMLASEG----------VSYVEHPTVADQLAIHLS 142 Query: 128 QGKVVIFSG----------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177 + V+ S G+ D+ A L A GA + VDG+Y+ADP Sbjct: 143 ATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNG 202 Query: 178 --HASSTRFDSLTYNQFIE-KGLKVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSG 232 + + + +G +D V+ + V + PG + L G Sbjct: 203 PDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRG 262 Query: 233 IGRSTII 239 T+I Sbjct: 263 EHVGTLI 269 |
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
---|
Score = 105 bits (262), Expect = 1e-23 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 33/242 (13%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 +V+L + G L+ + + + I V + ++ +VVGGG + R A Sbjct: 2 KVVLSLGGSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + D +G+ +T +NA+ L A+ A Sbjct: 55 LGA-SETFCDYIGIAATRLNAMLLISAIP-------------SAAKKVPVDFMEAEELSK 100 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 +VV+ G TTD+ AAL A I ADV + T VDGVYSADP+ S+ ++D L Sbjct: 101 LYRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRL 158 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + Q +E + V+D + + I V +P I + G T+ Sbjct: 159 SPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTV 217 Query: 239 IS 240 I+ Sbjct: 218 IA 219 |
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
---|
Score = 105 bits (262), Expect = 1e-23 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 12/236 (5%) Query: 11 LKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLL 70 +K+ G+++ +V + +I + I G G R +A L Sbjct: 41 IKIGGQSVIDRGR-----AAVYPLVDEIVAARKNHKLL-IGTGAGTRARHLYSIAAGLGL 94 Query: 71 CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGK 130 + +G NA L L K +P V + + + S + K Sbjct: 95 -PAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYK 153 Query: 131 VVIFSGGTGN-AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY 189 + + G TD+ L A + G ++ DG+Y+A+P+ +T ++ Sbjct: 154 LWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISV 213 Query: 190 NQFIEKGL--KVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 ++ KGL +++ ++ + + V + PG + L+G TII+ Sbjct: 214 DEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 |
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
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Score = 102 bits (254), Expect = 7e-23 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 28/248 (11%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 + + R++ + G L + DID + I + +V ++ E+ +VVGGG + R Sbjct: 14 VPRGSHMRIVFDIGGSVLVPENP---DIDFIKEIAYQLTKV-SEDHEVAVVVGGGKLARK 69 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 VAE + D +G+ T NA+ L ALR+ P V E F Sbjct: 70 YIEVAE-KFNSSETFKDFIGIQITRANAMLLIAALRE----------KAYPVVVEDFWEA 118 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 L I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ + Sbjct: 119 WKAVQL----KKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPT 174 Query: 181 STRFDSLTYNQFIE---------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLS 231 + + + + +E V+D + + I IV ++ + Sbjct: 175 AKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIK 234 Query: 232 GIGRSTII 239 G T I Sbjct: 235 GDHNGTTI 242 |
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
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Score = 102 bits (254), Expect = 1e-22 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 22/252 (8%) Query: 5 PYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 P+ ++LK+ G + S ++ I ++ ++ VV GG F + Sbjct: 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLS----GIEDLVCVVHGGGSFGHIKA 57 Query: 64 VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPT---VILSSIFMPQVCEVFSCR 120 + L ++ S+G + LDL + + I I + F Sbjct: 58 MEFG-LPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYT 116 Query: 121 NAVSYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 + Y+ G V + G + D A A + DV + T VDG+YS D Sbjct: 117 PLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKD 176 Query: 175 PRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIW 227 P+ + + + N ++ G+ + V + + + + + P I Sbjct: 177 PKRNPDAVLLRDIDTNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIG 236 Query: 228 GGLSGIGRSTII 239 T+I Sbjct: 237 DIGKESFIGTVI 248 |
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 | Back alignment and structure |
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Score = 86.0 bits (212), Expect = 6e-18 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 25/260 (9%) Query: 7 KRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVY------AKGIEIGIVVGGGNIFR 59 +LK+ G L+ + + + D++ RI +I K I++ +V GGG Sbjct: 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGH 66 Query: 60 G-SQVVAENYLLCERSTVDSMGMLSTVINALALDL----ALRKINVPTVILSSIFMPQVC 114 ++ + + G + L+ ++P V + Sbjct: 67 PVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFG 126 Query: 115 EVFSCRNAV--SYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQ 166 + + L + V + G G ++ D A+E+ AD+IL T Sbjct: 127 DKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATD 186 Query: 167 VDGVYSADPRV-HASSTRFDSLTYNQFIEKGLKV---MDCASVVLARDCSIPIIVFSIHS 222 VDGV + + + + V M + + R VF+ + Sbjct: 187 VDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYK-IEMIRKNKCRGFVFNGNK 245 Query: 223 PGGIWGGLSGIGRSTIISGE 242 I+ L G T I Sbjct: 246 ANNIYKALLGEVEGTEIDFS 265 |
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 | Back alignment and structure |
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Score = 75.6 bits (185), Expect = 1e-14 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 34/269 (12%) Query: 6 YKRVLLKVSGEALAGISG--FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI------ 57 ++LK+ G + +D D++ RI ++I + I V G G+ Sbjct: 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMI--VHGAGSFGHPFAG 59 Query: 58 -FRGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTV--ILSSIFMPQVC 114 +R + L R ++ + AL +P V S+ Sbjct: 60 EYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAG 119 Query: 115 EVFSCRNAV--SYLSQGKVVIFSG--------GTGNAFLTTDSAAALRASEIGADVILKG 164 + ++ SYL +G V + G + ++ D + + + ++ G Sbjct: 120 RISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILG 179 Query: 165 TQVDGVYSADPRVHASSTRFDSLTYN--QFIEKGLKVMDC--------ASVVLARDCSIP 214 T VDGVY+ +P+ H + D + G D ++L + + Sbjct: 180 TDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVE 239 Query: 215 IIVFSIHSPGGIWGGLSG-IGRSTIISGE 242 + + PG I L G R T I+G+ Sbjct: 240 SEIINAAVPGNIERALLGEEVRGTRITGK 268 |
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 | Back alignment and structure |
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Score = 40.2 bits (93), Expect = 4e-04 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 49/273 (17%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG-------NIFR 59 K +++K G A+ + + + +D+ + G+ +V GGG Sbjct: 37 KTIVVKYGGAAMT-------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN 89 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 + + + +T++ + M+ L + V LS + Sbjct: 90 IPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVP 149 Query: 120 RN----------------AVSYLSQGKVVIFSGGTGNA-----FLTTDSAAALRASEIGA 158 + + G + + + + + D+ A A+ +GA Sbjct: 150 NSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGA 209 Query: 159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-------LKVMDCASVVLARDC 211 + ++ T V G+ + D + IE G KV C + Sbjct: 210 EKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVK 269 Query: 212 SIPIIVFSIHSPGGIWGGL---SGIGRSTIISG 241 + II + + G G T+I+G Sbjct: 270 TASII--DGRRQHSLLHEIMSDEGAG--TMITG 298 |
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* Length = 286 | Back alignment and structure |
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Score = 64.1 bits (155), Expect = 3e-11 Identities = 24/205 (11%), Positives = 58/205 (28%), Gaps = 10/205 (4%) Query: 1 MSDFPYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59 S + +KV G + +D D+V R + A + +++ GG F Sbjct: 18 GSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFG 77 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 + + + V A L ++ + L+++ + Sbjct: 78 HGAIRDHDSTHAFSLAGLTEATFE-VKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLR 136 Query: 120 RNAVSYLSQGKVVIFSGG-------TGNAFLTTDSAAALRASEIGADV-ILKGTQVDGVY 171 + + + G ++D + + + ++ T VDG+ Sbjct: 137 SEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIV 196 Query: 172 SADPRVHASSTRFDSLTYNQFIEKG 196 + D+ + Q Sbjct: 197 TDGAGGDTILPEVDARSPEQAYAAL 221 |
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 | Back alignment and structure |
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Score = 53.1 bits (126), Expect = 6e-08 Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 8/184 (4%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KR+++KV ++ + + + + A +A+ + E+ +V +++ + Sbjct: 2 KRIVVKVGSHVISEENTL--SFERLKNLVAFLAK-LMEKYEVILVTSAAISAGHTKLDID 58 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 L + + ++G + L K+ ++ F + + + Sbjct: 59 RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMI 118 Query: 127 SQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 + G + I + F DS +A AD+++ + +DG Y +P + + Sbjct: 119 NLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDA 178 Query: 182 TRFD 185 R + Sbjct: 179 KRLE 182 |
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 | Back alignment and structure |
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Score = 52.9 bits (126), Expect = 7e-08 Identities = 41/248 (16%), Positives = 63/248 (25%), Gaps = 74/248 (29%) Query: 7 KRVLLKVSGEALAGISGFG---VDIDSVNRICADIAEVYAKGIEIGIVV----------- 52 KRV++ + G AL G +D+V + IAE+ A+G E+ I Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 53 --GGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL-------------------AL 91 G G + + + N L Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 92 DLALRKINVPTVILSS--------------------------IFMPQVCEVFSCRNAVSY 125 D A + P + P Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172 + +G +VI SGG G A + D A A E+ AD+ + T V+G Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 173 ADPRVHAS 180 Sbjct: 243 YYGTEKEQ 250 |
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* Length = 367 | Back alignment and structure |
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Score = 38.1 bits (88), Expect = 0.002 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 10/187 (5%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 + +++K+ L G S ++ + + A+++A G I ++V G I G + + Sbjct: 5 QTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRI-VIVTSGAIAAGREHLGY 62 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 L ++ + + + + + + Sbjct: 63 PELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLR 122 Query: 127 SQGKVVIFSGGTGNAFLTTD--------SAAALRASEIGADVILKGTQVDGVYSADPRVH 178 + + N + T + +AL A GAD +L T G+Y+ADPR + Sbjct: 123 ALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSN 182 Query: 179 ASSTRFD 185 + Sbjct: 183 PQAELIK 189 |
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 | Back alignment and structure |
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Score = 50.3 bits (120), Expect = 4e-07 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 13/114 (11%) Query: 125 YLSQGKVVIFSGGTG----NAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174 L +GK+ I +G G +TT D+ A A+ + ADV + VDGVY+AD Sbjct: 124 ALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 PR+ ++ + + L++ + +E G K++ SV AR ++P+ V S +S Sbjct: 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDP 237 |
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
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Score = 46.8 bits (111), Expect = 4e-06 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%) Query: 124 SYLSQGKVVIFSGGTGNA-----FLTT------DSAAALRASEIGADVILKGTQVDGVYS 172 +L +GKVV+ +G G + +TT D++A A+ + AD T V G+ + Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILT 182 Query: 173 ADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 DPR+ + +T ++ +E G KV+ +V +AR+ IP++V S S Sbjct: 183 TDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD 236 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 242 | uridylate kinase [Candidatus Liberibacter asiaticus str | ||
3ek6_A | 243 | Uridylate kinase; UMPK unique GTP binding site, alloste | 100.0 | |
3nwy_A | 281 | Uridylate kinase; allosterically activated form, AAK fo | 100.0 | |
2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, prote | 100.0 | |
1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, struc | 100.0 | |
2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, pyri | 100.0 | |
2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma glutamy | 100.0 | |
1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genomics, | 100.0 | |
2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine biosynt | 100.0 | |
2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophosphate | 100.0 | |
2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, phosph | 100.0 | |
2ij9_A | 219 | Uridylate kinase; structural genomics, protein structur | 100.0 | |
2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, protein s | 100.0 | |
2ogx_B | 270 | Molybdenum storage protein subunit beta; open alpha/bet | 100.0 | |
3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthesis i | 100.0 | |
3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibition, | 100.0 | |
3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase transfera | 100.0 | |
3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, kinase | 100.0 | |
3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate mevalo | 100.0 | |
2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alpha/be | 100.0 | |
2j0w_A |