254780778
elongation factor Ts
GeneID in NCBI database: | 8209784 | Locus tag: | CLIBASIA_03345 |
Protein GI in NCBI database: | 254780778 | Protein Accession: | YP_003065191.1 |
Gene range: | +(484385, 485275) | Protein Length: | 296aa |
Gene description: | elongation factor Ts | ||
COG prediction: | [J] Translation elongation factor Ts | ||
KEGG prediction: | tsf; elongation factor Ts; K02357 elongation factor EF-Ts | ||
SEED prediction: | Translation elongation factor Ts | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Translation elongation factors bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | |||
170785425 | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | 1 | 1e-166 | |
315121995 | 299 | elongation factor Ts [Candidatus Liberibacter solanacea | 1 | 1e-122 | |
15965249 | 307 | elongation factor Ts [Sinorhizobium meliloti 1021] Leng | 1 | 2e-70 | |
150396351 | 307 | elongation factor Ts [Sinorhizobium medicae WSM419] Len | 1 | 2e-70 | |
227821898 | 307 | elongation factor Ts [Sinorhizobium fredii NGR234] Leng | 1 | 4e-68 | |
116251978 | 308 | elongation factor Ts [Rhizobium leguminosarum bv. vicia | 1 | 2e-67 | |
325292738 | 308 | Elongation factor Ts [Agrobacterium sp. H13-3] Length = | 1 | 3e-67 | |
222148861 | 308 | elongation factor Ts [Agrobacterium vitis S4] Length = | 1 | 4e-67 | |
159184737 | 308 | elongation factor Ts [Agrobacterium tumefaciens str. C5 | 1 | 5e-67 | |
241204505 | 308 | elongation factor Ts [Rhizobium leguminosarum bv. trifo | 1 | 5e-67 |
>gi|170785425|gb|ACB37706.1| elongation factor Ts [Candidatus Liberibacter asiaticus] Length = 296 | Back alignment and organism information |
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Score = 587 bits (1513), Expect = e-166, Method: Compositional matrix adjust. Identities = 295/296 (99%), Positives = 296/296 (100%) Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 MSKVSAVAVKELRGKTGAGI+DCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG Sbjct: 1 MSKVSAVAVKELRGKTGAGILDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG Sbjct: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120 Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED Sbjct: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180 Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG Sbjct: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKENDDG 296 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKENDDG Sbjct: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKENDDG 296 |
Species: Candidatus Liberibacter asiaticus Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|315121995|ref|YP_004062484.1| elongation factor Ts [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 299 | Back alignment and organism information |
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>gi|15965249|ref|NP_385602.1| elongation factor Ts [Sinorhizobium meliloti 1021] Length = 307 | Back alignment and organism information |
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>gi|150396351|ref|YP_001326818.1| elongation factor Ts [Sinorhizobium medicae WSM419] Length = 307 | Back alignment and organism information |
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>gi|227821898|ref|YP_002825868.1| elongation factor Ts [Sinorhizobium fredii NGR234] Length = 307 | Back alignment and organism information |
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>gi|116251978|ref|YP_767816.1| elongation factor Ts [Rhizobium leguminosarum bv. viciae 3841] Length = 308 | Back alignment and organism information |
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>gi|325292738|ref|YP_004278602.1| Elongation factor Ts [Agrobacterium sp. H13-3] Length = 308 | Back alignment and organism information |
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>gi|222148861|ref|YP_002549818.1| elongation factor Ts [Agrobacterium vitis S4] Length = 308 | Back alignment and organism information |
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>gi|159184737|ref|NP_354382.2| elongation factor Ts [Agrobacterium tumefaciens str. C58] Length = 308 | Back alignment and organism information |
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>gi|241204505|ref|YP_002975601.1| elongation factor Ts [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 308 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
PRK09377 | 290 | PRK09377, tsf, elongation factor Ts; Provisional | 1e-74 | |
TIGR00116 | 290 | TIGR00116, tsf, translation elongation factor Ts | 7e-44 | |
KOG1071 | 340 | KOG1071, KOG1071, KOG1071, Mitochondrial translation el | 1e-28 | |
COG0264 | 296 | COG0264, Tsf, Translation elongation factor Ts [Transla | 5e-61 | |
pfam00889 | 177 | pfam00889, EF_TS, Elongation factor TS | 3e-30 | |
PRK12332 | 198 | PRK12332, tsf, elongation factor Ts; Reviewed | 6e-27 | |
CHL00098 | 200 | CHL00098, tsf, elongation factor Ts | 3e-21 | |
PRK12332 | 198 | PRK12332, tsf, elongation factor Ts; Reviewed | 2e-21 | |
CHL00098 | 200 | CHL00098, tsf, elongation factor Ts | 2e-10 |
>gnl|CDD|181810 PRK09377, tsf, elongation factor Ts; Provisional | Back alignment and domain information |
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>gnl|CDD|129222 TIGR00116, tsf, translation elongation factor Ts | Back alignment and domain information |
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>gnl|CDD|36289 KOG1071, KOG1071, KOG1071, Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|30613 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|144474 pfam00889, EF_TS, Elongation factor TS | Back alignment and domain information |
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>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed | Back alignment and domain information |
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>gnl|CDD|177028 CHL00098, tsf, elongation factor Ts | Back alignment and domain information |
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>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed | Back alignment and domain information |
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>gnl|CDD|177028 CHL00098, tsf, elongation factor Ts | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
PRK09377 | 288 | tsf elongation factor Ts; Provisional | 100.0 | |
COG0264 | 296 | Tsf Translation elongation factor Ts [Translation, ribo | 100.0 | |
TIGR00116 | 364 | tsf translation elongation factor Ts; InterPro: IPR0018 | 100.0 | |
PRK12332 | 216 | tsf elongation factor Ts; Reviewed | 100.0 | |
CHL00098 | 207 | tsf elongation factor Ts | 100.0 | |
KOG1071 | 340 | consensus | 100.0 | |
pfam00889 | 177 | EF_TS Elongation factor TS. | 100.0 | |
LOAD_efts_N | 41 | consensus | 99.49 | |
pfam00627 | 37 | UBA UBA/TS-N domain. This small domain is composed of t | 97.66 | |
COG1308 | 122 | EGD2 Transcription factor homologous to NACalpha-BTF3 [ | 95.96 | |
TIGR00264 | 125 | TIGR00264 alpha-NAC homolog; InterPro: IPR005231 Eukary | 95.76 | |
cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is a co | 95.39 | |
smart00165 | 37 | UBA Ubiquitin associated domain. Present in Rad23, SNF1 | 95.15 | |
PRK06369 | 116 | nac nascent polypeptide-associated complex protein; Rev | 94.45 | |
KOG1071 | 340 | consensus | 98.5 | |
COG0264 | 296 | Tsf Translation elongation factor Ts [Translation, ribo | 96.99 | |
PRK09377 | 288 | tsf elongation factor Ts; Provisional | 96.72 | |
pfam00889 | 177 | EF_TS Elongation factor TS. | 97.24 |
>PRK09377 tsf elongation factor Ts; Provisional | Back alignment and domain information |
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>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00116 tsf translation elongation factor Ts; InterPro: IPR001816 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , | Back alignment and domain information |
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>PRK12332 tsf elongation factor Ts; Reviewed | Back alignment and domain information |
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>CHL00098 tsf elongation factor Ts | Back alignment and domain information |
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>KOG1071 consensus | Back alignment and domain information |
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>pfam00889 EF_TS Elongation factor TS | Back alignment and domain information |
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>LOAD_efts_N consensus | Back alignment and domain information |
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>pfam00627 UBA UBA/TS-N domain | Back alignment and domain information |
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>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] | Back alignment and domain information |
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>TIGR00264 TIGR00264 alpha-NAC homolog; InterPro: IPR005231 Eukaryotic NAC, an abundant heterodimer composed of two homologous subunits, reversibly binds eukaryotic ribosomes and is located in direct proximity to nascent polypeptides as they emerge from the ribosome | Back alignment and domain information |
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>cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
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>smart00165 UBA Ubiquitin associated domain | Back alignment and domain information |
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>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed | Back alignment and domain information |
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>KOG1071 consensus | Back alignment and domain information |
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>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK09377 tsf elongation factor Ts; Provisional | Back alignment and domain information |
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>pfam00889 EF_TS Elongation factor TS | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 1e-64 | |
3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 1e-59 | |
1efu_B | 282 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 5e-52 | |
1xb2_B | 291 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 2e-28 | |
1tfe_A | 145 | Dimerization Domain Of Ef-Ts From T. Thermophilus L | 6e-23 | |
1aip_C | 196 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 6e-22 | |
1aip_C | 196 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 5e-22 | |
2cp9_A | 64 | Solution Structure Of Rsgi Ruh-042, A Uba Domain Fr | 6e-06 |
>gi|305677666|pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 153/294 (52%), Gaps = 28/294 (9%) Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 M++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120 +I DG I+EVN +TD +AK+ FQ+ + A++ + VL F+ Sbjct: 61 VIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEER 119 Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180 + +A GE I +RR A + V+ SY H IGVLVA + + E Sbjct: 120 V-------ALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAAKGADE- 163 Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 + + IA+HV + P I + + +V + + A+ SGK I EK+V G Sbjct: 164 -----ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294 +M+ F E L Q FV++PSKTV LKE + EV G F VG+ + Sbjct: 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 266 |
>gi|297787753|pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
>gi|1942722|pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282 | Back alignment and structure |
>gi|56967055|pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291 | Back alignment and structure |
>gi|157833929|pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 | Back alignment and structure |
gi|2624673|pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 | Back alignment and structure |
gi|2624673|pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 | Back alignment and structure |
>gi|159163835|pdb|2CP9|A Chain A, Solution Structure Of Rsgi Ruh-042, A Uba Domain From Human Mitochondrial Elongation Factor Ts Length = 64 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
3agp_A | 1289 | Elongation factor TS, elongation factor TU, linke repli | 5e-77 | |
3mmp_A | 678 | Elongation factor TU 2, elongation factor TS; RDRP,HOST | 3e-69 | |
1efu_B | 282 | Elongation factor TS; complex (TWO elongation factors); | 2e-58 | |
1xb2_B | 291 | EF-TS, elongation factor TS, mitochondrial, EF-TSMT; pr | 2e-35 | |
1tfe_A | 145 | Elongation factor TS; 1.70A {Thermus thermophilus} SCOP | 2e-20 | |
1aip_C | 196 | EF-TS, elongation factor TS; nucleotide exchange, GTP-b | 3e-16 | |
1aip_C | 196 | EF-TS, elongation factor TS; nucleotide exchange, GTP-b | 1e-16 | |
2cp9_A | 64 | EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UB | 2e-15 |
>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A Length = 1289 | Back alignment and structure |
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Score = 282 bits (724), Expect = 5e-77 Identities = 105/299 (35%), Positives = 152/299 (50%), Gaps = 32/299 (10%) Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 M++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120 +I DG I+EVN +TD +AK+ FQ+ + A++ + VL Sbjct: 61 VIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA------ 113 Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180 + +A GE I +RR A + V+ SY H IGVLVA + + E+ Sbjct: 114 -QFEEERVALVAKIGENINIRRVAA--LEGDVLGSYQHG------ARIGVLVAAKGADEE 164 Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 + + IA+HV + P I + + +V + + A+ SGK I EK+V G Sbjct: 165 ------LVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295 +M+ F E L Q FV++PSKTV LKE + EV G F VG K D Sbjct: 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVGEGIEKVETD 271 |
>3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli} Length = 678 | Back alignment and structure |
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>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 282 | Back alignment and structure |
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>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291 | Back alignment and structure |
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>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 | Back alignment and structure |
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>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 | Back alignment and structure |
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>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 | Back alignment and structure |
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>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
3agp_A | 1289 | Elongation factor TS, elongation factor TU, linke repli | 100.0 | |
3mmp_A | 678 | Elongation factor TU 2, elongation factor TS; RDRP,HOST | 100.0 | |
1efu_B | 282 | Elongation factor TS; complex (TWO elongation factors); | 100.0 | |
1xb2_B | 291 | EF-TS, elongation factor TS, mitochondrial, EF-TSMT; pr | 100.0 | |
1aip_C | 196 | EF-TS, elongation factor TS; nucleotide exchange, GTP-b | 100.0 | |
1tfe_A | 145 | Elongation factor TS; 1.70A {Thermus thermophilus} SCOP | 100.0 | |
1xb2_B | 291 | EF-TS, elongation factor TS, mitochondrial, EF-TSMT; pr | 97.31 | |
2cp9_A | 64 | EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UB | 99.78 | |
1vg5_A | 73 | RSGI RUH-014, rhomboid family protein; UBA domain, cDNA | 96.56 | |
1wiv_A | 73 | UBP14, ubiquitin-specific protease 14; ubiquitin associ | 96.19 | |
1ify_A | 49 | HHR23A, UV excision repair protein RAD23 homolog A; ubi | 96.05 | |
1wr1_B | 58 | Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin | 95.89 | |
1wj7_A | 104 | Hypothetical protein (RSGI RUH-015); UBA domain, ubiqui | 95.86 | |
2dai_A | 83 | Ubadc1, ubiquitin associated domain containing 1; UBA d | 95.63 | |
1wji_A | 63 | Tudor domain containing protein 3; UBA domain, structur | 95.41 | |
2dak_A | 63 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T | 95.15 | |
1tr8_A | 102 | Conserved protein (MTH177); chaperones, nascent polypep | 94.87 | |
1vej_A | 74 | Riken cDNA 4931431F19; UBA domain, three helix bundle, | 94.81 | |
1wgn_A | 63 | UBAP1, ubiquitin associated protein; ubiquitin associat | 94.8 | |
2dna_A | 67 | Unnamed protein product; ubiquitin associated domain, D | 94.77 | |
2knz_A | 53 | Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, | 94.57 | |
2dag_A | 74 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T | 93.7 | |
2dah_A | 54 | Ubiquilin-3; UBA domain, structural genomics, NPPSFA, n | 93.6 | |
2jy5_A | 52 | Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucl | 93.34 | |
2bwb_A | 46 | Ubiquitin-like protein DSK2; UBA, signaling protein; 2. | 93.19 | |
2cwb_A | 108 | Chimera of immunoglobulin G binding protein G and ubiqu | 93.13 | |
1whc_A | 64 | RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, str | 92.94 | |
2cpw_A | 64 | CBL-interacting protein STS-1 variant; ubiquitin associ | 92.82 | |
2g3q_A | 43 | Protein YBL047C; endocytosis, solution structure, UBA d | 92.79 | |
1vek_A | 84 | UBP14, ubiquitin-specific protease 14, putative; UBA do | 90.75 | |
1vdl_A | 80 | Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, m | 90.62 | |
1tfe_A | 145 | Elongation factor TS; 1.70A {Thermus thermophilus} SCOP | 98.85 | |
3agp_A | 1289 | Elongation factor TS, elongation factor TU, linke repli | 92.43 | |
1efu_B | 282 | Elongation factor TS; complex (TWO elongation factors); | 92.15 |
>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A | Back alignment and structure |
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Probab=100.00 E-value=0 Score=681.71 Aligned_cols=263 Identities=40% Similarity=0.590 Sum_probs=247.0 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE Q ss_conf 97355899999998719998999999996299989999999982388998651033642200004407885369999840 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE 80 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE 80 (296) ||+|||++||+||++||||||||||||+|++||+|+|++|||+||+++|+||++|.|+||+|+++.++ +.|+|+||||| T Consensus 1 Ma~ITA~~VKeLRe~TGAGMMDCKkAL~E~~GD~ekAie~LRkkG~a~AaKKa~R~aaEGli~~~~~~-~~~~lvEvN~E 79 (1289) T 3agp_A 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ 79 (1289) T ss_dssp -CCSCHHHHHHHHHHHCCCSHHHHHHHHTTTSCHHHHHHHHHHTTHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC T ss_conf 98548999999998749948899999877588899999999986358777646610027549999739-87999999767 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 31010226799999988875310335657786400410000146778999985434310244431022221000001353 Q gi|254780778|r 81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS 160 (296) Q Consensus 81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~ 160 (296) |||||||+.|++|++++++.++.++.+..+.+. .|++|.+.+++++|||||+|||+.++ +++++++|+|+ T Consensus 80 TDFVAkne~F~~l~~~i~~~~~~~~~~~~e~l~-------~~~~e~~~~~ia~iGEni~lrR~~~~--~~~~v~~Y~H~- 149 (1289) T 3agp_A 80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK-------AQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG- 149 (1289) T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHTTCCSHHHHH-------HHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC- T ss_conf 664227827999999999999855988899987-------07999999998760687799889997--28879999729- Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 23460344344430354321578999885655667654332045878362777766566677631257867899777401 Q gi|254780778|r 161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 (296) Q Consensus 161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G 240 (296) |||||||++++.++ +++|+||||||||+|.||++++||++++++|++|+++|++++|||++|++|||+| T Consensus 150 -----~kIgvlV~~~~~~~------e~akdiAMhIAA~~P~~ls~~~vp~~vve~Er~i~~~qa~~~GKPe~I~eKIveG 218 (1289) T 3agp_A 150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 (1289) T ss_dssp -----TTEEEEEEETTCCH------HHHHHHHHHHHTTCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred -----CEEEEEEEECCCCH------HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf -----97999999568759------9998899999853873188156999999999999999998739979999999878 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 676664233302560002777439999987764207982899889876224 Q gi|254780778|r 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) ||+|||+|+|||+|+||+||++||++||++. +.+|++|+||+||| T Consensus 219 rl~kf~~E~~Ll~Q~fVkD~~~tV~~~l~~~------~~~v~~F~R~evGE 263 (1289) T 3agp_A 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGE 263 (1289) T ss_dssp HHHHHHHHTBGGGSBCTTSTTSBHHHHHHHT------TCCCCEEEEEETTT T ss_pred HHHHHHHHHEECCCCEEECCCCCHHHHHHHC------CCEEEEEEEEEECC T ss_conf 8887745632136850327963199999867------99799999997448 |
>3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli} | Back alignment and structure |
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>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
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>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
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>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 | Back alignment and structure |
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>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 | Back alignment and structure |
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>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
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>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 | Back alignment and structure |
---|
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
---|
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
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>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
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>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
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>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
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>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
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>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis} | Back alignment and structure |
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>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
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>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
---|
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
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>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} | Back alignment and structure |
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>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
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>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B | Back alignment and structure |
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>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A | Back alignment and structure |
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>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A | Back alignment and structure |
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>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
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>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
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>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
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>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
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>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
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>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 | Back alignment and structure |
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>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A | Back alignment and structure |
---|
>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
296 | elongation factor Ts [Candidatus Liberibacter asiaticus | |||
d1tfea_ | 142 | d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisatio | 2e-22 | |
d1efub2 | 143 | d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dime | 7e-16 | |
d1xb2b3 | 109 | d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dime | 5e-08 | |
d1efub3 | 54 | a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-termin | 4e-15 | |
d1aipc1 | 52 | a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-termin | 2e-14 | |
d1xb2b1 | 56 | a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-term | 3e-14 | |
d1xb2b2 | 111 | d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dime | 9e-15 | |
d1efub4 | 85 | d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimer | 2e-12 |
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274] Score = 100 bits (249), Expect = 2e-22 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISV 205 EG+I Y+H + +GVLV L + EL + + +A+H+ + +P +S Sbjct: 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSA 56 Query: 206 QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVS 265 + + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV D V Sbjct: 57 EEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVK 116 Query: 266 DFLKESEKSIGASIEVVGVSHFVVG 290 + ++++ IG +I V F +G Sbjct: 117 ELIQQAIAKIGENIVVRRFCRFELG 141 |
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
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>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109 | Back information, alignment and structure |
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>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54 | Back information, alignment and structure |
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>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52 | Back information, alignment and structure |
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>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56 | Back information, alignment and structure |
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>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111 | Back information, alignment and structure |
---|
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
d1tfea_ | 142 | Elongation factor Ts (EF-Ts), dimerisation domain {Ther | 100.0 | |
d1efub2 | 143 | Elongation factor Ts (EF-Ts), dimerisation domain {Esch | 100.0 | |
d1xb2b3 | 109 | Elongation factor Ts (EF-Ts), dimerisation domain {Cow | 99.92 | |
d1xb2b2 | 111 | Elongation factor Ts (EF-Ts), dimerisation domain {Cow | 98.34 | |
d1efub4 | 85 | Elongation factor Ts (EF-Ts), dimerisation domain {Esch | 96.61 | |
d1xb2b2 | 111 | Elongation factor Ts (EF-Ts), dimerisation domain {Cow | 99.9 | |
d1efub4 | 85 | Elongation factor Ts (EF-Ts), dimerisation domain {Esch | 99.83 | |
d1tfea_ | 142 | Elongation factor Ts (EF-Ts), dimerisation domain {Ther | 99.05 | |
d1xb2b3 | 109 | Elongation factor Ts (EF-Ts), dimerisation domain {Cow | 94.01 | |
d1efub3 | 54 | Elongation factor Ts (EF-Ts), N-terminal domain {Escher | 99.79 | |
d1xb2b1 | 56 | Elongation factor Ts (EF-Ts), N-terminal domain {Cow (B | 99.77 | |
d1aipc1 | 52 | Elongation factor Ts (EF-Ts), N-terminal domain {Thermu | 99.75 | |
d1wjia_ | 63 | Tudor domain containing protein 3, TDRD3 {Human (Homo s | 95.84 | |
d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Arabido | 95.66 | |
d1wgna_ | 63 | Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapi | 95.27 | |
d1wj7a1 | 91 | Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus | 94.95 | |
d1wiva_ | 73 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis thal | 94.89 | |
d2cpwa1 | 51 | Cbl-interacting protein p70, STS1 {Human (Homo sapiens) | 94.05 | |
d2daha1 | 41 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
d1whca_ | 64 | UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: | 93.55 | |
d1veja1 | 61 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | 93.43 | |
d2dnaa1 | 50 | Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [Ta | 93.36 | |
d2bwba1 | 44 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: | 92.91 | |
d1oqya1 | 41 | DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: | 92.83 | |
d1veka_ | 84 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis thal | 91.39 | |
d1vdla_ | 80 | Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus mu | 90.49 | |
d2crna1 | 51 | Suppressor of T-cell receptor signaling 2 (STS-2) {Huma | 90.07 | |
d1v92a_ | 46 | NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat ( | 90.05 |
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=3.8e-42 Score=298.31 Aligned_cols=138 Identities=30% Similarity=0.589 Sum_probs=131.7 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH Q ss_conf 2210000013532346034434443035432---1578999885655667654332045878362777766566677631 Q gi|254780778|r 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL 225 (296) Q Consensus 149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~ 225 (296) .+|.+++|+|++ ||+||||.+++.++ ..+.+.+++++|||||+|++|.||++++||++++++|+++++++++ T Consensus 2 ~eG~v~~YiH~~-----gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~ 76 (142) T d1tfea_ 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL 76 (142) T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCC-----CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH T ss_conf 987899998389-----967999999735612320157899999998655403865388567879999999999877754 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) .+|||++|++||++|||+|||+|+|||+|+||+||++||++||++.++++|.+|+|++|+||+||- T Consensus 77 ~~gKP~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~vG~ 142 (142) T d1tfea_ 77 NEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 142 (142) T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECC T ss_conf 045378899999999999888876320587405998409999999898608980899999998369 |
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
---|
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
---|
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
---|
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
---|
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asia | ||
1efu_B_1-265 | 265 | (B:1-265) Elongation factor TS; complex (TWO elong | 9e-55 | |
1aip_C_1-104_164-196 | 137 | (C:1-104,C:164-196) EF-TS, elongation factor TS; n | 3e-29 | |
1xb2_B_46-291 | 246 | (B:46-291) EF-TS, elongation factor TS, mitochondr | 2e-22 | |
2cp9_A_ | 64 | (A:) EF-TS, EF-TSMT, elongation factor TS, mitocho | 5e-17 | |
1xb2_B_1-45 | 45 | (B:1-45) EF-TS, elongation factor TS, mitochondria | 2e-12 | |
1tfe_A_1-50_110-145 | 86 | (A:1-50,A:110-145) Elongation factor TS; 1.70A {Th | 3e-13 | |
1tfe_A_51-109 | 59 | (A:51-109) Elongation factor TS; 1.70A {Thermus th | 4e-10 | |
1aip_C_105-163 | 59 | (C:105-163) EF-TS, elongation factor TS; nucleotid | 4e-10 |
>1efu_B (B:1-265) Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli}Length = 265 | Back alignment and structure |
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Score = 207 bits (529), Expect = 9e-55 Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 28/289 (9%) Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61 ++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G+ Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGV 60 Query: 62 IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGI 121 I DG I+EVN +TD +AK+ FQ+ + A++ + Sbjct: 61 IKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGK-------ITDVEVLKA 112 Query: 122 TVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDK 181 + +A GE I +RR A + V+ SY H IGVLVA K Sbjct: 113 QFEEERVALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAA------K 158 Query: 182 ELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 + + IA+HV + P I + + +V + + A+ SGK I EK+V G+ Sbjct: 159 GADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 Query: 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290 M+ F E L Q FV++PSKTV LKE + EV G F VG Sbjct: 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVG 261 |
>1aip_C (C:1-104,C:164-196) EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus}Length = 137 | Back alignment and structure |
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>1xb2_B (B:46-291) EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus}Length = 246 | Back alignment and structure |
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>2cp9_A (A:) EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens}Length = 64 | Back alignment and structure |
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>1xb2_B (B:1-45) EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus}Length = 45 | Back alignment and structure |
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>1tfe_A (A:1-50,A:110-145) Elongation factor TS; 1.70A {Thermus thermophilus}Length = 86 | Back alignment and structure |
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>1tfe_A (A:51-109) Elongation factor TS; 1.70A {Thermus thermophilus}Length = 59 | Back alignment and structure |
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>1aip_C (C:105-163) EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus}Length = 59 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 296 | elongation factor Ts [Candidatus Liberibacter asiaticus | ||
1efu_B_1-265 | 265 | Elongation factor TS; complex (TWO elongation fact | 100.0 | |
1xb2_B_46-291 | 246 | EF-TS, elongation factor TS, mitochondrial, EF-TSM | 100.0 | |
1aip_C_1-104_164-196 | 137 | EF-TS, elongation factor TS; nucleotide exchange, | 100.0 | |
2cp9_A_ | 64 | EF-TS, EF-TSMT, elongation factor TS, mitochondria | 99.84 | |
1xb2_B_1-45 | 45 | EF-TS, elongation factor TS, mitochondrial, EF-TSM | 99.66 | |
2cwb_A_ | 108 | Chimera of immunoglobulin G binding protein G and | 96.36 | |
1vej_A_ | 74 | Riken cDNA 4931431F19; UBA domain, three helix bun | 96.28 | |
1wj7_A_ | 104 | Hypothetical protein (RSGI RUH-015); UBA domain, u | 96.17 | |
1vg5_A_ | 73 | RSGI RUH-014, rhomboid family protein; UBA domain, | 96.16 | |
2dna_A_ | 67 | Unnamed protein product; ubiquitin associated doma | 96.14 | |
2dah_A_ | 54 | Ubiquilin-3; UBA domain, structural genomics, NPPS | 95.99 | |
1wiv_A_ | 73 | UBP14, ubiquitin-specific protease 14; ubiquitin a | 95.96 | |
3ihp_A_707-781 | 75 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 95.95 | |
1wr1_B_ | 58 | Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu | 95.88 | |
2dai_A_ | 83 | Ubadc1, ubiquitin associated domain containing 1; | 95.82 | |
2g3q_A_ | 43 | Protein YBL047C; endocytosis, solution structure, | 95.53 | |
1veg_A_ | 83 | NEDD8 ultimate buster-1; ubiquitin associated doma | 95.52 | |
1wgn_A_ | 63 | UBAP1, ubiquitin associated protein; ubiquitin ass | 95.35 | |
2qsf_X_105-171 | 67 | RAD23, UV excision repair protein RAD23; alpha-bet | 95.33 | |
1oqy_A_126-224 | 99 | HHR23A, UV excision repair protein RAD23 homolog A | 95.28 | |
1wji_A_ | 63 | Tudor domain containing protein 3; UBA domain, str | 95.23 | |
1ify_A_ | 49 | HHR23A, UV excision repair protein RAD23 homolog A | 95.19 | |
1oqy_A_309-368 | 60 | HHR23A, UV excision repair protein RAD23 homolog A | 95.16 | |
2dak_A_ | 63 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 94.72 | |
1dv0_A_ | 47 | DNA repair protein HHR23A; helical bundle, DNA bin | 94.07 | |
1tr8_A_63-102 | 40 | Conserved protein (MTH177); chaperones, nascent po | 93.7 | |
2bwb_A_ | 46 | Ubiquitin-like protein DSK2; UBA, signaling protei | 93.65 | |
2dag_A_ | 74 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 93.26 | |
3ihp_A_637-706 | 70 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 93.2 | |
2cpw_A_ | 64 | CBL-interacting protein STS-1 variant; ubiquitin a | 93.07 | |
1vek_A_ | 84 | UBP14, ubiquitin-specific protease 14, putative; U | 93.04 | |
2jy5_A_ | 52 | Ubiquilin-1; UBA, alternative splicing, cytoplasm, | 92.59 | |
3bq3_A_1-65 | 65 | Defective in cullin neddylation protein 1; ubiquit | 91.23 | |
1tfe_A_1-50_110-145 | 86 | Elongation factor TS; 1.70A {Thermus thermophilus} | 99.81 | |
1tfe_A_51-109 | 59 | Elongation factor TS; 1.70A {Thermus thermophilus} | 99.68 | |
1aip_C_105-163 | 59 | EF-TS, elongation factor TS; nucleotide exchange, | 99.68 | |
1tfe_A_1-50_110-145 | 86 | Elongation factor TS; 1.70A {Thermus thermophilus} | 98.36 | |
1aip_C_1-104_164-196 | 137 | EF-TS, elongation factor TS; nucleotide exchange, | 98.31 | |
1xb2_B_46-291 | 246 | EF-TS, elongation factor TS, mitochondrial, EF-TSM | 98.03 | |
1efu_B_1-265 | 265 | Elongation factor TS; complex (TWO elongation fact | 96.54 |
>1efu_B (B:1-265) Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=621.30 Aligned_cols=265 Identities=38% Similarity=0.566 Sum_probs=250.9 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEC Q ss_conf 73558999999987199989999999962999899999999823889986510336422000044078853699998403 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVET 81 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincET 81 (296) |+||+++||+||++||||||||||||++|+||+|+|++|||++|+++|+||++|.|+||+|+++.++ +.|+|+|||||| T Consensus 1 a~is~~~ik~LR~~Tgag~~~CKkAL~~~~gd~~~A~~~Lrk~G~~~a~k~~~r~~~eG~i~~~~~~-~~~~ivElncET 79 (265) T 1efu_B 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQT 79 (265) T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESC T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECCC T ss_conf 9778999999998869859999999998489899999999997179888652870557659999749-879999983356 Q ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 10102267999999888753103356577864004100001467789999854343102444310222210000013532 Q gi|254780778|r 82 DSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASP 161 (296) Q Consensus 82 DFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~ 161 (296) ||||||+.|++|+.++++.++.++.+.. ...+.|++|.+.++++++||||.|||+..+ +++++++|.|+ T Consensus 80 DFVArn~~F~~l~~~ia~~~~~~~~~~~-------~~~~~tv~d~i~~~~~~igEni~l~R~~~~--~~~~v~~y~H~-- 148 (265) T 1efu_B 80 DFVAKDAGFQAFADKVLDAAVAGKITDV-------EVLKAQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG-- 148 (265) T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET-- T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCEEEEEECC-- T ss_conf 5330767899999999999984488889-------998606899999999885446210126897--17725898669-- Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 34603443444303543215789998856556676543320458783627777665666776312578678997774016 Q gi|254780778|r 162 SEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 (296) Q Consensus 162 ~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gk 241 (296) |+||++|++++++. ++++++||||+||+|.||++++||++++++|++++.+|+..+|||++|++||++|| T Consensus 149 ----g~ig~lv~~~~~~~------~~ak~iAmhiaa~~P~~l~~~~vp~~~i~~e~~i~~~q~~~~gKP~~i~ekIveGk 218 (265) T 1efu_B 149 ----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 (265) T ss_dssp ----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred ----CCEEEEEECCCCHH------HHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC T ss_conf ----86068995367649------99998889998518743883559999999999999999975399888998884053 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC Q ss_conf 76664233302560002777439999987764207982899889876224124 Q gi|254780778|r 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294 (296) Q Consensus 242 l~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~~ 294 (296) |+|||+|+|||+||||+||++||++||++. +++|++|+||+|||..| T Consensus 219 l~k~~~E~~LleQ~fi~D~~~tV~~~l~~~------~i~V~~F~R~evGEg~e 265 (265) T 1efu_B 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 265 (265) T ss_dssp HHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTSC T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCEE T ss_conf 102112214543643169963799999976------99899999995478655 |
>1xb2_B (B:46-291) EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} | Back alignment and structure |
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>1aip_C (C:1-104,C:164-196) EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} | Back alignment and structure |
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>2cp9_A (A:) EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1xb2_B (B:1-45) EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} | Back alignment and structure |
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>2cwb_A (A:) Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A | Back alignment and structure |
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>1vej_A (A:) Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} | Back alignment and structure |
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>1wj7_A (A:) Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} | Back alignment and structure |
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>1vg5_A (A:) RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
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>2dna_A (A:) Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
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>2dah_A (A:) Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
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>1wiv_A (A:) UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
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>3ihp_A (A:707-781) Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
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>1wr1_B (B:) Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
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>2dai_A (A:) Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>2g3q_A (A:) Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
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>1veg_A (A:) NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} | Back alignment and structure |
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>1wgn_A (A:) UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
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>1oqy_A (A:126-224) HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} | Back alignment and structure |
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>1wji_A (A:) Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} | Back alignment and structure |
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>1ify_A (A:) HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
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>1oqy_A (A:309-368) HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} | Back alignment and structure |
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>2dak_A (A:) Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1dv0_A (A:) DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
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>1tr8_A (A:63-102) Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis} | Back alignment and structure |
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>2bwb_A (A:) Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
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>2dag_A (A:) Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>3ihp_A (A:637-706) Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
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>2cpw_A (A:) CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1vek_A (A:) UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
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>2jy5_A (A:) Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B | Back alignment and structure |
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>1tfe_A (A:1-50,A:110-145) Elongation factor TS; 1.70A {Thermus thermophilus} | Back alignment and structure |
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>1tfe_A (A:51-109) Elongation factor TS; 1.70A {Thermus thermophilus} | Back alignment and structure |
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>1aip_C (C:105-163) EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} | Back alignment and structure |
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>1tfe_A (A:1-50,A:110-145) Elongation factor TS; 1.70A {Thermus thermophilus} | Back alignment and structure |
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>1aip_C (C:1-104,C:164-196) EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} | Back alignment and structure |
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>1xb2_B (B:46-291) EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} | Back alignment and structure |
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>1efu_B (B:1-265) Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} | Back alignment and structure |
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