254780806

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/263 (90%), Positives = 249/263 (94%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           MEEK +RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL DR
Sbjct: 1   MEEKNTRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELQDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           +YSSY++LI EK ++Q+LI T+IPNLSIIPSTMDLLGIEM LGGEKDRLFRLDKAL+V+L
Sbjct: 61  EYSSYEVLIGEKGVDQVLINTSIPNLSIIPSTMDLLGIEMRLGGEKDRLFRLDKALNVKL 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYIFLDCPPSFNLLTMNAM AADSILVPLQCEFFALEGLSQLLETVEEVRRTVN  
Sbjct: 121 NKKFSYIFLDCPPSFNLLTMNAMVAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNLE 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGIILTMFDSRNSLSQQVVSDVRKNLG KVYNTVIPRNVRISEAPSYGKPAIIYDLK
Sbjct: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGEKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKE 263
           CAGSQAYLKLASE+IQQER RKE
Sbjct: 241 CAGSQAYLKLASEIIQQERQRKE 263

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  414 bits (1064), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 232/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL++ E+ I+++ ++TA+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMVGERGISEVTLETAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSTPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMGFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRVAA 264

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  414 bits (1064), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 232/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL++ E+ I+++ ++TA+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMVGERGISEVTLETAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSTPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMGFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 231/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL+I E+ I ++ ++TA+PNL I+PSTMDLLG+EM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMIGERGITEVTLETAVPNLFIVPSTMDLLGVEMEISQQSDRVFKLRKALSSPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMAFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 230/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  +K RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGEKHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL++ E++I  + ++ A+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMVGERSIRDVTLEAAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSSPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMTFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/260 (74%), Positives = 231/260 (88%)

Query: 5   KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSS 64
           ++RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR  SS
Sbjct: 5   RNRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIQRRDRHLSS 64

Query: 65  YDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDF 124
           Y+L++   +I  I ++TA+PNL+I+PSTMDLLG+EM +  E DR+FRL KAL+      +
Sbjct: 65  YELMMGTHSIGAIALETAVPNLTIVPSTMDLLGVEMEISRESDRVFRLRKALAAPEALAY 124

Query: 125 SYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQ 184
           SY+ +DCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV++VRRTVN +LDIQ
Sbjct: 125 SYVLVDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVDQVRRTVNPSLDIQ 184

Query: 185 GIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS 244
           GI+LTMFDSRN+L+QQVVSDVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLKCAGS
Sbjct: 185 GIVLTMFDSRNNLAQQVVSDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLKCAGS 244

Query: 245 QAYLKLASELIQQERHRKEA 264
           QAYL+LASE+IQ+ER RK A
Sbjct: 245 QAYLQLASEVIQRERQRKAA 264

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 231/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL+I ++ I ++ ++TA+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMIGDRGIPEVTLETAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSSPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMAFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGDKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/264 (74%), Positives = 231/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL++ ++ I ++ ++TA+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMVGDRGIPEVTLETAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSSPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMAFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGDKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/265 (74%), Positives = 233/265 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  +++RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 7   MIGERNRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 66

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDLL+    I   + +TA+PNL I+PSTMDLLG+EM +  + DR+FRL +AL+   
Sbjct: 67  KVSSYDLLVGTHTILDTVQETAVPNLYIVPSTMDLLGVEMEIAQQPDRVFRLRRALNGAG 126

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
            + FSYI +DCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV++VRRTVN +
Sbjct: 127 ATAFSYILVDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVDQVRRTVNPS 186

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFDSRN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 187 LDIQGIVLTMFDSRNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 246

Query: 241 CAGSQAYLKLASELIQQERHRKEAA 265
           CAGSQAYL+LASE+IQ+ER RK AA
Sbjct: 247 CAGSQAYLQLASEVIQRERQRKAAA 271

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/264 (74%), Positives = 230/264 (87%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           M  ++ RIITIANQKGGVGKTTTAINL+TALAAIGE VL++DLDPQGNASTGLGI+  DR
Sbjct: 1   MAGERHRIITIANQKGGVGKTTTAINLATALAAIGERVLIVDLDPQGNASTGLGIDRRDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           K SSYDL++ ++ I  + ++TA+PNL I+PSTMDLLGIEM +  + DR+F+L KALS   
Sbjct: 61  KLSSYDLMVGDRGIGDVTLETAVPNLFIVPSTMDLLGIEMEISQQSDRVFKLRKALSSPE 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
              FSYI LDCPPSFNLLTMNAMAAA S+LVPLQCEFFALEGLSQLLETV +VRRTVN  
Sbjct: 121 AMAFSYILLDCPPSFNLLTMNAMAAAHSVLVPLQCEFFALEGLSQLLETVSQVRRTVNPR 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGI+LTMFD+RN+L+QQVV+DVR +LG KVY+T+IPRNVR+SEAPSYGKPAI+YDLK
Sbjct: 181 LDIQGIVLTMFDARNNLAQQVVNDVRTHLGEKVYHTLIPRNVRVSEAPSYGKPAILYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEA 264
           CAGSQAYL+LASE+IQ+ER R  A
Sbjct: 241 CAGSQAYLQLASEVIQRERQRLAA 264

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  142 bits (359), Expect = 1e-34
 Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 26/228 (11%)

Query: 9   ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGN--ASTGLGIELYDR-KYSSY 65
           I IA  KGGVGKTT A NL+ ALA  G  VLLIDLDPQ N  +S G G +L D  K    
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLE 60

Query: 66  DLLIEEKNINQILIQT--AIPNLSIIPSTMDLLG--IEMILGGEKDRLFRLDKALSVQLT 121
            +  +        I     +  L +IPS + L     E+IL G ++ L +L         
Sbjct: 61  IVDAQPLQHIAAAIVPSRNLDPLLLIPSNLSLANFESELILEGGEEGLIKL--------- 111

Query: 122 SDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSAL 181
             + Y+ +D  P    LT NA+ AAD ++VP++ E  A+ G  +LLE VE +       L
Sbjct: 112 -AYDYVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLG------L 164

Query: 182 DIQGIILTMFDSRN-SLSQQVVSDVRKNLGG--KVYNTVIPRNVRISE 226
            I G++L   D  +     + +  + +  G    +   VIPR++ +SE
Sbjct: 165 KILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALSE 212

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 212

 Score =  112 bits (283), Expect = 8e-26
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 30/244 (12%)

Query: 8   IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIE----------L 57
           +I + N KGG GKTTTA +L+  LA  G  VL IDLDPQ + S   G +          L
Sbjct: 106 VIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETL 165

Query: 58  YDR-KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIE------MILGGEKDRLF 110
           Y   +Y       E + +++I+ +T  P L ++P  ++L+  E      +  G   D +F
Sbjct: 166 YGAIRYDD-----ERRPLSEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIF 220

Query: 111 --RLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLE 168
             R+ +AL+ ++  D+  + +DCPP    LT++A+ AA  +L+ +  +   +  +SQ L 
Sbjct: 221 FARVGEALA-EVEDDYDVVVIDCPPQLGFLTLSALCAATGVLITVHPQMLDVMSMSQFLL 279

Query: 169 TVEEVRRTVNSA-----LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223
              ++   V  A      D    ++T ++  +    Q+V+ +R   G  V    + ++  
Sbjct: 280 MTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQMVAFLRSLFGDHVLTNPMLKSTA 339

Query: 224 ISEA 227
           IS+A
Sbjct: 340 ISDA 343

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. Length = 387

 Score =  100 bits (250), Expect = 5e-22
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 5   KSRIITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQ-GNASTGLGIELYDRKY 62
            +++I + + KGGVGKTT   NL  ALAA+ G+ VLLID D   GN S  LG+E   +  
Sbjct: 1   MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVE--SKPT 58

Query: 63  SSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTS 122
           + +D+L  E +I  I+ +T    L ++P    L  +  +   + + + +       +L  
Sbjct: 59  TLHDVLAGEASIEDIIYETPQDGLYVLPGGSGLEDLAKLDPEDLEDVIK-------ELEE 111

Query: 123 DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALD 182
            + YI +D     +  T++ + ++D +++    E  ++    + ++ +      +   L 
Sbjct: 112 LYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKIL----SKLGLDLL 167

Query: 183 IQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCA 242
            + ++L    S           ++      V   VIP +  +  A + GKP ++Y     
Sbjct: 168 GRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQ-VIPFDPEVRRALAEGKPIVLYSPNSK 226

Query: 243 GSQAYLKLASELIQ 256
            SQA  +LA++L  
Sbjct: 227 ASQAIKELAAKLAG 240

Length = 262

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 20/240 (8%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG------IELYDR 60
           ++I + N KGG GKTTT+ +L+  LA  G  VL +DLDPQ + S  LG      +   + 
Sbjct: 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANET 181

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIE------MILGGEKDRLF--RL 112
            Y++       + +  ++  T    L ++P  ++L+  E      +   G +D LF  R+
Sbjct: 182 LYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRV 241

Query: 113 DKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEE 172
            +A   ++  D+  + +DCPP    LT++ + AA S+++ +  +   +  +SQ L    +
Sbjct: 242 AQAFD-EVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRD 300

Query: 173 VRRTVNSA-----LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEA 227
           +   V  A      D    +LT ++ +++   +V + +R      V    + ++  +S+A
Sbjct: 301 LLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHVLTNPMVKSAAVSDA 360

Length = 405

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 61/240 (25%)

Query: 8   IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDL 67
           +I + + KGGVGKTTT  NL TALA +G  V+LID D                       
Sbjct: 1   VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL---------------------- 38

Query: 68  LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYI 127
                          + NL             +ILG E   ++ L   L+        YI
Sbjct: 39  --------------GLRNLD------------LILGLENRVVYTLHDVLAGD------YI 66

Query: 128 FLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGII 187
            +D P       + A+A AD  L+    E  +L    ++   +E +       + + G+I
Sbjct: 67  LIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL------GIKVVGVI 120

Query: 188 LTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQAY 247
           +            +V D+ + LG  +   VIP +  +  A + G+P ++   K   +QAY
Sbjct: 121 VNRVRPDMVEGGDMVEDIEEILGVPLLG-VIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.. Length = 179

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 30/233 (12%)

Query: 8   IITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYDRKYSSYD 66
           +I +A  KGGV KT+ +++L+  LA  G  VLL++  DPQG AS   G  + D    + D
Sbjct: 108 VIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGW-VPDLHIHAED 166

Query: 67  LLI-----EEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDR---------LFRL 112
            L+     E+ +    +  T  P L IIPS + L  IE  L G+ D          + RL
Sbjct: 167 TLLPFYLGEKDDATYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRL 226

Query: 113 DKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEE 172
             A+   +  D+  I +D  P+  + T+N + AAD ++VP   E F      Q  + + +
Sbjct: 227 --AIE-TVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRD 283

Query: 173 VRRTVNSALDIQG------IILTMFDSRN-SLSQQVVSDVRKNLGGKVYNTVI 218
           + + V    D++G      I+LT + + N S S  +   +R   G  V   V+
Sbjct: 284 LLKNV----DLKGFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKNVV 332

Length = 388

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 43/233 (18%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD 66
            +I + N+KGG GK+TTA++++ AL  +G  V  IDLD +    T        R   +  
Sbjct: 1   HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLT--------RYIENRA 52

Query: 67  LLIEEKNINQILIQTAIPNLSIIPSTMDL-LGIEMILGGEKDRLFRLDKALSVQLTSDFS 125
              E   +        +P    +P  + L   +  +  GE     RL++A+   L  D  
Sbjct: 53  ATAERTGL-------DLP----VPKHLCLPDDVSEVFDGESADDARLEEAV-ADLEQDAD 100

Query: 126 YIFLDCPPSFNLLTMNAMAAADSILVPLQCEF-------------FALEGLSQLLETVEE 172
           +I +D P S + L+  A + AD+++ PL   F             F +   S   E V E
Sbjct: 101 FIVIDTPGSDSPLSRLAHSRADTLVTPLNDSFVDFDLLGQVDPETFKVTRPSFYAEMVWE 160

Query: 173 VRRTVNSA--LDIQGII----LTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIP 219
            R+    A    I  I+    L+  ++RN   ++ V D    L  +V   V P
Sbjct: 161 ARKKRAQADRAPIDWIVLRNRLSTLEARN---KRRVEDALNELSKRVGFRVAP 210

MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. Length = 261

 Score = 66.2 bits (161), Expect = 9e-12
 Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 26/237 (10%)

Query: 2   EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYDR 60
           ++K   ++ + + KGGV KT++A++ +  LA  G  VLLI+  DPQG AS   G  + D 
Sbjct: 102 DDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGY-VPDL 160

Query: 61  KYSSYDLLI-----EEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKA 115
              + D L+     E  N    +  T  P L IIPS + L  IE  L    D   +L   
Sbjct: 161 HIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHDA-GKLPHP 219

Query: 116 LSVQLTS-------DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLE 168
             + L +       ++  I +D  P+    T+N + AAD I+V    E F    + Q   
Sbjct: 220 PHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYVSVLQFFT 279

Query: 169 TVEEVRRTVNSALDIQG------IILTMFDSRN-SLSQQVVSDVRKNLGGKVYNTVI 218
            + ++  TV    D+ G      ++LT +     + S+ +   +R   G  V   V+
Sbjct: 280 MLLDLLATV----DLGGFEPVVRLLLTKYSLTVGNQSRWMEEQIRNTWGSMVLRQVV 332

Length = 387

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 41/205 (20%)

Query: 9   ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLL 68
           I + + KGG GKTT    ++ ALAA+ +NV+L D D                        
Sbjct: 2   IAVISGKGGTGKTT----VTAALAALLKNVVLADCD------------------------ 33

Query: 69  IEEKNINQILIQTAIPNLSIIPST-----MDLLGIEMILGGEKDRLFRLDKALSVQLTSD 123
           ++  N++  L          I           L I   L G+     R   A  +     
Sbjct: 34  VDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEVR-KHAKEIAKAEG 92

Query: 124 FSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDI 183
              I +D PP      + ++  AD+ L+  +     L  L + +E V      V      
Sbjct: 93  AELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPV------ 146

Query: 184 QGIILTMFDSRNSLSQQVVSDVRKN 208
            G+++  +D  + +++++     + 
Sbjct: 147 -GVVINKYDLNDEIAEEIEDYCEEE 170

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.. Length = 179

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 14/202 (6%)

Query: 15  KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIE--LYDRKYSSYD-LLIEE 71
           KGGVGKTT +   +  LA  G+ VLL+  DP  + S     E           + L   E
Sbjct: 8   KGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAME 67

Query: 72  KNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEK-----DRLFRLDKALSVQLTSDFSY 126
            +  + L +     L  I + + L  ++ IL  E      + +   D+       +++  
Sbjct: 68  IDPQEALEEYRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDV 127

Query: 127 IFLDCPP---SFNLLTM-NAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALD 182
           +  D  P   +  LL++   ++ A  IL   +   F L  + + + ++ E  R +   L 
Sbjct: 128 VVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKM-SLYETERAIQ-ELA 185

Query: 183 IQGIILTMFDSRNSLSQQVVSD 204
             GI +        L + V + 
Sbjct: 186 KYGIDVDAVIVNQLLPEDVTNC 207

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.. Length = 254

 Score =  107 bits (269), Expect = 3e-24
 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 24/260 (9%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRKYSSY 65
           RIITIA+ KGG GKTT   NL  ALA +G+ VL +D D    N    LG+E  D+  + +
Sbjct: 1   RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGME--DKPVTLH 58

Query: 66  DLLIEEKNINQILIQTAIPN-LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDF 124
           D+L  E +I   + +   P  + +IP+ + L G+       K    +L+  L  ++  D 
Sbjct: 59  DVLAGEADIKDAIYEG--PFGVKVIPAGVSLEGL------RKADPDKLEDVLK-EIIDDT 109

Query: 125 SYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQ 184
            ++ +D P       + A+AAAD +L+ +  E  +   ++  L+T     +       I 
Sbjct: 110 DFLLIDAPAGLERDAVTALAAADELLLVVNPEISS---ITDALKTKIVAEK---LGTAIL 163

Query: 185 GIILTMFDS-RNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAG 243
           G++L      +  L ++ +  +   L   V   V+P +  +  A ++G+P +IY+     
Sbjct: 164 GVVLNRVTRDKTELGREEIETI---LEVPVL-GVVPEDPEVRRAAAFGEPVVIYNPNSPA 219

Query: 244 SQAYLKLASELIQQERHRKE 263
           +QA+++LA+EL   E   KE
Sbjct: 220 AQAFMELAAELAGIEYEPKE 239

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 31/261 (11%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDR-KYSS 64
           R+I I + KGGVGKTTT  NL TALA +G+ V+LID D    N    LG+E  +R  Y+ 
Sbjct: 2   RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLE--NRIVYTL 59

Query: 65  YDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFRLD-KALSVQLTS 122
            D++  E  + Q LI+   + NL ++P++            +KD +     K L  +L  
Sbjct: 60  VDVVEGECRLQQALIKDKRLKNLYLLPASQT---------RDKDAVTPEQMKKLVNELKE 110

Query: 123 DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL-----ETVEEVRRTV 177
           +F Y+ +DCP        NA+A AD  +V    E  A+    +++     + +E++   V
Sbjct: 111 EFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIV 170

Query: 178 NSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIY 237
           N       +   M    + LS   V DV + L   +   VIP +  I  + + G+P ++ 
Sbjct: 171 NR------LRPEMVKKGDMLS---VDDVLEILSIPLIG-VIPEDEAIIVSTNKGEPVVLN 220

Query: 238 DLKCAGSQAYLKLASELIQQE 258
           D K    +A+  +A  ++ +E
Sbjct: 221 D-KSRAGKAFENIARRILGEE 240

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. Length = 261

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 23/264 (8%)

Query: 6   SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRK--Y 62
           +RII + + KGGVGKTTT  N+ TALA +G+ V+LID D    N    +G+E    +  Y
Sbjct: 2   ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLE---NRIVY 58

Query: 63  SSYDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFR--LDKALSVQ 119
              D++  E  +NQ LI+   + NL ++P++            +KD L    + K ++  
Sbjct: 59  DLVDVIEGEATLNQALIKDKRLENLFLLPASQT---------RDKDALTPEGVKKVVNEL 109

Query: 120 LTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVE-EVRRTVN 178
              DF YI +D P        NA+  AD  +V    E  ++    +++  +E + RR   
Sbjct: 110 KAMDFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEI 169

Query: 179 SALDIQGIILTMFDSRNSLSQQVVS--DVRKNLGGKVYNTVIPRNVRISEAPSYGKPAII 236
                + ++L  +        +++S  DV + L   +   VIP +  +  A + G+P +I
Sbjct: 170 GEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIG-VIPEDQDVLRASNKGEP-VI 227

Query: 237 YDLKCAGSQAYLKLASELIQQERH 260
            D      +AY  +A  L+ +E  
Sbjct: 228 LDDNSDAGKAYRDIARRLLGEEVP 251

Length = 272

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 32/268 (11%)

Query: 6   SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRK--Y 62
           +RII + + KGGVGKTT++  ++T LA  G+  ++ID D    N    +G E   R+  Y
Sbjct: 2   ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCE---RRVVY 58

Query: 63  SSYDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFR--LDKALSVQ 119
              +++  +  +NQ LI+     NL I+P++            +KD L R  + K L   
Sbjct: 59  DFVNVIQGDATLNQALIKDKRTENLYILPASQTR---------DKDALTREGVAKVLDDL 109

Query: 120 LTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETV-EEVRRTVN 178
              DF +I  D P       + A+  AD  ++    E  ++    ++L  +  + RR  N
Sbjct: 110 KAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAEN 169

Query: 179 SALDI-QGIILTMFD----SRNSL--SQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYG 231
               I + ++LT ++    SR  +   + V+  +R  L G     VIP +  +  A + G
Sbjct: 170 GEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVG-----VIPEDQSVLRASNQG 224

Query: 232 KPAIIYDLKCAGSQAYLKLASELIQQER 259
           +P +I D++    +AY      L+ +ER
Sbjct: 225 EP-VILDIEADAGKAYADTVDRLLGEER 251

Length = 270

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 44/272 (16%)

Query: 6   SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSS 64
             II + + KGGVGK+T  +NL+ ALA+ G+ V L+D D  G +    +G+E        
Sbjct: 47  KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLE-------- 98

Query: 65  YDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDR-LFRLDKALSV--QLT 121
            +++ +  N    ++     NL        L+ +  +L    D  ++R  K  S+  Q  
Sbjct: 99  GEVVHQSDNGWIPVVVN--KNLK-------LMSMGFLLKPRDDSVIWRGPKKNSMIKQFL 149

Query: 122 SD-----FSYIFLDCPPSFN---LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEV 173
            D       Y+ +D PP  +   L  +  +  +D  ++    +  A      L +  +E+
Sbjct: 150 KDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVA------LQDVRKEI 203

Query: 174 RRTVNSALDIQGIILTMF--------DSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225
                + + I G++  M          S N         + + LG       +P +  I+
Sbjct: 204 DFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLP-LLGSLPLDPLIA 262

Query: 226 EAPSYGKPAIIYDLKCAGSQAYLKLASELIQQ 257
           E+   G P +        S+A+  +A +L++Q
Sbjct: 263 ESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQ 294

Length = 300

 Score =  220 bits (560), Expect = 4e-58
 Identities = 112/261 (42%), Positives = 158/261 (60%), Gaps = 4/261 (1%)

Query: 5   KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGNASTGLGIELYDRKYS 63
             +II +ANQKGGVGKTTTA+NL+ ALA   G+ VLLIDLDPQG+ ++ LG+   D +  
Sbjct: 1   MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRP-DLEGD 59

Query: 64  SYDLLIEEKNINQILIQT-AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTS 122
            Y+LL   K    IL  T  I  L +IPS +DL     I      +   L + L   +  
Sbjct: 60  LYNLLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLD-PVKD 118

Query: 123 DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALD 182
           D+ YI +D PPS  +LT+NA+AAAD +L+P+Q EF  LEGL QLL T+E++ +   + L 
Sbjct: 119 DYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLI 178

Query: 183 IQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCA 242
           + GI++T FDSR  L+ +V+ ++++ LG  V  T IPR V   EA + GKP   YD K  
Sbjct: 179 VVGILITRFDSRTKLADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPLYEYDPKSK 238

Query: 243 GSQAYLKLASELIQQERHRKE 263
            ++ Y +LA EL+++    K 
Sbjct: 239 AAEEYYELAKELLEELLKLKP 259

Length = 259

 Score = 76.8 bits (189), Expect = 5e-15
 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 46/172 (26%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD 66
           +II + NQKGG GKTT A NL++ L A G  VLL+DLDPQG+++                
Sbjct: 1   KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD--------------- 45

Query: 67  LLIEEKNINQILIQTAIPNLSIIPS-TMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFS 125
              E +   + L    IP + +  S   DL                       ++ S + 
Sbjct: 46  -WAEAREEGEPL----IPVVRMGKSIRADLP----------------------KVASGYD 78

Query: 126 YIFLDCPPSFNLLTMNAMAAADSILVPLQCEFF---ALEGLSQLLETVEEVR 174
           Y+ +D  P  + L   A+  AD +L+P+Q   F   A   L +L++  +EV 
Sbjct: 79  YVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT 130

Length = 211

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 2   EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDR 60
               SRII I + KGGVGKTTT  NL  ++A +G  V LID D    N    LG+E  +R
Sbjct: 11  SATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLE--NR 68

Query: 61  -KYSSYDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSV 118
             Y++ D+L  E  ++Q LI+     NLS++  + +     +     +  +  L  +L  
Sbjct: 69  VLYTAMDVLEGECRLDQALIRDKRWKNLSLLAISKNRQRYNV----TRKNMNMLVDSLKN 124

Query: 119 QLTSDFSYIFLDCPPSFNLLTMNAMAAADSILV 151
           +    + YI +DCP   ++  +NA+A A   +V
Sbjct: 125 R---GYDYILIDCPAGIDVGFINAIAPAQEAIV 154

Length = 281

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 25/190 (13%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSY 65
            +I + + KGGVGK+T A+NL+ ALA +G+ VLL+D D +G +    LG+E         
Sbjct: 58  NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTE-- 115

Query: 66  DLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGG---EKDRLFRLDKALSVQLTS 122
             L+  + +  ++    I  LSI+P    L  + +I  G    K  L  L+  L      
Sbjct: 116 --LLAGEALEPVIQHDGIKVLSILP----LGPVPVIPRGLLGSKAMLQLLEDVLW----G 165

Query: 123 DFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
           ++ Y+ +D PP       T+        ++V       ALE + + ++ +E+        
Sbjct: 166 EYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTP-GKTALEDVKKAIDMLEKAGI----- 219

Query: 181 LDIQGIILTM 190
             + G++  M
Sbjct: 220 -PVLGVVENM 228

Length = 265

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 16/179 (8%)

Query: 4   KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD-PQGNASTGLGIELYDRK 61
           ++ R +     KGGVG +T A NL+  LA   G  VLL+DLD   G A+  L  +     
Sbjct: 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDP---A 158

Query: 62  YSSYDLLIEEKNINQILIQTA----IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALS 117
           +   + + + + ++Q+L+ +        L ++ +  +L     +  G  +R       L 
Sbjct: 159 FGIAEAVKQPERLDQVLLDSLLTRLASGLKLLAAPTELAKNYDLKTGAVER-------LL 211

Query: 118 VQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRT 176
             L   F ++ +D P  +   T   ++ +D I++  +    +L    +LL+ ++ +R  
Sbjct: 212 DLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPN 270

Length = 366

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
               +  ++     +  +GK+    N +  +A+ G+  LLID D +  A + + +     
Sbjct: 541 KSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVA--RE 598

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
                DLL   +++   L  +   +L ++ S +   GI  +L      +F    +L +  
Sbjct: 599 VSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITELLASP--AMF----SLVIHA 652

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAAD--SILVPLQCEFFALEGLSQLLETVEEVRRTVN 178
                 + +D         +  M AA   +I++ L   +            VE  R    
Sbjct: 653 RLYSDCVVVDVGT---ADPVRDMRAAARLAIIMLLVTAY----DRV----VVECGRADAQ 701

Query: 179 S----ALDIQGIILTMFD 192
                  ++ G+ L M D
Sbjct: 702 GISRLNGEVTGVFLNMLD 719

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. Length = 754

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 8   IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDL 67
           I+ +   +GGVG T+    L+ +L  +GENVL+ID  P         ++   R+  +  L
Sbjct: 3   ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARAL 62

Query: 68  LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALS--------VQ 119
           L  +   +  L  T         S +DLL    +   E++        L         ++
Sbjct: 63  LDGQDWRDAGLRYT---------SQLDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLK 113

Query: 120 LTSDFSYIFLDCPPSFNLLTMNAMAAADSILV 151
            +  + +I LD P   + LT   ++  D  L 
Sbjct: 114 ASGRYQWILLDLPRGASPLTRQLLSLCDHSLA 145

Length = 250

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 29/39 (74%), Positives = 34/39 (87%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          +I +ANQKGGVGKTTTA+NL+ ALA  G+ VLLIDLDPQ
Sbjct: 1  VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.. Length = 104

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47
          +I I   KGGVGKTT   NL++AL  +GE VL IDLDPQ 
Sbjct: 3  VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. Length = 246

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44
          +I + + KGGVGK+T A+NL+ ALA +G  V L+D D
Sbjct: 1  VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.. Length = 169

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44
          II + + KGGVGKT  + NL+ ALA +G+ VLL+D D
Sbjct: 1  IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.. Length = 139

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 29/37 (78%)

Query: 8   IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44
           II +++ KGGVGK++TA+NL+ ALAA G  V ++D D
Sbjct: 109 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145

Length = 369

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42
          +I +   KGGVGKTT A NL+ ALA  G+ VLLID
Sbjct: 1  VIVVTG-KGGVGKTTLAANLAAALAKRGKRVLLID 34

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.. Length = 99

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 8  IITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQ 46
          +I     KGGVG TT A NL+ ALA   G  VLL+DLD Q
Sbjct: 1  VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.. Length = 106

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          KGG+GK+TT+ NLS ALA +G+ VL +  DP+
Sbjct: 8  KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.. Length = 212

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 29/36 (80%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGG+GK+TT+ NL+ ALA +G+ VL++  DP+ +++
Sbjct: 9  KGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADST 44

Length = 278

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          KGG+GK+TT+ NLS A A +G+ VL I  DP+
Sbjct: 10 KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41

Length = 270

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL 53
          KGG+GK+TT+ N S ALA +G+ VL++  DP+ + ST L
Sbjct: 8  KGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKAD-STRL 45

Length = 269

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 4  KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL 53
          KK++II I   KGG+GK+ T  NLS  +A  G+ VLLI  DP+ + ++ L
Sbjct: 29 KKTQIIAIYG-KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLL 77

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.. Length = 329

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGG+GK+TT+ NLS A A +G+ VL I  DP+ +++
Sbjct: 8  KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDST 43

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. Length = 268

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          KGG+GK+TT+ NLS ALA  G+ VL I  DP+
Sbjct: 8  KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.. Length = 267

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGG+GK+TT  NLS ALA +G+ V+++  DP+ +++
Sbjct: 9  KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.. Length = 270

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL 53
          KGG+GK+TT  NL+ AL+ +G  +LL+  DP+ +++  L
Sbjct: 9  KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRML 47

Length = 273

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          KGG+GK+TT+ N+S ALA  G+ VL I  DP+
Sbjct: 8  KGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39

Length = 290

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKY 62
          KGGVGKTT A  L+  LA  G+ VL ID DP  +    L +E+ + K 
Sbjct: 7  KGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEVGEIKL 53

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.. Length = 116

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG 54
          KGG+GK+TT  N++ ALA  G+ VL++  DP+ + +  L 
Sbjct: 9  KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLV 48

Length = 279

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46
          KGG+GK+TT  N++ ALA +G+ V+++  DP+
Sbjct: 8  KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. Length = 275

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGGVGKTT + +L+  LA + E+VL+I  DP  N S
Sbjct: 27 KGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62

Length = 323

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGGVGKTT +   +  L+  G+ VLL+  DP  + S
Sbjct: 9  KGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLS 44

This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 15 KGGVGKTT-TAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL 57
          KGGVGKTT  A+ L   L+  G NVL++D DP  N    LG+E 
Sbjct: 8  KGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEE 51

Length = 255

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 7  RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44
            + +A+ KGG GKTT A NL+  L      ++L D D
Sbjct: 2  MQVAVASGKGGTGKTTVAANLAVLL-GDKYKLVLADCD 38

Length = 284

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDP 45
          +GGVG T+    L  AL  +GE+VL+ID  P
Sbjct: 10 RGGVGTTSLTAALGWALQQLGESVLVIDASP 40

This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function. Length = 244

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1  MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          M ++  R I     KGG+GK+TT+ N   A+A +G+ +L++  DP+ +++
Sbjct: 1  MTDENIRQIAFYG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADST 49

Length = 296

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 14/36 (38%), Positives = 26/36 (72%)

Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50
          KGG+GK+TT+ N   AL  +G+ +L++  DP+ +++
Sbjct: 12 KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADST 47

Length = 295

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 114 KALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEV 173
           + L + L   + YI +D PPS  LLT NA+AAAD +L+P+Q     L+GL +LLET   +
Sbjct: 30  RVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLET-LIL 88

Query: 174 RRTVNSALDIQGIILT 189
              +N  LDI GI+ T
Sbjct: 89  EDRLNPDLDILGILPT 104

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.. Length = 104

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 15  KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNI 74
           KGGVGKTT A   +  LA  G+ VLL+  DP  N S      L D        +      
Sbjct: 7   KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYR 66

Query: 75  NQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPS 134
            ++     +         + L     + G E+  L  L           +  I  D  P+
Sbjct: 67  EEVDATRRVERAWGGEGGLMLELAAALPGIEE--LASLLAVFREFSEGLYDVIVFDTAPT 124

Query: 135 FNLLTM 140
            + L +
Sbjct: 125 GHTLRL 130

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.. Length = 217

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 15  KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL-YDRKYSSYDLLIEEKN 73
           KGGVGKTT A   +  LA  G+ VLL+  DP  +      +EL +D +    +L   E +
Sbjct: 10  KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELD 69

Query: 74  INQIL---IQTAIPNLSIIPSTMDLLGIEM----ILGGEKDRLFRLDKALSVQLTSDFSY 126
             + L          L+ +  T  L GI       L G  D    L K L   ++ ++  
Sbjct: 70  PEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPG-IDEALALLKILEYYVSGEYDV 128

Query: 127 IFLDCPPSFNLLTM 140
           I +D  P+ + L +
Sbjct: 129 IVVDTAPTGHTLRL 142

Length = 322

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSY- 65
           +++ I + K G GK+TT+ N++ A A  G   LLID D +   S   G      K +   
Sbjct: 18  KVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN--SVMSGTFKSQNKITGLT 75

Query: 66  DLLIEEKNINQILIQTAIPNLSIIPS 91
           + L    +++  +  T I NL +I S
Sbjct: 76  NFLSGTTDLSDAICDTNIENLFVITS 101

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. Length = 204

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL--GIEL--YDRKY 62
           RII I   KGG GK+ T  NLS  +A +G+ VL +  DP+ ++++ L  GI L       
Sbjct: 1   RIIAIYG-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVA 59

Query: 63  SSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEM 100
           +   L  EE  +  +  +T I N S     M+L G E+
Sbjct: 60  TEKKLAGEEVKVGDVCFKTTIMNGSGGVYGMELGGPEV 97

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. Length = 296

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 16  GGVGKTTTAINLSTALAA-IGENVLLIDLD---PQGNASTGLGIELYDRKYSSYDLLIEE 71
            G GK+ TAINL+ +LA    + VLLID D   P       LG+E  +   S   LL   
Sbjct: 45  PGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPS--LHRTLGLE-AEPGLSDC-LLDPV 100

Query: 72  KNINQILIQTAIPNLSIIPS 91
            ++  +L+ T I  LS++P+
Sbjct: 101 LDLADVLVPTNIGRLSLLPA 120

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. Length = 207

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYD 59
           M + ++ ++ +      +GKT    NL+  ++   + VLLID D  +G     LG    +
Sbjct: 521 MMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN 580

Query: 60  RKYSSYDLLIEEKNINQILIQTAIPNLSIIP 90
                 D+LI + +I      T+I N  +IP
Sbjct: 581 ---GLSDILIGQGDITTAAKPTSIANFDLIP 608

Length = 719