254780863

254780863

hypothetical protein CLIBASIA_03790

GeneID in NCBI database:8209878Locus tag:CLIBASIA_03790
Protein GI in NCBI database:254780863Protein Accession:YP_003065276.1
Gene range:+(831899, 832000)Protein Length:33aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:not defined as a protein in SEED
Pathway involved in KEGG:not defined
Subsystem involved in KEGG:not defined
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVM1 TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30---
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHcc
ccccHHHHHHEHHEEEEEccccHEEEEEEEEcc
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
***GLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
*NIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
xxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxx
oooooooHHHHHHHHHHHHHHHHHHHHiiiiii
oooooooHHHHHHHHHHHHHHHHHHHHiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHHHiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

No hits with e-value below 0.005 within the first 2 iteration


Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 33 hypothetical protein CLIBASIA_03790 [Candidatus Liberib
COG0713100 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (c 96.12
PRK0571599 NADH dehydrogenase subunit K; Validated 94.23
CHL00015101 ndhE NADH dehydrogenase subunit 4L 93.43
MTH0019299 ND4L NADH dehydrogenase subunit 4L; Provisional 92.03
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion] Back     alignment and domain information
>PRK05715 NADH dehydrogenase subunit K; Validated Back     alignment and domain information
>CHL00015 ndhE NADH dehydrogenase subunit 4L Back     alignment and domain information
>MTH00192 ND4L NADH dehydrogenase subunit 4L; Provisional Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00