254780916

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/496 (59%), Positives = 376/496 (75%), Gaps = 16/496 (3%)

Query: 1   MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV----SDLSTISKIQVNVI 56
           M  K+SLD  + +LIID+DDEQ  +IK+++ESYGYDVFI++V     DL  + KI+V+VI
Sbjct: 1   MHIKRSLDDRQGLLIIDQDDEQSNLIKEYMESYGYDVFIIDVLSQCPDLLVLDKIKVDVI 60

Query: 57  FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQL 116
           FLSLIN  DDK  +L+ IV+K+P +PIIVQT  D +KIL   L +RI K F N VS++ L
Sbjct: 61  FLSLINFGDDKGKVLQTIVEKMPNIPIIVQTKHDELKILISSLQDRIPKCFFNPVSQEHL 120

Query: 117 CDSIICAL-REGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVG 175
             SI   L R+    ++E ++  LDSLIAVS  MIQV++LARKA  C IP+MI+GEFGVG
Sbjct: 121 FYSIRSILERKKNSSAEEQKYFTLDSLIAVSSEMIQVINLARKAVYCTIPVMIEGEFGVG 180

Query: 176 KKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGG 235
           KK L+  IH SG RA FPF +VNCG+ DQDK+EK LFG VDLQ +NS  FLGKF+EANGG
Sbjct: 181 KKTLAHSIHASGSRASFPFVVVNCGISDQDKVEKDLFGKVDLQGENSTYFLGKFVEANGG 240

Query: 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295
           TI+LEEP AL L VQ +I +FIETGKIEF DSR A++LDVRLIF TEKNL  +VK+ VF 
Sbjct: 241 TILLEEPSALSLKVQRKILHFIETGKIEFDDSRNALKLDVRLIFATEKNLFQEVKNQVFS 300

Query: 296 KDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355
           KDLYY+IS+F   I TLRSR +DIPWL  FFL+ FC +N ++QI++S+KALS+LT Y W 
Sbjct: 301 KDLYYKISIFSCKIPTLRSRQDDIPWLARFFLKRFCLENNVQQINLSEKALSMLTHYKWT 360

Query: 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACT----CYTE---- 407
           DNVQEL+NI+LR+V+G+KDS++TED F  LL   G +E+E ++ T+ T    C  +    
Sbjct: 361 DNVQELENIILRSVVGIKDSYITEDCFTSLLFEAGNQEKEINSNTSETFDIYCMQDENNN 420

Query: 408 -GKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRS 466
             +SS+ +  ++S+ +I +I + GE+RRLSDIEKE+I LAMKLYR QMSEVARRLGIGRS
Sbjct: 421 IPQSSNYL--SISKGTIFSIDKYGEIRRLSDIEKEMIRLAMKLYREQMSEVARRLGIGRS 478

Query: 467 TLYRKIREYNIEVDSL 482
           TLYRKI+EYNIEVD+L
Sbjct: 479 TLYRKIKEYNIEVDTL 494

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 282/504 (55%), Gaps = 35/504 (6%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIVN--VSDLSTISK--IQVNVIFLSLINCEDDKE 68
           +L+ID D  Q +++ + +E  G+   + +   S L  + +    +NVI L L+  E +  
Sbjct: 5   ILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELLERKGGMINVILLDLLMPEMNGH 64

Query: 69  NILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL---- 124
             L+ + ++    P+IVQT Q  I+ +   +      F +  VS ++L  +I  AL    
Sbjct: 65  GFLEALAERGIDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIAIGNALKMAS 124

Query: 125 REGVVPSQENEHCA---LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
           R+G V +           D +++ SPAMI+V+DLAR+A    IP++++GE GVGK+ ++R
Sbjct: 125 RDGRVKTARRPRGGAIGFDDIVSASPAMIRVLDLARRAAQSNIPVVLEGESGVGKEMVAR 184

Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLE 240
            I  +  RA  PF  VNCG I  + +E  LFG +    T  + +  GKF++A+GGT+ L+
Sbjct: 185 AIQAASDRASKPFVTVNCGAIPHNLVESILFGHEKGAFTGATEKHSGKFVDADGGTLFLD 244

Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
           E   LPL VQ ++   ++ G+IE   +R   R++VRLI  T K+L+ +V+   FR+DLYY
Sbjct: 245 EIGDLPLEVQVKLLRAVQQGEIETVGARQPQRVNVRLISATNKDLINEVREGRFREDLYY 304

Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQ 359
           R++VF I I  LR R EDIP LV  F++ F  +  + Q +++S  A++LLT Y W  N++
Sbjct: 305 RLNVFPITIPALRRRKEDIPVLVRAFVERFTAEQRLNQPVTVSSGAMALLTAYDWPGNIR 364

Query: 360 ELKNILLRAVIGLKDSHLT----------------EDRFVLLLSREGKKEREFHTETACT 403
           +L+N + RAV+  +   LT                 DR        G + R     TA  
Sbjct: 365 QLENAIFRAVVLAEGGELTVKDFPQIATQIPGYVVADRSGFSWGEAGPERRPPAGATATV 424

Query: 404 CYTE------GKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEV 457
             +        +    + +  S+ +I ++ + GEVR+L+++E+E+I  A+K YR QMS+V
Sbjct: 425 LPSRPDIPERSEPFGPVPEGRSENAIASVDEGGEVRKLAEVEEELIRFALKFYRGQMSQV 484

Query: 458 ARRLGIGRSTLYRKIREYNIEVDS 481
           AR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 485 ARKLGIGRSTLYRKLKDYGIDPDN 508

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 286/505 (56%), Gaps = 38/505 (7%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQ-----VNVIFLSLINCEDDK 67
           +L+ID D  Q +++ + +E  G+   + + +  S +  +Q     +NVI L L+  E + 
Sbjct: 5   ILVIDDDPVQRRLLTNMIERLGHVAHLAD-NGRSGLELLQRKGGIINVILLDLLMPEMNG 63

Query: 68  ENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLC----DSIICA 123
             +L+ + ++   +P+IVQT Q  I+ +   +      F +  VS ++L     +++  A
Sbjct: 64  HGLLEALAERGIDIPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMA 123

Query: 124 LREGVVPSQENEH---CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180
            R+G V +           D +++ SPAMI+V+DLAR+A    IPI+++GE GVGK+ ++
Sbjct: 124 SRDGKVKTARRPRGGAVGFDDIVSASPAMIRVIDLARRAAQSNIPIVLEGESGVGKEMVA 183

Query: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVL 239
           R I  +  RA  PF  VNCG I  + +E  LFG +    T  S +  GKF++A+GGT+ L
Sbjct: 184 RAIQAASDRAAKPFVTVNCGAIPHNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLFL 243

Query: 240 EEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLY 299
           +E   LPL VQ ++   ++ G+IE   +R   +++VRLI  T K+L+ +V+   FR+DLY
Sbjct: 244 DEIGDLPLDVQVKLLRAVQQGEIETIGARQPQKVNVRLISATNKDLITEVREGRFREDLY 303

Query: 300 YRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNV 358
           YR++VF I I  LR R EDIP LV  F++ F  +  + Q +++S  A++LLT Y W  N+
Sbjct: 304 YRLNVFPITIPALRRRKEDIPVLVRAFVERFSAEQRLDQRLTVSSGAMALLTSYDWPGNI 363

Query: 359 QELKNILLRAVIGLKDSH-----------------LTEDRFVLLLSREGKKEREFHTETA 401
           ++L+N + RAV+ L D H                 +  DR  L     G + R    + A
Sbjct: 364 RQLENAIFRAVV-LADGHELTVRDFPQVATQIPGYIVADRSGLSWGEAGPERRPASGQLA 422

Query: 402 CTCYT-----EGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456
                     +   S+   +   + +I ++ + GEVR+L+++E+E+I  A+K YR QMS+
Sbjct: 423 AAQADAGAREQPAHSEQTPEGRLENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQ 482

Query: 457 VARRLGIGRSTLYRKIREYNIEVDS 481
           VAR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 483 VARKLGIGRSTLYRKLKDYGIDPDN 507

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/505 (35%), Positives = 292/505 (57%), Gaps = 44/505 (8%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAMI+V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRAGSVGFDDIVSASPAMIRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G+R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGERSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNSGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTE----------------DRFVLLLSREGKKEREFHT 398
             N+++L+N + RAV+  +   LTE                D   L+    G +  E ++
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYEVVDHLALVADNTGLEPDEAYS 427

Query: 399 ET--ACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456
           E   A T +   + S+T     S+ +I ++   G+VR+L+D+E+E+I  A+K YR QMS+
Sbjct: 428 EEYRAPTEFHHHRLSET-----SENAIASVNPSGDVRKLADVEEELIRFALKFYRGQMSQ 482

Query: 457 VARRLGIGRSTLYRKIREYNIEVDS 481
           VAR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 483 VARKLGIGRSTLYRKLKDYGIDPDN 507

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/503 (34%), Positives = 282/503 (56%), Gaps = 36/503 (7%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQ-----VNVIFLSLINCEDDK 67
           +L+ID D  Q +++ + +E  G+   + + +  S +  +Q     +NVI L L+    + 
Sbjct: 43  ILVIDDDPVQRRLLTNMIERLGHVAHLAD-NGRSGLELMQRKGGIINVILLDLLMPGMNG 101

Query: 68  ENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLC----DSIICA 123
            + L+ + ++    P+IVQT Q  I+ +   +      F +  VS ++L     +++  A
Sbjct: 102 HSFLEALAERGVDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMA 161

Query: 124 LREGVVPSQENEH---CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180
            R+G V +           D +++ SPAMI+V+DLAR+A    IP++++GE GVGK+ ++
Sbjct: 162 SRDGKVKTARRPRGGSVGFDDIVSASPAMIRVIDLARRAAQSNIPVVLEGESGVGKEMVA 221

Query: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVL 239
           R I  +  RA  PF  VNCG I  + +E  LFG +    T  S +  GKF++A+GGT+ L
Sbjct: 222 RAIQAASDRATKPFVTVNCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLFL 281

Query: 240 EEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLY 299
           +E   LPL VQ ++   ++ G+IE   +R   +++VRLI  T K+L+ +V+   FR+DLY
Sbjct: 282 DEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFREDLY 341

Query: 300 YRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNV 358
           YR++VF I I  LR R EDIP LV  F++ F  +  + Q +++S+ A++LLT Y W  N+
Sbjct: 342 YRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNGAMALLTSYDWPGNI 401

Query: 359 QELKNILLRAVIGLKDSH-----------------LTEDRFVLLLSREGKKEREFHTETA 401
           ++L+N + RAV+ L + H                 +  DR  L     G + R      A
Sbjct: 402 RQLENAIFRAVV-LAEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRPA 460

Query: 402 CTCYTEGKSSDTILDNLSQE---SIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVA 458
                 G       D   +    +I ++ + GEVR+L+++E+E+I  A+K YR QMS+VA
Sbjct: 461 AVTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVA 520

Query: 459 RRLGIGRSTLYRKIREYNIEVDS 481
           R+LGIGRSTLYRK+++Y I+ D+
Sbjct: 521 RKLGIGRSTLYRKLKDYGIDPDN 543

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 287/503 (57%), Gaps = 39/503 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGDRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F + F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFAERFSSEQKNG-RRMTVNAGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI 414
             N+++L+N + RAV+  +   LTE  F  + ++    E E     A      G   D  
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEGDFPQIAAQ--LPEYEVVDHLALVADNTGLDPDDS 425

Query: 415 ----------------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVA 458
                           L  +S+ +I ++   G+VRRL+D+E+E+I  A+K YR QMS+VA
Sbjct: 426 YGEEFRASISGEVHHRLSEVSENAIASVNPAGDVRRLADVEEELIRFALKFYRGQMSQVA 485

Query: 459 RRLGIGRSTLYRKIREYNIEVDS 481
           R+LGIGRSTLYRK+++Y I+ D+
Sbjct: 486 RKLGIGRSTLYRKLKDYGIDPDN 508

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 286/502 (56%), Gaps = 38/502 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G+R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGERSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNSGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI 414
             N+++L+N + RAV+  +   LTE  F  + ++    E E     A      G  +D  
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQ--LPEYEVVDHLALVADNTGLDADEA 425

Query: 415 ---------------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVAR 459
                          L   S  +I ++   G+VR+L+D+E+E+I  A+K YR QMS+VAR
Sbjct: 426 YSEEYRAPPEVHHHRLSEASDNAIASVNPSGDVRKLADVEEELIRFALKFYRGQMSQVAR 485

Query: 460 RLGIGRSTLYRKIREYNIEVDS 481
           +LGIGRSTLYRK+++Y I+ D+
Sbjct: 486 KLGIGRSTLYRKLKDYGIDPDN 507

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 284/503 (56%), Gaps = 38/503 (7%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAM++V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGDRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++   L+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNAGTLALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTE----------------DRFVLLLSREGKKEREFHT 398
             N+++L+N + RAV+  +   LTE                D   L+    G      + 
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYDVVDHLALVADNTGLDPDNGYG 427

Query: 399 ETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVA 458
           E      + G+     L   S+ +I ++   G+VR+L+D+E+E+I  A+K YR QMS+VA
Sbjct: 428 EDFRASMS-GEVHHHRLSEASENAIASVNPAGDVRKLADVEEELIRFALKFYRGQMSQVA 486

Query: 459 RRLGIGRSTLYRKIREYNIEVDS 481
           R+LGIGRSTLYRK+++Y I+ D+
Sbjct: 487 RKLGIGRSTLYRKLKDYGIDPDN 509

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 277/493 (56%), Gaps = 39/493 (7%)

Query: 22  QIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCEDDKENILKNI 74
           Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E      L  +
Sbjct: 2   QRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPEMTGLEFLDAL 58

Query: 75  VDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR--EGVVPSQ 132
            +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A++  +  V ++
Sbjct: 59  HEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAMKLDQREVKAR 118

Query: 133 ENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG 187
                       D +++ SPAM++V+DLA++A    IP++++GE GVGK+ ++R I   G
Sbjct: 119 AGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKELVARAIQSGG 178

Query: 188 KRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP 246
            R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGTI L+E   LP
Sbjct: 179 DRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGTIFLDEIGDLP 238

Query: 247 LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL 306
           L VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+DLYYR++VF 
Sbjct: 239 LEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFREDLYYRLNVFP 298

Query: 307 INISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPWIDNVQELKNI 364
           I I  LR R EDIP LV  F   F +  KN  ++++++   L+LLT Y W  N+++L+N 
Sbjct: 299 ITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNAGTLALLTAYDWPGNIRQLENA 357

Query: 365 LLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI---------- 414
           + RAV+  +   LTE  F  + ++    E +     A      G   D            
Sbjct: 358 IFRAVVLAEGPELTEADFPQIAAQ--LPEYDVVDHLALVADNTGLDPDNGYGEDFRASMS 415

Query: 415 ------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTL 468
                 L   S+ +I ++   G+VR+L+D+E+E+I  A+K YR QMS+VAR+LGIGRSTL
Sbjct: 416 GEVHHRLSEASENAIASVNPAGDVRKLADVEEELIRFALKFYRGQMSQVARKLGIGRSTL 475

Query: 469 YRKIREYNIEVDS 481
           YRK+++Y I+ D+
Sbjct: 476 YRKLKDYGIDPDN 488

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 276/503 (54%), Gaps = 35/503 (6%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIV--NVSDLSTISKI--QVNVIFLSLINCEDDKE 68
           VL+ID D  Q +++K+ VE YG+   +     + L  + +   ++NV+ L L+  E D  
Sbjct: 5   VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVVVLDLMMPEMDGL 64

Query: 69  NILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL---- 124
             LK + +    VP+IVQT Q  I  +   +      F +  VS +++  +I  AL    
Sbjct: 65  AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124

Query: 125 REGVVPSQE---NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
           RE    +     +       +++ SPAM++V++LA++A   +IP++++GE GVGK+ ++R
Sbjct: 125 REAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVAR 184

Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLE 240
            I  +G RA  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT+ L+
Sbjct: 185 AIQSAGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLD 244

Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
           E   LPL VQ ++   ++ G+IE   S    +++VRLI  T KNL+ +VK   FR+DLYY
Sbjct: 245 EIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYY 304

Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQ 359
           R++VF I I  LR R EDIP L   F + F  +  +   + +   AL+LLT Y W  N++
Sbjct: 305 RLNVFPITIPALRRRKEDIPHLARVFAERFSVEQKLPNPVGLDASALALLTAYDWPGNIR 364

Query: 360 ELKNILLRAVIGLKDSHLTEDRF---VLLLSREGKKEREFHTETACTCYT---------- 406
           +L+N + RAV+  +   L +  F    L L     ++    +  + +  +          
Sbjct: 365 QLENAVFRAVVLSQGEELADSDFPQIALQLPEFAGRDDAGESIRSPSGSSLKLAAYSPPP 424

Query: 407 EGKSSDTILDNLSQES---------IPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEV 457
               S  ILD  S  S         I ++   G +R+L++IE+E+I  A++ YR QMS+V
Sbjct: 425 PAAESHAILDEASDISTTIYRGGNLISSMDDSGNIRKLAEIEEELIRFALRFYRGQMSQV 484

Query: 458 ARRLGIGRSTLYRKIREYNIEVD 480
           AR+LGIGRSTLYRK+++Y I+ D
Sbjct: 485 ARKLGIGRSTLYRKLKDYGIDPD 507

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  213 bits (544), Expect = 9e-56
 Identities = 110/343 (32%), Positives = 169/343 (49%), Gaps = 29/343 (8%)

Query: 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198
            D +I  SPAM++V++LA++       ++I GE G GK+  +R IH    RA  PF  +N
Sbjct: 244 FDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAIN 303

Query: 199 CGMIDQDKIEKFLFGDVD---LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYN 255
           C  I +  +E  LFG             +  G F  ANGGT+ L+E   +PL +Q ++  
Sbjct: 304 CAAIPETLLESELFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLR 362

Query: 256 FIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR 315
            ++  +IE       I +DVR+I  T +NL   +    FR+DLYYR++V  I I  LR R
Sbjct: 363 VLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRER 422

Query: 316 SEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDS 375
            EDIP L  +FL  F  +       +S  AL+LL +Y W  NV+EL+N++ RAV  ++  
Sbjct: 423 KEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESD 482

Query: 376 HLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL 435
            L +   +   + E K+ R                          E+   I        L
Sbjct: 483 GLIDADDLPAFALEEKEPR-------------------------PETTKQIEVGSLKEAL 517

Query: 436 SDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478
            + EK +I  A++ +    S+ A+ LGI R+TLYRK+++Y + 
Sbjct: 518 EEYEKHLIREALERHGGNKSKAAKELGISRTTLYRKLKKYGLR 560

Length = 560

 Score =  204 bits (519), Expect = 7e-53
 Identities = 109/353 (30%), Positives = 173/353 (49%), Gaps = 17/353 (4%)

Query: 131 SQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRA 190
                   +  +I  SPAM Q++            ++I+GE G GK+ ++R IH+   R 
Sbjct: 214 QLSEVVLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273

Query: 191 FFPFFIVNCGMIDQDKIEKFLFGDVDLQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAV 249
             PF  +NC  + +  +E  LFG      T       G+F  A+GGT+ L+E   LPLA+
Sbjct: 274 DKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLAL 333

Query: 250 QGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINI 309
           Q ++   ++ G+IE       I++DVR+I  T ++L   V+   FR DLYYR+SVF + +
Sbjct: 334 QAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLEL 393

Query: 310 STLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369
             LR R EDIP L  +FL+ F  +     +S+S +AL LL+ Y W  NV+EL+N++ RAV
Sbjct: 394 PPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAV 453

Query: 370 IGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQD 429
             L    LT    +  L             +A    T      +    L + ++P  G+ 
Sbjct: 454 --LLAGRLTRRGDLCTLELSL---------SALLWKTLPAPEPS---ALPEPALP--GEH 497

Query: 430 GEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVDSL 482
                  + E+++I  A++      +  ARRLG+ R TL  +++   I+V  L
Sbjct: 498 TLREATEEFERQLIIAALEETNGNWAGAARRLGLTRRTLLYRMKRLGIKVKKL 550

Length = 550

 Score =  179 bits (455), Expect = 2e-45
 Identities = 110/350 (31%), Positives = 169/350 (48%), Gaps = 50/350 (14%)

Query: 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198
            D +   SP M +++   R+A   + P+++ GE GVGK  L++ IH   +RA  P+  VN
Sbjct: 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVN 383

Query: 199 CGMIDQDKI-EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFI 257
           C +   + + E+FL  D    T +    L KF  A+GGT+ LE+ + L   +Q  +   +
Sbjct: 384 CQLYPDEALAEEFLGSDR---TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVL 440

Query: 258 ETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSE 317
           +TG I   DSR  I +DVR+I  T  +L   V+ + F + LYY +  F I I  LR R E
Sbjct: 441 KTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRE 500

Query: 318 DIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA-------VI 370
           DIP LV+  L+S   K    ++ I D AL+ L  Y W  N  EL++++           I
Sbjct: 501 DIPALVNNKLRSL-EKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRI 559

Query: 371 GLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTIL-DNLSQESIPAIGQD 429
            L D  L E    L   +                      S T L  +LS          
Sbjct: 560 RLSD--LPEH---LFTEQAT-----------------DDVSATRLSTSLS---------- 587

Query: 430 GEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEV 479
                L+++EKE I  A ++   ++ E+A  LGIGR+TL+RK++++ I+ 
Sbjct: 588 -----LAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGIDA 632

Length = 638

 Score =  172 bits (436), Expect = 3e-43
 Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 50/325 (15%)

Query: 155 LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214
            A +     +P+++QGE G GK+ L+R IH++ + A  PF  VNC  I +  IE  LFG 
Sbjct: 328 KAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAG-PFVAVNCAAIPEALIESELFGY 386

Query: 215 VDLQTKNSAQ--FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIR 272
           V      + +  + GK  +A+GGT+ L+E   +PLA+Q R+   ++ G +        I+
Sbjct: 387 VAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGT-RIK 445

Query: 273 LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT 332
           +D+R+I  T ++L   V+   FR+DLYYR++ F+I +  LR RS+ IP L     +    
Sbjct: 446 VDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRE--- 502

Query: 333 KNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKK 392
                ++ + D AL+ L  Y W  N++EL N++ R         L++   + +       
Sbjct: 503 --NDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAA------LSDGGRIRV------- 547

Query: 393 EREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRA 452
                                +   L +E               DIEK  +  A++    
Sbjct: 548 -------------------SDLPPELLEEQATPRE---------DIEKAALLAALQATNG 579

Query: 453 QMSEVARRLGIGRSTLYRKIREYNI 477
            +SE AR LGI RSTLYRK++ + I
Sbjct: 580 NISEAARLLGISRSTLYRKLKRHGI 604

Length = 606

 Score =  169 bits (429), Expect = 2e-42
 Identities = 98/352 (27%), Positives = 167/352 (47%), Gaps = 42/352 (11%)

Query: 129 VPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188
           V +Q+      + ++AVSP M  VV+ A+K      P++I GE G GK  L++  H +  
Sbjct: 195 VAAQDVS--GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASP 252

Query: 189 RAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLA 248
           R   PF  +NC  + +D  E  LFG             G F +ANGGT++L+E   +   
Sbjct: 253 RHSKPFLALNCASLPEDAAESELFG----HAPGDEGKKGFFEQANGGTVLLDEIGEMSPR 308

Query: 249 VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308
           +Q ++  F+  G          + +DVR+I  T+ NL+  V+   FR+DL+YR++V  +N
Sbjct: 309 LQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLN 368

Query: 309 ISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368
           +  LR R +DI  L   F+Q F  +  + +  ++   L++LT+Y W  NV++LKN + RA
Sbjct: 369 LPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRA 428

Query: 369 VIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQ 428
           +  L+   L  +  +L                                    ++   +G+
Sbjct: 429 LTLLEGYELRIEDILLPD---------------------------------YDAATVVGE 455

Query: 429 DGEVRRLSDIEKEI-IGLAMKLYRAQMS--EVARRLGIGRSTLYRKIREYNI 477
           D     L +I       +  +LYR+  S  ++A+RLG+  + +  K+R+Y I
Sbjct: 456 DALEGSLDEIVSRFERSVLTRLYRSYPSTRKLAKRLGVSHTAIANKLRQYGI 507

Length = 511

 Score =  163 bits (415), Expect = 9e-41
 Identities = 112/363 (30%), Positives = 170/363 (46%), Gaps = 16/363 (4%)

Query: 123 ALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRF 182
            LR+             D +I  SPAM QVVD AR        ++++GE G GK+ +++ 
Sbjct: 179 QLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKA 238

Query: 183 IHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEE 241
           IH    RA  PF  VNC  + +  +E  LFG +    T   AQ  G+F  A+GGT+ L+E
Sbjct: 239 IHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298

Query: 242 PDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYR 301
              +  A Q ++   ++ G+ E       +++DVRL+  T ++L   V    FR DLYYR
Sbjct: 299 IGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYR 358

Query: 302 ISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQEL 361
           I+V  I +  LR R EDIP L   FL+ F  +N  + ++I+  A+ +L    W  NV+EL
Sbjct: 359 INVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-RPLTITPSAIRVLMSCKWPGNVREL 417

Query: 362 KNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQE 421
           +N L R     +   +T   F        +  +      A TC     S D +       
Sbjct: 418 ENCLERTATLSRSGTITRSDFSC------QSGQCLSPMLAKTCPHGHISIDPLAGTTPPH 471

Query: 422 SIPAIGQDGEVR----RLSDIEKEIIGLAMKLYRAQMSEVARRLGIG-RSTLYRKIREYN 476
           S  +    GE       LS+ E+ I   A++      ++ AR LG+  R   Y  +R+ N
Sbjct: 472 SPASAALPGEPGLSGPTLSERERLI--AALEQAGWVQAKAARLLGMTPRQVGYA-LRKLN 528

Query: 477 IEV 479
           IE+
Sbjct: 529 IEM 531

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. Length = 534

 Score =  162 bits (411), Expect = 2e-40
 Identities = 104/341 (30%), Positives = 157/341 (46%), Gaps = 34/341 (9%)

Query: 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197
           AL  LI  SP M ++     K     I +++ GE G GK+ L+R +H+   R    F  +
Sbjct: 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAI 196

Query: 198 NCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNF 256
           NC  I ++ +E  LFG +    T    Q LGK   A+GGT+ L+E   LPL +Q ++  F
Sbjct: 197 NCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRF 256

Query: 257 IETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRS 316
           ++   IE    R  I +DVR++  T ++L   +    FR+DL+YRI+   I I  LRSR 
Sbjct: 257 LQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRD 316

Query: 317 EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH 376
            D   L + FL+ F  +   K    +D AL  L  + W  NV+EL+N + RAVI  + + 
Sbjct: 317 GDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQ 376

Query: 377 LTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLS 436
           +T +                               D  LD   +   P      EVR   
Sbjct: 377 ITAE-------------------------------DLGLDARERAETPLEVNLREVR--E 403

Query: 437 DIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477
             E+E +  A+      ++  A  LGI R TLY  ++++ I
Sbjct: 404 RAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). Length = 445

 Score =  158 bits (401), Expect = 2e-39
 Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 25/344 (7%)

Query: 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH-ESGKRAFFPFFI 196
           ALD LI  SP++ ++ +  +      +P++I GE G GK+  +R IH  S +RA  PF  
Sbjct: 76  ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIA 135

Query: 197 VNCGMIDQDKIEKFLFGDVD--LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIY 254
            NC    ++  E  LFG            +  G F +ANGGT+ L+E   LP   Q ++ 
Sbjct: 136 FNCAAYSENLQEAELFGHEKGAFTGAQGGKA-GLFEQANGGTLFLDEIHRLPPEGQEKLL 194

Query: 255 NFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK-DLYYRISVFLINISTLR 313
             +E G+           +DVRLI  T ++L    +  V    DL  R+++  I +  LR
Sbjct: 195 RVLEEGEYRRVGGSQPRPVDVRLICATTEDL----EEAVLAGADLTRRLNILTITLPPLR 250

Query: 314 SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373
            R EDI  L   FL+S   +  +     S +AL  L  Y W  N++ELKN++ RAV    
Sbjct: 251 ERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310

Query: 374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVR 433
                 +  ++ +  +                     +D       Q ++P +       
Sbjct: 311 GEGQDLEDLIISIRLDELP----------------GLNDVPAGISLQLNLPELPLSLRET 354

Query: 434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477
            L  +E+ ++  A++  +    + AR LGI R TL  ++++Y +
Sbjct: 355 SLEQVEERLLQKALEQNKGNKKKAARLLGISRKTLRYRLKKYGL 398

Length = 403

 Score =  158 bits (402), Expect = 3e-39
 Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 41/350 (11%)

Query: 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFP 193
           N+  A   ++AVSP M QVV+ ARK      P++I G+ G GK  L+   H    R   P
Sbjct: 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKP 257

Query: 194 FFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGK---FIEANGGTIVLEEPDALPLAVQ 250
           F  +NC  I  D +E  LFG       N+ +  GK   F +ANGG+++L+E   +   +Q
Sbjct: 258 FLALNCASIPDDVVESELFGHAPGAYPNALE--GKKGFFEQANGGSVLLDEIGEMSPRMQ 315

Query: 251 GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINIS 310
            ++  F+  G          + +DVR+I  T+KNL+  V+   FR+DLYYR++V  +N+ 
Sbjct: 316 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375

Query: 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI 370
            LR R +DI  L   F+  F  +  + +  ++    ++LT+Y W  NV++LKN + RA+ 
Sbjct: 376 PLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435

Query: 371 GLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDG 430
            L+   L     +L          ++    A          +  ++              
Sbjct: 436 QLEGYELRPQDILL---------PDYDAAVA--------VGEDAMEG------------- 465

Query: 431 EVRRLSDIEKEI-IGLAMKLYRAQMS--EVARRLGIGRSTLYRKIREYNI 477
               L +I       +  +LYR   S  ++A+RLG+  + +  K+REY +
Sbjct: 466 ---SLDEITSRFERSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 512

Length = 520

 Score =  141 bits (357), Expect = 4e-34
 Identities = 89/346 (25%), Positives = 153/346 (44%), Gaps = 42/346 (12%)

Query: 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198
           LD L+  S  M QV  L R        ++I GE G GK+ +++ IH+   R  FPF  +N
Sbjct: 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAIN 270

Query: 199 CGMIDQDKIEKFLFGDVDLQTKNSAQ--FLGKFIEANGGTIVLEEPDALPLAVQGRIYNF 256
           CG I +  +E  LFG  +     + +    G    A+ GT+ L+E   +PL +Q R+   
Sbjct: 271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRV 330

Query: 257 IETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRS 316
           +E  ++        + +DVR++  T   L   V+   FR+DL+YR+S+  I +  LR R 
Sbjct: 331 LEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERP 390

Query: 317 EDI-PWLVHFFLQSFC------TKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369
            DI P    + +Q+        ++ A + ++     L    +YPW  NV+EL+N++ R  
Sbjct: 391 GDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQ---RYPWPGNVRELRNLVERLA 447

Query: 370 IGLK--DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIG 427
           + L    +       +  L+ E                            L++ S     
Sbjct: 448 LELSAMPAGALTPDVLRALAPE----------------------------LAEASGKGKT 479

Query: 428 QDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIR 473
               +R  S +E   +  A++ +       A+ LGI R+TL+R+++
Sbjct: 480 SALSLRERSRVEALAVRAALERFGGDRDAAAKALGISRTTLWRRLK 525

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. Length = 526

 Score =  131 bits (332), Expect = 4e-31
 Identities = 98/356 (27%), Positives = 175/356 (49%), Gaps = 45/356 (12%)

Query: 130 PSQENEHCALDS--LIAVSPAM------IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
            ++     AL    +I  SPAM      I+VV          + ++I GE GVGK+ ++R
Sbjct: 175 VAEFLRQEALKEGEMIGQSPAMQQLKKEIEVV------AASDLNVLILGETGVGKELVAR 228

Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTK------NSAQFLGKFIEANGG 235
            IH +  RA  P   +NC  + +   E  LFG V    K       S +  GKF  A+GG
Sbjct: 229 AIHAASPRADKPLVYLNCAALPESLAESELFGHV----KGAFTGAISNR-SGKFELADGG 283

Query: 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295
           T+ L+E   LPLA+Q ++   ++ G+I+   S  ++R+DVR+I  T ++L  +V++  FR
Sbjct: 284 TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFR 343

Query: 296 KDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355
            DLY+R+SVF +++  LR R +D+  L  +FL+    +  ++ + +S  A + L  Y W 
Sbjct: 344 ADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403

Query: 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTIL 415
            NV+EL++++ RA +  +         ++ L  +       H +           ++  L
Sbjct: 404 GNVRELEHVISRAALLARARG---AGRIVTLEAQ-------HLDLP---------AEVAL 444

Query: 416 DNLSQESIPAIGQDGEVRRLSDI-EKEIIGLAMKLYRAQMSEVARRLGIGRSTLYR 470
                 + PA      +R  ++  ++++I  A+  ++   +  AR L + R+ L+R
Sbjct: 445 PPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHR 500

Length = 509

 Score =  116 bits (293), Expect = 1e-26
 Identities = 93/358 (25%), Positives = 152/358 (42%), Gaps = 64/358 (17%)

Query: 139 LDSLIAVSPAMIQVVDL----ARKAGDCAIPIMIQGEFGVGKKRLSRFIH---------E 185
           L  L+  SP M QV       AR +      ++IQGE G GK+  ++ IH          
Sbjct: 218 LGDLLGQSPQMEQVRQTILLYARSSAA----VLIQGETGTGKELAAQAIHREYFARHDAR 273

Query: 186 SGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ--FLGKFIEANGGTIVLEEPD 243
            GK++  PF  VNCG I +  +E  LFG  +     S +    G F  A+GGT+ L+E  
Sbjct: 274 QGKKSH-PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 332

Query: 244 ALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS 303
            +PL +Q R+   +E  ++        + +DVR+I  T  +L   V+   FR+DL+YR+S
Sbjct: 333 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS 392

Query: 304 VFLINISTLRSRSEDIPWL-VHFFLQSFC------TKNAIKQISISDKALSLLTKYPWID 356
           +  + +  LR R  DI  L   F  QS        +    + +    +  +LL  Y W  
Sbjct: 393 ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQ---QCETLLLHYDWPG 449

Query: 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILD 416
           NV+EL+N++              +R  L LS E                        +  
Sbjct: 450 NVRELRNLM--------------ERLALFLSVEPT--------------------PDLTP 475

Query: 417 NLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474
              Q  +P + ++        +    +  A++ +    +  A  LGI R+TL+R+++ 
Sbjct: 476 QFLQLLLPELARESAKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533

Length = 538

 Score =  171 bits (435), Expect = 3e-43
 Identities = 131/466 (28%), Positives = 219/466 (46%), Gaps = 40/466 (8%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSLIN---CEDDKEN 69
           +L++D D     I++  +  +GY+V + N S    + +++  V  L L +    E D   
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALAN-SGRQALEQVREQVFDLVLCDVRMAEMDGIA 66

Query: 70  ILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129
            LK I    P +P+++ T   +++     L      + +  +    L  ++  AL     
Sbjct: 67  TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126

Query: 130 PSQE--NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG 187
              E      +   ++  SPAM  ++            ++I G+ G GK+ ++R IH S 
Sbjct: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186

Query: 188 KRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP 246
            R+  P   +NC  +++  +E  LFG +    T    +  G+F+EA+GGT+ L+E   + 
Sbjct: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246

Query: 247 LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL 306
             +Q R+   I+  +++   S   I +DVRLI  T ++L  +V +  FR+DLYYR++V  
Sbjct: 247 PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306

Query: 307 INISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILL 366
           I + +LR R EDIP L   FLQ F  +N       + +A+ LL  Y W  N++EL+N + 
Sbjct: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366

Query: 367 RAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAI 426
           RAV+              LL+ E   ERE     A T                   IP  
Sbjct: 367 RAVV--------------LLTGEYISERELPLAIAST------------------PIPL- 393

Query: 427 GQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKI 472
           GQ  +++ L ++EKE+I  A++      +E AR+LGI R TL  K+
Sbjct: 394 GQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439

Length = 441

 Score =  158 bits (402), Expect = 3e-39
 Identities = 129/478 (26%), Positives = 228/478 (47%), Gaps = 32/478 (6%)

Query: 13  VLIIDKDDEQIK-IIKDHVESYGYDV--FIVNVSDLSTISKIQVNVIFLSLINCEDDKEN 69
           V ++D DD  I+ +++  +   GY+V  F    S L  +++ Q +++   +    +D  +
Sbjct: 1   VWVVD-DDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLD 59

Query: 70  ILKNIVDKIPIVPIIVQTTQ-DNIKILNCF---LYNRISKFF-----LNLVSRKQLCDSI 120
           +L  I  + P +P+IV T   D    +  +    +  + K F     + LV R     ++
Sbjct: 60  LLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVER-----AL 114

Query: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVD-LARKAGDCAIPIMIQGEFGVGKKRL 179
             A  +  +P+   E      LI  +PAM +V   + R +    I ++I GE G GK+ +
Sbjct: 115 AHAQEQVALPADAGEAEDSAELIGEAPAMQEVFRAIGRLSRS-DITVLINGESGTGKELV 173

Query: 180 SRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIV 238
           +R +H    RA  PF  +N   I +D IE  LFG +    T  + +  G+F +A+GGT+ 
Sbjct: 174 ARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLF 233

Query: 239 LEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           L+E   +PL  Q R+   +  G  EF+    R  I++DVR++  T +NL   V+   FR+
Sbjct: 234 LDEIGDMPLDAQTRLLRVLADG--EFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFRE 291

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356
           DL++R++V  I++  LR R EDIP L   FL     +  ++   +  +AL  L +  W  
Sbjct: 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG 351

Query: 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILD 416
           NV++L+N+     +      +        L+  G+      ++          S D  L+
Sbjct: 352 NVRQLENLCRWLTVMASGDEVLVSDLPAELALTGRPASAPDSDG-------QDSWDEALE 404

Query: 417 NLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474
             +++++    Q    R L + E+ ++  A++  R    E A  LG GR+TL RK++E
Sbjct: 405 AWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKE 462

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. Length = 463

 Score =  157 bits (398), Expect = 7e-39
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 61/490 (12%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVN--VSDLSTISKIQVNVIFLSLINCEDDKEN 69
           R+LI+D +D   +++       G++    N   + L   + I  +V+ + +   E D   
Sbjct: 6   RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65

Query: 70  ILKNIVDKIPIVPIIVQTT----QDNIKILNCFLYNRISKFF----LNLVSRKQL----C 117
            LK +       P+I+ T     +  ++ L C  ++ + K F    LNL+ ++ L     
Sbjct: 66  ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125

Query: 118 DSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
              I  L + +  S +  H     ++  SPAM+ +     K       ++I GE G GK+
Sbjct: 126 KKEIRHLHQALSTSWQWGH-----ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKE 180

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R IH + +RA  PF  VNC  + +  +E  LFG +    T       G F  AN GT
Sbjct: 181 LIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           ++L+E   +PL +Q ++   ++  + E       I++D+R+I  T ++L   VK   FR+
Sbjct: 241 LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE 300

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356
           DL+YR++V  + +  LR R EDI  L + FLQ F ++N    I I   A+SLLT + W  
Sbjct: 301 DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPG 360

Query: 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILD 416
           N++EL N++ RAV+                             +    +     S+ +  
Sbjct: 361 NIRELSNVIERAVV---------------------------MNSGPIIF-----SEDLPP 388

Query: 417 NLSQESIPAIG----QDGEVRRL----SDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTL 468
            + Q    A        GE R L      +EK II   ++      +  A  LGI R  L
Sbjct: 389 QIRQPVCNAGEVKTAPVGE-RNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRAL 447

Query: 469 YRKIREYNIE 478
             K++EY I+
Sbjct: 448 MYKLQEYGID 457

Length = 457

 Score =  274 bits (702), Expect = 4e-74
 Identities = 136/482 (28%), Positives = 230/482 (47%), Gaps = 37/482 (7%)

Query: 11  KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSD--LSTISKIQVNVIFLSLINCEDDKE 68
            R+L++D D +  ++++  +E  GY+V     ++  L  +S+   +++ L +     D  
Sbjct: 5   ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGL 64

Query: 69  NILKNIVDKIPIVPIIVQTTQDNIKI----LNCFLYNRISKFF----LNLVSRKQLCDSI 120
            +LK I  + P +P+IV T   +I      L    ++ + K F    L  +  + L    
Sbjct: 65  ELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL---E 121

Query: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180
           +  L+     S +        L+  SPAM Q+  L  K       ++I GE G GK+ ++
Sbjct: 122 LRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVA 181

Query: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGTIVL 239
           R IH++  RA  PF  VNC  I ++ +E  LFG      T    + +G+F +ANGGT+ L
Sbjct: 182 RAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFL 241

Query: 240 EEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLY 299
           +E   +PL +Q ++   ++  + E       I++DVR+I  T ++L  +V +  FR+DLY
Sbjct: 242 DEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLY 301

Query: 300 YRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ 359
           YR++V  + +  LR R EDIP L   FL+ F  +        S +AL+ L  Y W  NV+
Sbjct: 302 YRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVR 361

Query: 360 ELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLS 419
           EL+N++ RAVI  +   +  +   L +                        +   L   +
Sbjct: 362 ELENVVERAVILSEGPEIEVEDLPLEIL---------------------APAAEALAGPA 400

Query: 420 QESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEV 479
            E+            L+++E+++I  A++      SE A RLGI R TLYRK++EY I+ 
Sbjct: 401 GEAALPG--LPLGEALAEVERQLILQALERTGGNKSEAAERLGISRKTLYRKLKEYGIDR 458

Query: 480 DS 481
             
Sbjct: 459 SD 460

Length = 464

 Score =  155 bits (394), Expect = 2e-38
 Identities = 115/428 (26%), Positives = 200/428 (46%), Gaps = 34/428 (7%)

Query: 66  DKENILKNIVDKIPIVPIIVQTTQDNIKI-LNCF---LYNRISKFF-----LNLVSRKQL 116
           D   +LK I  + P++P+I+ T   ++   ++ +    ++ + K F     + LV R   
Sbjct: 61  DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA-- 118

Query: 117 CDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGK 176
               I   +E   P     +     +I  +PAM  V  +  +    +I ++I GE G GK
Sbjct: 119 ----ISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGK 174

Query: 177 KRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFIEANGG 235
           + ++  +H    RA  PF  +N   I +D IE  LFG        +     G+F +A+GG
Sbjct: 175 ELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234

Query: 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295
           T+ L+E   +PL VQ R+   +  G+         +++DVR+I  T +NL  +V+   FR
Sbjct: 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFR 294

Query: 296 KDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355
           +DL++R++V  +++  LR R EDIP L   FLQ    +  ++   +  +  + LT+  W 
Sbjct: 295 EDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354

Query: 356 DNVQELKNIL-LRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI 414
            NV++L+N      V+      L +D    L             E+     T     D+ 
Sbjct: 355 GNVRQLENTCRWLTVMAAGQEVLIQDLPGELF------------ESTVPESTSQMQPDSW 402

Query: 415 LDNLSQESIPAIGQDGEVRRLSD----IEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYR 470
              L+Q +  A+ + G    LS+    +E+ ++  A++  +    E AR LG GR+TL R
Sbjct: 403 ATLLAQWADRAL-RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461

Query: 471 KIREYNIE 478
           K++E  +E
Sbjct: 462 KLKELGME 469

Length = 469

 Score =  124 bits (313), Expect = 5e-29
 Identities = 117/434 (26%), Positives = 185/434 (42%), Gaps = 70/434 (16%)

Query: 58  LSLINCEDD-----KENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVS 112
           L L  CE+         +L+ I +++ I             + N   Y  I +    LV 
Sbjct: 312 LKLAQCEEKVFTTTNLKLLRQIAERVAIA------------VDNALAYQEIHRLKERLVD 359

Query: 113 RKQLCDSIICALREGV--VPSQENEHCALDSLIAVSPAMIQV---VDLARKAGDCAIPIM 167
                     AL E +  V S+  E      +I  S AM  V   V++  ++ D  +  +
Sbjct: 360 EN-------LALTEQLNNVDSEFGE------IIGRSEAMYSVLKQVEMVAQS-DSTV--L 403

Query: 168 IQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFL 226
           I GE G GK+ ++R IH    R       +NC  +    +E  LFG +    T  SAQ +
Sbjct: 404 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 463

Query: 227 GKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLL 286
           G+F  A+  ++ L+E   +PL +Q ++   ++  + E   S   I+ DVRLI  T ++L 
Sbjct: 464 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 523

Query: 287 PQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKAL 346
             V    FR DLYYR++VF I++  LR R EDIP LV  F      +      SI  + L
Sbjct: 524 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583

Query: 347 SLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYT 406
             L+   W  NV+EL+N++ RAV               LL+R    +      T     T
Sbjct: 584 RTLSNMEWPGNVRELENVIERAV---------------LLTRGNVLQLSLPDITLPEPET 628

Query: 407 EGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRS 466
              ++           +   G+D E + +  + KE  G+      A     A+RLG+ R+
Sbjct: 629 PPAATV----------VAQEGED-EYQLIVRVLKETNGVV-----AGPKGAAQRLGLKRT 672

Query: 467 TLYRKIREYNIEVD 480
           TL  +++   I+  
Sbjct: 673 TLLSRMKRLGIDKS 686

Length = 686

 Score =  130 bits (331), Expect = 6e-31
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201
           LI  SPAM +V++LA++       ++I GE G GK+  +R IH+   RA  PF  VNC  
Sbjct: 1   LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAA 60

Query: 202 IDQDKIEKFLFGDVDLQTKNS-----AQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNF 256
           I ++ +E  LFG      K +     +   G F  A+GGT+ L+E   LPL +Q ++   
Sbjct: 61  IPEELLESELFGHE----KGAFTGAVSDRKGLFELADGGTLFLDEIGELPLELQAKLLRV 116

Query: 257 IETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI 307
           ++ G+ E       I++DVR+I  T ++L   V    FR+DLYYR++V  I
Sbjct: 117 LQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYRLNVVPI 167

Length = 168

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ 224
            +++ G  G GK  L+R I     R   PF  +N   + +  +   LFG   ++      
Sbjct: 21  NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVR-----L 75

Query: 225 FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284
                 +A  G + ++E D+L    Q  +   +ET      +     R +VR+I  T + 
Sbjct: 76  LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRP 130

Query: 285 LLPQVKSHVFRKDLYYRIS 303
           LL         + LY R+ 
Sbjct: 131 LLGD-----LDRALYDRLD 144

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.. Length = 151

 Score =  127 bits (321), Expect = 6e-30
 Identities = 98/361 (27%), Positives = 172/361 (47%), Gaps = 6/361 (1%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSD--LSTISKIQVNVIFLSLINCEDDKEN 69
            +L++D D   +K++   + S GY V         L  +++ +V+++   L   E D   
Sbjct: 7   HLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQ 66

Query: 70  ILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129
           +   I    P +P+I+ T   +I          +  F    V R  L  +I  AL E   
Sbjct: 67  LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDAL-EQSA 125

Query: 130 PSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR 189
           P+ +       +++  SP M+++++ AR      + ++I G+ G GK+ L++ IH +  R
Sbjct: 126 PATDERWRE--AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR 183

Query: 190 AFFPFFIVNCGMIDQDKIEKFLFGDVDLQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLA 248
           A  PF  +NCG + +  +E  LFG      T   +   G F  A GGT+ L+E   +P  
Sbjct: 184 ASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243

Query: 249 VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308
           +Q ++   ++  K+    S   I +DVR+I  T ++L   +    FR+DLYYR++V  + 
Sbjct: 244 LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303

Query: 309 ISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368
           I  L  R+EDIP L +  L+    ++     + S  A+  L    W  NV++L N++ + 
Sbjct: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363

Query: 369 V 369
           V
Sbjct: 364 V 364

Length = 444

 Score =  112 bits (282), Expect = 2e-25
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201
           LI  S A ++V++   +      P++I GE G GK+ ++  +H   KR   P   +NC  
Sbjct: 1   LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAA 60

Query: 202 IDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETG 260
           + ++ ++  LFG +    T    +  G+F  A+GGT+ L+E     L VQ ++   IE G
Sbjct: 61  LSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYG 120

Query: 261 KIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIP 320
           + E       +++DVRL+  T  +L        FR DL  R++  +I +  LR R EDI 
Sbjct: 121 EFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIM 180

Query: 321 WLVHFFLQSFCTKNAIKQIS-ISDKALSLLTKYPWIDNVQELKNILLRAV 369
            L   F      +  +      + +A   L +Y W  NV+ELKN++ R+V
Sbjct: 181 LLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH. Length = 329

 Score = 95.5 bits (238), Expect = 2e-20
 Identities = 66/248 (26%), Positives = 123/248 (49%), Gaps = 2/248 (0%)

Query: 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198
            D+L+  + + ++V++   +      P++I GE G GK+ ++  +H    R   PF  +N
Sbjct: 5   KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64

Query: 199 CGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFI 257
           C  ++++ ++  LFG +    T    +  G+F  A+GGT+ L+E    P+ VQ ++   I
Sbjct: 65  CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVI 124

Query: 258 ETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSE 317
           E G++E       ++++VRL+  T  +L   V    FR DL  R++  ++ +  LR R  
Sbjct: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQS 184

Query: 318 DIPWLVHFFLQSFCTKNAIKQIS-ISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH 376
           DI  +   F    C +  +      +++A   L  Y W  N++ELKN++ R+V     S 
Sbjct: 185 DIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSE 244

Query: 377 LTEDRFVL 384
              D  ++
Sbjct: 245 YPLDNIII 252

Length = 326

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 13/261 (4%)

Query: 132 QENEHCALDSLIAV-SPAMIQVVD-LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK- 188
           +E     L S IA  +P   ++++ + R A     PI++ G  G GK  L+R I+E  + 
Sbjct: 175 REQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQA 234

Query: 189 RAFF--PFFIVNCGMIDQDKIEKFLFGDVDLQ-TKNSAQFLGKFIEANGGTIVLEEPDAL 245
           R  F   F  VNC  +  D     LFG V    T       G    A+GG + L+E   L
Sbjct: 235 RHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGEL 294

Query: 246 PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVF 305
               Q  +   IE  +   F S   +  D +LI  T ++L   V    FR+DLY RI+++
Sbjct: 295 GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354

Query: 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKA----LSLLT--KYPWIDNVQ 359
              +  LR R EDI   + + L+   +      +  + +A    L+  T  +  W  N +
Sbjct: 355 TFTLPGLRQRQEDIEPNLDYELERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFR 413

Query: 360 ELKNILLRAVIGLKDSHLTED 380
           EL   + R         +T D
Sbjct: 414 ELSASVTRMATLADSGRITLD 434

Length = 531

 Score = 55.1 bits (134), Expect = 4e-08
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475
            L ++EKE+I  A++      S+ AR LGI R TLYRK+++Y
Sbjct: 1   SLEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKKY 42

Length = 42