254780916
putative sigma-54-dependent transcription regulator protein
GeneID in NCBI database: | 8209936 | Locus tag: | CLIBASIA_04075 |
Protein GI in NCBI database: | 254780916 | Protein Accession: | YP_003065329.1 |
Gene range: | +(895380, 896828) | Protein Length: | 482aa |
Gene description: | putative sigma-54-dependent transcription regulator protein | ||
COG prediction: | [T] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | ||
KEGG prediction: | atoC; putative sigma-54-dependent transcription regulator protein | ||
SEED prediction: | two component, sigma54 specific, transcriptional regulator, Fis family | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 482 | putative sigma-54-dependent transcription regulator pro | |||
315122736 | 494 | putative sigma-54-dependent transcription regulator pro | 1 | 1e-157 | |
227823368 | 514 | sigma-54 dependent DNA-binding response regulator [Sino | 1 | 9e-77 | |
15966548 | 513 | putative sigma-54-dependent transcription regulator pro | 1 | 2e-76 | |
86359139 | 513 | sigma-54-dependent transcriptional regulator (activator | 1 | 3e-76 | |
150397881 | 549 | two component sigma54 specific Fis family transcription | 1 | 2e-75 | |
209550871 | 514 | Fis family transcriptional regulator [Rhizobium legumin | 1 | 4e-75 | |
190893375 | 513 | sigma-54-dependent transcriptional regulator (activator | 1 | 1e-74 | |
241206285 | 515 | two component, sigma54 specific, transcriptional regula | 1 | 1e-73 | |
116253805 | 494 | two-component response regulator [Rhizobium leguminosar | 1 | 2e-71 | |
332716497 | 514 | sigma 54 dependent transcriptional activator [Agrobacte | 1 | 5e-71 |
>gi|315122736|ref|YP_004063225.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 494 | Back alignment and organism information |
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Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/496 (59%), Positives = 376/496 (75%), Gaps = 16/496 (3%) Query: 1 MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV----SDLSTISKIQVNVI 56 M K+SLD + +LIID+DDEQ +IK+++ESYGYDVFI++V DL + KI+V+VI Sbjct: 1 MHIKRSLDDRQGLLIIDQDDEQSNLIKEYMESYGYDVFIIDVLSQCPDLLVLDKIKVDVI 60 Query: 57 FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQL 116 FLSLIN DDK +L+ IV+K+P +PIIVQT D +KIL L +RI K F N VS++ L Sbjct: 61 FLSLINFGDDKGKVLQTIVEKMPNIPIIVQTKHDELKILISSLQDRIPKCFFNPVSQEHL 120 Query: 117 CDSIICAL-REGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVG 175 SI L R+ ++E ++ LDSLIAVS MIQV++LARKA C IP+MI+GEFGVG Sbjct: 121 FYSIRSILERKKNSSAEEQKYFTLDSLIAVSSEMIQVINLARKAVYCTIPVMIEGEFGVG 180 Query: 176 KKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGG 235 KK L+ IH SG RA FPF +VNCG+ DQDK+EK LFG VDLQ +NS FLGKF+EANGG Sbjct: 181 KKTLAHSIHASGSRASFPFVVVNCGISDQDKVEKDLFGKVDLQGENSTYFLGKFVEANGG 240 Query: 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295 TI+LEEP AL L VQ +I +FIETGKIEF DSR A++LDVRLIF TEKNL +VK+ VF Sbjct: 241 TILLEEPSALSLKVQRKILHFIETGKIEFDDSRNALKLDVRLIFATEKNLFQEVKNQVFS 300 Query: 296 KDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355 KDLYY+IS+F I TLRSR +DIPWL FFL+ FC +N ++QI++S+KALS+LT Y W Sbjct: 301 KDLYYKISIFSCKIPTLRSRQDDIPWLARFFLKRFCLENNVQQINLSEKALSMLTHYKWT 360 Query: 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACT----CYTE---- 407 DNVQEL+NI+LR+V+G+KDS++TED F LL G +E+E ++ T+ T C + Sbjct: 361 DNVQELENIILRSVVGIKDSYITEDCFTSLLFEAGNQEKEINSNTSETFDIYCMQDENNN 420 Query: 408 -GKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRS 466 +SS+ + ++S+ +I +I + GE+RRLSDIEKE+I LAMKLYR QMSEVARRLGIGRS Sbjct: 421 IPQSSNYL--SISKGTIFSIDKYGEIRRLSDIEKEMIRLAMKLYREQMSEVARRLGIGRS 478 Query: 467 TLYRKIREYNIEVDSL 482 TLYRKI+EYNIEVD+L Sbjct: 479 TLYRKIKEYNIEVDTL 494 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227823368|ref|YP_002827340.1| sigma-54 dependent DNA-binding response regulator [Sinorhizobium fredii NGR234] Length = 514 | Back alignment and organism information |
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>gi|15966548|ref|NP_386901.1| putative sigma-54-dependent transcription regulator protein [Sinorhizobium meliloti 1021] Length = 513 | Back alignment and organism information |
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>gi|86359139|ref|YP_471031.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CFN 42] Length = 513 | Back alignment and organism information |
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>gi|150397881|ref|YP_001328348.1| two component sigma54 specific Fis family transcriptional regulator [Sinorhizobium medicae WSM419] Length = 549 | Back alignment and organism information |
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>gi|209550871|ref|YP_002282788.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 514 | Back alignment and organism information |
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>gi|190893375|ref|YP_001979917.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CIAT 652] Length = 513 | Back alignment and organism information |
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>gi|241206285|ref|YP_002977381.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 515 | Back alignment and organism information |
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>gi|116253805|ref|YP_769643.1| two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 494 | Back alignment and organism information |
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>gi|332716497|ref|YP_004443963.1| sigma 54 dependent transcriptional activator [Agrobacterium sp. H13-3] Length = 514 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 482 | putative sigma-54-dependent transcription regulator pro | ||
COG3829 | 560 | COG3829, RocR, Transcriptional regulator containing PAS | 9e-56 | |
COG3604 | 550 | COG3604, FhlA, Transcriptional regulator containing GAF | 7e-53 | |
PRK11388 | 638 | PRK11388, PRK11388, DNA-binding transcriptional regulat | 2e-45 | |
COG3284 | 606 | COG3284, AcoR, Transcriptional activator of acetoin/gly | 3e-43 | |
COG3283 | 511 | COG3283, TyrR, Transcriptional regulator of aromatic am | 2e-42 | |
TIGR01817 | 534 | TIGR01817, nifA, Nif-specific regulatory protein | 9e-41 | |
TIGR02915 | 445 | TIGR02915, PEP_resp_reg, putative PEP-CTERM system resp | 2e-40 | |
COG1221 | 403 | COG1221, PspF, Transcriptional regulators containing an | 2e-39 | |
PRK10820 | 520 | PRK10820, PRK10820, DNA-binding transcriptional regulat | 3e-39 | |
TIGR02329 | 526 | TIGR02329, propionate_PrpR, propionate catabolism opero | 4e-34 | |
PRK05022 | 509 | PRK05022, PRK05022, anaerobic nitric oxide reductase tr | 4e-31 | |
PRK15424 | 538 | PRK15424, PRK15424, propionate catabolism operon regula | 1e-26 | |
PRK10365 | 441 | PRK10365, PRK10365, transcriptional regulatory protein | 3e-43 | |
TIGR01818 | 463 | TIGR01818, ntrC, nitrogen regulation protein NR(I) | 3e-39 | |
PRK11361 | 457 | PRK11361, PRK11361, acetoacetate metabolism regulatory | 7e-39 | |
COG2204 | 464 | COG2204, AtoC, Response regulator containing CheY-like | 4e-74 | |
PRK10923 | 469 | PRK10923, glnG, nitrogen regulation protein NR(I); Prov | 2e-38 | |
PRK15429 | 686 | PRK15429, PRK15429, formate hydrogenlyase transcription | 5e-29 | |
pfam00158 | 168 | pfam00158, Sigma54_activat, Sigma-54 interaction domain | 6e-31 | |
cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a wide | 6e-08 | |
PRK15115 | 444 | PRK15115, PRK15115, response regulator GlrR; Provisiona | 6e-30 | |
TIGR02974 | 329 | TIGR02974, phageshock_pspF, psp operon transcriptional | 2e-25 | |
PRK11608 | 326 | PRK11608, pspF, phage shock protein operon transcriptio | 2e-20 | |
COG4650 | 531 | COG4650, RtcR, Sigma54-dependent transcription regulato | 9e-12 | |
pfam02954 | 42 | pfam02954, HTH_8, Bacterial regulatory protein, Fis fam | 4e-08 |
>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
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>gnl|CDD|33094 COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
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>gnl|CDD|33093 COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein | Back alignment and domain information |
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>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response regulator | Back alignment and domain information |
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>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|182758 PRK10820, PRK10820, DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
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>gnl|CDD|162808 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
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>gnl|CDD|179916 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
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>gnl|CDD|185322 PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
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>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
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>gnl|CDD|162545 TIGR01818, ntrC, nitrogen regulation protein NR(I) | Back alignment and domain information |
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>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
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>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
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>gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
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>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain | Back alignment and domain information |
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>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
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>gnl|CDD|185070 PRK15115, PRK15115, response regulator GlrR; Provisional | Back alignment and domain information |
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>gnl|CDD|163093 TIGR02974, phageshock_pspF, psp operon transcriptional activator PspF | Back alignment and domain information |
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>gnl|CDD|183227 PRK11608, pspF, phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
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>gnl|CDD|34269 COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|145879 pfam02954, HTH_8, Bacterial regulatory protein, Fis family | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 482 | putative sigma-54-dependent transcription regulator pro | ||
COG2204 | 464 | AtoC Response regulator containing CheY-like receiver, | 100.0 | |
TIGR01818 | 471 | ntrC nitrogen regulation protein NR(I); InterPro: IPR01 | 100.0 | |
PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; Provis | 100.0 | |
TIGR02915 | 451 | PEP_resp_reg putative PEP-CTERM system response regulat | 100.0 | |
PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisional | 100.0 | |
PRK10365 | 441 | transcriptional regulatory protein ZraR; Provisional | 100.0 | |
TIGR01817 | 574 | nifA Nif-specific regulatory protein; InterPro: IPR0101 | 100.0 | |
COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA-type | 100.0 | |
PRK05022 | 510 | anaerobic nitric oxide reductase transcription regulato | 100.0 | |
COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA-type | 100.0 | |
PRK10820 | 513 | DNA-binding transcriptional regulator TyrR; Provisional | 100.0 | |
TIGR02974 | 349 | phageshock_pspF psp operon transcriptional activator Ps | 100.0 | |
PRK11388 | 639 | DNA-binding transcriptional regulator DhaR; Provisional | 100.0 | |
PRK11608 | 325 | pspF phage shock protein operon transcriptional activat | 100.0 | |
COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol meta | 100.0 | |
COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino acids | 100.0 | |
COG1221 | 403 | PspF Transcriptional regulators containing an AAA-type | 100.0 | |
COG4650 | 531 | RtcR Sigma54-dependent transcription regulator containi | 100.0 | |
PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.98 | |
TIGR00635 | 305 | ruvB Holliday junction DNA helicase RuvB; InterPro: IPR | 98.7 | |
COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subunit [D | 98.61 | |
TIGR02329 | 658 | propionate_PrpR propionate catabolism operon regulatory | 100.0 | |
pfam00158 | 168 | Sigma54_activat Sigma-54 interaction domain. | 100.0 | |
cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 99.5 | |
pfam07724 | 168 | AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry inc | 99.48 | |
PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.43 | |
pfam07726 | 131 | AAA_3 ATPase family associated with various cellular ac | 99.36 | |
pfam07728 | 139 | AAA_5 AAA domain (dynein-related subfamily). This Pfam | 99.35 | |
CHL00081 | 347 | chlI Mg-protoporyphyrin IX chelatase | 99.2 | |
pfam00493 | 327 | MCM MCM2/3/5 family. | 99.14 | |
COG0714 | 329 | MoxR-like ATPases [General function prediction only] | 99.11 | |
pfam01078 | 207 | Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesi | 99.09 | |
COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | 99.05 | |
smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.95 | |
TIGR02640 | 265 | gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR0 | 98.69 | |
PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.63 | |
COG0606 | 490 | Predicted ATPase with chaperone activity [Posttranslati | 98.47 | |
PRK13531 | 498 | regulatory ATPase RavA; Provisional | 98.44 | |
pfam00004 | 131 | AAA ATPase family associated with various cellular acti | 98.42 | |
COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General function p | 98.13 | |
KOG0733 | 802 | consensus | 98.08 | |
PHA02244 | 383 | ATPase-like protein | 98.02 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 98.0 | |
KOG0727 | 408 | consensus | 97.98 | |
smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 97.94 | |
PRK08116 | 262 | hypothetical protein; Validated | 97.8 | |
PRK07952 | 242 | DNA replication protein DnaC; Validated | 97.59 | |
PRK08181 | 269 | transposase; Validated | 97.57 | |
PRK06526 | 254 | transposase; Provisional | 97.55 | |
KOG0736 | 953 | consensus | 97.52 | |
PRK12377 | 248 | putative replication protein; Provisional | 97.49 | |
PRK06835 | 330 | DNA replication protein DnaC; Validated | 97.46 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 97.43 | |
KOG0739 | 439 | consensus | 97.38 | |
pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 97.36 | |
PRK09183 | 258 | transposase/IS protein; Provisional | 97.34 | |
pfam05673 | 248 | DUF815 Protein of unknown function (DUF815). This famil | 97.28 | |
PRK09112 | 352 | DNA polymerase III subunit delta'; Validated | 97.05 | |
KOG0726 | 440 | consensus | 96.99 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 96.95 | |
KOG0742 | 630 | consensus | 96.95 | |
KOG0740 | 428 | consensus | 96.9 | |
KOG0477 | 854 | consensus | 96.89 | |
PRK07471 | 363 | DNA polymerase III subunit delta'; Validated | 96.82 | |
PRK06921 | 265 | hypothetical protein; Provisional | 96.82 | |
KOG0730 | 693 | consensus | 96.81 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 96.8 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 96.76 | |
COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 96.7 | |
PRK08939 | 306 | primosomal protein DnaI; Reviewed | 96.34 | |
KOG0735 | 952 | consensus | 96.14 | |
KOG0651 | 388 | consensus | 95.9 | |
PRK07132 | 303 | DNA polymerase III subunit delta'; Validated | 95.53 | |
COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General function p | 95.18 | |
PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subunit Mc | 94.72 | |
pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 94.17 | |
cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor doma | 93.04 | |
PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 93.01 | |
smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation facto | 92.89 | |
cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) sm | 92.47 | |
cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the | 92.28 | |
cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family | 91.94 | |
cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Ar | 91.91 | |
cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppres | 91.17 | |
KOG0479 | 818 | consensus | 91.09 | |
cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfamily co | 91.08 | |
cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems involved i | 90.88 | |
cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is hig | 90.33 | |
TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory prote | 99.94 | |
PRK00742 | 345 | chemotaxis-specific methylesterase; Provisional | 99.83 | |
PRK12555 | 340 | chemotaxis-specific methylesterase; Provisional | 99.79 | |
COG2201 | 350 | CheB Chemotaxis response regulator containing a CheY-li | 99.52 | |
COG3706 | 435 | PleD Response regulator containing a CheY-like receiver | 98.59 | |
PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; Provi | 91.86 | |
PRK10693 | 337 | response regulator of RpoS; Provisional | 99.92 | |
PRK10046 | 225 | dpiA two-component response regulator DpiA; Provisional | 99.91 | |
PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 99.91 | |
PRK11083 | 229 | DNA-binding response regulator CreB; Provisional | 99.9 | |
PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.9 | |
PRK09836 | 226 | DNA-binding transcriptional activator CusR; Provisional | 99.89 | |
PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 99.89 | |
PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provisional | 99.89 | |
CHL00148 | 240 | orf27 Ycf27; Reviewed | 99.89 | |
PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provisional | 99.88 | |
pfam00072 | 111 | Response_reg Response regulator receiver domain. This d | 99.88 | |
PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 99.88 | |
PRK11517 | 223 | transcriptional regulatory protein YedW; Provisional | 99.88 | |
PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provisional | 99.88 | |
PRK09390 | 202 | fixJ response regulator FixJ; Provisional | 99.87 | |
PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provisional | 99.87 | |
PRK11173 | 237 | two-component response regulator; Provisional | 99.87 | |
PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provisional | 99.87 | |
cd00156 | 113 | REC Signal receiver domain; originally thought to be un | 99.86 | |
PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provisional | 99.86 | |
PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provisional | 99.86 | |
PRK10766 | 224 | DNA-binding transcriptional regulator TorR; Provisional | 99.86 | |
PRK13557 | 538 | histidine kinase; Provisional | 99.86 | |
PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provisional | 99.86 | |
COG0745 | 229 | OmpR Response regulators consisting of a CheY-like rece | 99.86 | |
COG4566 | 202 | TtrR Response regulator [Signal transduction mechanisms | 99.85 | |
TIGR01387 | 219 | cztR_silR_copR heavy metal response regulator; InterPro | 99.85 | |
PRK13856 | 241 | two-component response regulator VirG; Provisional | 99.85 | |
COG4753 | 475 | Response regulator containing CheY-like receiver domain | 99.85 | |
PRK10841 | 947 | hybrid sensory kinase in two-component regulatory syste | 99.85 | |
PRK11107 | 920 | hybrid sensory histidine kinase BarA; Provisional | 99.84 | |
PRK09959 | 1197 | hybrid sensory histidine kinase in two-component regula | 99.84 | |
PRK13435 | 141 | response regulator; Provisional | 99.82 | |
PRK11466 | 912 | hybrid sensory histidine kinase TorS; Provisional | 99.82 | |
PRK11091 | 779 | aerobic respiration control sensor protein ArcB; Provis | 99.8 | |
COG3437 | 360 | Response regulator containing a CheY-like receiver doma | 99.77 | |
COG4565 | 224 | CitB Response regulator of citrate/malate metabolism [T | 99.76 | |
TIGR02875 | 270 | spore_0_A sporulation transcription factor Spo0A; Inter | 99.74 | |
PRK10403 | 215 | transcriptional regulator NarP; Provisional | 99.73 | |
PRK10651 | 216 | transcriptional regulator NarL; Provisional | 99.72 | |
PRK13837 | 831 | two-component VirA-like sensor kinase; Provisional | 99.72 | |
PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provisional | 99.71 | |
COG3706 | 435 | PleD Response regulator containing a CheY-like receiver | 99.71 | |
PRK09483 | 216 | response regulator; Provisional | 99.7 | |
PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 99.68 | |
COG3947 | 361 | Response regulator containing CheY-like receiver and SA | 99.67 | |
COG2197 | 211 | CitB Response regulator containing a CheY-like receiver | 99.65 | |
KOG0519 | 786 | consensus | 99.64 | |
COG4567 | 182 | Response regulator consisting of a CheY-like receiver d | 99.63 | |
PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 99.62 | |
PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provisional | 99.57 | |
PRK11697 | 239 | putative two-component response-regulatory protein YehT | 99.56 | |
COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction mecha | 99.55 | |
TIGR02956 | 1052 | TMAO_torS TMAO reductase sytem sensor TorS; InterPro: I | 99.55 | |
PRK09191 | 261 | two-component response regulator; Provisional | 99.55 | |
PRK13558 | 674 | bacterio-opsin activator; Provisional | 99.48 | |
PRK10100 | 216 | DNA-binding transcriptional regulator CsgD; Provisional | 99.37 | |
COG3707 | 194 | AmiR Response regulator with putative antiterminator ou | 99.15 | |
PRK11475 | 205 | DNA-binding transcriptional activator BglJ; Provisional | 99.0 | |
COG3279 | 244 | LytT Response regulator of the LytR/AlgR family [Transc | 98.99 | |
PRK09581 | 457 | pleD response regulator PleD; Reviewed | 98.52 | |
pfam06490 | 109 | FleQ Flagellar regulatory protein FleQ. This domain is | 98.48 | |
PRK11107 | 920 | hybrid sensory histidine kinase BarA; Provisional | 98.39 | |
TIGR01815 | 726 | TrpE-clade3 anthranilate synthase; InterPro: IPR010112 | 96.51 | |
COG1204 | 766 | Superfamily II helicase [General function prediction on | 93.94 | |
cd02068 | 127 | radical_SAM_B12_BD B12 binding domain_like associated w | 93.41 | |
TIGR02538 | 577 | type_IV_pilB type IV-A pilus assembly ATPase PilB; Inte | 91.68 | |
cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This domain bi | 90.93 | |
TIGR02902 | 532 | spore_lonB ATP-dependent protease LonB; InterPro: IPR01 | 99.81 | |
PRK13342 | 417 | recombination factor protein RarA; Reviewed | 99.34 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.27 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 99.26 | |
PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 99.25 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 99.25 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 99.23 | |
PRK00440 | 318 | rfc replication factor C small subunit; Reviewed | 99.16 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 99.13 | |
COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the Holl | 99.12 | |
pfam05496 | 234 | RuvB_N Holliday junction DNA helicase ruvB N-terminus. | 99.02 | |
PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.98 | |
PRK08903 | 227 | hypothetical protein; Validated | 98.85 | |
PRK04195 | 403 | replication factor C large subunit; Provisional | 98.84 | |
TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 98.84 | |
PRK03992 | 390 | proteasome-activating nucleotidase; Provisional | 98.82 | |
CHL00176 | 631 | ftsH cell division protein; Validated | 98.82 | |
TIGR02442 | 688 | Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR0 | 98.78 | |
TIGR01241 | 505 | FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: | 98.77 | |
PRK05642 | 234 | DNA replication initiation factor; Validated | 98.68 | |
PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.67 | |
pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 98.66 | |
COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subunit [P | 98.63 | |
PRK08727 | 233 | hypothetical protein; Validated | 98.62 | |
PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.61 | |
PRK05563 | 541 | DNA polymerase III subunits gamma and tau; Validated | 98.59 | |
PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validated | 98.59 | |
KOG1051 | 898 | consensus | 98.56 | |
PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 98.55 | |
PRK07270 | 557 | DNA polymerase III subunits gamma and tau; Validated | 98.52 | |
PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 98.47 | |
PRK06893 | 229 | DNA replication initiation factor; Validated | 98.44 | |
TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family; InterPro: IPR | 98.43 | |
TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 98.42 | |
KOG0731 | 774 | consensus | 98.42 | |
PRK07003 | 816 | DNA polymerase III subunits gamma and tau; Validated | 98.41 | |
PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 98.4 | |
TIGR02397 | 363 | dnaX_nterm DNA polymerase III, subunits gamma and tau; | 98.35 | |
PRK06305 | 462 | DNA polymerase III subunits gamma and tau; Validated | 98.33 | |
PRK07764 | 775 | DNA polymerase III subunits gamma and tau; Validated | 98.33 | |
PRK08451 | 523 | DNA polymerase III subunits gamma and tau; Validated | 98.31 | |
KOG0733 | 802 | consensus | 98.31 | |
KOG2028 | 554 | consensus | 98.3 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 98.29 | |
PRK08853 | 717 | DNA polymerase III subunits gamma and tau; Validated | 98.28 | |
TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 98.28 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.27 | |
PRK06647 | 560 | DNA polymerase III subunits gamma and tau; Validated | 98.25 | |
PRK06674 | 563 | DNA polymerase III subunits gamma and tau; Validated | 98.25 | |
PRK07994 | 643 | DNA polymerase III subunits gamma and tau; Validated | 98.24 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 98.23 | |
PRK09111 | 600 | DNA polymerase III subunits gamma and tau; Validated | 98.21 | |
PRK08691 | 704 | DNA polymerase III subunits gamma and tau; Validated | 98.2 | |
COG0593 | 408 | DnaA ATPase involved in DNA replication initiation [DNA | 98.2 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 98.18 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 98.11 | |
KOG0734 | 752 | consensus | 98.11 | |
PRK08770 | 663 | DNA polymerase III subunits gamma and tau; Validated | 98.07 | |
PRK09087 | 226 | hypothetical protein; Validated | 98.03 | |
PRK05896 | 613 | DNA polymerase III subunits gamma and tau; Validated | 98.01 | |
PRK07133 | 718 | DNA polymerase III subunits gamma and tau; Validated | 97.96 | |
COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational modi | 97.88 | |
PRK06872 | 696 | DNA polymerase III subunits gamma and tau; Provisional | 97.88 | |
PRK05648 | 705 | DNA polymerase III subunits gamma and tau; Reviewed | 97.85 | |
KOG0989 | 346 | consensus | 97.8 | |
PRK12323 | 721 | DNA polymerase III subunits gamma and tau; Provisional | 97.68 | |
KOG0729 | 435 | consensus | 97.36 | |
COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA replic | 97.16 | |
PTZ00112 | 650 | origin recognition complex 1 protein; Provisional | 96.74 | |
KOG0652 | 424 | consensus | 96.6 | |
pfam05621 | 302 | TniB Bacterial TniB protein. This family consists of se | 96.55 | |
KOG0991 | 333 | consensus | 94.01 | |
KOG0741 | 744 | consensus | 92.5 | |
KOG2170 | 344 | consensus | 90.25 | |
TIGR02903 | 616 | spore_lon_C ATP-dependent protease, Lon family; InterPr | 99.77 | |
TIGR02880 | 284 | cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in | 97.74 | |
TIGR02030 | 340 | BchI-ChlI magnesium chelatase ATPase subunit I; InterPr | 97.71 | |
COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (predict | 97.21 | |
PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 99.5 | |
CHL00195 | 491 | ycf46 Ycf46; Provisional | 99.07 | |
PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.91 | |
CHL00181 | 287 | cbbX CbbX; Provisional | 98.82 | |
PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 98.8 | |
TIGR00763 | 941 | lon ATP-dependent protease La; InterPro: IPR004815 Prot | 98.78 | |
COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttranslationa | 98.74 | |
KOG0730 | 693 | consensus | 98.68 | |
KOG0480 | 764 | consensus | 98.61 | |
COG1241 | 682 | MCM2 Predicted ATPase involved in replication control, | 98.51 | |
TIGR02881 | 261 | spore_V_K stage V sporulation protein K; InterPro: IPR0 | 98.24 | |
KOG2004 | 906 | consensus | 98.23 | |
TIGR02031 | 705 | BchD-ChlD magnesium chelatase ATPase subunit D; InterPr | 98.2 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 98.11 | |
PRK06620 | 214 | hypothetical protein; Validated | 97.87 | |
KOG0737 | 386 | consensus | 97.78 | |
KOG0738 | 491 | consensus | 97.73 | |
KOG1969 | 877 | consensus | 97.55 | |
COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA | 97.44 | |
KOG0728 | 404 | consensus | 96.95 | |
PRK05629 | 331 | hypothetical protein; Validated | 96.02 | |
KOG0481 | 729 | consensus | 94.62 | |
PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 94.16 | |
TIGR01420 | 350 | pilT_fam twitching motility protein; InterPro: IPR00632 | 92.6 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 99.36 | |
TIGR02418 | 553 | acolac_catab acetolactate synthase, catabolic; InterPro | 93.89 | |
PRK01905 | 77 | DNA-binding protein Fis; Provisional | 99.15 | |
PRK00430 | 98 | fis DNA-binding protein Fis; Provisional | 99.14 | |
pfam02954 | 42 | HTH_8 Bacterial regulatory protein, Fis family. | 99.0 | |
COG2901 | 98 | Fis Factor for inversion stimulation Fis, transcription | 98.8 | |
TIGR02040 | 453 | PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR | 98.64 | |
COG4567 | 182 | Response regulator consisting of a CheY-like receiver d | 98.07 | |
COG2508 | 421 | Regulator of polyketide synthase expression [Signal tra | 96.52 | |
PRK11477 | 385 | carbohydrate diacid transcriptional activator CdaR; Pro | 94.94 | |
PRK05657 | 328 | RNA polymerase sigma factor RpoS; Validated | 92.99 | |
PRK13413 | 200 | mpi multiple promoter invertase; Provisional | 92.59 | |
COG1342 | 99 | Predicted DNA-binding proteins [General function predic | 91.9 | |
cd00569 | 42 | HTH_Hin_like Helix-turn-helix domain of Hin and related | 91.88 | |
pfam02001 | 100 | DUF134 Protein of unknown function DUF134. This family | 91.67 | |
COG3835 | 376 | CdaR Sugar diacid utilization regulator [Transcription | 91.66 | |
pfam09862 | 113 | DUF2089 Protein of unknown function(DUF2089). This doma | 91.35 | |
smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenou | 90.54 | |
COG1654 | 79 | BirA Biotin operon repressor [Transcription] | 90.28 | |
PRK04841 | 903 | transcriptional regulator MalT; Provisional | 90.25 | |
pfam06322 | 64 | Phage_NinH Phage NinH protein. This family consists of | 90.16 | |
COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Posttra | 98.62 | |
PRK05574 | 336 | holA DNA polymerase III subunit delta; Reviewed | 96.6 | |
PRK07914 | 320 | hypothetical protein; Reviewed | 96.15 | |
PRK05342 | 411 | clpX ATP-dependent protease ATP-binding subunit ClpX; P | 98.54 | |
KOG0478 | 804 | consensus | 98.27 | |
KOG0745 | 564 | consensus | 98.24 | |
COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [Posttr | 98.07 | |
PTZ00111 | 916 | DNA replication licensing factor MCM4; Provisional | 97.76 | |
COG0470 | 325 | HolB ATPase involved in DNA replication [DNA replicatio | 97.46 | |
PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.19 | |
KOG0744 | 423 | consensus | 97.03 | |
PRK07940 | 395 | DNA polymerase III subunit delta'; Validated | 96.5 | |
PRK04132 | 863 | replication factor C small subunit; Provisional | 96.42 | |
KOG0482 | 721 | consensus | 96.19 | |
PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 96.01 | |
PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 95.94 | |
pfam05729 | 165 | NACHT NACHT domain. This NTPase domain is found in apop | 95.76 | |
KOG1808 | 1856 | consensus | 95.74 | |
PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 94.81 | |
PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 94.65 | |
COG5022 | 1463 | Myosin heavy chain [Cytoskeleton] | 94.37 | |
cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 94.22 | |
COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General function p | 94.21 | |
PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 94.08 | |
KOG1051 | 898 | consensus | 93.97 | |
KOG0735 | 952 | consensus | 93.93 | |
PRK06871 | 324 | DNA polymerase III subunit delta'; Validated | 93.85 | |
TIGR01193 | 710 | bacteriocin_ABC ABC-type bacteriocin transporter; Inter | 93.71 | |
pfam05707 | 183 | Zot Zonular occludens toxin (Zot). This family consists | 93.48 | |
cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 92.9 | |
KOG2543 | 438 | consensus | 90.97 | |
smart00448 | 55 | REC cheY-homologous receiver domain. CheY regulates the | 98.52 | |
PRK05637 | 208 | anthranilate synthase component II; Provisional | 93.43 | |
TIGR00382 | 452 | clpX ATP-dependent Clp protease, ATP-binding subunit Cl | 98.45 | |
PRK05201 | 442 | hslU ATP-dependent protease ATP-binding subunit; Provis | 98.26 | |
TIGR00764 | 662 | lon_rel ATP-dependent protease, putative; InterPro: IPR | 95.95 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 95.81 | |
COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase subun | 94.83 | |
pfam03215 | 490 | Rad17 Rad17 cell cycle checkpoint protein. | 94.4 | |
KOG2680 | 454 | consensus | 91.97 | |
KOG1942 | 456 | consensus | 91.23 | |
TIGR00368 | 505 | TIGR00368 Mg chelatase homolog; InterPro: IPR004482 Thi | 98.21 | |
KOG0732 | 1080 | consensus | 97.46 | |
TIGR02688 | 470 | TIGR02688 conserved hypothetical protein TIGR02688; Int | 96.34 | |
cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzyme in | 93.21 | |
COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor type A | 97.06 | |
pfam08298 | 358 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 96.76 | |
KOG0741 | 744 | consensus | 96.54 | |
smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 96.07 | |
cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 96.06 | |
COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor type A | 95.79 | |
TIGR00390 | 463 | hslU heat shock protein HslVU, ATPase subunit HslU; Int | 95.75 | |
pfam00437 | 283 | GSPII_E Type II/IV secretion system protein. This famil | 95.07 | |
cd01380 | 691 | MYSc_type_V Myosin motor domain, type V myosins. Myosin | 94.93 | |
TIGR00634 | 605 | recN DNA repair protein RecN; InterPro: IPR004604 DNA r | 94.35 | |
COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein [Tran | 94.29 | |
TIGR02525 | 374 | plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IP | 94.27 | |
TIGR02782 | 315 | TrbB_P P-type conjugative transfer ATPase TrbB; InterPr | 94.26 | |
cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway component | 94.23 | |
PRK13633 | 281 | cobalt transporter ATP-binding subunit; Provisional | 93.94 | |
cd01385 | 692 | MYSc_type_IX Myosin motor domain, type IX myosins. Myos | 93.93 | |
TIGR02173 | 173 | cyt_kin_arch cytidylate kinase, putative; InterPro: IPR | 93.86 | |
COG3910 | 233 | Predicted ATPase [General function prediction only] | 93.69 | |
cd01386 | 767 | MYSc_type_XVIII Myosin motor domain, type XVIII myosins | 93.67 | |
PRK07261 | 171 | topology modulation protein; Provisional | 93.25 | |
PTZ00014 | 821 | myosin A; Provisional | 93.1 | |
PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.95 | |
smart00242 | 677 | MYSc Myosin. Large ATPases. ATPase; molecular motor. Mu | 92.93 | |
cd01378 | 674 | MYSc_type_I Myosin motor domain, type I myosins. Myosin | 92.86 | |
PRK08118 | 167 | topology modulation protein; Reviewed | 92.81 | |
PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisional | 92.79 | |
KOG1970 | 634 | consensus | 92.6 | |
cd01377 | 693 | MYSc_type_II Myosin motor domain, type II myosins. Myos | 92.57 | |
cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 92.45 | |
TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC transpor | 92.35 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 92.21 | |
PRK13851 | 343 | type IV secretion system protein VirB11; Provisional | 92.18 | |
PRK13894 | 320 | conjugal transfer ATPase TrbB; Provisional | 92.07 | |
pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 91.61 | |
PRK10419 | 266 | nikE nickel transporter ATP-binding protein; Provisiona | 91.55 | |
TIGR02769 | 267 | nickel_nikE nickel import ATP-binding protein NikE; Int | 91.26 | |
PRK13768 | 253 | GTPase; Provisional | 91.25 | |
COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transport s | 91.21 | |
PRK03839 | 180 | putative kinase; Provisional | 91.04 | |
cd01379 | 653 | MYSc_type_III Myosin motor domain, type III myosins. My | 91.01 | |
COG4178 | 604 | ABC-type uncharacterized transport system, permease and | 91.0 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 90.82 | |
cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1) | 90.79 | |
KOG0924 | 1042 | consensus | 90.75 | |
COG1123 | 539 | ATPase components of various ABC-type transport systems | 90.74 | |
PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Provisi | 90.67 | |
TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter; InterPro: I | 90.45 | |
pfam00063 | 679 | Myosin_head Myosin head (motor domain). | 90.36 | |
TIGR02203 | 603 | MsbA_lipidA lipid A export permease/ATP-binding protein | 90.35 | |
PRK10869 | 553 | recombination and repair protein; Provisional | 90.3 | |
TIGR02788 | 328 | VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR | 90.28 | |
COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transport s | 90.25 | |
COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleotide tr | 90.05 | |
PRK13566 | 724 | anthranilate synthase; Provisional | 96.49 | |
PRK11131 | 1295 | ATP-dependent RNA helicase HrpA; Provisional | 95.57 | |
PRK01172 | 674 | ski2-like helicase; Provisional | 94.91 | |
PRK02362 | 736 | ski2-like helicase; Provisional | 92.78 | |
COG4172 | 534 | ABC-type uncharacterized transport system, duplicated A | 92.74 | |
PRK00254 | 717 | ski2-like helicase; Provisional | 91.22 | |
pfam03709 | 111 | OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain | 96.1 | |
PRK13409 | 590 | putative ATPase RIL; Provisional | 94.98 | |
pfam02310 | 121 | B12-binding B12 binding domain. This domain binds to B1 | 94.22 | |
COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases componen | 92.88 | |
COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein [Tran | 95.36 | |
TIGR01842 | 556 | type_I_sec_PrtD type I secretion system ATPase; InterPr | 94.74 | |
cd01384 | 674 | MYSc_type_XI Myosin motor domain, plant-specific type X | 94.55 | |
PRK06762 | 166 | hypothetical protein; Provisional | 93.6 | |
COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATPase a | 93.52 | |
TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, DevA | 92.7 | |
cd01387 | 677 | MYSc_type_XV Myosin motor domain, type XV myosins. In v | 91.63 | |
PRK04328 | 250 | hypothetical protein; Provisional | 90.89 | |
PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 90.76 | |
COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signal tra | 90.45 | |
COG1493 | 308 | HprK Serine kinase of the HPr protein, regulates carboh | 94.6 | |
PRK05428 | 308 | HPr kinase/phosphorylase; Provisional | 92.76 | |
TIGR01846 | 703 | type_I_sec_HlyB type I secretion system ATPase; InterPr | 92.32 | |
KOG2035 | 351 | consensus | 91.83 | |
pfam07693 | 301 | KAP_NTPase KAP family P-loop domain. The KAP (after Kid | 91.02 |
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
---|
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism | Back alignment and domain information |
---|
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
---|
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT) | Back alignment and domain information |
---|
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
---|
>PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
---|
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation | Back alignment and domain information |
---|
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
---|
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
---|
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
---|
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
---|
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species | Back alignment and domain information |
---|
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
---|
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
---|
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
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>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
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>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
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>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
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>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase | Back alignment and domain information |
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>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
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>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA | Back alignment and domain information |
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>pfam00158 Sigma54_activat Sigma-54 interaction domain | Back alignment and domain information |
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>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
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>pfam07724 AAA_2 AAA domain (Cdc48 subfamily) | Back alignment and domain information |
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>PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
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>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
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>pfam07728 AAA_5 AAA domain (dynein-related subfamily) | Back alignment and domain information |
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>CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
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>pfam00493 MCM MCM2/3/5 family | Back alignment and domain information |
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>COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
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>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI | Back alignment and domain information |
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>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
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>smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
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>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , | Back alignment and domain information |
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>PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
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>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
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>pfam00004 AAA ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
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>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
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>KOG0733 consensus | Back alignment and domain information |
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>PHA02244 ATPase-like protein | Back alignment and domain information |
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>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
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>KOG0727 consensus | Back alignment and domain information |
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>smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
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>PRK08116 hypothetical protein; Validated | Back alignment and domain information |
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>PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
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>PRK08181 transposase; Validated | Back alignment and domain information |
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>PRK06526 transposase; Provisional | Back alignment and domain information |
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>KOG0736 consensus | Back alignment and domain information |
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>PRK12377 putative replication protein; Provisional | Back alignment and domain information |
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>PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
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>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA ( |
Back alignment and domain information |
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>KOG0739 consensus | Back alignment and domain information |
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>pfam01695 IstB IstB-like ATP binding protein | Back alignment and domain information |
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>PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
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>pfam05673 DUF815 Protein of unknown function (DUF815) | Back alignment and domain information |
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>PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
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>KOG0726 consensus | Back alignment and domain information |
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>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>KOG0742 consensus | Back alignment and domain information |
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>KOG0740 consensus | Back alignment and domain information |
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>KOG0477 consensus | Back alignment and domain information |
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