254780934

254780934

hypothetical protein CLIBASIA_04165

GeneID in NCBI database:8209956Locus tag:CLIBASIA_04165
Protein GI in NCBI database:254780934Protein Accession:YP_003065347.1
Gene range:+(924400, 925524)Protein Length:374aa
Gene description:hypothetical protein
COG prediction:[U] Flp pilus assembly protein TadG
KEGG prediction:hypothetical protein
SEED prediction:von Willebrand factor type A
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVM1 TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
cEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHcccccHHHHHHHHccccEEEEEcccccEEEEEEEEEccEEEEEEEEEEccccEEEEEEcccEEEccccccEEEEEEEEEEHHHHHHHHccccEEEEEHHHHHHHHHHHccccccHHHHHHccEEEEcccccHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHcccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHccccccEEEEccccHHHHHHHHHHHHcEEEEEEEc
cccEEEEEHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccEEEEEcccccHHHHHHHHHccccccHHHHHHcccccEEEEEcccccEEEEEEEcEccccEEEEcEccccccEEEEEEccEEEEccccccHEcEEEEEEccccHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHcccEEcccHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHccccccEEEccHHHHHHHHHHccccEEEEEEEEcc
MFSLNLNIRNFfynykggmtILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMnegngnnrkklkggdiLCRIKNTWNMSFRNelrdngfvndiddivrstsldivvvpqnegysisaisrykiplkfctfipwytnsrhivmpitssvkvnsqtdaRLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEvklipdvnnvvQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKfgvstnstpglkYAYNQIfdmqgmrqhcntedANYKKIIVFMtdgenlstkedqqSLYYCNEAKKRGAIVYAIGIRVirsheflracaspnsfylvenphsmydaFSHIGKDIVTKRIWYDK
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQimnegngnnrkklkggdILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSsvkvnsqtdARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSkfgvstnstpGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMnegngnnrkklkggDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
****N*NIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI**************GDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPI**********DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIF****************KKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYD*
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
*FSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK
MFSLNLNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKDIVTKRIWYDK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
254780833371 hypothetical protein CLIBASIA_03630 [Candidatus Li 1e-116
254780388458 hypothetical protein CLIBASIA_01365 [Candidatus Li 2e-17
254780388458 hypothetical protein CLIBASIA_01365 [Candidatus Li 2e-04
254781110420 von Willebrand factor type A [Candidatus Liberibac 1e-11
254781108398 von Willebrand factor type A [Candidatus Liberibac 2e-11
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Back     alignment
 Score =  408 bits (1048), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/370 (54%), Positives = 273/370 (73%), Gaps = 3/370 (0%)

Query: 6   LNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI 65
           LNIRNFFYN KG ++ILTAI LP+IF+V+G++IE SH FF+K  LH ++D SL++ AT+I
Sbjct: 4   LNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKI 63

Query: 66  MNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
           +N+ NGNN KK K       IKN W   FRNELR+NGF  DI++I RSTSL I++  Q++
Sbjct: 64  LNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHK 123

Query: 126 GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME 185
            Y++SA+SRY++P  FCTF PW  NS H  + ITSSVK++S++D  LDMM+VLDVS SM 
Sbjct: 124 DYNLSAVSRYEMPFIFCTF-PWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMN 182

Query: 186 SFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQR 245
             F   + K+ +A +SI  ML+ +K IPDVNNVV+SGLVTFS+KI + F L WGV H+Q 
Sbjct: 183 DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQE 242

Query: 246 KIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-E 304
           KI  L  FG +T STPGL+YAYN+IFD +   +H      +YKK I+F+TDGEN S   +
Sbjct: 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301

Query: 305 DQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKD 364
           +++SL+YCNEAK+RGAIVYAIG++   + +FL+ CASP+ FY V+N   ++DAF  IGK+
Sbjct: 302 NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361

Query: 365 IVTKRIWYDK 374
           +V +RI Y+K
Sbjct: 362 MVKQRILYNK 371

>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Back     alignment
 Score = 81.3 bits (199), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 21/210 (10%)

Query: 178 LDVSRSMESFFDSS-----ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232
           LD S S E F DSS     I K  +   ++ +++  +K I +VN+ V+ G   F++++  
Sbjct: 249 LDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS 308

Query: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNS------TPGLKYAYNQIFDMQGMRQHCNTEDAN 286
                WGV  L R I  +  F +  N          ++ AY+ I        H    +  
Sbjct: 309 DPSFSWGVHKLIRTI--VKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLE 366

Query: 287 YKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHE-----FLRACAS 341
            KK IV +TDGEN  T+++++ +  CN+AK +G  +  I   V ++ +     FL  CAS
Sbjct: 367 AKKYIVLLTDGEN--TQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424

Query: 342 PNSFYLVENPHSMYDAF-SHIGKDIVTKRI 370
           PNSF+   + H +   F   IG +I  + I
Sbjct: 425 PNSFFEANSTHELNKIFRDRIGNEIFERVI 454

>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Back     alignment
 Score = 38.1 bits (87), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 17  GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKK 76
           G   I+TA+ +P++  V GM+++V    + +  L      +++ A+  ++          
Sbjct: 20  GHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLE------ 73

Query: 77  LKGGDILCRIKNTWNM-----------SFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
               ++  R KN++             +F N L+ N    ++ DIVR T++++   P+  
Sbjct: 74  ----EVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEM--NPRKS 127

Query: 126 GYSISAISRY 135
            Y +   SRY
Sbjct: 128 AYQVVLSSRY 137

>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Back     alignment
 Score = 62.4 bits (150), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 169/400 (42%), Gaps = 51/400 (12%)

Query: 16  KGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMN-------- 67
           K   +I+ A+ +    L++G +I V    + K  + S  + +++  A+++++        
Sbjct: 19  KANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDR 78

Query: 68  -EGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVN-DIDDIVRSTSLDIVVVPQNE 125
            E   N+ K+    D    IKN    S         F N +I +IV S+ + +  +  N 
Sbjct: 79  FESISNHAKRALIDDAKRFIKNHIKESLSG--YSAVFYNTEIQNIVNSSRISMTHMANNR 136

Query: 126 --------GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIV 177
                    Y++  ++ Y   L+F   +     ++ IV  I + +++         + +V
Sbjct: 137 LDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPALLRIEMGERPIFLIELV 196

Query: 178 LDVSRSMESFF--------------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGL 223
           +D+S SM                  D   TK+     ++   L+ + L+  V   V  GL
Sbjct: 197 VDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGL 256

Query: 224 VTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVS-----TNSTPGLKYAYN-------QIF 271
           + ++ ++E+     WG   ++   +Y+++   S     T+STP +K AY        + F
Sbjct: 257 IGYTTRVEKNIEPSWGTEKVR---QYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313

Query: 272 DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV-I 330
                RQ        ++K I+F+TDGEN + K +  ++  C++AK+    +  I I    
Sbjct: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373

Query: 331 RSHEFLRAC-ASPNSFYLVENPHSMYDAFSHIGKDIVTKR 369
                L+ C +SP   Y V N  S+   F +I + +V ++
Sbjct: 374 NGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRK 413

>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Back     alignment
 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%)

Query: 22  LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81
           +TAI + + FL +   I+++HI +++  + S +D +++     I+++    +    K   
Sbjct: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58

Query: 82  ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139
              +    +    +  L+   ++ +   DI +   ++I     N   Y   + ++Y+IP 
Sbjct: 59  ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115

Query: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185
           +       IP      ++ +  T  ++ +S+  A + + +VLDVSRSME           
Sbjct: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172

Query: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216
                          SF+  + TK             ID+ I+S   ++  + K I +  
Sbjct: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232

Query: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273
           N+ V+ G + ++  I   +   L   ++ ++ ++  L+ +  +TN+ P + +AY ++++ 
Sbjct: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290

Query: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329
           +    H        KK ++F+TDGEN      Q    +L  C   +  G  +Y++ +   
Sbjct: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350

Query: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370
               + LR C  S   F+ V +   + ++F  I   I  + +
Sbjct: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
254780833371 hypothetical protein CLIBASIA_03630 [Candidatus Liberib 1 1e-112
315122347362 hypothetical protein CKC_02995 [Candidatus Liberibacter 1 4e-51
163760496363 hypothetical protein HPDFL43_04296 [Hoeflea phototrophi 1 3e-14
254780388458 hypothetical protein CLIBASIA_01365 [Candidatus Liberib 1 2e-13
241206334400 hypothetical protein Rleg_3648 [Rhizobium leguminosarum 1 9e-12
222087111401 hypothetical protein Arad_3867 [Agrobacterium radiobact 1 2e-10
150397936419 von Willebrand factor type A [Sinorhizobium medicae WSM 1 3e-10
315122199463 hypothetical protein CKC_02245 [Candidatus Liberibacter 1 6e-08
307945905432 putative von Willebrand factor type A [Roseibium sp. Tr 1 8e-08
254781110420 von Willebrand factor type A [Candidatus Liberibacter a 1 1e-07
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Back     alignment and organism information
 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/370 (54%), Positives = 273/370 (73%), Gaps = 3/370 (0%)

Query: 6   LNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI 65
           LNIRNFFYN KG ++ILTAI LP+IF+V+G++IE SH FF+K  LH ++D SL++ AT+I
Sbjct: 4   LNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKI 63

Query: 66  MNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
           +N+ NGNN KK K       IKN W   FRNELR+NGF  DI++I RSTSL I++  Q++
Sbjct: 64  LNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHK 123

Query: 126 GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME 185
            Y++SA+SRY++P  FCTF PW  NS H  + ITSSVK++S++D  LDMM+VLDVS SM 
Sbjct: 124 DYNLSAVSRYEMPFIFCTF-PWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMN 182

Query: 186 SFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQR 245
             F   + K+ +A +SI  ML+ +K IPDVNNVV+SGLVTFS+KI + F L WGV H+Q 
Sbjct: 183 DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQE 242

Query: 246 KIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-E 304
           KI  L  FG +T STPGL+YAYN+IFD +   +H      +YKK I+F+TDGEN S   +
Sbjct: 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301

Query: 305 DQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKD 364
           +++SL+YCNEAK+RGAIVYAIG++   + +FL+ CASP+ FY V+N   ++DAF  IGK+
Sbjct: 302 NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361

Query: 365 IVTKRIWYDK 374
           +V +RI Y+K
Sbjct: 362 MVKQRILYNK 371


Species: Candidatus Liberibacter asiaticus
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|315122347|ref|YP_004062836.1| hypothetical protein CKC_02995 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 362 Back     alignment and organism information
>gi|163760496|ref|ZP_02167578.1| hypothetical protein HPDFL43_04296 [Hoeflea phototrophica DFL-43] Length = 363 Back     alignment and organism information
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Back     alignment and organism information
>gi|241206334|ref|YP_002977430.1| hypothetical protein Rleg_3648 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 400 Back     alignment and organism information
>gi|222087111|ref|YP_002545646.1| hypothetical protein Arad_3867 [Agrobacterium radiobacter K84] Length = 401 Back     alignment and organism information
>gi|150397936|ref|YP_001328403.1| von Willebrand factor type A [Sinorhizobium medicae WSM419] Length = 419 Back     alignment and organism information
>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 463 Back     alignment and organism information
>gi|307945905|ref|ZP_07661241.1| putative von Willebrand factor type A [Roseibium sp. TrichSKD4] Length = 432 Back     alignment and organism information
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
smart00327177 smart00327, VWA, von Willebrand factor (vWF) type A dom 2e-11
pfam00092177 pfam00092, VWA, von Willebrand factor type A domain 9e-11
cd01450161 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type 2e-07
cd01471186 cd01471, vWA_micronemal_protein, Micronemal proteins: T 2e-06
cd01472164 cd01472, vWA_collagen, von Willebrand factor (vWF) type 0.001
cd00198161 cd00198, vWFA, Von Willebrand factor type A (vWA) domai 4e-11
cd01456206 cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand fa 8e-05
cd01469177 cd01469, vWA_integrins_alpha_subunit, Integrins are a c 9e-04
TIGR03436296 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial 0.001
cd01476163 cd01476, VWA_integrin_invertebrates, VWA_integrin (inve 8e-05
>gnl|CDD|128622 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information
>gnl|CDD|143873 pfam00092, VWA, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|29223 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|29244 cd01471, vWA_micronemal_protein, Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>gnl|CDD|29245 cd01472, vWA_collagen, von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>gnl|CDD|29222 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|29229 cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|29242 cd01469, vWA_integrins_alpha_subunit, Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>gnl|CDD|163263 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain Back     alignment and domain information
>gnl|CDD|29249 cd01476, VWA_integrin_invertebrates, VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
PRK13685326 hypothetical protein; Provisional 99.97
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor type A 99.96
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor type 99.96
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin 99.93
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor ty 99.92
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extr 99.91
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type 99.91
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) typ 99.9
cd01470198 vWA_complement_factors Complement factors B and C2 are 99.9
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is 99.89
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel like: V 99.89
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor type 99.88
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelata 99.86
cd01469177 vWA_integrins_alpha_subunit Integrins are a class of ad 99.85
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA doma 99.84
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhe 99.84
cd01471186 vWA_micronemal_protein Micronemal proteins: The Toxopla 99.84
cd01472164 vWA_collagen von Willebrand factor (vWF) type A domain; 99.83
pfam00092177 VWA von Willebrand factor type A domain. 99.83
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. Memb 99.82
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extracellula 99.8
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) li 99.79
TIGR00868 874 hCaCC calcium-activated chloride channel protein 1; Int 99.78
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebrates) 99.77
COG4245207 TerY Uncharacterized protein encoded in toxicity protec 99.64
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] 99.6
cd01454174 vWA_norD_type norD type: Denitrifying bacteria contain 99.56
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand facto 99.36
TIGR02442688 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR0 99.33
PRK13406584 bchD magnesium chelatase subunit D; Provisional 99.29
TIGR02031705 BchD-ChlD magnesium chelatase ATPase subunit D; InterPr 99.28
KOG2353 1104 consensus 99.2
cd01453183 vWA_transcription_factor_IIH_type Transcription factors 99.15
COG4548637 NorD Nitric oxide reductase activation protein [Inorgan 98.85
COG2425437 Uncharacterized protein containing a von Willebrand fac 98.84
pfam11775220 CobT_C Cobalamin biosynthesis protein CobT VWA domain. 98.79
pfam04056250 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits o 98.49
pfam00362424 Integrin_beta Integrin, beta chain. Integrins have been 98.46
KOG2807 378 consensus 98.38
smart00187423 INB Integrin beta subunits (N-terminal portion of extra 98.35
KOG3768 888 consensus 98.32
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) do 98.3
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a major 98.15
pfam06707206 DUF1194 Protein of unknown function (DUF1194). This fam 98.02
pfam04285421 DUF444 Protein of unknown function (DUF444). Bacterial 97.86
PRK05325414 hypothetical protein; Provisional 97.75
COG2304 399 Uncharacterized protein containing a von Willebrand fac 97.71
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of the AAA 97.62
COG4867652 Uncharacterized protein with a von Willebrand factor ty 97.39
KOG2884259 consensus 97.31
COG5151 421 SSL1 RNA polymerase II transcription initiation/nucleot 96.83
COG2718423 Uncharacterized conserved protein [Function unknown] 96.68
TIGR02877392 spore_yhbH sporulation protein YhbH; InterPro: IPR01423 95.9
pfam03731222 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku het 94.4
cd01479244 Sec24-like Sec24-like: Protein and membrane traffic in 90.96
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) d 99.83
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was orig 99.78
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type 99.7
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor 98.98
PRK10997484 yieM hypothetical protein; Provisional 98.17
pfam05762223 VWA_CoxE VWA domain containing CoxE-like protein. This 98.1
KOG1226 783 consensus 97.52
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodime 96.71
LOAD_ku 521 consensus 96.05
pfam11443524 DUF2828 Domain of unknown function (DUF2828). This is a 95.69
COG3552395 CoxE Protein containing von Willebrand factor type A (v 95.2
cd01459254 vWA_copine_like VWA Copine: Copines are phospholipid-bi 95.15
KOG1327529 consensus 94.88
COG5148243 RPN10 26S proteasome regulatory complex, subunit RPN10/ 94.74
pfam11265219 Med25_VWA Mediator complex subunit 25 von Willebrand fa 93.75
pfam07002145 Copine Copine. This family represents a conserved regio 92.02
KOG4465598 consensus 91.59
COG4961185 TadG Flp pilus assembly protein TadG [Intracellular tra 99.49
COG4655 565 Predicted membrane protein [Function unknown] 97.96
pfam0781143 TadE TadE-like protein. The members of this family are 96.58
pfam09967412 DUF2201 Predicted metallopeptidase (DUF2201). This doma 97.58
COG3864396 Uncharacterized protein conserved in bacteria [Function 94.21
COG4547620 CobT Cobalamin biosynthesis protein CobT (nicotinate-mo 97.23
TIGR01651606 CobT cobaltochelatase, CobT subunit; InterPro: IPR00653 96.68
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>pfam00092 VWA von Willebrand factor type A domain Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX Back     alignment and domain information
>KOG2353 consensus Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>pfam11775 CobT_C Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information
>pfam04056 Ssl1 Ssl1-like Back     alignment and domain information
>pfam00362 Integrin_beta Integrin, beta chain Back     alignment and domain information
>KOG2807 consensus Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>KOG3768 consensus Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>pfam06707 DUF1194 Protein of unknown function (DUF1194) Back     alignment and domain information
>pfam04285 DUF444 Protein of unknown function (DUF444) Back     alignment and domain information
>PRK05325 hypothetical protein; Provisional Back     alignment and domain information
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>KOG2884 consensus Back     alignment and domain information
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG2718 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02877 spore_yhbH sporulation protein YhbH; InterPro: IPR014230 Proteins in this entry, typified by YhbH from Bacillus subtilis, are found in the genomes of nearly every endospore-forming bacterium, and in no other genomes Back     alignment and domain information
>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>pfam05762 VWA_CoxE VWA domain containing CoxE-like protein Back     alignment and domain information
>KOG1226 consensus Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>LOAD_ku consensus Back     alignment and domain information
>pfam11443 DUF2828 Domain of unknown function (DUF2828) Back     alignment and domain information
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>KOG1327 consensus Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>pfam11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A Back     alignment and domain information
>pfam07002 Copine Copine Back     alignment and domain information
>KOG4465 consensus Back     alignment and domain information
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4655 Predicted membrane protein [Function unknown] Back     alignment and domain information
>pfam07811 TadE TadE-like protein Back     alignment and domain information
>pfam09967 DUF2201 Predicted metallopeptidase (DUF2201) Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>TIGR01651 CobT cobaltochelatase, CobT subunit; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway) Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
2xwb_F 732 Crystal Structure Of Complement C3b In Complex With 2e-09
3hrz_D 741 Cobra Venom Factor (Cvf) In Complex With Human Fact 2e-09
3n2n_F185 The Crystal Structure Of Tumor Endothelial Marker 8 4e-09
1bhq_1189 Mac-1 I Domain Cadmium Complex Length = 189 7e-09
1idn_1190 Mac-1 I Domain Metal Free Length = 190 7e-09
1na5_A197 Integrin Alpha M I Domain Length = 197 7e-09
1mf7_A194 Integrin Alpha M I Domain Length = 194 7e-09
1jlm_A192 I-Domain From Integrin Cr3, Mn2+ Bound Length = 192 7e-09
2win_I 507 C3 Convertase (C3bbb) Stabilized By Scin Length = 5 9e-09
2ok5_A 752 Human Complement Factor B Length = 752 9e-09
1ido_A189 I-Domain From Integrin Cr3, Mg2+ Bound Length = 189 4e-08
1m1u_A195 An Isoleucine-Based Allosteric Switch Controls Affi 4e-08
1n9z_A192 Integrin Alpha M I Domain Mutant Length = 192 4e-08
1q0p_A223 A Domain Of Factor B Length = 223 5e-08
3k6s_A 1095 Structure Of Integrin Alphaxbeta2 Ectodomain Length 7e-08
2i6q_A 517 Complement Component C2a Length = 517 3e-07
2odp_A 509 Complement Component C2a, The Catalytic Fragment Of 9e-07
1n3y_A198 Crystal Structure Of The Alpha-X Beta2 Integrin I D 2e-06
1rrk_A 497 Crystal Structure Analysis Of The Bb Segment Of Fac 3e-06
2b2x_A223 Vla1 Rdeltah I-Domain Complexed With A Quadruple Mu 4e-06
1ck4_A198 Crystal Structure Of Rat A1b1 Integrin I-Domain. Le 3e-05
1tzn_a181 Crystal Structure Of The Anthrax Toxin Protective A 4e-05
1shu_X182 Crystal Structure Of The Von Willebrand Factor A Do 4e-05
1sht_X181 Crystal Structure Of The Von Willebrand Factor A Do 4e-05
1qcy_A193 The Crystal Structure Of The I-Domain Of Human Inte 5e-05
1pt6_A213 I Domain From Human Integrin Alpha1-Beta1 Length = 5e-05
1mhp_A192 Crystal Structure Of A Chimeric Alpha1 Integrin I-D 7e-05
1qc5_A192 I Domain From Integrin Alpha1-Beta1 Length = 192 2e-04
1qc5_B192 I Domain From Integrin Alpha1-Beta1 Length = 192 2e-04
3ibs_A218 Crystal Structure Of Conserved Hypothetical Protein 4e-04
1t6b_Y189 Crystal Structure Of B. Anthracis Protective Antige 4e-04
1xdd_A188 X-Ray Structure Of Lfa-1 I-Domain In Complex With L 4e-04
3e2m_A185 Lfa-1 I Domain Bound To Inhibitors Length = 185 0.001
>gi|317455060|pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732 Back     alignment and structure
 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSN- 228
             +++ +VLD S S+ +   +          +   ++  ++ +       + GLVT++  
Sbjct: 233 GSMNIYLVLDGSGSIGASDFTG---------AKKCLVNLIEKVASYGVKPRYGLVTYATY 283

Query: 229 ---KIEEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDA 285
               ++           + +++  ++       S    K A   ++ M         E  
Sbjct: 284 PKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGW 343

Query: 286 NYKKI-IVFMTDGENLSTKEDQQSLYYCNEA----------KKRGAIVYAIGIRVIRSHE 334
           N  +  I+ MTDG +    +    +    +           ++    VY  G+  + +  
Sbjct: 344 NRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQV 403

Query: 335 FLRACASPN----SFYLVENPHSMYDAFSHIGKDIVTKRI 370
            + A AS        + V++  ++ D F  +  +  +  +
Sbjct: 404 NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSL 443


>gi|251837060|pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741 Back     alignment and structure
>gi|316983245|pdb|3N2N|F Chain F, The Crystal Structure Of Tumor Endothelial Marker 8 (Tem8) Extracellular Domain Length = 185 Back     alignment and structure
>gi|157838288|pdb|1BHQ|1 Chain 1, Mac-1 I Domain Cadmium Complex Length = 189 Back     alignment and structure
>gi|253722212|pdb|1IDN|1 Chain 1, Mac-1 I Domain Metal Free Length = 190 Back     alignment and structure
>gi|31615654|pdb|1NA5|A Chain A, Integrin Alpha M I Domain Length = 197 Back     alignment and structure
>gi|31615583|pdb|1MF7|A Chain A, Integrin Alpha M I Domain Length = 194 Back     alignment and structure
>gi|157831557|pdb|1JLM|A Chain A, I-Domain From Integrin Cr3, Mn2+ Bound Length = 192 Back     alignment and structure
>gi|239781743|pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507 Back     alignment and structure
>gi|134105218|pdb|2OK5|A Chain A, Human Complement Factor B Length = 752 Back     alignment and structure
>gi|157831431|pdb|1IDO|A Chain A, I-Domain From Integrin Cr3, Mg2+ Bound Length = 189 Back     alignment and structure
>gi|22219356|pdb|1M1U|A Chain A, An Isoleucine-Based Allosteric Switch Controls Affinity And Shape Shifting In Integrin Cd11b A-Domain Length = 195 Back     alignment and structure
>gi|31615649|pdb|1N9Z|A Chain A, Integrin Alpha M I Domain Mutant Length = 192 Back     alignment and structure
>gi|47168593|pdb|1Q0P|A Chain A, A Domain Of Factor B Length = 223 Back     alignment and structure
>gi|283807143|pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain Length = 1095 Back     alignment and structure
>gi|118138230|pdb|2I6Q|A Chain A, Complement Component C2a Length = 517 Back     alignment and structure
>gi|126031547|pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5-Convertase Of Human Complement Length = 509 Back     alignment and structure
>gi|28948724|pdb|1N3Y|A Chain A, Crystal Structure Of The Alpha-X Beta2 Integrin I Domain Length = 198 Back     alignment and structure
>gi|58176651|pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497 Back     alignment and structure
>gi|99031847|pdb|2B2X|A Chain A, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of The Aqc2 Fab Length = 223 Back     alignment and structure
>gi|7766811|pdb|1CK4|A Chain A, Crystal Structure Of Rat A1b1 Integrin I-Domain. Length = 198 Back     alignment and structure
>gi|52695907|pdb|1TZN|AA Chain a, Crystal Structure Of The Anthrax Toxin Protective Antigen Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An Anthrax Toxin Receptor Length = 181 Back     alignment and structure
>gi|48425689|pdb|1SHU|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor Length = 182 Back     alignment and structure
>gi|48425688|pdb|1SHT|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor Length = 181 Back     alignment and structure
>gi|34810098|pdb|1QCY|A Chain A, The Crystal Structure Of The I-Domain Of Human Integrin Alpha1beta1 Length = 193 Back     alignment and structure
>gi|48425220|pdb|1PT6|A Chain A, I Domain From Human Integrin Alpha1-Beta1 Length = 213 Back     alignment and structure
>gi|30749469|pdb|1MHP|A Chain A, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain In Complex With The Fab Fragment Of A Humanized Neutralizing Antibody Length = 192 Back     alignment and structure
>gi|8569518|pdb|1QC5|A Chain A, I Domain From Integrin Alpha1-Beta1 Length = 192 Back     alignment and structure
>gi|8569519|pdb|1QC5|B Chain B, I Domain From Integrin Alpha1-Beta1 Length = 192 Back     alignment and structure
>gi|256599878|pdb|3IBS|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Batb From Bacteroides Thetaiotaomicron Length = 218 Back     alignment and structure
>gi|51247575|pdb|1T6B|Y Chain Y, Crystal Structure Of B. Anthracis Protective Antigen Complexed With Human Anthrax Toxin Receptor Length = 189 Back     alignment and structure
>gi|55670827|pdb|1XDD|A Chain A, X-Ray Structure Of Lfa-1 I-Domain In Complex With Lfa703 At 2.2a Resolution Length = 188 Back     alignment and structure
>gi|197107512|pdb|3E2M|A Chain A, Lfa-1 I Domain Bound To Inhibitors Length = 185 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
2odp_A 509 Complement C2; C3/C5 convertase, complement serine prot 9e-15
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, I do 1e-12
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sapiens 1e-10
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, blood 1e-10
3hrz_D 741 Complement factor B; serine protease, glycosilated, mul 7e-10
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacteriochl 3e-09
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell adhesi 4e-09
1pt6_A213 Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.8 2e-08
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold, mem 6e-08
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} S 8e-08
3gxb_A184 VON willebrand factor; VWA-like fold, blood coagulation 4e-06
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, antagonis 2e-05
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; nucle 5e-05
1atz_A189 VON willebrand factor; collagen-binding, hemostasis, di 1e-04
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1.30A { 1e-04
2b2x_A223 Integrin alpha-1; computational design, antibody-antige 3e-04
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hydrola 2e-08
1jey_B 565 KU80; double-strand DNA break repair, non-homologous EN 2e-04
2nvo_A535 RO sixty-related protein, RSR; alpha helical repeats, V 0.001
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509 Back     alignment and structure
 Score = 76.5 bits (187), Expect = 9e-15
 Identities = 33/226 (14%), Positives = 81/226 (35%), Gaps = 28/226 (12%)

Query: 163 KVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSG 222
           K+  Q    L++ ++LD S+S+            +  +S + M++ +       +V    
Sbjct: 1   KIQIQRSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSFEINVSV---A 51

Query: 223 LVTFSNKIE-EFFLLEWGVSHLQRKIKYLSKF-------GVSTNSTPGLKYAYNQIFDMQ 274
           ++TF+++ +    +L      +   I  L          G  TN+   L   Y  + +  
Sbjct: 52  IITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQM 111

Query: 275 GMRQHCNTEDANYKKIIVFMTD------GENLSTKEDQQSLYYCNEAKKRGAIVYAIGI- 327
            +           +  I+ +TD      G   +  +  + +   N+ +     +YAIG+ 
Sbjct: 112 RLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVG 171

Query: 328 RVIRSHEFLRACAS----PNSFYLVENPHSMYDAFSHIGKDIVTKR 369
           ++      L    S        +++++  +++  F H+        
Sbjct: 172 KLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTD 217


>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223 Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497 Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202 Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Length = 741 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Back     alignment and structure
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Length = 213 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Length = 194 Back     alignment and structure
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Length = 184 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Length = 200 Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Length = 192 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Length = 189 Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3f78_A* ... Length = 179 Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Length = 223 Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Length = 178 Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Length = 565 Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target374 hypothetical protein CLIBASIA_04165 [Candidatus Liberib
2odp_A 509 Complement C2; C3/C5 convertase, complement serine prot 99.93
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sapiens 99.91
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, I do 99.91
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold, mem 99.89
3ibs_A218 Conserved hypothetical protein BATB; structural genomic 99.88
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, antagonis 99.88
1pt6_A213 Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.8 99.87
2b2x_A223 Integrin alpha-1; computational design, antibody-antige 99.87
3gxb_A184 VON willebrand factor; VWA-like fold, blood coagulation 99.87
3hrz_D 741 Complement factor B; serine protease, glycosilated, mul 99.87
1atz_A189 VON willebrand factor; collagen-binding, hemostasis, di 99.86
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell adhesi 99.86
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} S 99.86
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, blood 99.83
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; nucle 99.78
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hydrola 99.75
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1.30A { 99.72
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacteriochl 99.64
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limbs, mi 99.62
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule, cel 99.59
2vdr_B 461 Integrin beta-3; cell adhesion/immune system, alternati 99.36
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EGF dom 99.21
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, cell 98.65
3eh1_A 751 Protein transport protein SEC24B; copii coat protein, v 97.02
3efo_B 770 SEC24 related gene family, member D; copii, coat protei 96.95
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zinc-fi 96.46
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SEC24 p 96.19
2nut_A 769 Protein transport protein SEC23A; human copii SEC23/24 96.05
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomyces c 95.98
3eh2_A 766 Protein transport protein SEC24C; copii-coat protein, v 95.82
1jey_B 565 KU80; double-strand DNA break repair, non-homologous EN 99.03
2nvo_A535 RO sixty-related protein, RSR; alpha helical repeats, V 98.94
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kD 98.59
1jey_A 609 KU70; double-strand DNA break repair, non-homologous EN 97.54
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
Probab=99.93  E-value=7.2e-24  Score=159.41  Aligned_cols=189  Identities=15%  Similarity=0.220  Sum_probs=145.0

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC----CCHHH
Q ss_conf             37787249999657864511313531379999998876322100236656734899998268505610204----78689
Q gi|254780934|r  167 QTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE----WGVSH  242 (374)
Q Consensus       167 ~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t----~~~~~  242 (374)
                      ...+.+||+||||.||||..      .+++.+++++..+++.+...   ....|++++.|++.+....+++    .+...
T Consensus         5 ~~~g~~DivfvlD~SgSm~~------~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~   75 (509)
T 2odp_A            5 QRSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSF---EINVSVAIITFASEPKVLMSVLNDNSRDMTE   75 (509)
T ss_dssp             CSSSEEEEEEEEECSTTSCH------HHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEEEEECTTSGGGGCHHH
T ss_pred             CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf             67898659999978699998------99999999999999961448---9974899999888357997178887557999


Q ss_pred             HHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH-----
Q ss_conf             9999860133----6877444203676776432223333102578865642799980687788888068999999-----
Q gi|254780934|r  243 LQRKIKYLSK----FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCN-----  313 (374)
Q Consensus       243 ~~~~i~~l~~----~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~-----  313 (374)
                      +...|+.+..    .+++|+++.|+..+++.+..............++.+|++||||||..|.+.+.........     
T Consensus        76 ~~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~iillTDG~~n~g~~~~~~~~~~~~~~~~  155 (509)
T 2odp_A           76 VISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNI  155 (509)
T ss_dssp             HHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999717345677899777999999999999987643023556667886299999488756699848999998766666


Q ss_pred             -HHHHCCCEEEEEEECC-CCCHHHHHHHCCC--C--CEEEECCHHHHHHHHHHHHHH
Q ss_conf             -9997898799999248-2227889982389--8--179838989999999999984
Q gi|254780934|r  314 -EAKKRGAIVYAIGIRV-IRSHEFLRACASP--N--SFYLVENPHSMYDAFSHIGKD  364 (374)
Q Consensus       314 -~~k~~gi~IytIg~~~-~~~~~~L~~~As~--~--~~~~a~~~~~L~~~f~~I~~~  364 (374)
                       ..++.+|.||+||+|. +.+.+.|+.+||.  +  |+|.++|.++|.++|++|-.+
T Consensus       156 ~~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~~  212 (509)
T 2odp_A          156 NQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV  212 (509)
T ss_dssp             CSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEEC
T ss_pred             HHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf             566306965999995886458999999865999971599948888999999740442



>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure