254780940
ribonuclease III
GeneID in NCBI database: | 8209962 | Locus tag: | CLIBASIA_04195 |
Protein GI in NCBI database: | 254780940 | Protein Accession: | YP_003065353.1 |
Gene range: | +(929867, 930550) | Protein Length: | 227aa |
Gene description: | ribonuclease III | ||
COG prediction: | none | ||
KEGG prediction: | rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] | ||
SEED prediction: | Ribonuclease III (EC 3.1.26.3) | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | RNA processing and degradation, bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | |||
315122353 | 232 | ribonuclease III [Candidatus Liberibacter solanacearum | 1 | 3e-98 | |
222085390 | 239 | ribonuclease III [Agrobacterium radiobacter K84] Length | 1 | 4e-73 | |
209548601 | 239 | ribonuclease III [Rhizobium leguminosarum bv. trifolii | 1 | 3e-72 | |
190891073 | 239 | ribonuclease III protein [Rhizobium etli CIAT 652] Leng | 1 | 5e-72 | |
86357028 | 239 | ribonuclease III [Rhizobium etli CFN 42] Length = 239 | 1 | 6e-72 | |
241203889 | 239 | ribonuclease III [Rhizobium leguminosarum bv. trifolii | 1 | 7e-72 | |
116251277 | 239 | ribonuclease III [Rhizobium leguminosarum bv. viciae 38 | 1 | 9e-72 | |
227821403 | 239 | ribonuclease III [Sinorhizobium fredii NGR234] Length = | 1 | 2e-71 | |
15964825 | 238 | ribonuclease III [Sinorhizobium meliloti 1021] Length = | 1 | 2e-71 | |
150395906 | 238 | ribonuclease III [Sinorhizobium medicae WSM419] Length | 1 | 3e-71 |
>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 | Back alignment and organism information |
---|
Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 200/225 (88%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++ Sbjct: 8 SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+ IQADVVESL Sbjct: 68 FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+ RSG Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDHDPRFTV+V++ GL +G+DCSKR+AEQ+AAAE+L+REGIW+ Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84] Length = 239 | Back alignment and organism information |
---|
>gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 | Back alignment and organism information |
---|
>gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 239 | Back alignment and organism information |
---|
>gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42] Length = 239 | Back alignment and organism information |
---|
>gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 | Back alignment and organism information |
---|
>gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] Length = 239 | Back alignment and organism information |
---|
>gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234] Length = 239 | Back alignment and organism information |
---|
>gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021] Length = 238 | Back alignment and organism information |
---|
>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419] Length = 238 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 1e-111 | |
TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-67 | |
PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 2e-59 | |
KOG1817 | 533 | KOG1817, KOG1817, KOG1817, Ribonuclease [RNA processing | 3e-26 | |
PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 1e-24 | |
PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 4e-24 | |
COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcriptio | 1e-58 | |
smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 2e-31 | |
cd00593 | 133 | cd00593, RIBOc, RIBOc | 2e-29 | |
pfam00636 | 96 | pfam00636, Ribonuclease_3, RNase3 domain | 4e-21 | |
KOG0701 | 1606 | KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dice | 1e-07 | |
KOG1817 | 533 | KOG1817, KOG1817, KOG1817, Ribonuclease [RNA processing | 2e-06 | |
KOG0701 | 1606 | KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dice | 1e-04 | |
KOG0701 | 1606 | KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dice | 5e-04 | |
cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 6e-15 | |
smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding motif | 3e-13 | |
pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 2e-12 | |
KOG3732 | 339 | KOG3732, KOG3732, KOG3732, Staufen and related double-s | 4e-04 |
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|162755 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
---|
>gnl|CDD|178863 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|37028 KOG1817, KOG1817, KOG1817, Ribonuclease [RNA processing and modification] | Back alignment and domain information |
---|
>gnl|CDD|183478 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
---|
>gnl|CDD|30916 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
---|
>gnl|CDD|128808 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
---|
>gnl|CDD|29697 cd00593, RIBOc, RIBOc | Back alignment and domain information |
---|
>gnl|CDD|144289 pfam00636, Ribonuclease_3, RNase3 domain | Back alignment and domain information |
---|
>gnl|CDD|35920 KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
---|
>gnl|CDD|37028 KOG1817, KOG1817, KOG1817, Ribonuclease [RNA processing and modification] | Back alignment and domain information |
---|
>gnl|CDD|35920 KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
---|
>gnl|CDD|35920 KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
---|
>gnl|CDD|28930 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
---|
>gnl|CDD|128652 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
---|
>gnl|CDD|143824 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
---|
>gnl|CDD|38936 KOG3732, KOG3732, KOG3732, Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport, Transcription] | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
TIGR02191 | 228 | RNaseIII ribonuclease III; InterPro: IPR011907 This fam | 100.0 | |
PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
PRK00102 | 228 | rnc ribonuclease III; Reviewed | 100.0 | |
COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
PRK12372 | 425 | ribonuclease III; Reviewed | 100.0 | |
KOG1817 | 533 | consensus | 100.0 | |
KOG3769 | 333 | consensus | 99.91 | |
KOG0701 | 1606 | consensus | 99.81 | |
smart00535 | 129 | RIBOc Ribonuclease III family. | 100.0 | |
cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. This g | 100.0 | |
pfam00636 | 96 | Ribonuclease_3 RNase3 domain. | 99.89 | |
KOG0701 | 1606 | consensus | 99.84 | |
KOG1817 | 533 | consensus | 99.8 | |
COG1939 | 132 | Ribonuclease III family protein [Replication, recombina | 97.77 | |
cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is not | 99.64 | |
smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.6 | |
KOG3732 | 339 | consensus | 99.33 | |
pfam00035 | 66 | dsrm Double-stranded RNA binding motif. Putative motif | 99.33 | |
KOG3732 | 339 | consensus | 99.05 | |
KOG2777 | 542 | consensus | 98.3 | |
KOG4334 | 650 | consensus | 98.15 | |
KOG3792 | 816 | consensus | 92.3 | |
KOG3792 | 816 | consensus | 91.45 | |
KOG2334 | 477 | consensus | 95.2 |
>TIGR02191 RNaseIII ribonuclease III; InterPro: IPR011907 This family consists almost exclusively of bacterial examples of ribonuclease III (RNase III) | Back alignment and domain information |
---|
>PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
---|
>PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
---|
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
---|
>PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
---|
>KOG1817 consensus | Back alignment and domain information |
---|
>KOG3769 consensus | Back alignment and domain information |
---|
>KOG0701 consensus | Back alignment and domain information |
---|
>smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
---|
>cd00593 RIBOc RIBOc | Back alignment and domain information |
---|
>pfam00636 Ribonuclease_3 RNase3 domain | Back alignment and domain information |
---|
>KOG0701 consensus | Back alignment and domain information |
---|
>KOG1817 consensus | Back alignment and domain information |
---|
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
---|
>cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
---|
>smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
---|
>KOG3732 consensus | Back alignment and domain information |
---|
>pfam00035 dsrm Double-stranded RNA binding motif | Back alignment and domain information |
---|
>KOG3732 consensus | Back alignment and domain information |
---|
>KOG2777 consensus | Back alignment and domain information |
---|
>KOG4334 consensus | Back alignment and domain information |
---|
>KOG3792 consensus | Back alignment and domain information |
---|
>KOG3792 consensus | Back alignment and domain information |
---|
>KOG2334 consensus | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 2e-35 | |
1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 1e-31 | |
1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 1e-28 | |
1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 1e-28 | |
1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 1e-28 | |
1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 1e-28 | |
2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (D4 | 8e-28 | |
3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-23 | |
3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-22 | |
2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 7e-17 | |
3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 2e-17 | |
3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 2e-17 | |
1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 2e-14 | |
1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 2e-14 | |
2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 5e-15 | |
2khx_A | 85 | Drosha Double-Stranded Rna Binding Motif Length = 8 | 1e-07 | |
2l3j_A | 236 | The Solution Structure Of The Adar2 Dsrbm-Rna Compl | 2e-07 | |
2l3j_A | 236 | The Solution Structure Of The Adar2 Dsrbm-Rna Compl | 1e-05 | |
2l3c_A | 74 | Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna | 2e-07 | |
2b7t_A | 73 | Structure Of Adar2 Dsrbm1 Length = 73 | 2e-07 | |
1uhz_A | 89 | Solution Structure Of Dsrna Binding Domain In Stauf | 3e-07 | |
2cpn_A | 89 | Solution Structure Of The Second Dsrbd Of Tar Rna-B | 4e-07 | |
1x49_A | 97 | Solution Structure Of The First Dsrm Domain In Inte | 5e-07 | |
3adl_A | 88 | Structure Of Trbp2 And Its Molecule Implications Fo | 1e-06 | |
2dmy_A | 97 | Solution Structure Of Dsrm Domain In Spermatid Peri | 5e-06 | |
1x48_A | 88 | Solution Structure Of The Second Dsrm Domain In Int | 7e-06 | |
1di2_A | 69 | Crystal Structure Of A Dsrna-Binding Domain Complex | 1e-05 | |
2b7v_A | 71 | Structure Of Adar2 Dsrbm2 Length = 71 | 1e-05 | |
1x47_A | 98 | Solution Structure Of Dsrm Domain In Dgcr8 Protein | 3e-04 | |
2yt4_A | 232 | Crystal Structure Of Human Dgcr8 Core Length = 232 | 8e-04 | |
2dix_A | 84 | Solution Structure Of The Dsrm Domain Of Protein Ac | 9e-04 | |
1qu6_A | 179 | Structure Of The Double-Stranded Rna-Binding Domain | 0.001 | |
2l2n_A | 103 | Backbone 1h, 13c, And 15n Chemical Shift Assignment | 0.002 | |
3adg_A | 73 | Structure Of Arabidopsis Hyl1 And Its Molecular Imp | 0.002 |
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 25 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 80 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 81 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 140 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 141 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 201 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 |
>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing Length = 221 | Back alignment and structure |
>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
>gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
>gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
>gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
>gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif Length = 85 | Back alignment and structure |
>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex Reveals A Sequence-Specific Read Out Of The Minor Groove Length = 236 | Back alignment and structure |
>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex Reveals A Sequence-Specific Read Out Of The Minor Groove Length = 236 | Back alignment and structure |
>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna Length = 74 | Back alignment and structure |
>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1 Length = 73 | Back alignment and structure |
>gi|159163148|pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen Homolog 2 Length = 89 | Back alignment and structure |
>gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding Protein 2 Length = 89 | Back alignment and structure |
>gi|159163524|pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 97 | Back alignment and structure |
>gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna P Length = 88 | Back alignment and structure |
>gi|159164237|pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid Perinuclear Rna-Bind Protein Length = 97 | Back alignment and structure |
>gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 88 | Back alignment and structure |
>gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions Length = 69 | Back alignment and structure |
>gi|93278802|pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2 Length = 71 | Back alignment and structure |
>gi|159163522|pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein Length = 98 | Back alignment and structure |
>gi|159795592|pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core Length = 232 | Back alignment and structure |
>gi|159164135|pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator Of The Interferon-Induced Protein Kinase Length = 84 | Back alignment and structure |
>gi|159162913|pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of The Protein Kinase Pkr Reveals The Molecular Basis Of Its Dsrna-Mediated Activation Length = 179 | Back alignment and structure |
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103 | Back alignment and structure |
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing Length = 73 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III, IDP | 1e-51 | |
1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural genomic | 4e-48 | |
3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding protein, A | 2e-34 | |
2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interference, e | 6e-34 | |
2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, structura | 7e-32 | |
3o2r_A | 170 | Ribonuclease III; structural genomics, center for struc | 5e-33 | |
2gsl_A | 137 | Hypothetical protein; alpha-helical protein, structural | 3e-19 | |
1u61_A | 138 | Hypothetical protein; structural genomics, PSI, protein | 2e-17 | |
2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin | 2e-04 | |
2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrolase, | 2e-17 | |
3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA binding p | 4e-15 | |
3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA proce | 1e-14 | |
1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution stru | 5e-14 | |
1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; protein- | 4e-13 | |
2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, | 8e-13 | |
3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism, RNA | 8e-13 | |
2l33_A | 91 | Interleukin enhancer-binding factor 3; structural genom | 1e-12 | |
2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA binding p | 2e-12 | |
2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA binding p | 8e-07 | |
1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; | 2e-12 | |
1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); structure, | 3e-12 | |
2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editing, RN | 4e-12 | |
1x49_A | 97 | Interferon-induced, double-stranded RNA- activated prot | 9e-12 | |
2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM domain, | 2e-11 | |
2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editing, RN | 1e-10 | |
1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {S | 2e-10 | |
2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, dsRNA | 5e-10 | |
1x48_A | 88 | Interferon-induced, double-stranded RNA- activated prot | 5e-09 | |
1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double-stra | 5e-09 | |
2dix_A | 84 | Interferon-inducible double stranded RNA- dependent pro | 5e-09 | |
1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, NPPSFA | 2e-08 | |
2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA binding | 2e-08 | |
1uil_A | 113 | Double-stranded RNA-binding motif; structural genomics, | 4e-08 | |
1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain, DSR | 6e-08 | |
1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, staufen | 7e-08 | |
1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution stru | 4e-08 | |
2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, dsRNA | 8e-10 |
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
---|
Score = 198 bits (504), Expect = 1e-51 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ + Y F +++LL ALTH S + ERLEFLGD +L L++ LF+ F Sbjct: 29 EKLEQSLTYEFKDKNLLIHALTHKS--FKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 86 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A+ Sbjct: 87 AEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAI 146 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ GPD Sbjct: 147 HLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 206 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 207 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 |
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
---|
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
---|
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
---|
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
---|
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
---|
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein structure initiative; 2.60A {Fusobacterium nucleatum subsp} Length = 137 | Back alignment and structure |
---|
>1u61_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Length = 138 | Back alignment and structure |
---|
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
---|
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
---|
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
---|
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 | Back alignment and structure |
---|
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
---|
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 | Back alignment and structure |
---|
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 | Back alignment and structure |
---|
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 | Back alignment and structure |
---|
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
---|
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
---|
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
---|
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B Length = 117 | Back alignment and structure |
---|
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
---|
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 Length = 73 | Back alignment and structure |
---|
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
---|
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
---|
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 Length = 71 | Back alignment and structure |
---|
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94 | Back alignment and structure |
---|
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 | Back alignment and structure |
---|
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88 | Back alignment and structure |
---|
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 | Back alignment and structure |
---|
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
---|
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 | Back alignment and structure |
---|
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
---|
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 Length = 113 | Back alignment and structure |
---|
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 Length = 99 | Back alignment and structure |
---|
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
---|
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
---|
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural genomic | 100.0 | |
3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III, IDP | 100.0 | |
2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, structura | 100.0 | |
2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interference, e | 100.0 | |
3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding protein, A | 100.0 | |
3o2r_A | 170 | Ribonuclease III; structural genomics, center for struc | 100.0 | |
2gsl_A | 137 | Hypothetical protein; alpha-helical protein, structural | 99.9 | |
2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin | 99.27 | |
1u61_A | 138 | Hypothetical protein; structural genomics, PSI, protein | 99.9 | |
2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin | 99.48 | |
2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrolase, | 99.74 | |
1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, staufen | 99.69 | |
2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA binding | 99.67 | |
3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA binding p | 99.67 | |
1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double-stra | 99.66 | |
3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA proce | 99.66 | |
1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; protein- | 99.64 | |
2dix_A | 84 | Interferon-inducible double stranded RNA- dependent pro | 99.61 | |
1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, NPPSFA | 99.61 | |
1uil_A | 113 | Double-stranded RNA-binding motif; structural genomics, | 99.6 | |
2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, | 99.59 | |
1x49_A | 97 | Interferon-induced, double-stranded RNA- activated prot | 99.59 | |
1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; | 99.59 | |
2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA binding p | 99.57 | |
1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {S | 99.57 | |
3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism, RNA | 99.57 | |
1x48_A | 88 | Interferon-induced, double-stranded RNA- activated prot | 99.56 | |
1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain, DSR | 99.54 | |
1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution stru | 99.52 | |
1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); structure, | 99.51 | |
2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editing, RN | 99.45 | |
2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM domain, | 99.4 | |
2l33_A | 91 | Interleukin enhancer-binding factor 3; structural genom | 99.37 | |
1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution stru | 99.33 | |
2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editing, RN | 99.29 | |
2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, dsRNA | 99.22 | |
2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA binding p | 99.14 | |
2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, dsRNA | 99.08 | |
3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-RNA co | 97.22 | |
2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics, NPP | 92.8 | |
2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, helica | 90.94 |
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=409.13 Aligned_cols=221 Identities=32% Similarity=0.421 Sum_probs=204.8 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 5889999983696589899998424612126-------676654778874586886454787764104688789988888 Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 (227) Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~ 76 (227) ..+++||++|||+|+|++||.+||||+||.. ....||||||||||+||+++|++|||.+||+.+||.||.+|+ T Consensus 19 ~~i~~le~~igy~F~n~~lL~~AlTH~S~~~~~~~~~~~~~~~~eRLEfLGDavL~~~v~~~l~~~~p~~~eg~lt~~r~ 98 (252) T 1o0w_A 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS 98 (252) T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 99999999969843999999998067063444434334677547899998999999999999998688887131299999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC--CCCC Q ss_conf 88744334545431387720010366312375313333326699999999641554220012210256431110--0013 Q gi|254780940|r 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFR 154 (227) Q Consensus 77 ~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~--~~~~ 154 (227) .+|||++|+.+|..+||++|++.+++...+....+++++||+|||+|||||+|+|++.|+.|+.+++.+.+... .... T Consensus 99 ~lv~~~~La~~a~~l~l~~~l~~~~~~~~~~~~~~~k~laD~fEAliGAiylD~g~~~~~~~v~~l~~~~l~~~~~~~~~ 178 (252) T 1o0w_A 99 AAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML 178 (252) T ss_dssp HHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCC T ss_pred HHCCHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 98187879999997377998762870433377643348878999999999981680465899999999999887644300 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) .|||+.||||||+.+...|+|+++..+||+|.+.|.|+|+++|+.+|+|.|+|||+||+.||++||++|. T Consensus 179 ~dpk~~L~e~~q~~~~~~p~y~~~~~~g~~~~~~f~v~v~i~~~~~~~G~G~SKK~Ae~~AA~~AL~~L~ 248 (252) T 1o0w_A 179 FDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL 248 (252) T ss_dssp SCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH T ss_conf 6755501787776405788558875116999951899999999999998848999999999999999998 |
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
---|
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
---|
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
---|
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
---|
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
---|
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein structure initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
---|
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
---|
>1u61_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
---|
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
---|
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
---|
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
---|
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
---|
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
---|
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
---|
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
---|
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
---|
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
---|
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B | Back alignment and structure |
---|
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
---|
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
---|
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
---|
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
---|
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
---|
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
---|
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
---|
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
---|
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
---|
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
---|
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
---|
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
---|
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
---|
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
---|
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
---|
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
---|
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
227 | ribonuclease III [Candidatus Liberibacter asiaticus str | |||
d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease catalytic d | 7e-25 | |
d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalytic do | 2e-20 | |
d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus ce | 7e-18 | |
d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain {Ther | 2e-15 | |
d1t4oa_ | 81 | d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yea | 4e-13 | |
d2nuga2 | 68 | d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aqui | 5e-13 | |
d2b7ta1 | 73 | d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus | 1e-12 | |
d2dmya1 | 84 | d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding pro | 2e-12 | |
d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [ | 2e-11 | |
d1qu6a1 | 90 | d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {H | 2e-11 | |
d2b7va1 | 71 | d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus | 4e-11 | |
d1x49a1 | 85 | d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {M | 2e-10 | |
d1di2a_ | 69 | d.50.1.1 (A:) Double-stranded RNA-binding protein A, se | 4e-10 | |
d2cpna1 | 76 | d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human ( | 5e-10 | |
d1uila_ | 113 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse | 6e-10 | |
d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophil | 8e-10 | |
d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stranded | 4e-09 | |
d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2 | 5e-09 | |
d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {M | 7e-09 | |
d1whqa_ | 99 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse | 1e-08 | |
d1uhza_ | 89 | d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [ | 4e-08 | |
d1qu6a2 | 89 | d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr | 2e-06 |
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336] Score = 107 bits (268), Expect = 7e-25 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 7/145 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 14 FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 73 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD E+ Sbjct: 74 KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 133 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR 146 L+AA+YLD G E ++ ++ Sbjct: 134 LLAAIYLDQGYEKIKELFEQEFEFY 158 |
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
---|
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
---|
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
---|
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
---|
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 | Back information, alignment and structure |
---|
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 | Back information, alignment and structure |
---|
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
---|
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
---|
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
---|
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
---|
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
---|
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 | Back information, alignment and structure |
---|
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
---|
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 | Back information, alignment and structure |
---|
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
---|
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
---|
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
---|
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
---|
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
---|
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
---|
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotoga mar | 100.0 | |
d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex aeolic | 100.0 | |
d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxId: 13 | 99.89 | |
d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima [TaxI | 99.73 | |
d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: | 99.68 | |
d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | 99.68 | |
d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [TaxId: | 99.67 | |
d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus | 99.63 | |
d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sapiens | 99.63 | |
d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRBD {Xe | 99.63 | |
d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus musculus | 99.62 | |
d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04R | 99.62 | |
d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent prot | 99.61 | |
d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus | 99.58 | |
d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sapiens | 99.57 | |
d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Saccharomy | 99.56 | |
d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus musculus | 99.54 | |
d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanogaster | 99.54 | |
d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human (Homo | 99.46 | |
d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxI | 99.45 | |
d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxI | 99.31 |
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
---|
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
---|
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
---|
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
---|
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
---|
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
---|
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
---|
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
---|
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
---|
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticu | ||
2a11_A_ | 242 | (A:) Ribonuclease III, RNAse III; nuclease domain, | 1e-29 | |
1o0w_A_1-177 | 177 | (A:1-177) Ribonuclease III, RNAse III; TM1102, str | 1e-26 | |
3c4b_A_1-199 | 199 | (A:1-199) Endoribonuclease dicer; RNAse, dsRNA bin | 1e-26 | |
2nug_A_1-148 | 148 | (A:1-148) Ribonuclease III, RNAse III; dsRNA, RNA | 2e-26 | |
2qvw_A_607-756 | 150 | (A:607-756) GLP_546_48378_50642; dicer, RNAI,pseud | 3e-24 | |
2gsl_A_ | 137 | (A:) Hypothetical protein; alpha-helical protein, | 3e-21 | |
2qvw_A_328-440 | 113 | (A:328-440) GLP_546_48378_50642; dicer, RNAI,pseud | 2e-20 | |
1u61_A_ | 138 | (A:) Hypothetical protein; structural genomics, PS | 1e-17 | |
1whn_A_ | 128 | (A:) Hypothetical protein riken cDNA 2310016K04; d | 2e-16 | |
1o0w_A_178-252 | 75 | (A:178-252) Ribonuclease III, RNAse III; TM1102, s | 1e-15 | |
2nug_A_149-221 | 73 | (A:149-221) Ribonuclease III, RNAse III; dsRNA, RN | 2e-15 | |
1t4o_A_ | 117 | (A:) Ribonuclease III; RNT1P, DSRBD, RNA-binding, | 2e-15 | |
1qu6_A_1-92 | 92 | (A:1-92) Protein kinase PKR; dsRNA-binding domain, | 2e-15 | |
1x49_A_ | 97 | (A:) Interferon-induced, double-stranded RNA- acti | 3e-15 | |
1x48_A_ | 88 | (A:) Interferon-induced, double-stranded RNA- acti | 4e-15 | |
1t4n_A_ | 94 | (A:) Ribonuclease III; DSRBD, RNA-binding, hydrola | 5e-15 | |
1qu6_A_93-179 | 87 | (A:93-179) Protein kinase PKR; dsRNA-binding domai | 9e-15 | |
2b7t_A_ | 73 | (A:) Double-stranded RNA-specific editase 1; RNA e | 9e-15 | |
1uil_A_ | 113 | (A:) Double-stranded RNA-binding motif; structural | 1e-14 | |
1uhz_A_ | 89 | (A:) Staufen (RNA binding protein) homolog 2; DSRM | 1e-14 | |
1ekz_A_ | 76 | (A:) DSRBDIII, maternal effect protein (staufen); | 2e-14 | |
1di2_A_ | 69 | (A:) XLRBPA, double stranded RNA binding protein A | 2e-14 | |
2yt4_A_22-104 | 83 | (A:22-104) Protein DGCR8; DSRBD, RNA binding domai | 2e-14 | |
2dix_A_ | 84 | (A:) Interferon-inducible double stranded RNA- dep | 5e-14 | |
2cpn_A_ | 89 | (A:) TAR RNA-binding protein 2; double-stranded RN | 6e-14 | |
2dmy_A_ | 97 | (A:) Spermatid perinuclear RNA-binding protein; DS | 7e-14 | |
2b7v_A_ | 71 | (A:) Double-stranded RNA-specific editase 1; RNA e | 7e-14 | |
1x47_A_ | 98 | (A:) DGCR8 protein; structural genomics, DSRM doma | 1e-13 | |
1whq_A_ | 99 | (A:) RNA helicase A; double-stranded RNA binding d | 2e-13 | |
2khx_A_29-85 | 57 | (A:29-85) Ribonuclease 3; drosha, RNA binding doma | 6e-10 |
>2a11_A (A:) Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis}Length = 242 | Back alignment and structure |
---|
Score = 124 bits (311), Expect = 1e-29 Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ Sbjct: 7 RQPLLDALGVDLPDE-LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRH 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---TSIQADVVE 120 EG+L+ S+V+ + + VAR L R + + +SI AD +E Sbjct: 66 PDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGME 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF 179 SL+ A+YL G+E A + + + + + A G+ + Sbjct: 126 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GPDHD FT VV + G+ SK+ AEQ AAA K Sbjct: 186 STGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKA 228 |
>1o0w_A (A:1-177) Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima}Length = 177 | Back alignment and structure |
---|
>3c4b_A (A:1-199) Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_ALength = 199 | Back alignment and structure |
---|
>2nug_A (A:1-148) Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus}Length = 148 | Back alignment and structure |
---|
>2qvw_A (A:607-756) GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_ALength = 150 | Back alignment and structure |
---|
>2gsl_A (A:) Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein structure initiative; 2.60A {Fusobacterium nucleatum subsp}Length = 137 | Back alignment and structure |
---|
>2qvw_A (A:328-440) GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_ALength = 113 | Back alignment and structure |
---|
>1u61_A (A:) Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.15A {Bacillus cereus}Length = 138 | Back alignment and structure |
---|
>1whn_A (A:) Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}Length = 128 | Back alignment and structure |
---|
>1o0w_A (A:178-252) Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima}Length = 75 | Back alignment and structure |
---|
>2nug_A (A:149-221) Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus}Length = 73 | Back alignment and structure |
---|
>1t4o_A (A:) Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae}Length = 117 | Back alignment and structure |
---|
>1qu6_A (A:1-92) Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens}Length = 92 | Back alignment and structure |
---|
>1x49_A (A:) Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus}Length = 97 | Back alignment and structure |
---|
>1x48_A (A:) Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus}Length = 88 | Back alignment and structure |
---|
>1t4n_A (A:) Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae}Length = 94 | Back alignment and structure |
---|
>1qu6_A (A:93-179) Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens}Length = 87 | Back alignment and structure |
---|
>2b7t_A (A:) Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus}Length = 73 | Back alignment and structure |
---|
>1uil_A (A:) Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus}Length = 113 | Back alignment and structure |
---|
>1uhz_A (A:) Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}Length = 89 | Back alignment and structure |
---|
>1ekz_A (A:) DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster}Length = 76 | Back alignment and structure |
---|
>1di2_A (A:) XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis}Length = 69 | Back alignment and structure |
---|
>2yt4_A (A:22-104) Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}Length = 83 | Back alignment and structure |
---|
>2dix_A (A:) Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens}Length = 84 | Back alignment and structure |
---|
>2cpn_A (A:) TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens}Length = 89 | Back alignment and structure |
---|
>2dmy_A (A:) Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}Length = 97 | Back alignment and structure |
---|
>2b7v_A (A:) Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus}Length = 71 | Back alignment and structure |
---|
>1x47_A (A:) DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}Length = 98 | Back alignment and structure |
---|
>1whq_A (A:) RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus}Length = 99 | Back alignment and structure |
---|
>2khx_A (A:29-85) Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens}Length = 57 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 227 | ribonuclease III [Candidatus Liberibacter asiaticus str | ||
2a11_A_ | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 100.0 | |
3c4b_A_1-199 | 199 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 100.0 | |
2nug_A_1-148 | 148 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 100.0 | |
1o0w_A_1-177 |