254780949
tyrosyl-tRNA synthetase
GeneID in NCBI database: | 8209971 | Locus tag: | CLIBASIA_04240 |
Protein GI in NCBI database: | 254780949 | Protein Accession: | YP_003065362.1 |
Gene range: | -(943428, 944684) | Protein Length: | 418aa |
Gene description: | tyrosyl-tRNA synthetase | ||
COG prediction: | [J] Tyrosyl-tRNA synthetase | ||
KEGG prediction: | tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] | ||
SEED prediction: | Tyrosyl-tRNA synthetase (EC 6.1.1.1), cluster 1 | ||
Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
Subsystem involved in SEED: | tRNA aminoacylation, Tyr | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | |||
315122362 | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter solana | 1 | 0.0 | |
49474204 | 417 | tyrosyl-tRNA synthetase [Bartonella quintana str. Toulo | 1 | 1e-150 | |
49475630 | 417 | tyrosyl-tRNA synthetase [Bartonella henselae str. Houst | 1 | 1e-150 | |
319404228 | 417 | Tyrosyl-tRNA synthetase [Bartonella rochalimae ATCC BAA | 1 | 1e-149 | |
319407238 | 417 | Tyrosyl-tRNA synthetase [Bartonella sp. 1-1C] Length = | 1 | 1e-149 | |
241204833 | 418 | tyrosyl-tRNA synthetase [Rhizobium leguminosarum bv. tr | 1 | 1e-148 | |
163868345 | 417 | tyrosyl-tRNA synthetase [Bartonella tribocorum CIP 1054 | 1 | 1e-148 | |
240850610 | 417 | tyrosyl-tRNA synthetase [Bartonella grahamii as4aup] Le | 1 | 1e-148 | |
153009590 | 417 | tyrosyl-tRNA synthetase [Ochrobactrum anthropi ATCC 491 | 1 | 1e-148 | |
209549500 | 418 | tyrosyl-tRNA synthetase [Rhizobium leguminosarum bv. tr | 1 | 1e-148 |
>gi|315122362|ref|YP_004062851.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 418 | Back alignment and organism information |
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Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/417 (79%), Positives = 380/417 (91%) Query: 1 MPAFKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLL 60 M FKSDFL+ILSERGFIHQISNP+ELD LC +TAYIGYD TASSLH GHLTQLM+L Sbjct: 1 MSVFKSDFLNILSERGFIHQISNPQELDKLCYNSTITAYIGYDPTASSLHVGHLTQLMML 60 Query: 61 FWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGK 120 FWLQKTGH+PISLMGGGT +IGDPSF E+RRM+ QEIQ+NI+ IK IFS+FI+YGTGK Sbjct: 61 FWLQKTGHRPISLMGGGTGMIGDPSFISEARRMIGVQEIQKNIKSIKDIFSAFIRYGTGK 120 Query: 121 TDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQ 180 DALMLNN+ WL IKYID LRE+GS FSVNRMLSF+SVRSRL+REQSLSFLEFNYMILQ Sbjct: 121 NDALMLNNDAWLSPIKYIDFLREVGSCFSVNRMLSFDSVRSRLQREQSLSFLEFNYMILQ 180 Query: 181 AYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKT 240 AYDFVEL+KNYDCRLQMGGSDQWGN+ICGI+LG RLKTP+LFALTSPLLTT+SG KMGKT Sbjct: 181 AYDFVELSKNYDCRLQMGGSDQWGNMICGIELGGRLKTPQLFALTSPLLTTSSGAKMGKT 240 Query: 241 LSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKK 300 +GAIWLNKEMTSPY+FWQYWRNIDDADVV+FAKRLTTLP+SEI R+ KLQ KE+NEAKK Sbjct: 241 AAGAIWLNKEMTSPYDFWQYWRNIDDADVVNFAKRLTTLPISEIHRIEKLQEKELNEAKK 300 Query: 301 IIATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSRGMGLLTLIVKAG 360 IIATEITTMVHG+ EAEKAATAAMECFDM+++S++MPTISISK E+++G+G+LTLIVKAG Sbjct: 301 IIATEITTMVHGKAEAEKAATAAMECFDMNMYSENMPTISISKAEINQGIGILTLIVKAG 360 Query: 361 FATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICHLC 417 FA ST+EARRH++SNAIK+N+++ISNEK I+L+DFDS G IKLSFGKK HIIC +C Sbjct: 361 FAVSTSEARRHIQSNAIKVNDNVISNEKAHIELKDFDSAGVIKLSFGKKRHIICQVC 417 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|49474204|ref|YP_032246.1| tyrosyl-tRNA synthetase [Bartonella quintana str. Toulouse] Length = 417 | Back alignment and organism information |
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>gi|49475630|ref|YP_033671.1| tyrosyl-tRNA synthetase [Bartonella henselae str. Houston-1] Length = 417 | Back alignment and organism information |
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>gi|319404228|emb|CBI77821.1| Tyrosyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498] Length = 417 | Back alignment and organism information |
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>gi|319407238|emb|CBI80877.1| Tyrosyl-tRNA synthetase [Bartonella sp. 1-1C] Length = 417 | Back alignment and organism information |
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>gi|241204833|ref|YP_002975929.1| tyrosyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 418 | Back alignment and organism information |
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>gi|163868345|ref|YP_001609554.1| tyrosyl-tRNA synthetase [Bartonella tribocorum CIP 105476] Length = 417 | Back alignment and organism information |
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>gi|240850610|ref|YP_002972010.1| tyrosyl-tRNA synthetase [Bartonella grahamii as4aup] Length = 417 | Back alignment and organism information |
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>gi|153009590|ref|YP_001370805.1| tyrosyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] Length = 417 | Back alignment and organism information |
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>gi|209549500|ref|YP_002281417.1| tyrosyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 418 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | ||
PRK05912 | 408 | PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated | 1e-151 | |
PRK13354 | 410 | PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisiona | 1e-126 | |
TIGR00234 | 377 | TIGR00234, tyrS, tyrosyl-tRNA synthetase | 2e-84 | |
KOG2623 | 467 | KOG2623, KOG2623, KOG2623, Tyrosyl-tRNA synthetase [Tra | 2e-81 | |
COG0162 | 401 | COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ri | 1e-112 | |
cd00805 | 269 | cd00805, TyrRS_core, catalytic core domain of tyrosinyl | 6e-82 | |
cd00395 | 273 | cd00395, Tyr_Trp_RS_core, catalytic core domain of tyro | 4e-61 | |
pfam00579 | 291 | pfam00579, tRNA-synt_1b, tRNA synthetases class I (W an | 1e-60 | |
cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain of cl | 2e-07 | |
cd00165 | 70 | cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding domain | 9e-04 | |
pfam01479 | 48 | pfam01479, S4, S4 domain | 0.002 | |
smart00363 | 60 | smart00363, S4, S4 RNA-binding domain | 0.004 |
>gnl|CDD|180311 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
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>gnl|CDD|183993 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|161781 TIGR00234, tyrS, tyrosyl-tRNA synthetase | Back alignment and domain information |
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>gnl|CDD|37834 KOG2623, KOG2623, KOG2623, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|30511 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
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>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
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>gnl|CDD|144245 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) | Back alignment and domain information |
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>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
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>gnl|CDD|29105 cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes | Back alignment and domain information |
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>gnl|CDD|144902 pfam01479, S4, S4 domain | Back alignment and domain information |
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>gnl|CDD|128657 smart00363, S4, S4 RNA-binding domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | ||
PRK05912 | 402 | tyrosyl-tRNA synthetase; Validated | 100.0 | |
PRK13354 | 405 | tyrosyl-tRNA synthetase; Provisional | 100.0 | |
KOG2623 | 467 | consensus | 100.0 | |
COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal st | 100.0 | |
TIGR00234 | 422 | tyrS tyrosyl-tRNA synthetase; InterPro: IPR002307 The a | 100.0 | |
cd00805 | 268 | TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic | 100.0 | |
pfam00579 | 291 | tRNA-synt_1b tRNA synthetases class I (W and Y). | 100.0 | |
cd00395 | 274 | Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Trypt | 100.0 | |
PRK08560 | 333 | tyrosyl-tRNA synthetase; Validated | 100.0 | |
cd00806 | 282 | TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalyt | 100.0 | |
PTZ00126 | 399 | tyrosyl-tRNA synthetase; Provisional | 99.97 | |
PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 99.9 | |
PRK12285 | 369 | tryptophanyl-tRNA synthetase; Reviewed | 99.89 | |
PRK00927 | 325 | tryptophanyl-tRNA synthetase; Reviewed | 99.88 | |
COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ribosom | 99.85 | |
PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 99.84 | |
PRK12556 | 328 | tryptophanyl-tRNA synthetase; Provisional | 99.84 | |
KOG2144 | 360 | consensus | 99.82 | |
PRK12284 | 436 | tryptophanyl-tRNA synthetase; Reviewed | 99.82 | |
TIGR00233 | 366 | trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 | 99.77 | |
KOG2713 | 347 | consensus | 99.47 | |
KOG2145 | 397 | consensus | 99.11 | |
cd00802 | 142 | class_I_aaRS_core Class I amino acyl-tRNA synthetase (a | 99.8 | |
PRK00750 | 513 | lysK lysyl-tRNA synthetase; Reviewed | 98.13 | |
cd00674 | 354 | LysRS_core_class_I This is the catalytic core domain of | 97.97 | |
pfam01921 | 355 | tRNA-synt_1f tRNA synthetases class I (K). This family | 97.73 | |
cd02156 | 147 | nt_trans nt_trans (nucleotidyl transferase) This superf | 96.96 | |
COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, ribo | 96.63 | |
cd00808 | 239 | GluRS_core Descriminating Glutamyl-tRNA synthetase (Glu | 94.58 | |
cd00668 | 334 | Ile_Leu_Val_MetRS_core This is the catalytic core domai | 98.61 | |
TIGR00392 | 938 | ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The | 97.45 | |
cd00817 | 363 | ValRS_core This is the catalytic core domain of valine | 97.43 | |
PRK00260 | 460 | cysS cysteinyl-tRNA synthetase; Validated | 96.71 | |
cd00812 | 376 | LeuRS_core This is the catalytic core domain of leucyl | 96.69 | |
cd00818 | 339 | IleRS_core This is the catalytic core domain of isoleuc | 96.09 | |
PRK11893 | 512 | methionyl-tRNA synthetase; Reviewed | 92.38 | |
TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deo | 91.05 | |
pfam09334 | 388 | tRNA-synt_1g tRNA synthetases class I (M). This family | 98.26 | |
cd00814 | 319 | MetRS_core This is the catalytic core domain of methion | 97.96 | |
pfam01406 | 301 | tRNA-synt_1e tRNA synthetases class I (C) catalytic dom | 97.78 | |
PRK12267 | 644 | methionyl-tRNA synthetase; Reviewed | 97.29 | |
pfam00133 | 606 | tRNA-synt_1 tRNA synthetases class I (I, L, M and V). O | 97.0 | |
PRK11893 | 512 | methionyl-tRNA synthetase; Reviewed | 96.14 | |
PRK12268 | 558 | methionyl-tRNA synthetase; Reviewed | 93.19 | |
PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 90.42 | |
pfam01479 | 48 | S4 S4 domain. The S4 domain is a small domain consistin | 98.04 | |
smart00363 | 60 | S4 S4 RNA-binding domain. | 97.78 | |
cd00165 | 70 | S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The doma | 97.69 | |
PRK10839 | 231 | 16S rRNA pseudouridylate synthase A; Provisional | 97.2 | |
COG0522 | 205 | RpsD Ribosomal protein S4 and related proteins [Transla | 96.89 | |
COG1187 | 248 | RsuA 16S rRNA uridine-516 pseudouridylate synthase and | 96.56 | |
TIGR00478 | 240 | tly hemolysin A; InterPro: IPR004538 Hemolysins are exo | 96.55 | |
TIGR03069 | 257 | PS_II_S4 photosystem II S4 domain protein. Members of t | 96.39 | |
COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal struct | 96.3 | |
PRK04313 | 237 | 30S ribosomal protein S4e; Validated | 95.92 | |
PRK12565 | 197 | 30S ribosomal protein S4; Provisional | 95.42 | |
PTZ00223 | 273 | 40S ribosomal protein S4; Provisional | 95.37 | |
PTZ00118 | 262 | 40S ribosomal protein S4; Provisional | 95.07 | |
PRK05327 | 201 | rpsD 30S ribosomal protein S4; Validated | 94.7 | |
CHL00113 | 201 | rps4 ribosomal protein S4; Reviewed | 94.68 | |
COG2302 | 257 | Uncharacterized conserved protein, contains S4-like dom | 94.59 | |
TIGR02988 | 60 | YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014 | 94.38 | |
COG1188 | 100 | Ribosome-associated heat shock protein implicated in th | 94.15 | |
PRK11507 | 70 | hypothetical protein; Provisional | 94.0 | |
COG2501 | 73 | S4-like RNA binding protein [Replication, recombination | 93.49 | |
PRK10348 | 133 | ribosome-associated heat shock protein Hsp15; Provision | 92.43 | |
KOG4655 | 181 | consensus | 92.29 | |
TIGR00422 | 970 | valS valyl-tRNA synthetase; InterPro: IPR002303 The ami | 97.23 | |
PRK13804 | 966 | ileS isoleucyl-tRNA synthetase; Provisional | 97.21 | |
PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 96.88 | |
PRK05743 | 910 | ileS isoleucyl-tRNA synthetase; Reviewed | 96.83 | |
PRK13208 | 809 | valS valyl-tRNA synthetase; Reviewed | 96.59 | |
COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribosomal | 96.51 | |
PRK06039 | 1042 | ileS isoleucyl-tRNA synthetase; Reviewed | 96.27 | |
PRK12300 | 888 | leuS leucyl-tRNA synthetase; Reviewed | 94.6 | |
PRK12268 | 558 | methionyl-tRNA synthetase; Reviewed | 92.61 | |
KOG0433 | 937 | consensus | 90.83 | |
PRK04051 | 177 | rps4p 30S ribosomal protein S4; Validated | 97.22 | |
PTZ00155 | 188 | 40S ribosomal protein S9; Provisional | 96.37 | |
cd00672 | 213 | CysRS_core This is the catalytic core domain of cystein | 96.98 | |
cd00418 | 223 | GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-t | 96.61 | |
PRK10475 | 290 | 23S rRNA pseudouridine synthase F; Provisional | 96.27 | |
PRK10700 | 291 | 23S rRNA pseudouridylate synthase B; Provisional | 95.16 | |
TIGR01018 | 170 | rpsD_arch ribosomal protein S4; InterPro: IPR005710 Rib | 95.88 | |
TIGR01017 | 217 | rpsD_bact ribosomal protein S4; InterPro: IPR005709 Rib | 95.41 | |
PRK05729 | 877 | valS valyl-tRNA synthetase; Reviewed | 95.18 | |
COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal stru | 95.09 | |
PRK11180 | 325 | rluD 23S rRNA pseudouridine synthase D; Provisional | 93.06 | |
PRK11025 | 317 | 23S rRNA pseudouridylate synthase C; Provisional | 91.67 |
>PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
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>PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>KOG2623 consensus | Back alignment and domain information |
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>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00234 tyrS tyrosyl-tRNA synthetase; InterPro: IPR002307 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain | Back alignment and domain information |
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>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y) | Back alignment and domain information |
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>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain | Back alignment and domain information |
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>PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
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>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain | Back alignment and domain information |
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>PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
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>PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>KOG2144 consensus | Back alignment and domain information |
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>PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>KOG2713 consensus | Back alignment and domain information |
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>KOG2145 consensus | Back alignment and domain information |
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>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain | Back alignment and domain information |
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>PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS) | Back alignment and domain information |
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>pfam01921 tRNA-synt_1f tRNA synthetases class I (K) | Back alignment and domain information |
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>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain | Back alignment and domain information |
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>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain | Back alignment and domain information |
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>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
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>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) | Back alignment and domain information |
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>PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
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>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS) | Back alignment and domain information |
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>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) | Back alignment and domain information |
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>PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
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>pfam09334 tRNA-synt_1g tRNA synthetases class I (M) | Back alignment and domain information |
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>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS) | Back alignment and domain information |
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>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
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>PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
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>PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>pfam01479 S4 S4 domain | Back alignment and domain information |
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>smart00363 S4 S4 RNA-binding domain | Back alignment and domain information |
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>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes | Back alignment and domain information |
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>PRK10839 16S rRNA pseudouridylate synthase A; Provisional | Back alignment and domain information |
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>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture | Back alignment and domain information |
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>TIGR03069 PS_II_S4 photosystem II S4 domain protein | Back alignment and domain information |
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>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK04313 30S ribosomal protein S4e; Validated | Back alignment and domain information |
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>PRK12565 30S ribosomal protein S4; Provisional | Back alignment and domain information |
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>PTZ00223 40S ribosomal protein S4; Provisional | Back alignment and domain information |
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>PTZ00118 40S ribosomal protein S4; Provisional | Back alignment and domain information |
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>PRK05327 rpsD 30S ribosomal protein S4; Validated | Back alignment and domain information |
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>CHL00113 rps4 ribosomal protein S4; Reviewed | Back alignment and domain information |
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>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown] | Back alignment and domain information |
---|
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014330 This small protein has a single S4 domain (IPR002942 from INTERPRO); it is also found in bacterial S4 ribosomal proteins, some pseudouridine synthases and tyrosyl-tRNA synthetases | Back alignment and domain information |
---|
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK11507 hypothetical protein; Provisional | Back alignment and domain information |
---|
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair] | Back alignment and domain information |
---|
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional | Back alignment and domain information |
---|
>KOG4655 consensus | Back alignment and domain information |
---|
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
>PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>KOG0433 consensus | Back alignment and domain information |
---|
>PRK04051 rps4p 30S ribosomal protein S4; Validated | Back alignment and domain information |
---|
>PTZ00155 40S ribosomal protein S9; Provisional | Back alignment and domain information |
---|
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS) | Back alignment and domain information |
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>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain | Back alignment and domain information |
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>PRK10475 23S rRNA pseudouridine synthase F; Provisional | Back alignment and domain information |
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>PRK10700 23S rRNA pseudouridylate synthase B; Provisional | Back alignment and domain information |
---|
>TIGR01018 rpsD_arch ribosomal protein S4; InterPro: IPR005710 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
---|
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
---|
>PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional | Back alignment and domain information |
---|
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | ||
2ts1_A | 419 | Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3 | 1e-105 | |
1jii_A | 420 | Crystal Structure Of S. Aureus Tyrrs In Complex Wit | 1e-99 | |
2jan_A | 432 | Tyrosyl-Trna Synthetase From Mycobacterium Tubercul | 5e-95 | |
1h3f_A | 432 | Tyrosyl-Trna Synthetase From Thermus Thermophilus C | 7e-76 | |
1x8x_A | 322 | Tyrosyl T-Rna Synthetase From E.Coli Complexed With | 4e-82 | |
1vbm_A | 318 | Crystal Structure Of The Escherichia Coli Tyrosyl-T | 1e-81 | |
1wq4_A | 321 | Escherichia Coli Tyrosyl-Trna Synthetase Mutant Com | 9e-80 | |
1wq3_A | 322 | Escherichia Coli Tyrosyl-Trna Synthetase Mutant Com | 9e-80 | |
1vbn_A | 318 | Escherichia Coli Tyrosyl-Trna Synthetase Mutant Com | 3e-79 | |
1tyc_A | 319 | Structural Analysis Of A Series Of Mutants Of Tyros | 4e-79 | |
4ts1_A | 319 | Crystal Structure Of A Deletion Mutant Of A Tyrosyl | 8e-79 | |
1tya_E | 319 | Structural Analysis Of A Series Of Mutants Of Tyros | 2e-78 | |
1tyb_E | 319 | Structural Analysis Of A Series Of Mutants Of Tyros | 2e-78 | |
1tyd_E | 319 | Structure Of Tyrosyl-Trna Synthetase Refined At 2.3 | 2e-78 | |
1y42_X | 392 | Crystal Structure Of A C-Terminally Truncated Cyt-1 | 2e-55 | |
2pid_A | 356 | Crystal Structure Of Human Mitochondrial Tyrosyl-Tr | 5e-53 | |
1j1u_A | 306 | Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta | 3e-23 | |
2zp1_A | 314 | Structual Basis Of Iodo-Tyrosine Recognition By Eng | 2e-22 | |
3qe4_A | 312 | An Evolved Aminoacyl-Trna Synthetase With Atypical | 4e-22 | |
1zh6_A | 314 | Crystal Structure Of P-Acetylphenylalanine-Trna Syn | 4e-21 | |
3n2y_A | 314 | Crystal Structure Of Tyrosyl-Trna Synthetase Comple | 9e-21 | |
2ag6_A | 314 | Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S | 1e-20 | |
1zh0_A | 314 | Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy | 1e-20 | |
1u7x_A | 312 | Crystal Structure Of A Mutant M. Jannashii Tyrosyl- | 2e-20 | |
2hgz_A | 306 | Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trn | 2e-20 | |
3d6u_A | 314 | Crystal Structure Of 4-(Trifluoromethyldiazirinyl) | 5e-20 | |
2pxh_A | 314 | Crystal Structure Of A Bipyridylalanyl-Trna Synthet | 2e-19 | |
2cyc_A | 375 | Crystal Structure Of Tyrosyl-Trna Synthetase Comple | 1e-09 | |
2cyb_A | 323 | Crystal Structure Of Tyrosyl-Trna Synthetase Comple | 4e-24 | |
1n3l_A | 372 | Crystal Structure Of A Human Aminoacyl-Trna Synthet | 1e-06 | |
2dlc_X | 394 | Crystal Structure Of The Ternary Complex Of Yeast T | 7e-06 | |
2quh_A | 477 | Crystal Structures Of Human Tryptophanyl-Trna Synth | 9e-05 | |
1ulh_A | 390 | A Short Peptide Insertion Crucial For Angiostatic A | 2e-04 | |
2quj_B | 384 | Crystal Structures Of Human Tryptophanyl-Trna Synth | 2e-04 | |
2ake_A | 384 | Structure Of Human Tryptophanyl-Trna Synthetase In | 2e-04 | |
1o5t_A | 378 | Crystal Structure Of The Aminoacylation Catalytic F | 2e-04 | |
2j5b_A | 348 | Structure Of The Tyrosyl Trna Synthetase From Acant | 5e-04 | |
2g36_A | 340 | Crystal Structure Of Tryptophanyl-Trna Synthetase ( | 8e-04 | |
2cya_A | 364 | Crystal Structure Of Tyrosyl-Trna Synthetase From A | 2e-18 | |
3a04_A | 372 | Crystal Structure Of Tryptophanyl-Trna Synthetase F | 0.003 | |
1jh3_A | 107 | Solution Structure Of Tyrosyl-Trna Synthetase C-Ter | 3e-18 | |
2ktl_A | 164 | Structure Of C-Terminal Domain From Mttyrrs Of A. N | 1e-04 | |
3foc_A | 451 | Tryptophanyl-Trna Synthetase From Giardia Lamblia L | 5e-05 | |
3p0j_A | 690 | Leishmania Major Tyrosyl-Trna Synthetase In Complex | 5e-04 |
gi|157836396|pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3 Angstroms Resolution. Interaction Of The Enzyme With The Tyrosyl Adenylate Intermediate Length = 419 | Back alignment and structure |
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 153/418 (36%), Positives = 227/418 (54%), Gaps = 11/418 (2%) Query: 7 DFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT 66 D L+ L RG ++Q ++ L L ++ VT Y G+D TA SLH GHL ++ + Q+ Sbjct: 2 DLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61 Query: 67 GHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALML 126 GH+PI+L+GG T +IGDPS + R + + ++ +IK F+ + A + Sbjct: 62 GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIK 121 Query: 127 NNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVE 186 NN W+ + I LR++G FSVN M++ ESV+SR+ E +SF EF+YM+LQAYDF+ Sbjct: 122 NNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI--ETGISFTEFSYMMLQAYDFLR 179 Query: 187 LAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPK-LFALTSPLLTTASGTKMGKTLSGAI 245 L + CRLQ+GGSDQWGNI G++L + K F LT PL+T A GTK GKT SG I Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTI 239 Query: 246 WLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEID--RMAKLQGKEINEAKKIIA 303 WL+KE TSPY F+Q+W N DD DV+ + K T L EI+ + E A+K +A Sbjct: 240 WLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLA 299 Query: 304 TEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEVSR------GMGLLTLIV 357 E+T +VHG E +A + F I + I +V + L+ L+V Sbjct: 300 EEVTKLVHGEEALRQAIRISEALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLV 359 Query: 358 KAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHIICH 415 AG + S +AR +++ AI +N + + + + + GKK + + Sbjct: 360 SAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIR 417 |
gi|16975033|pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb- 219383 Length = 420 | Back alignment and structure |
>gi|167013192|pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In Unliganded State Length = 432 | Back alignment and structure |
gi|24158659|pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus Complexed With Tyrosinol Length = 432 | Back alignment and structure |
>gi|60593980|pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With Tyrosine Length = 322 | Back alignment and structure |
>gi|60593714|pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna Synthetase Complexed With Tyr-Ams Length = 318 | Back alignment and structure |
>gi|60593917|pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed With L-Tyrosine Length = 321 | Back alignment and structure |
>gi|60593916|pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed With 3-Iodo-L-Tyrosine Length = 322 | Back alignment and structure |
>gi|60593716|pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed With Tyr-Ams Length = 318 | Back alignment and structure |
>gi|157834045|pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna Synthetase: Enhancement Of Catalysis By Hydrophobic Interactions Length = 319 | Back alignment and structure |
>gi|231099|pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA Synthetase Complexed With Tyrosine Length = 319 | Back alignment and structure |
>gi|494688|pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna Synthetase: Enhancement Of Catalysis By Hydrophobic Interactions Length = 319 | Back alignment and structure |
>gi|494690|pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna Synthetase: Enhancement Of Catalysis By Hydrophobic Interactions Length = 319 | Back alignment and structure |
>gi|494693|pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3 Angstroms Resolution. Interaction Of The Enzyme With The Tyrosyl Adenylate Intermediate Length = 319 | Back alignment and structure |
>gi|61680508|pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18 Protein Length = 392 | Back alignment and structure |
>gi|159795079|pdb|2PID|A Chain A, Crystal Structure Of Human Mitochondrial Tyrosyl-Trna Synthetase In Complex With An Adenylate Analog Length = 356 | Back alignment and structure |
gi|31615439|pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 | Back alignment and structure |
>gi|223673858|pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase Length = 314 | Back alignment and structure |
>gi|323463147|pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312 | Back alignment and structure |
>gi|93278582|pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314 | Back alignment and structure |
>gi|310942792|pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314 | Back alignment and structure |
>gi|93278672|pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314 | Back alignment and structure |
>gi|93278581|pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetasein Complex With L-3-(2-Napthyl)alanine Length = 314 | Back alignment and structure |
>gi|67463836|pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312 | Back alignment and structure |
>gi|149241961|pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna Synthetase Length = 306 | Back alignment and structure |
>gi|189096270|pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314 | Back alignment and structure |
>gi|167013270|pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase Length = 314 | Back alignment and structure |
gi|83754906|pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Pyrococcus Horikoshii Length = 375 | Back alignment and structure |
gi|83754904|pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 | Back alignment and structure |
>gi|27065983|pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase Cytokine Length = 372 | Back alignment and structure |
gi|149241068|pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast Tyrosyl- Trna Synthetase Length = 394 | Back alignment and structure |
>gi|186972755|pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477 | Back alignment and structure |
>gi|42543730|pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390 | Back alignment and structure |
>gi|112489952|pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384 | Back alignment and structure |
>gi|50513261|pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378 | Back alignment and structure |
>gi|158428905|pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba Polyphaga Mimivirus Complexed With Tyrosynol Length = 348 | Back alignment and structure |
>gi|93279847|pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340 | Back alignment and structure |
gi|83754903|pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From Aeropyrum Pernix Length = 364 | Back alignment and structure |
gi|290789897|pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 | Back alignment and structure |
>gi|20150424|pdb|1JH3|A Chain A, Solution Structure Of Tyrosyl-Trna Synthetase C-Terminal Domain Length = 107 | Back alignment and structure |
>gi|332138049|pdb|2KTL|A Chain A, Structure Of C-Terminal Domain From Mttyrrs Of A. Nidulans Length = 164 | Back alignment and structure |
>gi|220702585|pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451 | Back alignment and structure |
>gi|326634434|pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Tyrosinol, Triclinic Crystal Form 1 Length = 690 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | ||
1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; trunc | 1e-108 | |
2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Ge | 5e-88 | |
2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacy | 3e-82 | |
1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthet | 4e-76 | |
1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA li | 3e-79 | |
2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, stru | 7e-74 | |
2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, pro | 4e-71 | |
2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, liga | 2e-37 | |
2j5b_A | 348 | Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2 | 3e-14 | |
2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural geno | 1e-12 | |
1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalytic dom | 2e-29 | |
2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylatio | 1e-26 | |
2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structu | 2e-18 | |
2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRN | 2e-23 | |
3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-bind | 2e-20 | |
1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, | 1e-19 | |
1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, | 9e-19 | |
3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, | 1e-16 | |
2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, structural | 7e-12 | |
3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structur | 3e-10 | |
3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphosphate, r | 4e-05 | |
3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, giar | 1e-05 | |
2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural genomi | 4e-05 |
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Length = 420 | Back alignment and structure |
---|
Score = 387 bits (994), Expect = e-108 Identities = 145/418 (34%), Positives = 223/418 (53%), Gaps = 12/418 (2%) Query: 5 KSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQ 64 + + L RG I+Q ++ + ++ L ++ VT Y G D TA SLH GHL + L Q Sbjct: 2 TNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQ 61 Query: 65 KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDAL 124 + GH+PI L+GGGT +IGDPS + E R + +++ +NIE I + ++GT A+ Sbjct: 62 EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHG-AV 120 Query: 125 MLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDF 184 ++NN WL I I LR+ G VN ML +S++SRL+ +S+ EF Y ILQA DF Sbjct: 121 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE--HGISYTEFTYTILQAIDF 178 Query: 185 VELAKNYDCRLQMGGSDQWGNIICGIDL-GERLKTPKLFALTSPLLTTASGTKMGKTLSG 243 L + +C++Q+GGSDQWGNI GI+L + LT PL+T + G K GK+ SG Sbjct: 179 GHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238 Query: 244 AIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMA--KLQGKEINEAKKI 301 A+WL+ E TSPY F+Q+W N D DV+ F K T L EIDR+ K + + EA+K Sbjct: 239 AVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKT 298 Query: 302 IATEITTMVHGREEAEKAATAAMECFDMSIHSQHMPTISISKDEV------SRGMGLLTL 355 +A E+T +HG + A + F + S + +V + ++ + Sbjct: 299 LAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEV 358 Query: 356 IVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDFDSTGNIKLSFGKKNHII 413 +++ G + S +AR + + AI IN + + +D + GKK + + Sbjct: 359 LIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFM 416 |
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Length = 419 | Back alignment and structure |
---|
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Length = 432 | Back alignment and structure |
---|
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Length = 432 | Back alignment and structure |
---|
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Length = 392 | Back alignment and structure |
---|
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Length = 322 | Back alignment and structure |
---|
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} Length = 356 | Back alignment and structure |
---|
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A* Length = 314 | Back alignment and structure |
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>2j5b_A Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2.2A {Mimivirus} Length = 348 | Back alignment and structure |
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>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 | Back alignment and structure |
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>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 | Back alignment and structure |
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>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3} Length = 375 | Back alignment and structure |
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>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 | Back alignment and structure |
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>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 | Back alignment and structure |
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>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 | Back alignment and structure |
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>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 | Back alignment and structure |
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>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 | Back alignment and structure |
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>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 | Back alignment and structure |
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>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} Length = 432 | Back alignment and structure |
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>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica} Length = 386 | Back alignment and structure |
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>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 | Back alignment and structure |
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>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 | Back alignment and structure |
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>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 418 | tyrosyl-tRNA synthetase [Candidatus Liberibacter asiati | ||
2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Ge | 100.0 | |
1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; trunc | 100.0 | |
2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacy | 100.0 | |
1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthet | 100.0 | |
1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA li | 100.0 | |
2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, stru | 100.0 | |
2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, pro | 100.0 | |
2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, liga | 100.0 | |
2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural geno | 100.0 | |
1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalytic dom | 100.0 | |
2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRN | 100.0 | |
3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, | 100.0 | |
2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structu | 100.0 | |
1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, | 100.0 | |
1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, | 100.0 | |
3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-bind | 100.0 | |
2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylatio | 100.0 | |
2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, | 100.0 | |
2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, structural | 100.0 | |
3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structur | 100.0 | |
3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphosphate, r | 100.0 | |
3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, giar | 100.0 | |
3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, c | 99.91 | |
2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural genomi | 100.0 | |
2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
3m5w_A | 322 | Tryptophanyl-tRNA synthetase; alpha-beta structure, csg | 100.0 | |
1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A { | 99.97 | |
2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetas | 99.93 | |
1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synth | 99.92 | |
2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structural gen | 98.59 | |
3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRN | 98.4 | |
2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A AARS | 97.97 | |
3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fo | 97.0 | |
3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA syn | 96.48 | |
1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerization, l | 93.59 | |
2qjt_B | 352 | Nicotinamide-nucleotide adenylyltransferase; two indivi | 90.32 | |
1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-binding str | 98.41 | |
1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, metal I | 97.48 | |
1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, ross | 97.27 | |
1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural genomi | 97.13 | |
1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthe | 96.81 | |
3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, s | 95.15 | |
1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T-RNA s | 90.82 | |
2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthe |