254780953
OmpA/MotB
GeneID in NCBI database: | 8209975 | Locus tag: | CLIBASIA_04260 |
Protein GI in NCBI database: | 254780953 | Protein Accession: | YP_003065366.1 |
Gene range: | +(949458, 950030) | Protein Length: | 190aa |
Gene description: | OmpA/MotB | ||
COG prediction: | [M] Outer membrane protein and related peptidoglycan-associated (lipo)proteins | ||
KEGG prediction: | OmpA/MotB | ||
SEED prediction: | OmpA/MotB domain protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | |||
254780529 | 343 | flagellar motor protein MotB [Candidatus Liberibac | 0.001 | ||
254780547 | 160 | OmpA/MotB [Candidatus Liberibacter asiaticus str. | 0.010 |
>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 | Back alignment |
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Score = 34.7 bits (78), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 95 MLQLIATILNKFPSTVIAIQSHTDSI---GTLKNNLLISQERADVIKSYLIQRGVSSNRF 151 +LQ I +L + VI+I+ HTD+ ++N +S +RA L++ GVS +R Sbjct: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 Query: 152 ISVRGFAY 159 + GFA+ Sbjct: 310 SKISGFAH 317 |
>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 160 | Back alignment |
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Score = 31.6 bits (70), Expect = 0.010, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 24/38 (63%) Query: 113 IQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNR 150 I+ H D +G+ +++ + RA + +Y + RG+S++R Sbjct: 85 IEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASR 122 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | |||
315122505 | 190 | OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC | 1 | 3e-52 | |
85711329 | 188 | Outer membrane protein and related peptidoglycan-associ | 1 | 2e-24 | |
109900555 | 215 | OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 21 | 1 | 2e-24 | |
332308557 | 215 | OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7 | 1 | 3e-24 | |
317060136 | 193 | outer membrane protein [Fusobacterium sp. D12] Length = | 1 | 2e-23 | |
317059511 | 204 | outer membrane protein [Fusobacterium sp. 3_1_5R] Lengt | 1 | 3e-23 | |
257462480 | 217 | Outer membrane protein [Fusobacterium sp. D12] Length = | 1 | 3e-23 | |
257452971 | 217 | Outer membrane protein [Fusobacterium sp. 3_1_5R] Lengt | 1 | 3e-23 | |
153009315 | 221 | OmpA/MotB domain-containing protein [Ochrobactrum anthr | 1 | 4e-23 | |
56476024 | 232 | outer membrane lipoprotein [Aromatoleum aromaticum EbN1 | 1 | 4e-23 |
>gi|315122505|ref|YP_004062994.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 190 | Back alignment and organism information |
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Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 104/187 (55%), Positives = 133/187 (71%), Gaps = 5/187 (2%) Query: 1 MIKELGLSMFIMTTISGCGLASREKKKVF---LHKSNDTDIVNKRFGSSLDKAEDEFQMQ 57 MIK G M +MT +SGC +++ K+F L+ N+ ++ FGS LDKAEDE +MQ Sbjct: 1 MIKRTGALMVVMTALSGC--SNKGNHKLFSKKLNNENNIILIKPNFGSHLDKAEDELRMQ 58 Query: 58 LQDTGIVVSRIGDMITCYIPVHVSFVSEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHT 117 LQD + + R D ITC+IPVH++F S L K +P+L IAT LNKFPST IAI HT Sbjct: 59 LQDVDVSIIRKYDQITCHIPVHIAFSSGSILHKDIVPVLNSIATTLNKFPSTKIAITGHT 118 Query: 118 DSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQR 177 DSIGTL+ NLLISQ+R+ +I YLI++GVS +RF +GFAYK PIDTNDT+ GR+NNQR Sbjct: 119 DSIGTLEYNLLISQQRSQIITDYLIEKGVSPDRFAPPQGFAYKRPIDTNDTQEGRKNNQR 178 Query: 178 IEIQIFP 184 +EI IFP Sbjct: 179 VEINIFP 185 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|85711329|ref|ZP_01042388.1| Outer membrane protein and related peptidoglycan-associated(lipo)proteins [Idiomarina baltica OS145] Length = 188 | Back alignment and organism information |
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>gi|109900555|ref|YP_663810.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 215 | Back alignment and organism information |
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>gi|332308557|ref|YP_004436408.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 215 | Back alignment and organism information |
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>gi|317060136|ref|ZP_07924621.1| outer membrane protein [Fusobacterium sp. D12] Length = 193 | Back alignment and organism information |
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>gi|317059511|ref|ZP_07923996.1| outer membrane protein [Fusobacterium sp. 3_1_5R] Length = 204 | Back alignment and organism information |
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>gi|257462480|ref|ZP_05626892.1| Outer membrane protein [Fusobacterium sp. D12] Length = 217 | Back alignment and organism information |
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>gi|257452971|ref|ZP_05618270.1| Outer membrane protein [Fusobacterium sp. 3_1_5R] Length = 217 | Back alignment and organism information |
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>gi|153009315|ref|YP_001370530.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC 49188] Length = 221 | Back alignment and organism information |
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>gi|56476024|ref|YP_157613.1| outer membrane lipoprotein [Aromatoleum aromaticum EbN1] Length = 232 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
cd07185 | 106 | cd07185, OmpA_C-like, Peptidoglycan binding domains sim | 3e-24 | |
pfam00691 | 97 | pfam00691, OmpA, OmpA family | 2e-13 | |
PRK08457 | 257 | PRK08457, motB, flagellar motor protein MotB; Reviewed | 2e-09 | |
TIGR02802 | 104 | TIGR02802, Pal_lipo, peptidoglycan-associated lipoprote | 7e-09 | |
PRK07033 | 427 | PRK07033, PRK07033, hypothetical protein; Provisional | 7e-09 | |
TIGR03350 | 137 | TIGR03350, type_VI_ompA, type VI secretion system OmpA/ | 1e-08 | |
PRK09039 | 343 | PRK09039, PRK09039, hypothetical protein; Validated | 5e-08 | |
TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system OmpA fa | 7e-08 | |
PRK08126 | 432 | PRK08126, PRK08126, hypothetical protein; Provisional | 4e-07 | |
PRK10808 | 351 | PRK10808, PRK10808, outer membrane protein A; Reviewed | 2e-06 | |
PRK09967 | 160 | PRK09967, PRK09967, putative outer membrane lipoprotein | 8e-06 | |
PRK06667 | 252 | PRK06667, motB, flagellar motor protein MotB; Validated | 9e-06 | |
PRK06925 | 230 | PRK06925, PRK06925, flagellar motor protein MotS; Revie | 1e-05 | |
PRK09038 | 281 | PRK09038, PRK09038, flagellar motor protein MotD; Revie | 2e-05 | |
PRK07734 | 259 | PRK07734, motB, flagellar motor protein MotB; Reviewed | 6e-05 | |
PRK10802 | 173 | PRK10802, PRK10802, peptidoglycan-associated outer memb | 6e-05 | |
PRK07034 | 536 | PRK07034, PRK07034, hypothetical protein; Provisional | 0.002 | |
PRK10510 | 219 | PRK10510, PRK10510, putative outer membrane lipoprotein | 1e-18 | |
PRK08944 | 302 | PRK08944, motB, flagellar motor protein MotB; Reviewed | 2e-13 | |
COG1360 | 244 | COG1360, MotB, Flagellar motor protein [Cell motility a | 9e-13 | |
COG2885 | 190 | COG2885, OmpA, Outer membrane protein and related pepti | 3e-25 | |
PRK09040 | 214 | PRK09040, PRK09040, hypothetical protein; Provisional | 0.004 |
>gnl|CDD|143586 cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA | Back alignment and domain information |
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>gnl|CDD|144333 pfam00691, OmpA, OmpA family | Back alignment and domain information |
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>gnl|CDD|181435 PRK08457, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>gnl|CDD|131849 TIGR02802, Pal_lipo, peptidoglycan-associated lipoprotein | Back alignment and domain information |
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>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional | Back alignment and domain information |
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>gnl|CDD|132393 TIGR03350, type_VI_ompA, type VI secretion system OmpA/MotB family protein | Back alignment and domain information |
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>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated | Back alignment and domain information |
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>gnl|CDD|163501 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
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>gnl|CDD|181240 PRK08126, PRK08126, hypothetical protein; Provisional | Back alignment and domain information |
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>gnl|CDD|182748 PRK10808, PRK10808, outer membrane protein A; Reviewed | Back alignment and domain information |
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>gnl|CDD|182172 PRK09967, PRK09967, putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>gnl|CDD|180652 PRK06667, motB, flagellar motor protein MotB; Validated | Back alignment and domain information |
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>gnl|CDD|180754 PRK06925, PRK06925, flagellar motor protein MotS; Reviewed | Back alignment and domain information |
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>gnl|CDD|181618 PRK09038, PRK09038, flagellar motor protein MotD; Reviewed | Back alignment and domain information |
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>gnl|CDD|181095 PRK07734, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>gnl|CDD|182744 PRK10802, PRK10802, peptidoglycan-associated outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional | Back alignment and domain information |
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>gnl|CDD|182507 PRK10510, PRK10510, putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>gnl|CDD|181590 PRK08944, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>gnl|CDD|31551 COG1360, MotB, Flagellar motor protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|32711 COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|181620 PRK09040, PRK09040, hypothetical protein; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
PRK10510 | 219 | putative outer membrane lipoprotein; Provisional | 100.0 | |
PRK09967 | 160 | putative outer membrane lipoprotein; Provisional | 100.0 | |
COG2885 | 190 | OmpA Outer membrane protein and related peptidoglycan-a | 100.0 | |
PRK09038 | 285 | flagellar motor protein MotD; Reviewed | 100.0 | |
PRK10802 | 173 | peptidoglycan-associated outer membrane lipoprotein; Pr | 100.0 | |
PRK07734 | 259 | motB flagellar motor protein MotB; Reviewed | 100.0 | |
PRK06925 | 230 | flagellar motor protein MotS; Reviewed | 100.0 | |
PRK06667 | 254 | motB flagellar motor protein MotB; Validated | 100.0 | |
PRK06742 | 225 | flagellar motor protein MotS; Reviewed | 100.0 | |
TIGR03350 | 137 | type_VI_ompA type VI secretion system OmpA/MotB family | 100.0 | |
PRK08944 | 305 | motB flagellar motor protein MotB; Reviewed | 100.0 | |
PRK08126 | 428 | hypothetical protein; Provisional | 100.0 | |
PRK07033 | 429 | hypothetical protein; Provisional | 100.0 | |
PRK08457 | 251 | motB flagellar motor protein MotB; Reviewed | 100.0 | |
PRK09040 | 215 | hypothetical protein; Provisional | 100.0 | |
COG1360 | 244 | MotB Flagellar motor protein [Cell motility and secreti | 99.98 | |
PRK10808 | 347 | outer membrane protein A; Reviewed | 99.97 | |
PRK09039 | 343 | hypothetical protein; Validated | 99.97 | |
PRK09041 | 317 | motB flagellar motor protein MotB; Validated | 99.97 | |
cd07185 | 106 | OmpA_C-like Peptidoglycan binding domains similar to th | 99.96 | |
PRK06778 | 289 | hypothetical protein; Validated | 99.96 | |
PRK05996 | 431 | motB flagellar motor protein MotB; Validated | 99.92 | |
PRK12799 | 424 | motB flagellar motor protein MotB; Reviewed | 99.91 | |
PRK07034 | 565 | hypothetical protein; Provisional | 99.84 | |
TIGR02802 | 104 | Pal_lipo peptidoglycan-associated lipoprotein; InterPro | 100.0 | |
pfam00691 | 97 | OmpA OmpA family. The Pfam entry also includes MotB and | 99.91 | |
PRK11627 | 192 | hypothetical protein; Provisional | 94.76 | |
PRK12696 | 238 | flgH flagellar basal body L-ring protein; Reviewed | 94.12 |
>PRK10510 putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>PRK09967 putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>PRK09038 flagellar motor protein MotD; Reviewed | Back alignment and domain information |
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>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional | Back alignment and domain information |
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>PRK07734 motB flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>PRK06925 flagellar motor protein MotS; Reviewed | Back alignment and domain information |
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>PRK06667 motB flagellar motor protein MotB; Validated | Back alignment and domain information |
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>PRK06742 flagellar motor protein MotS; Reviewed | Back alignment and domain information |
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>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein | Back alignment and domain information |
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>PRK08944 motB flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>PRK08126 hypothetical protein; Provisional | Back alignment and domain information |
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>PRK07033 hypothetical protein; Provisional | Back alignment and domain information |
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>PRK08457 motB flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>PRK09040 hypothetical protein; Provisional | Back alignment and domain information |
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>COG1360 MotB Flagellar motor protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK10808 outer membrane protein A; Reviewed | Back alignment and domain information |
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>PRK09039 hypothetical protein; Validated | Back alignment and domain information |
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>PRK09041 motB flagellar motor protein MotB; Validated | Back alignment and domain information |
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>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA | Back alignment and domain information |
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>PRK06778 hypothetical protein; Validated | Back alignment and domain information |
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>PRK05996 motB flagellar motor protein MotB; Validated | Back alignment and domain information |
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>PRK12799 motB flagellar motor protein MotB; Reviewed | Back alignment and domain information |
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>PRK07034 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein; InterPro: IPR014169 Members in this entry represent the peptidoglycan-associated lipoprotein (Pal or OprL) protein of the Tol-Pal system | Back alignment and domain information |
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>pfam00691 OmpA OmpA family | Back alignment and domain information |
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>PRK11627 hypothetical protein; Provisional | Back alignment and domain information |
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>PRK12696 flgH flagellar basal body L-ring protein; Reviewed | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
2k1s_A | 149 | Solution Nmr Structure Of The Folded C-Terminal Fra | 4e-26 | |
3ldt_A | 169 | Crystal Structure Of An Outer Membrane Protein(Ompa | 1e-13 | |
2aiz_P | 134 | Solution Structure Of Peptidoglycan Associated Lipo | 1e-10 | |
3oon_A | 123 | The Structure Of An Outer Membrance Protein From Bo | 9e-10 | |
3khn_A | 174 | Crystal Structure Of Putative Motb Like Protein Dvu | 2e-09 | |
2zvy_A | 183 | Structure Of The Periplasmic Domain Of Motb From Sa | 1e-05 | |
2zov_A | 210 | Structure Of The Periplasmic Domain Of Motb From Sa | 4e-05 | |
2kgw_A | 129 | Solution Structure Of The Carboxy-Terminal Domain O | 6e-17 | |
1oap_A | 109 | Mad Structure Of The Periplasmique Domain Of The Es | 1e-12 | |
2hqs_H | 118 | Crystal Structure Of TolbPAL COMPLEX Length = 118 | 1e-12 | |
3nb3_A | 346 | The Host Outer Membrane Proteins Ompa And Ompc Are | 2e-10 | |
2zf8_A | 278 | Crystal Structure Of Moty Length = 278 | 3e-10 | |
3cyp_B | 138 | The Crystal Structure Of The C-Terminal Domain Of H | 2e-07 | |
1r1m_A | 164 | Structure Of The Ompa-Like Domain Of Rmpm From Neis | 4e-04 |
>gi|188036026|pdb|2K1S|A Chain A, Solution Nmr Structure Of The Folded C-Terminal Fragment Of Yiad From Escherichia Coli. Northeast Structural Genomics Consortium Target Er553 Length = 149 | Back alignment and structure |
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 2/141 (1%) Query: 45 SSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVSEV-FLEKKFLPMLQLIATIL 103 +D E + + +++ TG+ V+R GD I +P +V+F S L+ L +A +L Sbjct: 1 YYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVL 60 Query: 104 NKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPI 163 ++P T + + +TDS G N+ +SQ+RAD + S LI +GV ++R I +G PI Sbjct: 61 KEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPI 119 Query: 164 DTNDTKVGRQNNQRIEIQIFP 184 +N T G+ N+R+EI + P Sbjct: 120 ASNSTAEGKAQNRRVEITLSP 140 |
>gi|285803774|pdb|3LDT|A Chain A, Crystal Structure Of An Outer Membrane Protein(Ompa)from Legionella Pneumophila Length = 169 | Back alignment and structure |
>gi|159163741|pdb|2AIZ|P Chain P, Solution Structure Of Peptidoglycan Associated Lipoprotein From Haemophilus Influenza Bound To Udp-N-Acetylmuramoyl-L- Alanyl-D-Glutamyl-Meso-2,6-Diaminopimeloyl-D-Alanyl-D- Alanine Length = 134 | Back alignment and structure |
>gi|307568444|pdb|3OON|A Chain A, The Structure Of An Outer Membrance Protein From Borrelia Burgdorferi B31 Length = 123 | Back alignment and structure |
>gi|270047795|pdb|3KHN|A Chain A, Crystal Structure Of Putative Motb Like Protein Dvu_2228 From Desulfovibrio Vulgaris. Length = 174 | Back alignment and structure |
>gi|257097127|pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Ii) Length = 183 | Back alignment and structure |
>gi|239781764|pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form I) Length = 210 | Back alignment and structure |
>gi|290559940|pdb|2KGW|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Ompatb, A Pore Forming Protein From Mycobacterium Tuberculosis Length = 129 | Back alignment and structure |
>gi|46015011|pdb|1OAP|A Chain A, Mad Structure Of The Periplasmique Domain Of The Escherichia Coli Pal Protein Length = 109 | Back alignment and structure |
>gi|145579534|pdb|2HQS|H Chain H, Crystal Structure Of TolbPAL COMPLEX Length = 118 | Back alignment and structure |
>gi|323462898|pdb|3NB3|A Chain A, The Host Outer Membrane Proteins Ompa And Ompc Are Packed At Specific Sites In The Shigella Phage Sf6 Virion As Structural Components Length = 346 | Back alignment and structure |
>gi|193885262|pdb|2ZF8|A Chain A, Crystal Structure Of Moty Length = 278 | Back alignment and structure |
>gi|193885364|pdb|3CYP|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256). Length = 138 | Back alignment and structure |
>gi|49258621|pdb|1R1M|A Chain A, Structure Of The Ompa-Like Domain Of Rmpm From Neisseria Meningitidis Length = 164 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
3ldt_A | 169 | Outer membrane protein, OMPA family protein; OMPA-like | 9e-27 | |
3oon_A | 123 | Outer membrane protein (TPN50); protein structure initi | 2e-20 | |
2k1s_A | 149 | Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha | 1e-17 | |
2zov_A | 210 | Chemotaxis protein MOTB; 2-layer sandwich, bacterial fl | 7e-15 | |
2zvy_A | 183 | Chemotaxis protein MOTB; 2-layer sandwich, bacterial fl | 2e-09 | |
3khn_A | 174 | MOTB protein, putative; structural genomics, OMPA-like | 4e-08 | |
2kgw_A | 129 | Outer membrane protein A; OMPA- like, cell membrane, tr | 7e-22 | |
2zf8_A | 278 | MOTY, component of sodium-driven polar flagellar motor; | 3e-21 | |
3cyp_B | 138 | Chemotaxis protein MOTB; bacterial flagellar motor, pep | 3e-18 | |
1r1m_A | 164 | Outer membrane protein class 4; 1.90A {Neisseria mening | 6e-17 | |
2hqs_H | 118 | Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, t | 1e-07 | |
2aiz_P | 134 | Outer membrane protein P6; alpha-beta sandwich; HET: UD | 2e-06 |
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} Length = 169 | Back alignment and structure |
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Score = 115 bits (288), Expect = 9e-27 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 44 GSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVSEVF-LEKKFLPMLQLIATI 102 D + LQ I GD T IP F+ L + P L + + Sbjct: 21 SIYRDSKRKIIR-DLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRL 79 Query: 103 LNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYP 162 LN +P + I + TD++G+ + +SQ +A+ + ++L G+++ R + G+ K Sbjct: 80 LNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKR-LKAEGYGDKNA 138 Query: 163 IDTNDTKVGRQNNQRIEIQIFP 184 I N G N+RIEIQ F Sbjct: 139 ISDNAIIHGSAQNRRIEIQWFT 160 |
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi} Length = 123 | Back alignment and structure |
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>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} Length = 149 | Back alignment and structure |
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>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} Length = 210 | Back alignment and structure |
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>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A Length = 183 | Back alignment and structure |
---|
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} Length = 174 | Back alignment and structure |
---|
>2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis} Length = 129 | Back alignment and structure |
---|
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} Length = 278 | Back alignment and structure |
---|
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* Length = 138 | Back alignment and structure |
---|
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Length = 164 | Back alignment and structure |
---|
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A Length = 118 | Back alignment and structure |
---|
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1 Length = 134 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
3ldt_A | 169 | Outer membrane protein, OMPA family protein; OMPA-like | 100.0 | |
2k1s_A | 149 | Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha | 100.0 | |
3khn_A | 174 | MOTB protein, putative; structural genomics, OMPA-like | 100.0 | |
2zov_A | 210 | Chemotaxis protein MOTB; 2-layer sandwich, bacterial fl | 99.97 | |
2zvy_A | 183 | Chemotaxis protein MOTB; 2-layer sandwich, bacterial fl | 99.97 | |
3oon_A | 123 | Outer membrane protein (TPN50); protein structure initi | 99.96 | |
1r1m_A | 164 | Outer membrane protein class 4; 1.90A {Neisseria mening | 99.97 | |
2kgw_A | 129 | Outer membrane protein A; OMPA- like, cell membrane, tr | 99.97 | |
2hqs_H | 118 | Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, t | 99.96 | |
2aiz_P | 134 | Outer membrane protein P6; alpha-beta sandwich; HET: UD | 99.96 | |
3cyp_B | 138 | Chemotaxis protein MOTB; bacterial flagellar motor, pep | 99.96 | |
2zf8_A | 278 | MOTY, component of sodium-driven polar flagellar motor; | 99.96 |
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} | Back alignment and structure |
---|
Probab=100.00 E-value=1.3e-36 Score=223.02 Aligned_cols=144 Identities=28% Similarity=0.421 Sum_probs=128.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 012337888999999720178358860875899852211128-8131099999999999999985899489999803778 Q gi|254780953|r 42 RFGSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI 120 (190) Q Consensus 42 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~ 120 (190) ....+++.. .++...+...++.+...++.+.+.++..++|+ +++.|+++++..|++|+.+|+++|+..|.|+||||+. T Consensus 19 ~~~~~~d~~-~~~~~~l~~~~v~v~~~~~~~~v~l~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~GhTD~~ 97 (169) T 3ldt_A 19 VASIYRDSK-RKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNV 97 (169) T ss_dssp TTHHHHHHH-HHHHHHHHHTTCEEEEETTEEEEEEETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTS T ss_pred HHHHHHHHH-HHHHHHHHCCCCEEEEECCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 764329999-9999998539937999699899990688347299642698899999999999997899579999973898 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEC-CHH Q ss_conf 7200111225899999999888523874516999970345888997697798529916999930-101 Q gi|254780953|r 121 GTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFP-RGN 187 (190) Q Consensus 121 g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~-~~~ 187 (190) |++.|||.||++||.+|++||+.+|+++.| |.+.|||+++|+++|+++++|++||||||.|++ +|+ T Consensus 98 g~~~~N~~LS~~RA~~V~~~L~~~Gv~~~r-i~~~G~G~~~Pv~~n~t~egra~NRRVei~i~~~~g~ 164 (169) T 3ldt_A 98 GSRSHKRKLSQAQAETMMTFLWANGIAAKR-LKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSEGH 164 (169) T ss_dssp CCC--CHHHHHHHHHHHHHHHHHTTCCTTT-EEECCTTCTTSCCCTTTSCGGGGTSEEEEEEECCCC- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCCC T ss_conf 976675779999999999999985999799-8999975668679993988998549889999958987 |
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} | Back alignment and structure |
---|
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} | Back alignment and structure |
---|
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} | Back alignment and structure |
---|
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A | Back alignment and structure |
---|
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi} | Back alignment and structure |
---|
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 | Back alignment and structure |
---|
>2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
---|
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A | Back alignment and structure |
---|
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1 | Back alignment and structure |
---|
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B | Back alignment and structure |
---|
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | |||
d1r1ma_ | 140 | d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-t | 8e-11 | |
d2hqsc1 | 106 | d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotei | 8e-10 | |
d2aizp1 | 134 | d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein | 5e-09 |
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Length = 140 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Bacillus chorismate mutase-like superfamily: OmpA-like family: OmpA-like domain: Outer membrane protein class 4, RmpM, C-terminal domain species: Neisseria meningitidis [TaxId: 487] Score = 60.6 bits (146), Expect = 8e-11 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 28/137 (20%) Query: 75 YIPVHVSFVSEVF-------LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNL 127 Y+ +S ++ L + L+++A L++ + ++ HTD +G+ K N Sbjct: 3 YVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQ 62 Query: 128 LISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGR--------------- 172 +S+ RA V+ + L+ GV +R IS G T + Sbjct: 63 ALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 121 Query: 173 -----QNNQRIEIQIFP 184 + ++R++++I Sbjct: 122 LIACIEPDRRVDVKIRS 138 |
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
---|
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]} Length = 134 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
d2aizp1 | 134 | Peptidoglycan-associated lipoprotein, PAL, periplasmic | 99.96 | |
d1r1ma_ | 140 | Outer membrane protein class 4, RmpM, C-terminal domain | 99.96 | |
d2hqsc1 | 106 | Peptidoglycan-associated lipoprotein, PAL, periplasmic | 99.96 |
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Bacillus chorismate mutase-like superfamily: OmpA-like family: OmpA-like domain: Peptidoglycan-associated lipoprotein, PAL, periplasmic domain species: Haemophilus influenzae [TaxId: 727] Probab=99.96 E-value=2e-29 Score=181.54 Aligned_cols=103 Identities=23% Similarity=0.404 Sum_probs=97.5 Q ss_pred CEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 11128-81310999999999999999858994899998037787200111225899999999888523874516999970 Q gi|254780953|r 79 HVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGF 157 (190) Q Consensus 79 ~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~ 157 (190) .+||+ +++.|+++++..|++++.+|+.+|+.+|.|.||||..|+..|||.||++||.+|++||+..|+++.| |.+.|| T Consensus 31 ~I~F~~~s~~L~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r-i~~~g~ 109 (134) T d2aizp1 31 TVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGK-LGTVSY 109 (134) T ss_dssp EEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEEC T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEC T ss_conf 1883799812498899999999999986999689996043433221110137899999999899771875345-513775 Q ss_pred CCCCCCCCCCCHHHHHCCCCEEEEE Q ss_conf 3458889976977985299169999 Q gi|254780953|r 158 AYKYPIDTNDTKVGRQNNQRIEIQI 182 (190) Q Consensus 158 G~~~p~~~n~~~~~ra~NRRVei~i 182 (190) |+++|+.++.++++|++||||||+. T Consensus 110 G~~~P~~~~~~~~~~~~NRRVeiv~ 134 (134) T d2aizp1 110 GEEKPAVLGHDEAAYSKNRRAVLAY 134 (134) T ss_dssp TTTSCSSCSCSHHHHHHHSEEEEEC T ss_pred CCCCCCCCCCCHHHHHCCCCEEEEC T ss_conf 4337578891977986239899959 |
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
---|
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. | ||
2k1s_A_ | 149 | (A:) Inner membrane lipoprotein YIAD; abbababab, O | 6e-20 | |
3ldt_A_ | 169 | (A:) Outer membrane protein, OMPA family protein; | 1e-17 | |
3khn_A_ | 174 | (A:) MOTB protein, putative; structural genomics, | 5e-17 | |
2aiz_P_ | 134 | (P:) Outer membrane protein P6; alpha-beta sandwic | 1e-15 | |
2zvy_A_ | 183 | (A:) Chemotaxis protein MOTB; 2-layer sandwich, ba | 4e-15 | |
2zov_A_ | 210 | (A:) Chemotaxis protein MOTB; 2-layer sandwich, ba | 5e-15 | |
1r1m_A_ | 164 | (A:) Outer membrane protein class 4; 1.90A {Neisse | 6e-15 | |
2hqs_H_ | 118 | (H:) Peptidoglycan-associated lipoprotein; TOLB, P | 4e-15 | |
3cyp_B_ | 138 | (B:) Chemotaxis protein MOTB; bacterial flagellar | 1e-14 | |
2zf8_A_155-278 | 124 | (A:155-278) MOTY, component of sodium-driven polar | 3e-13 |
>2k1s_A (A:) Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12}Length = 149 | Back alignment and structure |
---|
Score = 91.7 bits (227), Expect = 6e-20 Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%) Query: 47 LDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNK 105 +D E + + +++ TG+ V+R GD I +P +V+F S L+ L +A +L + Sbjct: 3 MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKE 62 Query: 106 FPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDT 165 +P T + + +TDS G N+ +SQ+RAD + S LI +GV ++R I +G PI + Sbjct: 63 YPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIAS 121 Query: 166 NDTKVGRQNNQRIEIQIFPR 185 N T G+ N+R+EI + P Sbjct: 122 NSTAEGKAQNRRVEITLSPL 141 |
>3ldt_A (A:) Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}Length = 169 | Back alignment and structure |
---|
>3khn_A (A:) MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}Length = 174 | Back alignment and structure |
---|
>2aiz_P (P:) Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae}Length = 134 | Back alignment and structure |
---|
>2zvy_A (A:) Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_ALength = 183 | Back alignment and structure |
---|
>2zov_A (A:) Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium}Length = 210 | Back alignment and structure |
---|
>1r1m_A (A:) Outer membrane protein class 4; 1.90A {Neisseria meningitidis}Length = 164 | Back alignment and structure |
---|
>2hqs_H (H:) Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli}Length = 118 | Back alignment and structure |
---|
>3cyp_B (B:) Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B*Length = 138 | Back alignment and structure |
---|
>2zf8_A (A:155-278) MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}Length = 124 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 190 | OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62 | ||
2k1s_A_ | 149 | Inner membrane lipoprotein YIAD; abbababab, OMPA, | 100.0 | |
3ldt_A_ | 169 | Outer membrane protein, OMPA family protein; OMPA- | 100.0 | |
3khn_A_ | 174 | MOTB protein, putative; structural genomics, OMPA- | 100.0 | |
1r1m_A_ | 164 | Outer membrane protein class 4; 1.90A {Neisseria m | 99.96 | |
2aiz_P_ | 134 | Outer membrane protein P6; alpha-beta sandwich; HE | 99.96 | |
2zov_A_ | 210 | Chemotaxis protein MOTB; 2-layer sandwich, bacteri | 99.96 | |
2zvy_A_ | 183 | Chemotaxis protein MOTB; 2-layer sandwich, bacteri | 99.96 | |
2hqs_H_ | 118 | Peptidoglycan-associated lipoprotein; TOLB, PAL, T | 99.97 | |
2zf8_A_155-278 | 124 | MOTY, component of sodium-driven polar flagellar m | 99.96 | |
3cyp_B_ | 138 | Chemotaxis protein MOTB; bacterial flagellar motor | 99.96 |
>2k1s_A (A:) Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} | Back alignment and structure |
---|
Probab=100.00 E-value=5.5e-34 Score=209.19 Aligned_cols=142 Identities=33% Similarity=0.494 Sum_probs=134.5 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH Q ss_conf 37888999999720178358860875899852211128-81310999999999999999858994899998037787200 Q gi|254780953|r 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLK 124 (190) Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~ 124 (190) +++.+...+...+..+++.+...++...+.++..++|+ +++.|++++++.|+.++.+|+.+|+..|.|+||||..|++. T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g~~~ 81 (149) T 2k1s_A 2 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHD 81 (149) T ss_dssp CSHHHHHHHHHHTTTTSCEEEEETTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHH T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC T ss_conf 78899999999871599779997999999847860665997336989999999887777318875201022413544543 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH Q ss_conf 1112258999999998885238745169999703458889976977985299169999301011 Q gi|254780953|r 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190) Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190) +||.||.+||.+|++||...|+++.| |.+.|||+.+|+++|+++++|++||||||+|.++... T Consensus 82 ~N~~LS~~RA~aV~~~l~~~gv~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~ 144 (149) T 2k1s_A 82 LNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIASNSTAEGKAQNRRVEITLSPLLEH 144 (149) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEECTTTCCSSCSSSHHHHHHHSEEEEEEEECSSC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCHH T ss_conf 32017889999999999981997663-3589965657668993977897449699999615140 |
>3ldt_A (A:) Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} | Back alignment and structure |
---|
>3khn_A (A:) MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} | Back alignment and structure |
---|
>1r1m_A (A:) Outer membrane protein class 4; 1.90A {Neisseria meningitidis} | Back alignment and structure |
---|
>2aiz_P (P:) Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} | Back alignment and structure |
---|
>2zov_A (A:) Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} | Back alignment and structure |
---|
>2zvy_A (A:) Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A | Back alignment and structure |
---|
>2hqs_H (H:) Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} | Back alignment and structure |
---|
>2zf8_A (A:155-278) MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} | Back alignment and structure |
---|
>3cyp_B (B:) Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* | Back alignment and structure |
---|