Conserved Domains in CDD Database
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value Target 125
ribonucleotide-diphosphate reductase subunit beta [Cand
PRK07209 369
PRK07209, PRK07209, ribonucleotide-diphosphate reductas
3e-66 cd01049 288
cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subun
8e-25 PRK09614 324
PRK09614, nrdF, ribonucleotide-diphosphate reductase su
2e-19 PLN02492 324
PLN02492, PLN02492, ribonucleoside-diphosphate reductas
6e-15 PTZ00211 330
PTZ00211, PTZ00211, ribonucleoside-diphosphate reductas
8e-15 KOG1567 344
KOG1567, KOG1567, KOG1567, Ribonucleotide reductase, be
3e-14 PRK12759 410
PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleo
5e-14 PRK09101 376
PRK09101, nrdB, ribonucleotide-diphosphate reductase su
2e-08 pfam00268 281
pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, sm
8e-08 COG0208 348
COG0208, NrdF, Ribonucleotide reductase, beta subunit [
1e-31
>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated
Back Show alignment and domain information
Score = 244 bits (626), Expect = 3e-66
Identities = 84/125 (67%), Positives = 100/125 (80%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDES+HLNFGID+INQIK+ENPHLWT EFQ + R ++ EA LE YA +TMP+G +GL
Sbjct: 245 LRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGL 304
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NA + Y++FIANRR QIGL+P + TENPFPWMSE+IDLKKEKNFFETRV EYQ G
Sbjct: 305 NASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGG 364
Query: 121 ELKWD 125
L WD
Sbjct: 365 ALSWD 369
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain
Back Show alignment and domain information
Score = 107 bits (270), Expect = 8e-25
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDESLH +F +I ++ ENP L+T+EF+++ ++ EA LE +A + +P G +GL
Sbjct: 187 SRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLLPDGILGL 246
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 101
N +QY++++ANRR +GLE LF +NPF WM + D
Sbjct: 247 NKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELISD 288
Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-helical bundle; some have 2 addition beta strands. Yeast is unique in that it assembles both homodimers and heterodimers of RNRR2. The yeast heterodimer, Y2Y4, contains R2 (Y2) and a R2 homolog (Y4) that lacks the diiron center and is proposed to only assist in cofactor assembly, and perhaps stabilize R1 (Y1) in its active conformation. Length = 288
>gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed
Back Show alignment and domain information
Score = 89.9 bits (224), Expect = 2e-19
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
RDESLH + + + E P L +E + + +L+E E AY VGL
Sbjct: 196 RDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEEAYTELLYDI--VGL- 252
Query: 62 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQG 119
A ++Y+++ AN+R +GLEPLF + E W++ + + E +FFE + T Y +G
Sbjct: 253 AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKG 312
Query: 120 A-ELKWD 125
A E D
Sbjct: 313 ATEATED 319
>gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase
Back Show alignment and domain information
Score = 74.7 bits (184), Expect = 6e-15
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
RDE LH +F + + L K +++ + ++ EA +E + + +P VG+N
Sbjct: 194 RDEGLHCDFACLLYS-------LLKNKLSEERVKEIVCEAVEIEKEFVCDALPCALVGMN 246
Query: 62 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 118
A QY++F+A+R +G E ++ NPF WM E+I L+ + NFFE RV EYQ+
Sbjct: 247 ADLMSQYIEFVADRLLVALGYEKVYN-VVNPFDWM-ELISLQGKTNFFEKRVGEYQK 301
>gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional
Back Show alignment and domain information
Score = 74.4 bits (183), Expect = 8e-15
Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
RDE LH +F + + +K + P +++ + ++ EA +E + + +P +G+N
Sbjct: 205 RDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKEAVEIEREFICDALPVDLIGMN 257
Query: 62 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 118
+ QY++F+A+R +G+ ++ ++NPF WM ++I L+ + NFFE RV EYQ+
Sbjct: 258 SRLMAQYIEFVADRLLVALGVPKIYN-SKNPFDWM-DMISLQGKTNFFEKRVGEYQK 312
>gnl|CDD|36780 KOG1567, KOG1567, KOG1567, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 72.7 bits (178), Expect = 3e-14
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
RDE LH +F + HL K +++ ++ EA +E + E +P +G+N
Sbjct: 219 RDEGLHCDFAC-------LLFSHLKKKPNEERIEEIITEAVEIEQEFLTEALPVNLIGMN 271
Query: 62 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 118
QY++F+A+R ++G E + ENPF +M E I L + NFFE RV+EYQ+
Sbjct: 272 CDLMSQYIEFVADRLLVELGNEKYYN-AENPFDFM-ENISLAGKTNFFEKRVSEYQK 326
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Back Show alignment and domain information
Score = 71.6 bits (175), Expect = 5e-14
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-G 59
+RDES+H+ + ENP++ EF+++ M +A LE + G + G
Sbjct: 279 IRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYELGTIEG 338
Query: 60 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ-Q 118
L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ NFFE RVTEY+
Sbjct: 339 LKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVA 398
Query: 119 GAELKWD 125
G WD
Sbjct: 399 GLTGSWD 405
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed
Back Show alignment and domain information
Score = 53.4 bits (129), Expect = 2e-08
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 2 RDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG- 56
RDE+LHL ++N + ++P + +E +Q+ + +A E +A G
Sbjct: 237 RDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGS 296
Query: 57 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
+GLN QY+++I N R +GL+ F+ NP PW+
Sbjct: 297 MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWI 336
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain
Back Show alignment and domain information
Score = 51.2 bits (123), Expect = 8e-08
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
RDE+LH + + N K ++ + EA +EI + P G+N
Sbjct: 192 RDEALHTDAACLLYNNYLGLE-----KPEPKRIYKLFREAVEIEIEFIEAAAPVDVHGMN 246
Query: 62 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 97
+ +QY++F A+R IG +PLF NPF ++
Sbjct: 247 VRAIKQYIEFSADRLLVAIGYKPLFN-VPNPFFPLA 281
>gnl|CDD|30557 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 130 bits (328), Expect = 1e-31
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE+LHL F +I ++ ENP LWT E + + + EA LE YA P GL
Sbjct: 218 IRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLFKEAVELEKEYAEYLYPGIL-GL 276
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
+QY+++ AN+R +GLEPL+ ENP PW+ + ++ +FFE RV+ YQ+G+
Sbjct: 277 TEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQKGS 336
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability Target
125
ribonucleotide-diphosphate reductase subunit beta [Cand
PRK07209 391
ribonucleotide-diphosphate reductase subunit beta; Vali
100.0 PRK12759 410
bifunctional gluaredoxin/ribonucleoside-diphosphate red
100.0 PRK09101 376
nrdB ribonucleotide-diphosphate reductase subunit beta;
100.0 PTZ00211 330
ribonucleotide reductase small subunit; Provisional
100.0 COG0208 348
NrdF Ribonucleotide reductase, beta subunit [Nucleotide
100.0 PRK09614 325
nrdF ribonucleotide-diphosphate reductase subunit beta;
100.0 PRK13966 324
nrdF2 ribonucleotide-diphosphate reductase subunit beta
99.97 PRK13965 337
ribonucleotide-diphosphate reductase subunit beta; Prov
99.96 KOG1567 344
consensus
99.96 PRK13967 322
nrdF1 ribonucleotide-diphosphate reductase subunit beta
99.95 cd01049 288
RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferrit
99.94 pfam00268 281
Ribonuc_red_sm Ribonucleotide reductase, small chain.
99.88 cd07911 280
RNRR2_Rv0233_like Ribonucleotide Reductase R2-like prot
99.5 PRK08326 318
ribonucleotide-diphosphate reductase subunit beta; Vali
98.96 pfam11266 219
DUF3066 Protein of unknown function (DUF3066). This fam
92.45 cd07911 280
RNRR2_Rv0233_like Ribonucleotide Reductase R2-like prot
94.88 TIGR01647 835
ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPa
90.54
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Back Show alignment and domain information
Probab=100.00 E-value=1.4e-45 Score=299.52 Aligned_cols=125 Identities=68% Similarity=1.164 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 267 ~RDEslH~~f~~~li~~i~~EnP~l~t~e~~~~i~~~~~eAVelE~~f~~d~lp~gilGlna~~~~~YI~yiAdrRL~qL 346 (391)
T PRK07209 267 LRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELILEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQI 346 (391)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 20278899999999999874184227778999999999999999999999754688789899999999999998999987
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 978788987888689999834665732131003333430657789
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 125 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~D 125 (125)
T Consensus 347 Gl~~~y~~~~NPfpWm~e~idl~~~tNFFE~RVteYq~~g~l~wd 391 (391)
T PRK07209 347 GLDPLYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGGALSWD 391 (391)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 999878999998007998627332135133208776206657889
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=7.4e-42 Score=275.29 Aligned_cols=125 Identities=32% Similarity=0.582 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311229999999999999999985763087601-889999999999999999998
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~-Gl~~~~~~~Yiky~an~rL~~ 79 (125)
T Consensus 279 ~RDEglH~eFa~~Lf~~~~~e~p~i~~~~~~~~I~~ii~eAVeiE~~Fi~~alp~~~I~Gmn~~~m~qYIeyVADRlL~q 358 (410)
T PRK12759 279 IRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQ 358 (410)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 12013368999999999976371207778999999999999999999999746667789989999999999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHC-CCCCC
Q ss_conf 59787889878886899998346657321310033334306-57789
Q gi|254781006|r 80 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 125 (125)
Q Consensus 80 lGl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~-~~~~D 125 (125)
T Consensus 359 LG~~kiy~~~~NPf~wMe~il~~~~ktNFFE~RVtEYqkagv~g~wd 405 (410)
T PRK12759 359 LGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAGLTGSWD 405 (410)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCHH
T ss_conf 69998789999982799998767555775677688776277576488
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=3.1e-35 Score=235.05 Aligned_cols=121 Identities=27% Similarity=0.470 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999--6770003--112299999999999999999857630876-0188999999999999999
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANR 75 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~--~e~pe~~--~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~Yiky~an~ 75 (125)
T Consensus 236 ~rDE~~Hl~~~~~ii~~l~~~~e~pe~~~~~~e~~~~v~~m~~~ave~E~~wa~ylf~~G~iiGLn~~~l~~Yi~ylan~ 315 (376)
T PRK09101 236 ARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNI 315 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97199899999999999985389827889999999999999999999999999996669971688999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCHHHHHHHCC
Q ss_conf 99985978788987888689999834665-73213100333343065
Q gi|254781006|r 76 RCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAE 121 (125)
Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~~~~~-~~nFFE~r~t~Y~k~~~ 121 (125)
T Consensus 316 Rl~~lGl~~~y~~~~NPlpWm~~~~~~~~~q~a~qE~evtsY~~g~~ 362 (376)
T PRK09101 316 RMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 (376)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 99976999999999998458999865576746731201300112142
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.2e-34 Score=231.48 Aligned_cols=115 Identities=30% Similarity=0.648 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 204 ~RDE~~H~~f~~~l~~~l~~e~~-------~e~v~~~~~eAvelE~~f~~~~~~~~~iGl~~e~l~~Yi~y~An~rL~~L 276 (330)
T PTZ00211 204 SRDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKDAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVSL 276 (330)
T ss_pred HCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 82099999999999999756299-------99999999999999999999873678669999999999999999999987
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 97878898788868999983466573213100333343065778
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 124 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~ 124 (125)
T Consensus 277 G~~~~f~~-~nP~~w~~-~~~~~~ktnFFE~r~t~Y~kag~~~~ 318 (330)
T PTZ00211 277 GYEKIYNS-KNPFDWME-MISLQGKTNFFEKKVGEYQKAGVMSE 318 (330)
T ss_pred CCCCCCCC-CCCCHHHH-HHCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 99988899-99845899-85468888876677888877035645
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=100.00 E-value=4.8e-34 Score=227.80 Aligned_cols=121 Identities=40% Similarity=0.742 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 218 ~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~l 296 (348)
T COG0208 218 IRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNL 296 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 977999998999999999873838556888999999999999999999998735-6579988999999999987999975
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 978788987888689999834665732131003333430657
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 122 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~ 122 (125)
T Consensus 297 G~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY~~~~~~ 338 (348)
T COG0208 297 GLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQKGSVA 338 (348)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 999889987896579986234333577500464167761045
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=1.2e-32 Score=219.33 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 197 ~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~--~~Gl-~~~~~~Yi~y~an~~L~~l 273 (325)
T PRK09614 197 IRDESLHGYYIGYLFQAGLEELPELEQEELKDEIYDLLYELYENEEAYTELLYD--ILGL-TEDVKKYIRYNANKALMNL 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHHHHC
T ss_conf 987888899999999999863988557999999999999999999999999855--4787-8999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 97878898788868999983-4665732131003333430657-789
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVI-DLKKEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~-~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
T Consensus 274 G~~~~f~~~~~~p~w~~~~~~~~~~~tnFFE~r~t~Y~k~~~~~~~D 320 (325)
T PRK09614 274 GLEPLYPEEEVNPIWLNGLSNNADENHDFFEGKGTSYSKGSVEATFD 320 (325)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 99988999889977999988577804589878711323156678843
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=9.3e-31 Score=207.82 Aligned_cols=120 Identities=20% Similarity=0.294 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 194 ~RDEs~H~~~~~~l~~~~~~~~~~~~~~e~~~~i~~~~~~~v~~E~~~~~~l~~~--~GL~~-dv~~Yi~Y~ANrrL~~L 270 (324)
T PRK13966 194 IRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLYDE--VGLTE-DVKKFLRYNANKALMNL 270 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHH-HHHHHHHHHHHHHHHHC
T ss_conf 9837888879999999988854877689999999999999999999999987523--79489-99999999999999978
Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 978788987---8886899998346657321310033334306577
Q gi|254781006|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
T Consensus 271 Gl~~~fp~~~~~~nP~~~~~~~~~~~~~~nFFE~r~t~Y~~g~~~~ 316 (324)
T PRK13966 271 GYEALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVV 316 (324)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 8998899745788946699862256753786788700214165667
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=7e-29 Score=196.42 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 207 ~RDEslH~~~~~~~~~~~~~~~~~e~~~e~~~~v~~~~~~aVelE~~~~~~~~~~--~gl~-~~l~~YI~YiANrrL~~L 283 (337)
T PRK13965 207 LRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYAG--FDLA-EDAIRFSLYNAGKFLQNL 283 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHH-HHHHHHHHHHHHHHHHHC
T ss_conf 8704888889999999998742987789999999999999999999999999836--7769-999999999999999977
Q ss_pred CCCCCCCCCC-CCHHHHHHHHCCC--CCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 9787889878-8868999983466--5732131003333430657-789
Q gi|254781006|r 81 GLEPLFKYTE-NPFPWMSEVIDLK--KEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~~-nPl~W~~~~~~~~--~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
T Consensus 284 Gl~~~y~~~~~~~~P~~~~~~~~~~~~~~dFFE~r~t~Y~~g~~~~~~d 332 (337)
T PRK13965 284 GYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVMGITEETTD 332 (337)
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCCC
T ss_conf 9988899867888814589760478867785477721002100578823
>KOG1567 consensus
Back Show alignment and domain information
Probab=99.96 E-value=7e-29 Score=196.40 Aligned_cols=113 Identities=34% Similarity=0.625 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 40378999999999999967700031122999999999999999998576308760188999999999999999999859
Q gi|254781006|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 81 (125)
Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~lG 81 (125)
T Consensus 219 rdeglh~dFacll~~~l~~-------kp~~~ri~eII~eAV~IEqef~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG 291 (344)
T KOG1567 219 RDEGLHCDFACLLFSHLKK-------KPNEERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYIEFVADRLLVELG 291 (344)
T ss_pred HCCCCCCCHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 0247761199999999860-------897899999999999999999871165455345788999999999999999848
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 787889878886899998346657321310033334306577
Q gi|254781006|r 82 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 82 l~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
T Consensus 292 ~~K~Yn~-~NPFdfME-nISl~GKTNFFEKrVseYQk~~vMs 331 (344)
T KOG1567 292 NEKYYNA-ENPFDFME-NISLAGKTNFFEKRVSEYQKAGVMS 331 (344)
T ss_pred CCCEECC-CCCHHHHH-HHHHCCCCCHHHHHHHHHHHCHHCC
T ss_conf 5502057-88168888-7353254415776567765010024
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=3.3e-28 Score=192.30 Aligned_cols=119 Identities=21% Similarity=0.328 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 192 ~RDEslH~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~v~~Ei~~~~~l~~~--lGl~~-dv~~YI~YiANrrL~~L 268 (322)
T PRK13967 192 IRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLYDE--LGWTD-DVLPYMRYNANKALANL 268 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHHHHHHHC
T ss_conf 9828888999999999874523787789999999999999999999999998712--28689-99999989999999978
Q ss_pred CCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCHHHHHHHCCC
Q ss_conf 9787889878-88689999834--665732131003333430657
Q gi|254781006|r 81 GLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGAEL 122 (125)
Q Consensus 81 Gl~~~f~~~~-nPl~W~~~~~~--~~~~~nFFE~r~t~Y~k~~~~ 122 (125)
T Consensus 269 Gl~p~y~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~~~ 313 (322)
T PRK13967 269 GYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGTHQ 313 (322)
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 899999985577883668875768763268557886400432566
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain
Back Show alignment and domain information
Probab=99.94 E-value=4.3e-26 Score=179.45 Aligned_cols=100 Identities=41% Similarity=0.762 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 187 ~rDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eav~~E~~~~~~~~~~~i~gl~~~~~~~yi~y~an~~l~~l 266 (288)
T cd01049 187 SRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENL 266 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999999999886298856566799999999999999999999980688689899999999999999999977
Q ss_pred CCCCCCCCC-CCCHHHHHHHH
Q ss_conf 978788987-88868999983
Q gi|254781006|r 81 GLEPLFKYT-ENPFPWMSEVI 100 (125)
Q Consensus 81 Gl~~~f~~~-~nPl~W~~~~~ 100 (125)
T Consensus 267 G~~~~f~~~~~nP~~~~~~~~ 287 (288)
T cd01049 267 GLEKLFNVEDKNPFDWMELIS 287 (288)
T ss_pred CCCCCCCCCCCCCHHHHHHHC
T ss_conf 999999999999777998751
Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
>pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain
Back Show alignment and domain information
Probab=99.88 E-value=3.4e-22 Score=155.77 Aligned_cols=88 Identities=31% Similarity=0.460 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 191 ~RDE~lH~~f~~~l~~~~~~~~-----~~~~~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~L 265 (281)
T pfam00268 191 SRDEALHTDAACLLYNNYLGLE-----KPEPKRIYKLFREAVEIEIEFIEAAAPVDVHGMNVRAIKQYIEFSADRLLVAI 265 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9989999999999999998735-----85499999999999999999999867788389799999999999999999977
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 97878898788868
Q gi|254781006|r 81 GLEPLFKYTENPFP 94 (125)
Q Consensus 81 Gl~~~f~~~~nPl~ 94 (125)
T Consensus 266 G~~~~f~~-~NPf~ 278 (281)
T pfam00268 266 GYKPLFNV-PNPFF 278 (281)
T ss_pred CCCCCCCC-CCCCC
T ss_conf 99998999-89899
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain
Back Show alignment and domain information
Probab=99.50 E-value=1.4e-13 Score=103.36 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 187 ~RDE~~H~~fg~~l~~~l~~e~p~~~-d~~~e~~~el~~~av~~~-~~~~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i 264 (280)
T cd07911 187 GDDESRHIAWGTFTCRRLVAADDANW-DVFEERMNELVPHALGLI-DEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999998695678-999999999999999999-9998515655668899999999999999874488
Q ss_pred CCCCCC
Q ss_conf 978788
Q gi|254781006|r 81 GLEPLF 86 (125)
Q Consensus 81 Gl~~~f 86 (125)
T Consensus 265 ~~~~~~ 270 (280)
T cd07911 265 ERARGQ 270 (280)
T ss_pred HHHCCC
T ss_conf 785299
Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Back Show alignment and domain information
Probab=98.96 E-value=4.4e-09 Score=76.07 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
T Consensus 206 ~RDE~rHi~~g~~~~~rlv~e~~~~~-~~~~e~~~el~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~ya~~~~~~Rl~~i 283 (318)
T PRK08326 206 GDDESRHIAFGTYTCRRLVAADDSNW-DVFEERMNELIPLALGL-IDEGFALYDVIPFGLSKDEFMQYAADKGQRRLGTI 283 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 61599999999999999986088889-99999999999999877-52441036668889998999999999998889999
Q ss_pred C---CCCCCCC--CCCCHHHHHHH
Q ss_conf 9---7878898--78886899998
Q gi|254781006|r 81 G---LEPLFKY--TENPFPWMSEV 99 (125)
Q Consensus 81 G---l~~~f~~--~~nPl~W~~~~ 99 (125)
T Consensus 284 ~~ar~~~~~~~~~~~~~~~~~~~~ 307 (318)
T PRK08326 284 SRARGRPLAEIDLDYSPLQLEDTF 307 (318)
T ss_pred HHHCCCCCHHCCCCCCHHHHHHHH
T ss_conf 974199700305778989999886
>pfam11266 DUF3066 Protein of unknown function (DUF3066)
Back Show alignment and domain information
Probab=92.45 E-value=0.81 Score=25.81 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125)
T Consensus 131 VkDEy~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 202 (219)
T pfam11266 131 VKDEYTHLNFGEEWLKANF--------ETSKEELEEANRENLPLVWKMLNQVADDAAVLGMDKEALVEDFMIAYGEALTN 202 (219)
T ss_pred HHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7447776026899999999--------99999999988861639999999998789997788999999999999999997
Q ss_pred CCCCC
Q ss_conf 59787
Q gi|254781006|r 80 IGLEP 84 (125)
Q Consensus 80 lGl~~ 84 (125)
T Consensus 203 IGf~~ 207 (219)
T pfam11266 203 IGFTT 207 (219)
T ss_pred CCCCH
T ss_conf 59758
This family of proteins with unknown function appears to be restricted to Cyanobacteria.
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain
Back Show alignment and domain information
Probab=94.88 E-value=0.056 Score=32.89 Aligned_cols=57 Identities=9% Similarity=-0.054 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 299999999999999999857630876018899999999999999999985978788
Q gi|254781006|r 30 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 86 (125)
Q Consensus 30 ~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~lGl~~~f 86 (125)
T Consensus 211 ~~d~~~e~~~el~~~av~~~~~~~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i~~~ 267 (280)
T cd07911 211 NWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYIERA 267 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999999998515655668899999999999999874488785
Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea
Back Show alignment and domain information
Probab=90.54 E-value=0.35 Score=28.03 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=21.6
Q ss_pred HHHHHHHCCCCCCCCCCC-----------CCHHHHHHH
Q ss_conf 999999859787889878-----------886899998
Q gi|254781006|r 73 ANRRCHQIGLEPLFKYTE-----------NPFPWMSEV 99 (125)
Q Consensus 73 an~rL~~lGl~~~f~~~~-----------nPl~W~~~~ 99 (125)
T Consensus 7 A~~RL~~yGpN~l~Ekk~~~ll~FL~f~WnPlsWvmE~ 44 (835)
T TIGR01647 7 AKKRLAKYGPNELPEKKVSPLLKFLSFMWNPLSWVMEA 44 (835)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 99999742888785534225999977520724899999
The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Homologous Domains in SCOP and MMDB Database
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value Target 125
ribonucleotide-diphosphate reductase subunit beta [Cand
d1syya_ 317
a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia tr
2e-21 d1mxra_ 339
a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia
2e-17 d1jk0a_ 334
a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeas
5e-16 d1w68a_ 281
a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus m
4e-13 d3dhza1 284
a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Coryne
4e-11 d1jk0b_ 285
a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeas
4e-11 d1r2fa_ 283
a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella t
4e-10
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317
Back Hide information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Chlamydia trachomatis [TaxId: 813]
Score = 94.8 bits (235), Expect = 2e-21
Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++HLNFGID+IN IK ENP +WT E QQ+ ++ A LEI YA + +P+G +GL
Sbjct: 223 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGL 282
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
A Y+Q IA+RR +IGL+P++ T+NPFPWM
Sbjct: 283 RASMFIDYVQHIADRRLERIGLKPIYH-TKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Escherichia coli [TaxId: 562]
Score = 81.4 bits (200), Expect = 2e-17
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG 56
RDE+LHL ++N ++ E +Q+ + +A E +A G
Sbjct: 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG 294
Query: 57 -FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 98
+GLN QY+++I N R +GL+ F+ NP PW++
Sbjct: 295 SMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINT 337
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]
Score = 76.7 bits (188), Expect = 5e-16
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + +K + ++ ++ EA +E Y + +P +G+
Sbjct: 245 CRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYFLDALPVALLGM 297
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
NA QY++F+A+R G + +K ENPF +M
Sbjct: 298 NADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (163), Expect = 4e-13
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + + + R ++ A +E + E +P +G+
Sbjct: 197 SRDEGLHCDFACLMFKHLVHKPAEQRV-------REIITNAVRIEQEFLTEALPVKLIGM 249
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93
N +QY++F+A+R ++G +F+ ENPF
Sbjct: 250 NCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Corynebacterium ammoniagenes [TaxId: 1697]
Score = 60.5 bits (146), Expect = 4e-11
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDES+H + Q + +E++ + ++++ EI Y + +G
Sbjct: 186 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGW 243
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 95
++++++ AN+ + +G E LF E P
Sbjct: 244 TE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]
Score = 60.6 bits (146), Expect = 4e-11
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 22 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 81
HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G
Sbjct: 221 FAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 280
Query: 82 LEPLF 86
E +
Sbjct: 281 NEKYY 285
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Salmonella typhimurium [TaxId: 90371]
Score = 57.1 bits (137), Expect = 4e-10
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++H + + + +E + + +L E EI Y +
Sbjct: 184 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAET---G 240
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 97
+ ++ + AN+ +G E LF NP +S
Sbjct: 241 WVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability Target 125
ribonucleotide-diphosphate reductase subunit beta [Cand
d1syya_ 317
Ribonucleotide reductase R2 {Chlamydia trachomatis [Tax
99.95 d1mxra_ 339
Ribonucleotide reductase R2 {Escherichia coli [TaxId: 5
99.94 d1jk0a_ 334
Ribonucleotide reductase R2 {Baker's yeast (Saccharomyc
99.91 d3dhza1 284
Ribonucleotide reductase R2 {Corynebacterium ammoniagen
99.87 d1r2fa_ 283
Ribonucleotide reductase R2 {Salmonella typhimurium [Ta
99.84 d1w68a_ 281
Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxI
99.83 d1jk0b_ 285
Ribonucleotide reductase R2 {Baker's yeast (Saccharomyc
99.79 d2oc5a1 222
Hypothetical protein PMT1231 {Prochlorococcus marinus [
93.32
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Chlamydia trachomatis [TaxId: 813]
Probab=99.95 E-value=1.5e-27 Score=185.58 Aligned_cols=95 Identities=52% Similarity=0.983 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.|++.|++.+++|+|+++++++.++|++|+++||++|++|++++|+.|++|||++++++||+|+||+||.+|
T Consensus 223 ~RDE~lH~~f~~~l~~~l~~e~~e~~~~~~~~~i~el~~eav~~E~~~~~~~~~~~~~Gl~~~~l~~Yv~y~an~~L~~L 302 (317)
T d1syya_ 223 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERI 302 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 81188786699999999855059998633599999999999999999999983798789999999999999999999977
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 9787889878886899
Q gi|254781006|r 81 GLEPLFKYTENPFPWM 96 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~ 96 (125)
|++|+|++ +||+|||
T Consensus 303 G~~~~f~~-~NP~~wm 317 (317)
T d1syya_ 303 GLKPIYHT-KNPFPWM 317 (317)
T ss_dssp TCCCSSCC-CCSCTTC
T ss_pred CCCCCCCC-CCCCCCC
T ss_conf 99999989-9998979
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.6e-27 Score=183.26 Aligned_cols=100 Identities=28% Similarity=0.489 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 940378999999999999967700----03112299999999999999999857630876-0188999999999999999
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANR 75 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe----~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~Yiky~an~ 75 (125)
+|||++|+.|++.++++++++.+. .++++++++|++++++||++|.+|++++++.| ++|||++++++||+|+||+
T Consensus 235 ~RDE~lH~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~l~Gl~~~~~~~yi~y~an~ 314 (339)
T d1mxra_ 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNI 314 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 73237777999999999985377166777678999999999999999999999997047981899999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9998597878898788868999983
Q gi|254781006|r 76 RCHQIGLEPLFKYTENPFPWMSEVI 100 (125)
Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~ 100 (125)
||.+||++|+|++..||+|||+.|+
T Consensus 315 ~L~~lG~~~~f~~~~NP~~w~~~~l 339 (339)
T d1mxra_ 315 RMQAVGLDLPFQTRSNPIPWINTWL 339 (339)
T ss_dssp HHHHTTCCCCSCCCCCSCGGGGGTC
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9997889999999999868898639
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]
Probab=99.91 E-value=1.5e-24 Score=167.35 Aligned_cols=89 Identities=30% Similarity=0.521 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.|++.|++.++.+ ...+.|++++++||++|.+|+++++|.+++|||+++|++||+|+||+||.+|
T Consensus 245 ~RDE~lH~~f~~~l~~~l~~~-------~~~~~i~~i~~eAvelE~~~~~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~L 317 (334)
T d1jk0a_ 245 CRDEGLHTDFACLLFAHLKNK-------PDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAF 317 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCSSC-------CCHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999985123-------0489999999999999999999857898689899999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHH
Q ss_conf 97878898788868999
Q gi|254781006|r 81 GLEPLFKYTENPFPWMS 97 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~ 97 (125)
|++|+|++ +||+|||+
T Consensus 318 G~~~~f~~-~NP~~wme 333 (334)
T d1jk0a_ 318 GNKKYYKV-ENPFDFME 333 (334)
T ss_dssp TCCCSSCC-CCCCGGGG
T ss_pred CCCCCCCC-CCCCCCCC
T ss_conf 99988999-99988646
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=99.87 E-value=2.1e-22 Score=154.22 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.|++.+++.++++.|+.+++++++++++++++||++|.+|++++|+. +|++. ++++||+|+||+||.+|
T Consensus 186 ~RDE~lH~~f~~~l~~~~~~e~~~~~~~e~~~~i~~~~~~ave~E~~~~~~~~~~--~gl~~-~~~~yiky~an~~L~~l 262 (284)
T d3dhza1 186 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTE-DVKRFLRYNANKALNNL 262 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHHHHHHHC
T ss_conf 9877777789999998750413255567779999999999999999999998742--57499-99999999999999978
Q ss_pred CCCCCCCCCCC-CHHHHHHHHC
Q ss_conf 97878898788-8689999834
Q gi|254781006|r 81 GLEPLFKYTEN-PFPWMSEVID 101 (125)
Q Consensus 81 Gl~~~f~~~~n-Pl~W~~~~~~ 101 (125)
|++|+|+..+. .-||+...++
T Consensus 263 G~~~~f~~~~~~~nP~~~~~~~ 284 (284)
T d3dhza1 263 GYEGLFPTDETKVSPAILSSLS 284 (284)
T ss_dssp TCCCSSCGGGCCCCHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHCCC
T ss_conf 8999999855778878882249
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=7.1e-21 Score=144.98 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.|++.|+++++.+.|+.+++++++.+++++++||++|.+|++++++.+. ..+++++||+|+||+||++|
T Consensus 184 ~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~v~~~~~e~v~~E~~~~~~~~~~~~---~~~~~~~yiky~an~~L~~l 260 (283)
T d1r2fa_ 184 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAETG---WVNDVKAFLCYNANKALMNL 260 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS---CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHC
T ss_conf 998875356899999999873358888668999999999999999999999711678---79999999999999999978
Q ss_pred CCCCCCCCC-CCCHHHHHHHHC
Q ss_conf 978788987-888689999834
Q gi|254781006|r 81 GLEPLFKYT-ENPFPWMSEVID 101 (125)
Q Consensus 81 Gl~~~f~~~-~nPl~W~~~~~~ 101 (125)
|++|+|+.. .++-||+..+++
T Consensus 261 G~~~~f~~~~~~~NP~~~~~l~ 282 (283)
T d1r2fa_ 261 GYEALFPPEMADVNPAILAALS 282 (283)
T ss_dssp TCCCCSCTTTSCCCHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHCCCC
T ss_conf 8998999877899913541579
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=9e-21 Score=144.36 Aligned_cols=85 Identities=29% Similarity=0.615 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.+++.++++++.+ ..++.+++++++||++|.+|++++++.+++|||++++++||+|+||+||++|
T Consensus 197 ~rDE~~H~~~~~~l~~~l~~e-------~~~~~v~~~~~~av~lE~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~l 269 (281)
T d1w68a_ 197 SRDEGLHCDFACLMFKHLVHK-------PAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 269 (281)
T ss_dssp HHHHHHHHHHHHHHHHTCSSC-------CCHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 876788888999998750122-------0389999999999999999999857788689899999999999999999977
Q ss_pred CCCCCCCCCCCCH
Q ss_conf 9787889878886
Q gi|254781006|r 81 GLEPLFKYTENPF 93 (125)
Q Consensus 81 Gl~~~f~~~~nPl 93 (125)
|++|+|++ +||+
T Consensus 270 G~~~~f~~-~NPf 281 (281)
T d1w68a_ 270 GFNKIFRV-ENPF 281 (281)
T ss_dssp TSCCSSCC-CCCC
T ss_pred CCCCCCCC-CCCC
T ss_conf 89998999-9958
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]
Probab=99.79 E-value=7.5e-20 Score=138.73 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.|++.+++.++. +..++.|++++++||++|.+|++++++.+++|||++++++||+|+||+||.+|
T Consensus 207 ~RDE~lH~~f~~~l~~~l~~-------~~~~~~i~~l~~eAv~lE~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~l 279 (285)
T d1jk0b_ 207 CRDRGAYTDFSCLLFAHLRT-------KPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGF 279 (285)
T ss_dssp HHHHHHHHHHHHHHHHTCSS-------CCCHHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999899899998752-------45499999999999999999999974787689799999999999999999987
Q ss_pred CCCCCC
Q ss_conf 978788
Q gi|254781006|r 81 GLEPLF 86 (125)
Q Consensus 81 Gl~~~f 86 (125)
|++|+|
T Consensus 280 G~~~~y 285 (285)
T d1jk0b_ 280 GNEKYY 285 (285)
T ss_dssp TCCCCC
T ss_pred CCCCCC
T ss_conf 699999
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: PMT1231-like
domain: Hypothetical protein PMT1231
species: Prochlorococcus marinus [TaxId: 1219]
Probab=93.32 E-value=0.24 Score=26.22 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125)
|+||.+|+.||..-++.-. +.+++++.+.-++..-+-..-.+.+-++ .++|+.++.+.+=.--.-...|..
T Consensus 135 VkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 206 (222)
T d2oc5a1 135 VKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTE 206 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7447776015899999999--------99999999988861639999999999789997688999999999999999997
Q ss_pred CCCC
Q ss_conf 5978
Q gi|254781006|r 80 IGLE 83 (125)
Q Consensus 80 lGl~ 83 (125)
||+.
T Consensus 207 IGf~ 210 (222)
T d2oc5a1 207 IGFN 210 (222)
T ss_dssp HTCC
T ss_pred CCCC
T ss_conf 5975
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
>2rcc_A (A:150-346) Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}Length = 197
Back Hide alignment and structure
Score = 118 bits (296), Expect = 3e-28
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH+ ++ ++ +E P L T+E + +T L +A LE + + G+
Sbjct: 68 NRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGI 127
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 118
N E Y+ FIAN+R Q+G E + NP W+ D+ K +FFE + +Y +
Sbjct: 128 NPEDXETYISFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAK 187
Query: 119 G-AELKWD 125
A+ +D
Sbjct: 188 VSADNGFD 195
>1r2f_A (A:129-319) Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium}Length = 191
Back Show alignment and structure
Score = 114 bits (286), Expect = 5e-27
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++H + + + +E + + +L E EI Y
Sbjct: 61 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETG 117
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 117
+ ++ + AN+ +G E LF NP + + + +FF + Y
Sbjct: 118 WVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYV 177
Query: 118 QGAEL-KWD 125
G + D
Sbjct: 178 MGKTVETED 186
>1syy_A (A:) Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis}Length = 346
Back Show alignment and structure
Score = 111 bits (277), Expect = 4e-26
Identities = 71/124 (57%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++HLNFGID+IN IK ENP +WT E QQ+ ++ A LEI YA + +P+G +GL
Sbjct: 224 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGL 283
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
A Y+Q IA+RR +IGL+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A
Sbjct: 284 RASMFIDYVQHIADRRLERIGLKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAA 342
Query: 121 ELKW 124
L W
Sbjct: 343 SLTW 346
>3dhz_A (A:139-329) Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes}Length = 191
Back Show alignment and structure
Score = 110 bits (277), Expect = 5e-26
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDES+H + Q + +E++ + ++++ EI Y +
Sbjct: 61 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG--- 117
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 117
++++++ AN+ + +G E LF + +P S + + +FF + Y
Sbjct: 118 WTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYV 177
Query: 118 QG-AELKWD 125
G AE D
Sbjct: 178 IGKAEDTTD 186
>1jk0_B (B:147-345) RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae}Length = 199
Back Show alignment and structure
Score = 104 bits (261), Expect = 4e-24
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RD + +F + ++ + ++ ++ EA +E Y ++P G+
Sbjct: 71 CRDRGAYTDFSCLLFAHLRTKPNPKIIEK-------IITEAVEIEKEYYSNSLPVEKFGM 123
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
+ S Y++F+A+ G E + NPF +M +V K FFE +V++YQ+ +
Sbjct: 124 DLKSIHTYIEFVADGLLQGFGNEKYYN-AVNPFEFMEDVATAGK-TTFFEKKVSDYQKAS 181
Query: 121 ELKWD 125
++
Sbjct: 182 DMSKS 186
>1jk0_A (A:1-103,A:228-419) RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae}Length = 295
Back Show alignment and structure
Score = 103 bits (259), Expect = 7e-24
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + +K + ++ ++ EA +E Y + +P +G+
Sbjct: 166 CRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYFLDALPVALLGM 218
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NA QY++F+A+R G + + ENPF +M + K NFFE RV++YQ+
Sbjct: 219 NADLMNQYVEFVADRLLVAFGNKKYY-KVENPFDFMENISLAGK-TNFFEKRVSDYQKAG 276
Query: 121 ELKW 124
+
Sbjct: 277 VMSK 280
>1h0o_A (A:219-390) Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus}Length = 172
Back Show alignment and structure
Score = 101 bits (252), Expect = 5e-23
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + + + +E ++ A +E + E +P +G+
Sbjct: 46 SRDEGLHCDFACLMFKHLVHKPAEQRVRE-------IITNAVRIEQEFLTEALPVKLIGM 98
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
N +QY++F+A+R ++G ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 99 NCTLMKQYIEFVADRLMLELGFNK-IFRVENPFDFM-ENISLEGKTNFFEKRVGEYQRMG 156
Query: 121 ELKWD 125
+
Sbjct: 157 VMSNS 161
>1mxr_A (A:) Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli}Length = 375
Back Show alignment and structure
Score = 99.5 bits (247), Expect = 1e-22
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG 56
RDE+LHL ++N ++ +E +Q+ + +A E +A G
Sbjct: 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG 294
Query: 57 -FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVT 114
+GLN QY+++I N R +GL+ F+ NP PW++ + + E V+
Sbjct: 295 SMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVS 354
Query: 115 EYQQGA 120
Y G
Sbjct: 355 SYLVGQ 360
>2p1i_A (A:162-349) Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}Length = 188
Back Show alignment and structure
Score = 98.9 bits (246), Expect = 2e-22
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + + ++ + P + ++ EA +E ++ E++P +G+
Sbjct: 62 SRDEGLHTDFNCLIYSLLENKLPENVVQN-------IVKEAVEVERSFICESLPCDLIGM 114
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
N+ QY++F+A+R +G +F ++NPF WM ++I L+ + NFFE RV +YQ+
Sbjct: 115 NSRLMSQYIEFVADRLLECLGCSKVFH-SKNPFNWM-DLISLQGKTNFFEKRVADYQKSG 172
Query: 121 ELKWD 125
+
Sbjct: 173 VMAQR 177
>2o1z_A (A:161-311) Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}Length = 151
Back Show alignment and structure
Score = 86.5 bits (214), Expect = 1e-18
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + + ++ + P + ++ EA +E ++ E++P +G+
Sbjct: 62 SRDEGLHTDFNCLIYSLLENKLPEEVVQN-------IVKEAVEVERSFICESLPCDLIGM 114
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
N+ QY++F+A+R +G +F +NPF WM
Sbjct: 115 NSRLMSQYIEFVADRLLECLGSPKIFH-AKNPFNWM 149
>3ee4_A (A:) Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis}Length = 323
Back Show alignment and structure
Score = 81.8 bits (201), Expect = 3e-17
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 5/120 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
DE H+ +G + + W F+ + ++ A L + L
Sbjct: 208 GDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDL 266
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
+ QY RR I + + E F + +
Sbjct: 267 SKDDFLQYSTDKGMRRFGTISNARGR----PVAEIDVDYSPAQLEDTFADEDRRTLAAAS 322
>3chh_A (A:) P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_ALength = 336
Back Show alignment and structure
Score = 60.3 bits (145), Expect = 8e-11
Identities = 10/111 (9%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE+ H + ++V+ ++ + + L +++ + G+
Sbjct: 224 LRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLELNA--AGI 281
Query: 61 NAPSC-EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 110
++ A + + + L +F
Sbjct: 282 RGAEEIVGDLRSTAGGTRLVRDFSG-------ARKMVEQ-LGLDDAVDFDF 324
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
>2rcc_A (A:150-346) Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Back Hide alignment and structure
Probab=100.00 E-value=2.7e-35 Score=235.04 Aligned_cols=125 Identities=29% Similarity=0.491 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.+++.+|+++++|+|+.++++++++|++|+++||++|++|++++++.+++|++++.+++||+|+||+||++|
T Consensus 68 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yiky~an~~L~~l 147 (197)
T 2rcc_A 68 NRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQL 147 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 74488999889999998754066321001489999999999999999999970676579889999999999999999977
Q ss_pred CCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 97878898-788868999983466-5732131003333430657-789
Q gi|254781006|r 81 GLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~-~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++ .+||+|||..+++.. +++||||+|+|+|++|+.. +||
T Consensus 148 G~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~d 195 (197)
T 2rcc_A 148 GXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 195 (197)
T ss_dssp TCCCSCTTCCSCSCTTC-------------------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 999899987799588999865347653588888768751066778866
>1syy_A (A:) Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis}
Back Show alignment and structure
Probab=100.00 E-value=1.9e-33 Score=223.79 Aligned_cols=123 Identities=57% Similarity=1.023 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.||+.+++.++.|.|+.+++++++.+++++.+||++|.+|++++++.+++|++++.+++|++|+||+||.+|
T Consensus 224 ~RDE~~H~~f~~~l~~~~~~e~~~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yv~~~an~~L~~l 303 (346)
T 1syy_A 224 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERI 303 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 52156788899999999865009875213899999999999999999999966788789899999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 97878898788868999983466573213100333343065778
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 124 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~ 124 (125)
|++|+|++ +||+||+...+++.+++||||+|+|+|+||++++|
T Consensus 304 G~~~~~~~-~np~~w~~~~~~~~~~~nfFe~~~~~Y~~~~~~~w 346 (346)
T 1syy_A 304 GLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346)
T ss_dssp TCCCSSCC-CCSCTTC----------------------------
T ss_pred CCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 99998999-99647799873867775778897331365576889
>1r2f_A (A:129-319) Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium}
Back Show alignment and structure
Probab=99.97 E-value=1.2e-31 Score=212.74 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.++++++.|+|+++++++.++|++|+++||++|.+|++++++ .|++++++++||+|+||+||.+|
T Consensus 61 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---~g~~~e~~~~yi~y~an~rl~~l 137 (191)
T 1r2f_A 61 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETGWVNDVKAFLCYNANKALMNL 137 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 988989999999999999985448888789999999999999999999998743---35769999999999999999977
Q ss_pred CCCCCCCCC-CC--CHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 978788987-88--8689999834665732131003333430657-789
Q gi|254781006|r 81 GLEPLFKYT-EN--PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~-~n--Pl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++. +| |++|+...+++.+++||||+|+|+|+||+.. +||
T Consensus 138 G~~~~f~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191)
T 1r2f_A 138 GYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETED 186 (191)
T ss_dssp TCCCCSCTTTSCCCHHHHHHHCC--------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 9998889766888965899865145745888778755412057788832
>3dhz_A (A:139-329) Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes}
Back Show alignment and structure
Probab=99.97 E-value=1e-31 Score=213.31 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.|+++++.|+|+.+++++.++|++++++||++|.+|++++++ .|++++++++||+|+||+||++|
T Consensus 61 ~rDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~---~g~~~~~~~~yi~y~an~~L~~l 137 (191)
T 3dhz_A 61 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD---DLGWTEDVKRFLRYNANKALNNL 137 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 620588999999999999763889889988999999999999999999998864---56549999999999999999977
Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 978788987---888689999834665732131003333430657-789
Q gi|254781006|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++. .||++|+...+++.+++||||+|||+|+||+.. +||
T Consensus 138 Gl~~~y~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191)
T 3dhz_A 138 GYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTD 186 (191)
T ss_dssp TCCCSSCGGGCCCCHHHHHHHC---------------------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999899877889837898753024656787747744340022577754
>1jk0_A (A:1-103,A:228-419) RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Back Show alignment and structure
Probab=99.97 E-value=2.1e-31 Score=211.34 Aligned_cols=114 Identities=32% Similarity=0.563 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.|++.||+.++.+. .++.+.+++++||++|.+|++++++.+++|++++++++||+|+||+||.+|
T Consensus 166 ~RDE~lH~~f~~~L~~~l~~e~-------~~e~v~el~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYIkY~AN~~L~~L 238 (295)
T 1jk0_A 166 CRDEGLHTDFACLLFAHLKNKP-------DPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAF 238 (295)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCC-------CHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9899999999999999864032-------188999999999999999999853788579999999999999999999976
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++++|++ +||+|||+..+ ..+++||||+||++|+||+..+
T Consensus 239 G~e~~F~~-~NP~~wme~~~-d~~ktNFFE~rvs~YqK~~~~~ 279 (295)
T 1jk0_A 239 GNKKYYKV-ENPFDFMENIS-LAGKTNFFEKRVSDYQKAGVMS 279 (295)
T ss_dssp TCCCSSCC-CCCCGGGGC-------------------------
T ss_pred CCCCCCCC-CCCCHHHHHHC-CCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99987999-99825888724-5788787678788787624776
>2p1i_A (A:162-349) Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
Back Show alignment and structure
Probab=99.97 E-value=1.9e-31 Score=211.56 Aligned_cols=114 Identities=31% Similarity=0.617 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.+++.++.+.| ++.+++|+++||++|++|++++++.+++|+|++++++||+|+||+||++|
T Consensus 62 ~rDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~gi~~~~~~~yi~y~an~~L~~l 134 (188)
T 2p1i_A 62 SRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (188)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 66677768899899999982498-------99999899999999999999970435212006779999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|+. +||+|||+.+. ..+++||||+|+|+|+||+..+
T Consensus 135 G~~~~f~~-~nP~~w~~~~~-~~~~~nFFE~~~t~Y~k~~~~~ 175 (188)
T 2p1i_A 135 GCSKVFHS-KNPFNWMDLIS-LQGKTNFFEKRVADYQKSGVMA 175 (188)
T ss_dssp TCCCSSCC-CCSCCC----------------------------
T ss_pred CCCCCCCC-CCCCCCHHHCC-CCCCCCCCCCCHHHHHCCCCCC
T ss_conf 99999999-99965055515-6745578877765630366667
>1h0o_A (A:219-390) Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus}
Back Show alignment and structure
Probab=99.97 E-value=3.9e-31 Score=209.70 Aligned_cols=114 Identities=32% Similarity=0.639 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.+++.++.|.| +..+++|+++||++|.+|++++++.+++|++++++++||+|+||+||.+|
T Consensus 46 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~L 118 (172)
T 1h0o_A 46 SRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 118 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899999999999998750238-------99999999998999999999966897479799999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|++ +||+||++.+ ..++++||||+|+|+|+||+..+
T Consensus 119 G~~~~y~~-~nP~~~~~~~-~~~~~~nFFe~~~t~Y~k~~~~~ 159 (172)
T 1h0o_A 119 GFNKIFRV-ENPFDFMENI-SLEGKTNFFEKRVGEYQRMGVMS 159 (172)
T ss_dssp TCCCSSCC-CCSCGGGC--------------------------
T ss_pred CCCCCCCC-CCCHHHHHHC-CCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99998999-9985789861-25677577656578664356678
>1jk0_B (B:147-345) RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Back Show alignment and structure
Probab=99.97 E-value=1.4e-31 Score=212.38 Aligned_cols=114 Identities=23% Similarity=0.474 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.+++.|+++++++.| ++.+++++++||++|.+|++++++.+++|++++++++||+|+||+||++|
T Consensus 71 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~l 143 (199)
T 1jk0_B 71 CRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGF 143 (199)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 74799999999999998612211-------77999999999999999998544545337589999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|+. +||+|||..+++ .+++||||+|+|+|+||++.+
T Consensus 144 G~~~~f~~-~nP~~~~~~~~~-~~~~nFFe~~~t~Y~k~~~~~ 184 (199)
T 1jk0_B 144 GNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDMS 184 (199)
T ss_dssp TCCCCC-------------------------------------
T ss_pred CCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCC
T ss_conf 99987899-997579998737-577655677655310244566
>1mxr_A (A:) Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli}
Back Show alignment and structure
Probab=99.97 E-value=1.6e-30 Score=205.96 Aligned_cols=125 Identities=26% Similarity=0.370 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311----229999999999999999985763087-60188999999999999999
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 75 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~----~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~ 75 (125)
+|||++|+.|++.+++.++.+.|+.+++ ++.+.+++++++||++|.+|++++++. +++|++++.+++||+|+||+
T Consensus 235 ~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~i~g~~~~~~~~yi~y~an~ 314 (375)
T 1mxr_A 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNI 314 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 85399999999999999984279635889889999999999999999999999998457885898999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCCC-CC
Q ss_conf 9998597878898788868999983466-57321310033334306577-89
Q gi|254781006|r 76 RCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK-WD 125 (125)
Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~~-~D 125 (125)
||.+||++++|+..+||+||+..+++.. +++||||+|+|+|++|+..+ ||
T Consensus 315 ~L~~lG~~~~f~~~~~p~~~~~~~~~~~~~~~nFFe~~~t~Y~~~~~~~~~d 366 (375)
T 1mxr_A 315 RMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 366 (375)
T ss_dssp HHHHTTCCCCSCCCCCSCGGGGGTC---------------------------
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 9997799999999999856899987138875487668710012335567677
>3ee4_A (A:) Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis}
Back Show alignment and structure
Probab=99.92 E-value=2.1e-25 Score=174.86 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.||+.+++.++.|.|+.+ ++..+.+++++.+||++|.+|+.++++.+++|++++.+.+|++|++|+||..+
T Consensus 208 ~rDE~~H~~f~~~~~~~l~~e~~e~~-~~~~e~~~~~~~~~v~~e~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~l~~l 286 (323)
T 3ee4_A 208 GDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTI 286 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 80488999999999999986395030-69999999999999999999988627776679999999999999999987994
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 97878898788868999983466573213100333343065
Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 121 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~ 121 (125)
|+++.|+...+|++|+. ..+++||||+|+|+|+|||+
T Consensus 287 g~~~~~~~~~~~~~~~~----~~~~~nFFe~~~~~Y~~~~a 323 (323)
T 3ee4_A 287 SNARGRPVAEIDVDYSP----AQLEDTFADEDRRTLAAASA 323 (323)
T ss_dssp HTTTTCCGGGTCC----------------------------
T ss_pred CCCCCCCHHHCCCCCCH----HHHHHHHHHHHHHHHHHHCC
T ss_conf 22346984433676897----99999988989999876149
>3chh_A (A:) P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Back Show alignment and structure
Probab=98.76 E-value=2.6e-09 Score=77.04 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899-99999999999999998
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-PSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~-~~~~~Yiky~an~rL~~ 79 (125)
+|||+.|+.|++.+++.+..+.|....+.+.+.+..++..++..|..+..+++ ..+|++. +.+.+|++|.+|+++..
T Consensus 224 ~rDE~~H~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~Gl~~~~~~~~~~~~~~~~~~~~ 301 (336)
T 3chh_A 224 LRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLEL--NAAGIRGAEEIVGDLRSTAGGTRLV 301 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCTHHHHHHH--HHHTCTTHHHHHHHCC-------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 99999999999999999998699999999999999999999861324779999--8869987999999872958789999
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCC
Q ss_conf 59787889878886899998-346657321310
Q gi|254781006|r 80 IGLEPLFKYTENPFPWMSEV-IDLKKEKNFFET 111 (125)
Q Consensus 80 lGl~~~f~~~~nPl~W~~~~-~~~~~~~nFFE~ 111 (125)
+|++ ++++|+++. +.+.-...|+++
T Consensus 302 ~~~~-------~~~~~l~~~Gl~~~~~~~~~~~ 327 (336)
T 3chh_A 302 RDFS-------GARKMVEQLGLDDAVDFDFPER 327 (336)
T ss_dssp CBCH-------HHHHHHHHTTCTTTCCCCCCCC
T ss_pred HHHH-------HHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9888-------8999999848988999986768
>2o1z_A (A:161-311) Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Back Show alignment and structure
Probab=99.90 E-value=3e-24 Score=167.89 Aligned_cols=89 Identities=29% Similarity=0.603 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.|++.++++++.+.| ++.+.+|+++||++|.+|++++++.+.+|++++++++||+|+||+||.+|
T Consensus 62 ~RDE~lH~~~~~~l~~~l~~e~~-------~~~~~~~~~eave~E~~~~~~~~~~~~~g~~~~~i~~yi~y~an~~l~~L 134 (151)
T 2o1z_A 62 SRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 40256668899999999874599-------99999999999999999999966798689999999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHH
Q ss_conf 97878898788868999
Q gi|254781006|r 81 GLEPLFKYTENPFPWMS 97 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~ 97 (125)
|++++|++ +||+|||+
T Consensus 135 G~~~~y~~-~nP~~w~e 150 (151)
T 2o1z_A 135 GSPKIFHA-KNPFNWMD 150 (151)
T ss_dssp TCCCSSCC-CCCCTTTT
T ss_pred CCCCCCCC-CCCCCCCC
T ss_conf 99998999-99986515
>2oc5_A (A:) Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str}
Back Show alignment and structure
Probab=92.99 E-value=0.71 Score=25.76 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998
Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125)
|+||.+|+.||..-++.-. +.+++++.+.-++..-+-..-.+.+-.+ .++|+.++.+.+=.--.-...|..
T Consensus 155 VkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 226 (244)
T 2oc5_A 155 VKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRXLDQVAGDAAVLQXDKEDLIEDFLIAYQESLTE 226 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6436766015899999999--------99999999988850649999999999889997688999999999999999997
Q ss_pred CCCC
Q ss_conf 5978
Q gi|254781006|r 80 IGLE 83 (125)
Q Consensus 80 lGl~ 83 (125)
||+.
T Consensus 227 IGf~ 230 (244)
T 2oc5_A 227 IGFN 230 (244)
T ss_dssp HTCC
T ss_pred CCCC
T ss_conf 5975