254781067
elongation factor P
GeneID in NCBI database: | 8210090 | Locus tag: | CLIBASIA_04845 |
Protein GI in NCBI database: | 254781067 | Protein Accession: | YP_003065480.1 |
Gene range: | +(1070924, 1071493) | Protein Length: | 189aa |
Gene description: | elongation factor P | ||
COG prediction: | [J] Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) | ||
KEGG prediction: | efp; elongation factor P; K02356 elongation factor EF-P | ||
SEED prediction: | Translation elongation factor P | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Translation elongation factors bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | |||
315122588 | 189 | elongation factor P [Candidatus Liberibacter solanacear | 1 | 5e-97 | |
327191736 | 294 | elongation factor protein [Rhizobium etli CNPAF512] Len | 1 | 1e-79 | |
86359619 | 189 | elongation factor P [Rhizobium etli CFN 42] Length = 18 | 1 | 1e-79 | |
190893893 | 189 | elongation factor protein [Rhizobium etli CIAT 652] Len | 1 | 3e-79 | |
218674353 | 189 | elongation factor P [Rhizobium etli GR56] Length = 189 | 1 | 5e-78 | |
15889812 | 189 | elongation factor P [Agrobacterium tumefaciens str. C58 | 1 | 5e-78 | |
325293924 | 189 | elongation factor P [Agrobacterium sp. H13-3] Length = | 1 | 8e-78 | |
209551370 | 189 | elongation factor P [Rhizobium leguminosarum bv. trifol | 1 | 9e-78 | |
116254326 | 189 | elongation factor P [Rhizobium leguminosarum bv. viciae | 1 | 1e-77 | |
241206812 | 189 | elongation factor P [Rhizobium leguminosarum bv. trifol | 1 | 2e-77 |
>gi|315122588|ref|YP_004063077.1| elongation factor P [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 189 | Back alignment and organism information |
---|
Score = 357 bits (915), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 171/189 (90%), Positives = 182/189 (96%) Query: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60 MVKVIASAVRKGNVLDV+G+LY+VLVAKNF+PGKGTPITQVEMRRISDGVKVS RWRTTE Sbjct: 1 MVKVIASAVRKGNVLDVNGRLYVVLVAKNFYPGKGTPITQVEMRRISDGVKVSERWRTTE 60 Query: 61 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120 QVERAFVEDQRFQFLY D EG+HFMNPE YDQVTVS +V+GDQKVYFQEGMEVKLLIHEG Sbjct: 61 QVERAFVEDQRFQFLYADHEGYHFMNPENYDQVTVSIDVVGDQKVYFQEGMEVKLLIHEG 120 Query: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 VALSVEVPRHV+F V+DTEPS+KGQTVT SYKPAILSNDIRTTVPPHINIGD+IVILTED Sbjct: 121 VALSVEVPRHVIFKVVDTEPSAKGQTVTTSYKPAILSNDIRTTVPPHINIGDEIVILTED 180 Query: 181 NSYVERVKK 189 NSYVERVKK Sbjct: 181 NSYVERVKK 189 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|327191736|gb|EGE58738.1| elongation factor protein [Rhizobium etli CNPAF512] Length = 294 | Back alignment and organism information |
---|
>gi|86359619|ref|YP_471511.1| elongation factor P [Rhizobium etli CFN 42] Length = 189 | Back alignment and organism information |
---|
>gi|190893893|ref|YP_001980435.1| elongation factor protein [Rhizobium etli CIAT 652] Length = 189 | Back alignment and organism information |
---|
>gi|218674353|ref|ZP_03524022.1| elongation factor P [Rhizobium etli GR56] Length = 189 | Back alignment and organism information |
---|
>gi|15889812|ref|NP_355493.1| elongation factor P [Agrobacterium tumefaciens str. C58] Length = 189 | Back alignment and organism information |
---|
>gi|325293924|ref|YP_004279788.1| elongation factor P [Agrobacterium sp. H13-3] Length = 189 | Back alignment and organism information |
---|
>gi|209551370|ref|YP_002283287.1| elongation factor P [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 | Back alignment and organism information |
---|
>gi|116254326|ref|YP_770164.1| elongation factor P [Rhizobium leguminosarum bv. viciae 3841] Length = 189 | Back alignment and organism information |
---|
>gi|241206812|ref|YP_002977908.1| elongation factor P [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 189 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
PRK00529 | 186 | PRK00529, PRK00529, elongation factor P; Validated | 3e-66 | |
TIGR00038 | 184 | TIGR00038, efp, translation elongation factor P | 5e-58 | |
PRK04542 | 189 | PRK04542, PRK04542, elongation factor P; Provisional | 8e-24 | |
PRK12426 | 185 | PRK12426, PRK12426, elongation factor P; Provisional | 9e-22 | |
TIGR02178 | 186 | TIGR02178, yeiP, elongation factor P-like protein YeiP | 5e-21 | |
PRK14578 | 187 | PRK14578, PRK14578, elongation factor P; Provisional | 2e-20 | |
cd04470 | 61 | cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translatio | 2e-16 | |
pfam01132 | 55 | pfam01132, EFP, Elongation factor P (EF-P) OB domain | 9e-16 | |
pfam09285 | 56 | pfam09285, Elong-fact-P_C, Elongation factor P, C-termi | 7e-15 | |
smart00841 | 56 | smart00841, Elong-fact-P_C, Elongation factor P, C-term | 1e-14 | |
cd05794 | 56 | cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translatio | 1e-12 | |
pfam08207 | 58 | pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like d | 3e-10 | |
COG0231 | 131 | COG0231, Efp, Translation elongation factor P (EF-P)/tr | 8e-32 |
>gnl|CDD|179058 PRK00529, PRK00529, elongation factor P; Validated | Back alignment and domain information |
---|
>gnl|CDD|161673 TIGR00038, efp, translation elongation factor P | Back alignment and domain information |
---|
>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional | Back alignment and domain information |
---|
>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional | Back alignment and domain information |
---|
>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP | Back alignment and domain information |
---|
>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional | Back alignment and domain information |
---|
>gnl|CDD|88435 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 | Back alignment and domain information |
---|
>gnl|CDD|144650 pfam01132, EFP, Elongation factor P (EF-P) OB domain | Back alignment and domain information |
---|
>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal | Back alignment and domain information |
---|
>gnl|CDD|129074 smart00841, Elong-fact-P_C, Elongation factor P, C-terminal | Back alignment and domain information |
---|
>gnl|CDD|88469 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 | Back alignment and domain information |
---|
>gnl|CDD|149330 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like domain | Back alignment and domain information |
---|
>gnl|CDD|30580 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
TIGR00038 | 194 | efp translation elongation factor P; InterPro: IPR01176 | 100.0 | |
PRK00529 | 186 | elongation factor P; Validated | 100.0 | |
PRK12426 | 185 | elongation factor P; Provisional | 100.0 | |
PRK04542 | 189 | elongation factor P; Provisional | 100.0 | |
TIGR02178 | 187 | yeiP elongation factor P-like protein YeiP; InterPro: I | 100.0 | |
COG0231 | 131 | Efp Translation elongation factor P (EF-P)/translation | 100.0 | |
PRK03999 | 129 | translation initiation factor IF-5A; Provisional | 100.0 | |
TIGR00037 | 137 | eIF_5A translation initiation factor eIF-5A; InterPro: | 99.64 | |
PTZ00328 | 166 | eukaryotic initiation factor 5a; Provisional | 99.39 | |
KOG3271 | 156 | consensus | 99.19 | |
COG1499 | 355 | NMD3 NMD protein affecting ribosome stability and mRNA | 96.73 | |
pfam09285 | 56 | Elong-fact-P_C Elongation factor P, C-terminal. Members | 99.87 | |
smart00841 | 56 | Elong-fact-P_C Elongation factor P, C-terminal. These n | 99.87 | |
cd05794 | 56 | S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongati | 99.86 | |
cd04463 | 55 | S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding dom | 95.05 | |
cd04470 | 61 | S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongati | 99.8 | |
pfam01132 | 55 | EFP Elongation factor P (EF-P) OB domain. | 99.69 | |
cd04467 | 57 | S1_aIF5A S1_aIF5A: Archaeal translation Initiation Fact | 96.92 | |
cd04463 | 55 | S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding dom | 96.01 | |
pfam01287 | 69 | eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-bi | 92.57 | |
pfam08207 | 58 | EFP_N Elongation factor P (EF-P) KOW-like domain. | 99.72 |
>TIGR00038 efp translation elongation factor P; InterPro: IPR011768 Members of this family possess translation elongation factor activity | Back alignment and domain information |
---|
>PRK00529 elongation factor P; Validated | Back alignment and domain information |
---|
>PRK12426 elongation factor P; Provisional | Back alignment and domain information |
---|
>PRK04542 elongation factor P; Provisional | Back alignment and domain information |
---|
>TIGR02178 yeiP elongation factor P-like protein YeiP; InterPro: IPR011897 This entry represents homologs of elongation factor P (IPR011768 from INTERPRO) and probably are translation factors | Back alignment and domain information |
---|
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>PRK03999 translation initiation factor IF-5A; Provisional | Back alignment and domain information |
---|
>TIGR00037 eIF_5A translation initiation factor eIF-5A; InterPro: IPR001884 Translation initiation factor 5A (IF-5A) is reported to be involved in the first step of peptide bond formation in translation, to be involved in cell-cycle regulation and to be a cofactor for the Rev and Rex transactivator proteins of human immunodeficiency virus-1 and T-cell leukaemia virus I, respectively , , | Back alignment and domain information |
---|
>PTZ00328 eukaryotic initiation factor 5a; Provisional | Back alignment and domain information |
---|
>KOG3271 consensus | Back alignment and domain information |
---|
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>pfam09285 Elong-fact-P_C Elongation factor P, C-terminal | Back alignment and domain information |
---|
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal | Back alignment and domain information |
---|
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 | Back alignment and domain information |
---|
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain | Back alignment and domain information |
---|
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 | Back alignment and domain information |
---|
>pfam01132 EFP Elongation factor P (EF-P) OB domain | Back alignment and domain information |
---|
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain | Back alignment and domain information |
---|
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain | Back alignment and domain information |
---|
>pfam01287 eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | Back alignment and domain information |
---|
>pfam08207 EFP_N Elongation factor P (EF-P) KOW-like domain | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
3a5z_B | 191 | Crystal Structure Of Escherichia Coli Genx In Compl | 2e-58 | |
1yby_A | 215 | Conserved Hypothetical Protein Cth-95 From Clostrid | 3e-58 | |
1ueb_A | 184 | Crystal Structure Of Translation Elongation Factor | 1e-51 | |
3oyy_A | 191 | Structure Of Pseudomonas Aeruginosa Elongation Fact | 1e-42 | |
1bkb_A | 136 | Initiation Factor 5a From Archebacterium Pyrobaculu | 2e-07 | |
1eif_A | 135 | Eukaryotic Translation Initiation Factor 5a From Me | 4e-07 | |
2eif_A | 136 | Eukaryotic Translation Initiation Factor 5a From Me | 4e-07 | |
1iz6_A | 138 | Crystal Structure Of Translation Initiation Factor | 2e-06 | |
3hks_A | 167 | Crystal Structure Of Eukaryotic Translation Initiat | 9e-06 | |
1xtd_A | 174 | Structural Analysis Of Leishmania Mexicana Eukaryot | 3e-04 | |
1x6o_A | 174 | Structural Analysis Of Leishmania Braziliensis Euka | 4e-04 | |
3cpf_A | 138 | Crystal Structure Of Human Eukaryotic Translation I | 0.003 |
>gi|304445710|pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191 | Back alignment and structure |
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 97/188 (51%) Query: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60 M ++ R G + +DG+ Y V ++ PGKG +V++RR+ G +V +++T+ Sbjct: 4 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTD 63 Query: 61 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120 E A V D +LY D E +HFMN ET++Q++ + IGD + + E + + G Sbjct: 64 SAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNG 123 Query: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 +SV P V ++DT+P KG T KPA LS VP + IG+ I + T Sbjct: 124 QPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRS 183 Query: 181 NSYVERVK 188 YV RVK Sbjct: 184 GEYVSRVK 191 |
>gi|60594226|pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215 | Back alignment and structure |
gi|49259329|pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184 | Back alignment and structure |
>gi|325533964|pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P Length = 191 | Back alignment and structure |
>gi|157830360|pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136 | Back alignment and structure |
>gi|157830953|pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135 | Back alignment and structure |
>gi|6729830|pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136 | Back alignment and structure |
gi|28373376|pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138 | Back alignment and structure |
>gi|260099974|pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167 | Back alignment and structure |
>gi|56554724|pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174 | Back alignment and structure |
>gi|52696276|pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174 | Back alignment and structure |
>gi|183448388|pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
3a5z_B | 191 | EF-P, elongation factor P; aminoacyl-tRNA synthetase pa | 2e-51 | |
1yby_A | 215 | Translation elongation factor P; conserved hypothetical | 1e-41 | |
1ueb_A | 184 | EF-P, TT0860, elongation factor P; beta barrel, riken s | 2e-37 | |
1iz6_A | 138 | Initiation factor 5A; SH3-like barrel, OB fold, biosynt | 1e-21 | |
1bkb_A | 136 | Translation initiation factor 5A; 1.75A {Pyrobaculum ae | 4e-19 | |
3er0_A | 167 | Eukaryotic translation initiation factor 5A-2; yeast, l | 2e-18 | |
2eif_A | 136 | IF-5A, protein (eukaryotic translation initiation facto | 6e-18 | |
3hks_A | 167 | EIF-5A-2, eukaryotic translation initiation factor 5A-2 | 2e-16 | |
3cpf_A | 138 | Eukaryotic translation initiation factor 5A-1; structur | 1e-15 | |
1x6o_A | 174 | Eukaryotic initiation factor 5A; SGPP, structural genom | 1e-13 |
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191 | Back alignment and structure |
---|
Score = 196 bits (501), Expect = 2e-51 Identities = 63/188 (33%), Positives = 97/188 (51%) Query: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60 M ++ R G + +DG+ Y V ++ PGKG +V++RR+ G +V +++T+ Sbjct: 4 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTD 63 Query: 61 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120 E A V D +LY D E +HFMN ET++Q++ + IGD + + E + + G Sbjct: 64 SAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNG 123 Query: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 +SV P V ++DT+P KG T KPA LS VP + IG+ I + T Sbjct: 124 QPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRS 183 Query: 181 NSYVERVK 188 YV RVK Sbjct: 184 GEYVSRVK 191 |
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215 | Back alignment and structure |
---|
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184 | Back alignment and structure |
---|
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} SCOP: b.34.5.2 b.40.4.5 Length = 138 | Back alignment and structure |
---|
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136 | Back alignment and structure |
---|
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167 | Back alignment and structure |
---|
>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136 | Back alignment and structure |
---|
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167 | Back alignment and structure |
---|
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} Length = 138 | Back alignment and structure |
---|
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
1yby_A | 215 | Translation elongation factor P; conserved hypothetical | 100.0 | |
3a5z_B | 191 | EF-P, elongation factor P; aminoacyl-tRNA synthetase pa | 100.0 | |
1ueb_A | 184 | EF-P, TT0860, elongation factor P; beta barrel, riken s | 100.0 | |
1bkb_A | 136 | Translation initiation factor 5A; 1.75A {Pyrobaculum ae | 100.0 | |
1iz6_A | 138 | Initiation factor 5A; SH3-like barrel, OB fold, biosynt | 100.0 | |
2eif_A | 136 | IF-5A, protein (eukaryotic translation initiation facto | 100.0 | |
3er0_A | 167 | Eukaryotic translation initiation factor 5A-2; yeast, l | 100.0 | |
3cpf_A | 138 | Eukaryotic translation initiation factor 5A-1; structur | 100.0 | |
3hks_A | 167 | EIF-5A-2, eukaryotic translation initiation factor 5A-2 | 99.98 | |
1x6o_A | 174 | Eukaryotic initiation factor 5A; SGPP, structural genom | 99.97 | |
1khi_A | 176 | HEX1; membrane sealing, peroxisomal target, structural | 99.31 |
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=484.88 Aligned_cols=186 Identities=32% Similarity=0.604 Sum_probs=184.7 Q ss_pred CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 23664321677589988937999998753688876389999998246871001342787200101056405789961988 Q gi|254781067|r 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) ||++|||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+. T Consensus 30 ~mi~a~dlkkG~~I~~dg~py~Vl~~~~~kpGkg~A~vr~KlKnL~tG~~~e~tf~s~ekve~a~le~~~~qyLY~Dg~~ 109 (215) T 1yby_A 30 LMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDL 109 (215) T ss_dssp -CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTE T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEEEEEEEEECCCC T ss_conf 34487876687899999999999998862499995289999998168983478974776110111343789999968998 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCE Q ss_conf 99994688764321154300133201378615689766777440158749999998285421310247700089937959 Q gi|254781067|r 82 FHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIR 161 (189) Q Consensus 82 ~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~ 161 (189) |+|||++||||++++++++|++.+||+||++|++++|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||++ T Consensus 110 ~~FMd~etyEQi~v~~d~ig~~~~~L~e~~~v~v~~~~~~~i~v~lP~~V~l~V~et~p~vKGdTas~~~K~A~LeTG~~ 189 (215) T 1yby_A 110 YYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGAS 189 (215) T ss_dssp EEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCE T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCE T ss_conf 89873877543233366641466521468507999926842100148739999998999655654678877489818999 Q ss_pred EECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 98474016887999988997240210 Q gi|254781067|r 162 TTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 162 i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) |+||+||++||+|+|||++|+|++|+ T Consensus 190 v~VP~FI~~Gd~IkV~T~~g~Y~~RV 215 (215) T 1yby_A 190 IKVPLFVNKGDIIRIDTRTGEYMERV 215 (215) T ss_dssp EEEETTCCTTCEEEEETTTTEEEEEC T ss_pred EEECCCCCCCCEEEEECCCCEEEECC T ss_conf 98488327999999989987067059 |
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} | Back alignment and structure |
---|
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V | Back alignment and structure |
---|
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 | Back alignment and structure |
---|
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} SCOP: b.34.5.2 b.40.4.5 | Back alignment and structure |
---|
>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A | Back alignment and structure |
---|
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} | Back alignment and structure |
---|
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} | Back alignment and structure |
---|
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} | Back alignment and structure |
---|
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A | Back alignment and structure |
---|
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
189 | elongation factor P [Candidatus Liberibacter asiaticus | |||
d1ueba2 | 63 | b.40.4.5 (A:64-126) Elongation factor P middle and C-te | 2e-16 | |
d1ueba3 | 58 | b.40.4.5 (A:127-184) Elongation factor P middle and C-t | 6e-15 | |
d1ueba1 | 63 | b.34.5.2 (A:1-63) Elongation factor P N-terminal domain | 2e-10 | |
d1iz6a1 | 69 | b.34.5.2 (A:2-70) Eukaryotic initiation translation fac | 6e-08 | |
d1bkba1 | 71 | b.34.5.2 (A:4-74) Eukaryotic initiation translation fac | 3e-06 | |
d2eifa1 | 73 | b.34.5.2 (A:1-73) Eukaryotic initiation translation fac | 2e-05 |
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 | Back information, alignment and structure |
---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Elongation factor P middle and C-terminal domains species: Thermus thermophilus HB8 [TaxId: 300852] Score = 78.9 bits (195), Expect = 2e-16 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSV 125 +VE + Q+LY + E FM+ ETY+Q V + + +F+EGM ++EG + V Sbjct: 1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKV 59 Query: 126 EVP 128 P Sbjct: 60 TPP 62 |
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58 | Back information, alignment and structure |
---|
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 | Back information, alignment and structure |
---|
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 | Back information, alignment and structure |
---|
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 | Back information, alignment and structure |
---|
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
d1ueba3 | 58 | Elongation factor P middle and C-terminal domains {Ther | 99.88 | |
d1ueba2 | 63 | Elongation factor P middle and C-terminal domains {Ther | 99.81 | |
d1bkba2 | 65 | C-terminal domain of eukaryotic initiation translation | 97.19 | |
d1iz6a2 | 67 | C-terminal domain of eukaryotic initiation translation | 97.06 | |
d2eifa2 | 59 | C-terminal domain of eukaryotic initiation translation | 96.94 | |
d1ueba1 | 63 | Elongation factor P N-terminal domain {Thermus thermoph | 99.8 | |
d1bkba1 | 71 | Eukaryotic initiation translation factor 5a (eIF5a) {Ar | 99.75 | |
d1iz6a1 | 69 | Eukaryotic initiation translation factor 5a (eIF5a) {Ar | 99.74 | |
d2eifa1 | 73 | Eukaryotic initiation translation factor 5a (eIF5a) {Ar | 99.71 | |
d1x6oa1 | 68 | Eukaryotic initiation translation factor 5a (eIF5a) {Le | 98.92 | |
d1khia1 | 76 | Woronin body major protein (Hex1) {Filamentous fungi (N | 97.96 |
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} | Back information, alignment and structure |
---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Elongation factor P middle and C-terminal domains species: Thermus thermophilus HB8 [TaxId: 300852] Probab=99.88 E-value=1.5e-23 Score=162.35 Aligned_cols=57 Identities=35% Similarity=0.536 Sum_probs=56.3 Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 999999828542131024770008993795998474016887999988997240210 Q gi|254781067|r 131 VVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 131 v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|| T Consensus 2 V~l~V~etep~vKG~Ta~~~~K~a~letG~~i~VP~FI~~Gd~I~VdT~~g~Y~~RA 58 (58) T d1ueba3 2 VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 58 (58) T ss_dssp EEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC T ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCEEEEECCCCEEECCC T ss_conf 899999899975555456885628982899998388445999999989997674049 |
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} | Back information, alignment and structure |
---|
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
---|
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
---|
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
---|
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} | Back information, alignment and structure |
---|
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
---|
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
---|
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
---|
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} | Back information, alignment and structure |
---|
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 189 | elongation factor P [Candidatus Liberibacter asiat | ||
1ueb_A_64-125 | 62 | (A:64-125) EF-P, TT0860, elongation factor P; beta | 8e-18 | |
1yby_A_94-156 | 63 | (A:94-156) Translation elongation factor P; conser | 1e-16 | |
1yby_A_157-215 | 59 | (A:157-215) Translation elongation factor P; conse | 6e-15 | |
1ueb_A_126-184 | 59 | (A:126-184) EF-P, TT0860, elongation factor P; bet | 8e-15 | |
1yby_A_1-93 | 93 | (A:1-93) Translation elongation factor P; conserve | 4e-14 | |
1ueb_A_1-63 | 63 | (A:1-63) EF-P, TT0860, elongation factor P; beta b | 5e-11 |
>1ueb_A (A:64-125) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus}Length = 62 | Back alignment and structure |
---|
Score = 84.7 bits (210), Expect = 8e-18 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSV 125 +VE + Q+LY + E FM+ ETY+Q V + + +F+EGM ++EG + V Sbjct: 1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKV 59 Query: 126 EVP 128 P Sbjct: 60 TPP 62 |
>1yby_A (A:94-156) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}Length = 63 | Back alignment and structure |
---|
>1yby_A (A:157-215) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}Length = 59 | Back alignment and structure |
---|
>1ueb_A (A:126-184) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus}Length = 59 | Back alignment and structure |
---|
>1yby_A (A:1-93) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}Length = 93 | Back alignment and structure |
---|
>1ueb_A (A:1-63) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus}Length = 63 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 189 | elongation factor P [Candidatus Liberibacter asiaticus | ||
1ueb_A_126-184 | 59 | EF-P, TT0860, elongation factor P; beta barrel, ri | 99.89 | |
1yby_A_157-215 | 59 | Translation elongation factor P; conserved hypothe | 99.87 | |
1yby_A_1-93 | 93 | Translation elongation factor P; conserved hypothe | 99.84 | |
1ueb_A_1-63 | 63 | EF-P, TT0860, elongation factor P; beta barrel, ri | 99.8 | |
1iz6_A_1-70 | 70 | Initiation factor 5A; SH3-like barrel, OB fold, bi | 98.86 | |
2eif_A_1-74 | 74 | IF-5A, protein (eukaryotic translation initiation | 98.83 | |
1bkb_A_1-71 | 71 | Translation initiation factor 5A; 1.75A {Pyrobacul | 98.83 | |
3cpf_A_1-70 | 70 | Eukaryotic translation initiation factor 5A-1; str | 98.83 | |
3hks_A_1-92 | 92 | EIF-5A-2, eukaryotic translation initiation factor | 98.81 | |
3er0_A_1-94 | 94 | Eukaryotic translation initiation factor 5A-2; yea | 98.8 | |
1x6o_A_1-94 | 94 | Eukaryotic initiation factor 5A; SGPP, structural | 98.78 | |
1khi_A_1-101 | 101 | HEX1; membrane sealing, peroxisomal target, struct | 98.31 | |
1yby_A_94-156 | 63 | Translation elongation factor P; conserved hypothe | 99.83 | |
1ueb_A_64-125 | 62 | EF-P, TT0860, elongation factor P; beta barrel, ri | 99.79 | |
1bkb_A_72-136 | 65 | Translation initiation factor 5A; 1.75A {Pyrobacul | 97.32 | |
1iz6_A_71-138 | 68 | Initiation factor 5A; SH3-like barrel, OB fold, bi | 97.13 | |
2eif_A_75-136 | 62 | IF-5A, protein (eukaryotic translation initiation | 96.79 |
>1ueb_A (A:126-184) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} | Back alignment and structure |
---|
Probab=99.89 E-value=1.7e-23 Score=164.26 Aligned_cols=59 Identities=34% Similarity=0.505 Sum_probs=58.0 Q ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 74999999828542131024770008993795998474016887999988997240210 Q gi|254781067|r 129 RHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 129 ~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) ++|+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|| T Consensus 1 ~~V~l~V~etep~~KGdta~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~RA 59 (59) T 1ueb_A 1 TVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 59 (59) T ss_dssp SEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC T ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEECCCCEEECCC T ss_conf 67999999847610355467886629980899998488427999999989987362249 |
>1yby_A (A:157-215) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} | Back alignment and structure |
---|
>1yby_A (A:1-93) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} | Back alignment and structure |
---|
>1ueb_A (A:1-63) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} | Back alignment and structure |
---|
>1iz6_A (A:1-70) Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} | Back alignment and structure |
---|
>2eif_A (A:1-74) IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
---|
>1bkb_A (A:1-71) Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} | Back alignment and structure |
---|
>3cpf_A (A:1-70) Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} | Back alignment and structure |
---|
>3hks_A (A:1-92) EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} | Back alignment and structure |
---|
>3er0_A (A:1-94) Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} | Back alignment and structure |
---|
>1x6o_A (A:1-94) Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} | Back alignment and structure |
---|
>1khi_A (A:1-101) HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} | Back alignment and structure |
---|
>1yby_A (A:94-156) Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} | Back alignment and structure |
---|
>1ueb_A (A:64-125) EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} | Back alignment and structure |
---|
>1bkb_A (A:72-136) Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} | Back alignment and structure |
---|
>1iz6_A (A:71-138) Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} | Back alignment and structure |
---|
>2eif_A (A:75-136) IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
---|