254781069
hypothetical protein CLIBASIA_04855
| GeneID in NCBI database: | 8210092 | Locus tag: | CLIBASIA_04855 |
| Protein GI in NCBI database: | 254781069 | Protein Accession: | YP_003065482.1 |
| Gene range: | +(1072432, 1072563) | Protein Length: | 43aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
No hits with e-value below 0.005 within the first 2 iteration
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 43 | hypothetical protein CLIBASIA_04855 [Candidatus Liberib | ||
| PRK05337 | 336 | beta-hexosaminidase; Provisional | 94.8 |
| >PRK05337 beta-hexosaminidase; Provisional | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 43 | hypothetical protein CLIBASIA_04855 [Candidatus Liberib | ||
| 2oxn_A | 340 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1 | 92.73 |
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.024 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=18.5
Q ss_pred CCCCEEEEEEECCCEEEEEEE
Q ss_conf 268669999607862323333
Q gi|254781069|r 15 SSYPLMIAIDYEGGEVSRLIC 35 (43)
Q Consensus 15 ssyplmiaidyeggevsrlic 35 (43)
+..||+|+||-|||.|+|+.-
T Consensus 53 ~~~pllIaiDqEGG~v~rl~~ 73 (340)
T 2oxn_A 53 AKRPILIGVDQEGGRVQRFRE 73 (340)
T ss_dssp HSSCCEEEECEEETTEESCCT
T ss_pred CCCCCEEEECCCCCEEEECCC
T ss_conf 199958998158972442268
|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 43 | hypothetical protein CLIBASIA_04855 [Candidatus Liberib | ||
| d1tr9a_ | 330 | Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} | 91.98 |
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-hexosaminidase NagZ species: Vibrio cholerae [TaxId: 666]
Probab=91.98 E-value=0.02 Score=30.62 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=18.6
Q ss_pred CCCCEEEEEEECCCEEEEEEE
Q ss_conf 268669999607862323333
Q gi|254781069|r 15 SSYPLMIAIDYEGGEVSRLIC 35 (43)
Q Consensus 15 ssyplmiaidyeggevsrlic 35 (43)
+..||+|+||.|||.|+|+-.
T Consensus 54 ~~~plliaiDqEgG~v~r~~~ 74 (330)
T d1tr9a_ 54 AKRPILIGVDQEGGRVQRFRE 74 (330)
T ss_dssp HCSCCEEEECEEETTEESCCT
T ss_pred CCCCEEEEECCCCCCCCCCCC
T ss_conf 499908998754234552102
|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00