254781095
UDP-N-acetylenolpyruvoylglucosamine reductase
GeneID in NCBI database: | 8210120 | Locus tag: | CLIBASIA_04985 |
Protein GI in NCBI database: | 254781095 | Protein Accession: | YP_003065508.1 |
Gene range: | -(1092920, 1093876) | Protein Length: | 318aa |
Gene description: | UDP-N-acetylenolpyruvoylglucosamine reductase | ||
COG prediction: | [M] UDP-N-acetylmuramate dehydrogenase | ||
KEGG prediction: | murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] | ||
SEED prediction: | UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) | ||
Pathway involved in KEGG: | Amino sugar and nucleotide sugar metabolism [PATH:las00520]
Peptidoglycan biosynthesis [PATH:las00550] | ||
Subsystem involved in SEED: | UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
Peptidoglycan Biosynthesis | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | |||
315122421 | 316 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | 1 | 1e-143 | |
190892581 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobiu | 1 | 1e-102 | |
209550172 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobiu | 1 | 1e-102 | |
86358448 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobiu | 1 | 1e-101 | |
325293463 | 321 | UDP-N-acetylenolpyruvoylglucosamine reductase [Agrobact | 1 | 1e-100 | |
15889376 | 321 | UDP-N-acetylenolpyruvoylglucosamine reductase [Agrobact | 1 | 3e-99 | |
227822649 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase [Sinorhiz | 1 | 1e-96 | |
163760788 | 325 | UDP-N-acetylenolpyruvoylglucosamine reductase [Hoeflea | 1 | 5e-96 | |
116253046 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobiu | 1 | 7e-96 | |
222086442 | 324 | UDP-N-acetylenolpyruvoylglucosamine reductase protein [ | 1 | 9e-96 |
>gi|315122421|ref|YP_004062910.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 316 | Back alignment and organism information |
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Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 238/309 (77%), Positives = 273/309 (88%) Query: 10 LRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGL 69 R+R +QLRGKFQENFP+KQ+TWFRTGGNAE MFQP+DIHDLKYFLTLLP+DI ITIVGL Sbjct: 8 FRKRVQQLRGKFQENFPMKQVTWFRTGGNAEFMFQPKDIHDLKYFLTLLPNDITITIVGL 67 Query: 70 GSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFF 129 GSNILVRDAGI+GVVLRLS++GFS IE+++ CE++VGA CSGK LAN A+ HGIGG HFF Sbjct: 68 GSNILVRDAGIKGVVLRLSHSGFSQIEMKSDCEIVVGASCSGKFLANWAMHHGIGGLHFF 127 Query: 130 YGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLI 189 YGIPGSIGGA YMNAGANNCETSQ VVEVH +DR GNQH+IP+ ++ YQYR S + KD I Sbjct: 128 YGIPGSIGGAVYMNAGANNCETSQCVVEVHAMDRMGNQHIIPQNKMGYQYRHSLLPKDYI 187 Query: 190 ITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCR 249 ITHV L+GFPESQ++I +AI+ V HR+TVQPIKEKTGGSTFKNP GHSAW+LIE+S CR Sbjct: 188 ITHVFLKGFPESQDVIRSAISTVSVHRQTVQPIKEKTGGSTFKNPMGHSAWKLIEESQCR 247 Query: 250 GLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDFFDH 309 GLEFGGAKISELHCNFMIN NATGYDLEYLGE VRKKV ++GI+LEWEIKRLG+F DH Sbjct: 248 GLEFGGAKISELHCNFMINTGNATGYDLEYLGELVRKKVLKKTGIVLEWEIKRLGEFVDH 307 Query: 310 QIVDATKIF 318 +I+D T IF Sbjct: 308 RIIDDTTIF 316 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190892581|ref|YP_001979123.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobium etli CIAT 652] Length = 324 | Back alignment and organism information |
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>gi|209550172|ref|YP_002282089.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 | Back alignment and organism information |
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>gi|86358448|ref|YP_470340.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobium etli CFN 42] Length = 324 | Back alignment and organism information |
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>gi|325293463|ref|YP_004279327.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Agrobacterium sp. H13-3] Length = 321 | Back alignment and organism information |
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>gi|15889376|ref|NP_355057.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Agrobacterium tumefaciens str. C58] Length = 321 | Back alignment and organism information |
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>gi|227822649|ref|YP_002826621.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Sinorhizobium fredii NGR234] Length = 324 | Back alignment and organism information |
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>gi|163760788|ref|ZP_02167868.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Hoeflea phototrophica DFL-43] Length = 325 | Back alignment and organism information |
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>gi|116253046|ref|YP_768884.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Rhizobium leguminosarum bv. viciae 3841] Length = 324 | Back alignment and organism information |
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>gi|222086442|ref|YP_002544976.1| UDP-N-acetylenolpyruvoylglucosamine reductase protein [Agrobacterium radiobacter K84] Length = 324 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
PRK13905 | 298 | PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine red | 1e-113 | |
PRK14652 | 302 | PRK14652, PRK14652, UDP-N-acetylenolpyruvoylglucosamine | 8e-46 | |
TIGR00179 | 284 | TIGR00179, murB, UDP-N-acetylenolpyruvoylglucosamine re | 4e-45 | |
PRK13906 | 307 | PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine red | 4e-43 | |
PRK14653 | 297 | PRK14653, PRK14653, UDP-N-acetylenolpyruvoylglucosamine | 7e-39 | |
PRK12436 | 305 | PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine | 3e-35 | |
PRK14649 | 295 | PRK14649, PRK14649, UDP-N-acetylenolpyruvoylglucosamine | 5e-33 | |
PRK14651 | 273 | PRK14651, PRK14651, UDP-N-acetylenolpyruvoylglucosamine | 5e-32 | |
PRK14650 | 302 | PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine | 5e-27 | |
PRK14648 | 354 | PRK14648, PRK14648, UDP-N-acetylenolpyruvoylglucosamine | 6e-21 | |
PRK00046 | 334 | PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine red | 6e-14 | |
COG0812 | 291 | COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell | 1e-84 | |
PRK13904 | 257 | PRK13904, murB, UDP-N-acetylenolpyruvoylglucosamine red | 4e-30 | |
pfam02873 | 103 | pfam02873, MurB_C, UDP-N-acetylenolpyruvoylglucosamine | 2e-27 | |
PRK13903 | 363 | PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine red | 7e-15 | |
pfam01565 | 138 | pfam01565, FAD_binding_4, FAD binding domain | 8e-09 |
>gnl|CDD|184385 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|173115 PRK14652, PRK14652, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|161747 TIGR00179, murB, UDP-N-acetylenolpyruvoylglucosamine reductase | Back alignment and domain information |
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>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|173116 PRK14653, PRK14653, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|171497 PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|173112 PRK14649, PRK14649, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|184781 PRK14651, PRK14651, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|173111 PRK14648, PRK14648, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|178820 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|31154 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|184384 PRK13904, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|111727 pfam02873, MurB_C, UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain | Back alignment and domain information |
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>gnl|CDD|184383 PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
PRK13905 | 298 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Pro | 100.0 | |
PRK13906 | 307 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Pro | 100.0 | |
PRK12436 | 305 | UDP-N-acetylenolpyruvoylglucosamine reductase; Provisio | 100.0 | |
COG0812 | 291 | MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope | 100.0 | |
PRK00046 | 348 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Pro | 100.0 | |
PRK13903 | 359 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Pro | 100.0 | |
PRK13904 | 257 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Pro | 100.0 | |
TIGR00179 | 327 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Int | 100.0 | |
pfam02873 | 103 | MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C | 100.0 | |
PRK11230 | 499 | glycolate oxidase subunit GlcD; Provisional | 99.68 | |
KOG1232 | 511 | consensus | 98.72 | |
TIGR02963 | 515 | xanthine_xdhA xanthine dehydrogenase, small subunit; In | 97.72 | |
TIGR01676 | 541 | GLDHase galactonolactone dehydrogenase; InterPro: IPR01 | 96.45 | |
COG4630 | 493 | XdhA Xanthine dehydrogenase, iron-sulfur cluster and FA | 90.31 | |
pfam01565 | 138 | FAD_binding_4 FAD binding domain. This family consists | 99.68 | |
pfam00941 | 171 | FAD_binding_5 FAD binding domain in molybdopterin dehyd | 97.71 | |
PRK09971 | 292 | xanthine dehydrogenase subunit XdhB; Provisional | 97.37 | |
TIGR03195 | 321 | 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subuni | 97.12 | |
TIGR03312 | 257 | Se_sel_red_FAD probable selenate reductase, FAD-binding | 95.43 | |
PRK09799 | 258 | putative selenate reductase subunit YgfM; Provisional | 94.35 | |
TIGR03199 | 264 | pucC xanthine dehydrogenase C subunit. This gene has be | 94.21 | |
COG0277 | 459 | GlcD FAD/FMN-containing dehydrogenases [Energy producti | 99.56 | |
PRK11282 | 351 | glcE glycolate oxidase FAD binding subunit; Provisional | 99.5 | |
TIGR00387 | 437 | glcD glycolate oxidase, subunit GlcD; InterPro: IPR0044 | 99.32 | |
TIGR01678 | 505 | FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IP | 99.21 | |
KOG1231 | 505 | consensus | 99.05 | |
KOG4730 | 518 | consensus | 99.01 | |
TIGR01679 | 426 | bact_FAD_ox FAD-linked oxidoreductase; InterPro: IPR010 | 98.64 | |
TIGR01677 | 577 | pln_FAD_oxido plant-specific FAD-dependent oxidoreducta | 98.56 | |
KOG1233 | 613 | consensus | 98.47 | |
KOG0430 | 1257 | consensus | 96.61 | |
COG1319 | 284 | CoxM Aerobic-type carbon monoxide dehydrogenase, middle | 95.9 | |
PRK11183 | 565 | D-lactate dehydrogenase; Provisional | 92.46 |
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional | Back alignment and domain information |
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>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro: IPR003170 Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes, which are also called UDP-N-acetylmuramate dehydrogenases | Back alignment and domain information |
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>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain | Back alignment and domain information |
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>PRK11230 glycolate oxidase subunit GlcD; Provisional | Back alignment and domain information |
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>KOG1232 consensus | Back alignment and domain information |
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>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate | Back alignment and domain information |
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>TIGR01676 GLDHase galactonolactone dehydrogenase; InterPro: IPR010029 This entry identifies L-galactono-gamma-lactone dehydrogenase 1 | Back alignment and domain information |
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>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] | Back alignment and domain information |
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>pfam01565 FAD_binding_4 FAD binding domain | Back alignment and domain information |
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>pfam00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase | Back alignment and domain information |
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>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional | Back alignment and domain information |
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>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit | Back alignment and domain information |
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>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit | Back alignment and domain information |
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>PRK09799 putative selenate reductase subunit YgfM; Provisional | Back alignment and domain information |
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>TIGR03199 pucC xanthine dehydrogenase C subunit | Back alignment and domain information |
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>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] | Back alignment and domain information |
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>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional | Back alignment and domain information |
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>TIGR00387 glcD glycolate oxidase, subunit GlcD; InterPro: IPR004490 The glc locus of Escherichia coli encodes the subunits of glycolate oxidase and the glc regulator protein | Back alignment and domain information |
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>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative | Back alignment and domain information |
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>KOG1231 consensus | Back alignment and domain information |
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>KOG4730 consensus | Back alignment and domain information |
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>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase; InterPro: IPR010032 This entry identifies a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (1 | Back alignment and domain information |
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>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase; InterPro: IPR010030 This entry identifies a family of uncharacterised plant-specific FAD-dependent oxidoreductases | Back alignment and domain information |
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>KOG1233 consensus | Back alignment and domain information |
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>KOG0430 consensus | Back alignment and domain information |
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>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] | Back alignment and domain information |
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>PRK11183 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
1hsk_A | 326 | Crystal Structure Of S. Aureus Murb Length = 326 | 4e-53 | |
3i99_A | 357 | The Crystal Structure Of The Udp-N- Acetylenolpyruv | 4e-39 | |
2q85_A | 342 | Crystal Structure Of E. Coli Mur B Bound To A Napht | 1e-38 | |
2mbr_A | 340 | Murb Wild Type, Complex With Enolpyruvyl-Udp-N- Ace | 7e-38 | |
1uxy_A | 340 | Murb Mutant With Ser 229 Replaced By Ala, Complex W | 1e-37 | |
2gqt_A | 268 | Crystal Structure Of Udp-N-Acetylenolpyruvylglucosa | 2e-30 |
>gi|13787122|pdb|1HSK|A Chain A, Crystal Structure Of S. Aureus Murb Length = 326 | Back alignment and structure |
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 7/312 (2%) Query: 2 IYGRISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PS 60 I I + L++ K + + PLK+ T+ +TGGNA+ P +++ + + Sbjct: 14 INKDIYQALQQLIPN--EKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQN 71 Query: 61 DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALR 120 +IP+T +G GSNI++R+ GIRG+V+ L + + +I G+ + ++ A Sbjct: 72 EIPVTYLGNGSNIIIREGGIRGIVISLLSLDHIEVSDDA---IIAGSGAAIIDVSRVARD 128 Query: 121 HGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYR 180 + + G F GIPGSIGGA YMNAGA E + ++ +G+ + ++L+ YR Sbjct: 129 YALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYR 188 Query: 181 SSEITKDL-IITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSA 239 +S I K+ ++ P I A + ++ RE+ QP++ + GS F+ P GH A Sbjct: 189 NSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFA 248 Query: 240 WQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWE 299 +LI+ S +G GG ++S H FM+N DN T D E L V+K V + GI L E Sbjct: 249 GKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNRE 308 Query: 300 IKRLGDFFDHQI 311 ++ +G+ + Sbjct: 309 VRIIGEHPKESL 320 |
>gi|261824992|pdb|3I99|A Chain A, The Crystal Structure Of The Udp-N- Acetylenolpyruvoylglucosamine Reductase From The Vibrio Cholerae O1 Biovar Tor Length = 357 | Back alignment and structure |
gi|151567952|pdb|2Q85|A Chain A, Crystal Structure Of E. Coli Mur B Bound To A Naphthyl Tetronic Acid Inihibitor Length = 342 | Back alignment and structure |
>gi|157835335|pdb|2MBR|A Chain A, Murb Wild Type, Complex With Enolpyruvyl-Udp-N- Acetylglucosamine Length = 340 | Back alignment and structure |
>gi|157834106|pdb|1UXY|A Chain A, Murb Mutant With Ser 229 Replaced By Ala, Complex With Enolpyruvyl-Udp-N-Acetylglucosamine Length = 340 | Back alignment and structure |
>gi|122920334|pdb|2GQT|A Chain A, Crystal Structure Of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus Length = 268 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
1hsk_A | 326 | UDP-N-acetylenolpyruvoylglucosamine reductase; peptidog | 2e-68 | |
3i99_A | 357 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxidored | 4e-50 | |
2gqt_A | 268 | UDP-N-acetylenolpyruvylglucosamine reductase; peptidogl | 1e-47 | |
1uxy_A | 340 | MURB, uridine diphospho-N-acetylenolpyruvylglucosamine | 5e-45 |
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 | Back alignment and structure |
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Score = 254 bits (649), Expect = 2e-68 Identities = 99/303 (32%), Positives = 164/303 (54%), Gaps = 7/303 (2%) Query: 6 ISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPI 64 I + L++ K + + PLK+ T+ +TGGNA+ P +++ + ++IP+ Sbjct: 18 IYQALQQLIP--NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPV 75 Query: 65 TIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIG 124 T +G GSNI++R+ GIRG+V+ L + +IEV + +I G+ + ++ A + + Sbjct: 76 TYLGNGSNIIIREGGIRGIVISLLS--LDHIEVSDDA-IIAGSGAAIIDVSRVARDYALT 132 Query: 125 GFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEI 184 G F GIPGSIGGA YMNAGA E + ++ +G+ + ++L+ YR+S I Sbjct: 133 GLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSII 192 Query: 185 TKD-LIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLI 243 K+ L++ P I A + ++ RE+ QP++ + GS F+ P GH A +LI Sbjct: 193 QKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLI 252 Query: 244 EKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRL 303 + S +G GG ++S H FM+N DN T D E L V+K V + GI L E++ + Sbjct: 253 QDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRII 312 Query: 304 GDF 306 G+ Sbjct: 313 GEH 315 |
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Length = 357 | Back alignment and structure |
---|
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Length = 268 | Back alignment and structure |
---|
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Length = 340 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
1hsk_A | 326 | UDP-N-acetylenolpyruvoylglucosamine reductase; peptidog | 100.0 | |
3i99_A | 357 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxidored | 100.0 | |
1uxy_A | 340 | MURB, uridine diphospho-N-acetylenolpyruvylglucosamine | 100.0 | |
2gqt_A | 268 | UDP-N-acetylenolpyruvylglucosamine reductase; peptidogl | 100.0 | |
2uuu_A | 584 | Alkyldihydroxyacetonephosphate synthase; rhizomelic cho | 99.65 | |
1e8g_A | 560 | Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, | 99.51 | |
2exr_A | 524 | Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxida | 99.5 | |
2bvf_A | 459 | 6-hydroxy-D-nicotine oxidase; autoflavinylation, enanti | 99.49 | |
2ipi_A | 521 | Aclacinomycin oxidoreductase (aknox); anthracycline, fl | 99.49 | |
1w1o_A | 534 | Cytokinin dehydrogenase 1; flavin, oxidoreductase, flav | 99.48 | |
3fw9_A | 495 | Reticuline oxidase; BI-covalent flavinylation, N-glycos | 99.48 | |
2i0k_A | 561 | Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzy | 99.45 | |
3js8_A | 540 | Cholesterol oxidase; cholsterol, organic solvent stabil | 99.44 | |
1zr6_A | 503 | Glucooligosaccharide oxidase; alpha + beta, flavoenzyme | 99.42 | |
2wdx_A | 523 | Putative hexose oxidase; oxidoreductase-antibiotic comp | 99.41 | |
2vfr_A | 422 | Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, f | 99.41 | |
1rm6_B | 324 | 4-hydroxybenzoyl-COA reductase beta subunit; xanthine o | 98.06 | |
3nrz_B | 305 | Xanthine dehydrogenase/oxidase; xanthine oxidase, hypox | 97.98 | |
1ffv_C | 287 | CUTM, flavoprotein of carbon monoxide dehydrogenase; hy | 97.96 | |
2w3s_A | 462 | Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, ir | 97.85 | |
3hrd_C | 296 | Nicotinate dehydrogenase FAD-subunit; selenium ligand, | 97.72 | |
1v97_A | 1332 | XD, xanthine dehydrogenase; molybdopterin, FYX-051, rea | 97.68 | |
1n62_C | 288 | Carbon monoxide dehydrogenase medium chain; CODH, coppe | 97.62 | |
1t3q_C | 288 | Quinoline 2-oxidoreductase medium subunit; QOR, molybde | 97.6 | |
1wvf_A | 520 | 4-cresol dehydrogenase [hydroxylating] flavoprotein sub | 99.58 | |
1f0x_A | 571 | DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD | 99.46 | |
2yvs_A | 219 | Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A { | 98.09 |
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=669.97 Aligned_cols=304 Identities=33% Similarity=0.535 Sum_probs=281.3 Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEEC Q ss_conf 79999999998750662775488001522576614889999689899999999856-29989998475203660488402 Q gi|254781095|r 4 GRISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRG 82 (318) Q Consensus 4 ~~~~~~l~~~~~~~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G 82 (318) +.+.+.|+..+. +.+|+.|+||++||||||||+|++|++|+|.+||.+++++++ +++|+++||+|||+||+|++|+| T Consensus 16 ~~~~~~l~~~~~--~~~i~~n~pLs~~tT~riGG~A~~~~~~~s~~dL~~~l~~~~~~~~p~~vLG~GSNlL~~D~g~~G 93 (326) T 1hsk_A 16 KDIYQALQQLIP--NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRG 93 (326) T ss_dssp HHHHHHHHHHSC--GGGEEEEEEGGGTCTTSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTTCEEE T ss_pred HHHHHHHHHHCC--CCCEEECCCCCCCCEEEECCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCC T ss_conf 999999996576--574881786766637335808889997599999999999998749988999076415773589874 Q ss_pred CHHHHCCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC Q ss_conf 20221123443113302665123311221567777887520120003872566324311573215831345666434411 Q gi|254781095|r 83 VVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162 (318) Q Consensus 83 ~vI~l~~~~~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d 162 (318) +||++.. +..++..+ ..++|+||+.|++|++++.++||+|||||+|||||||||++|||||||.|++|+|++|+++| T Consensus 94 vVI~l~~--~~~~~~~~-~~v~~~aG~~~~~lv~~~~~~gl~GlE~L~gIPGTVGgAv~mNaGayG~ei~d~l~~V~~~d 170 (326) T 1hsk_A 94 IVISLLS--LDHIEVSD-DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVN 170 (326) T ss_dssp EEEECTT--CCCEEEET-TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCSBHHHHHHHTCEETTEEHHHHEEEEEEEC T ss_pred EEEEECC--CCCEEECC-CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEEEEEE T ss_conf 4998514--68388326-33899718797999999997587683135556750467775147888507041788889983 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCHH Q ss_conf 232100001233443100232246-7620010023545654310012221001100015566704658897278985100 Q gi|254781095|r 163 RKGNQHVIPREQLKYQYRSSEITK-DLIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQ 241 (318) Q Consensus 163 ~~g~~~~l~~~e~~f~YR~S~~~~-~~iIl~a~l~l~~~~~~~i~~~~~~~~~~R~~~qP~~~~s~GSvFkNP~~~~A~~ 241 (318) .+|++.+++++||+|+||+|.|++ .++++.+.|.+.+.+++.+++.|.++..+|+++||...||||||||||++.+||| T Consensus 171 ~~g~~~~~~~~e~~F~YR~S~fk~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~R~~~qP~~~p~~GS~FkNp~~~~Ag~ 250 (326) T 1hsk_A 171 EQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGK 250 (326) T ss_dssp TTSCEEEEETTTTTCBTTBCHHHHTTCEEEEEEEECEECCHHHHHHHHHHHHHHHHHHSCTTSCEECCCBCCCTTSCHHH T ss_pred CCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 28948871123022311156667667524568998636732567787779987764269998898874146889842799 Q ss_pred HHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCEEEECCCCHHHHH Q ss_conf 026318688206677871567708996899799999999999999999984754004228962168356888 Q gi|254781095|r 242 LIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDFFDHQIVD 313 (318) Q Consensus 242 LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~~iG~f~~~~~~~ 313 (318) |||+|||||+++|+|+||+||||||||.|+|||+||++|+++||++|+++|||.||+||++||+| +++-|+ T Consensus 251 LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~i~~~V~~~fGI~Le~Ev~iiG~~-~~~~~~ 321 (326) T 1hsk_A 251 LIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGEH-PKESLQ 321 (326) T ss_dssp HHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCSEEESCC-CC---- T ss_pred HHHHHCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCEEECCC-CCCCCC T ss_conf 99970888875639798335798899899979999999999999999998898030773997789-853476 |
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} | Back alignment and structure |
---|
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* | Back alignment and structure |
---|
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* | Back alignment and structure |
---|
>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* | Back alignment and structure |
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>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* | Back alignment and structure |
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>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* | Back alignment and structure |
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>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* | Back alignment and structure |
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>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} | Back alignment and structure |
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>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* | Back alignment and structure |
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>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* | Back alignment and structure |
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>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* | Back alignment and structure |
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>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} | Back alignment and structure |
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>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* | Back alignment and structure |
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>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex; HET: FAD GHP 3MY 3FG OMY D3P BMA NAG BDP T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* | Back alignment and structure |
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>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* | Back alignment and structure |
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>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* | Back alignment and structure |
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>3nrz_B Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* | Back alignment and structure |
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>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* | Back alignment and structure |
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>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* | Back alignment and structure |
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>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} | Back alignment and structure |
---|
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* | Back alignment and structure |
---|
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* | Back alignment and structure |
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>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 | Back alignment and structure |
---|
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* | Back alignment and structure |
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>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 | Back alignment and structure |
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>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | |||
d1hska2 | 109 | d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyr | 3e-26 | |
d1uxya2 | 142 | d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyr | 1e-19 | |
d1hska1 | 194 | d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyru | 1e-23 | |
d1uxya1 | 198 | d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruv | 4e-19 |
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 109 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain superfamily: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain species: Staphylococcus aureus [TaxId: 1280] Score = 112 bits (282), Expect = 3e-26 Identities = 38/102 (37%), Positives = 58/102 (56%) Query: 205 ISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCN 264 I A + ++ RE+ QP++ + GS F+ P GH A +LI+ S +G GG ++S H Sbjct: 6 IQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAG 65 Query: 265 FMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDF 306 FM+N DN T D E L V+K V + GI L E++ +G+ Sbjct: 66 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGEH 107 |
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 142 | Back information, alignment and structure |
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>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 194 | Back information, alignment and structure |
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>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 198 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
d1hska1 | 194 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reduct | 100.0 | |
d1uxya1 | 198 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reduct | 100.0 | |
d1wvfa2 | 236 | Flavoprotein subunit of p-cresol methylhydroxylase {Pse | 99.66 | |
d1w1oa2 | 206 | Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 457 | 99.61 | |
d1f0xa2 | 265 | D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} | 99.26 | |
d1hska2 | 109 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reduct | 100.0 | |
d1uxya2 | 142 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reduct | 100.0 | |
d2i0ka2 | 216 | Cholesterol oxidase {Brevibacterium sterolicum [TaxId: | 99.62 | |
d1rm6b2 | 216 | 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-ter | 98.21 | |
d1n62c2 | 177 | Carbon monoxide (CO) dehydrogenase flavoprotein, N-term | 98.18 | |
d1v97a6 | 223 | Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId | 98.11 | |
d1ffvc2 | 177 | Carbon monoxide (CO) dehydrogenase flavoprotein, N-term | 97.98 | |
d1t3qc2 | 176 | Quinoline 2-oxidoreductase medium subunit QorM {Pseudom | 97.77 | |
d1jroa4 | 167 | Xanthine dehydrogenase chain A, domain 3 {Rhodobacter c | 97.49 | |
d1e8ga2 | 268 | Vanillyl-alcohol oxidase {Fungus (Penicillium simplicis | 99.54 |
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: FAD-binding/transporter-associated domain-like superfamily: FAD-binding/transporter-associated domain-like family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain species: Staphylococcus aureus [TaxId: 1280] Probab=100.00 E-value=0 Score=353.33 Aligned_cols=190 Identities=32% Similarity=0.549 Sum_probs=172.3 Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH-CCCCEEEECCCCEEEEECCCEECC Q ss_conf 9999999998750662775488001522576614889999689899999999856-299899984752036604884022 Q gi|254781095|r 5 RISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGIRGV 83 (318) Q Consensus 5 ~~~~~l~~~~~~~~g~i~~n~~L~~~tt~rvGG~A~~~~~p~s~~el~~~l~~~~-~~~p~~iiG~GSNil~~D~~~~G~ 83 (318) .+-+.|+.++.+ .+++.|+||++|||||+||+|++|++|+|.+|+.+++++++ +++|++++|+|||++++|.+++|+ T Consensus 3 ~~~~~l~~~l~~--~~i~~~~~L~~~tt~~vGG~a~~~v~p~s~~el~~~~~~a~~~~ip~~v~G~GSNll~~d~~~~g~ 80 (194) T d1hska1 3 DIYQALQQLIPN--EKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGI 80 (194) T ss_dssp HHHHHHHHHSCG--GGEEEEEEGGGTCTTSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTTCEEEE T ss_pred HHHHHHHHHCCC--CCEEECCCCHHCCEEEECEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEE T ss_conf 899999866683--637827840343271128298899951999999999987564365367860554223577872239 Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC Q ss_conf 02211234431133026651233112215677778875201200038725663243115732158313456664344112 Q gi|254781095|r 84 VLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDR 163 (318) Q Consensus 84 vI~l~~~~~~~i~~~~~~~i~v~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAi~mNAGayG~ei~d~i~~V~~~d~ 163 (318) ||++.. +..++..++ .++|+||+.|.++++++.++||+|+||++|||||||||++|||||||.|++|+|.+|+++++ T Consensus 81 vi~l~~--~~~~~~~~~-~v~~~aG~~~~~l~~~~~~~gl~g~e~~~gipgtvGGai~mNaG~yG~ei~d~v~~v~~v~~ 157 (194) T d1hska1 81 VISLLS--LDHIEVSDD-AIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNE 157 (194) T ss_dssp EEECTT--CCCEEEETT-EEEEETTSBHHHHHHHHHHTTEESCGGGTTCCSBHHHHHHHTCEETTEEHHHHEEEEEEECT T ss_pred EEEEEC--CCCCCCCCC-EEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCCCCCCEEEEEEEEEEEECC T ss_conf 998202--222224697-69998356317888999861034332427766334545552574168417889999999948 Q ss_pred CCCEEEECCCCCCCCCCCCCCCC-CCCEEEEECCCCC Q ss_conf 32100001233443100232246-7620010023545 Q gi|254781095|r 164 KGNQHVIPREQLKYQYRSSEITK-DLIITHVVLRGFP 199 (318) Q Consensus 164 ~g~~~~l~~~e~~f~YR~S~~~~-~~iIl~a~l~l~~ 199 (318) +|++++++++||+|+||+|.|++ ++||++|+|+|.| T Consensus 158 ~G~i~~l~~~e~~f~YR~s~~~~~~~iIl~a~f~L~P 194 (194) T d1hska1 158 QGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAP 194 (194) T ss_dssp TSCEEEEETTTTTCBTTBCHHHHTTCEEEEEEEECEE T ss_pred CCCEEEEEHHHCCCCCCCCCCCCCCEEEEEEEEEEEC T ss_conf 9989998789926307778799999999999999979 |
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
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>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
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>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} | Back information, alignment and structure |
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>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} | Back information, alignment and structure |
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>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Can | ||
1hsk_A_231-304 | 74 | (A:231-304) UDP-N-acetylenolpyruvoylglucosamine re | 8e-22 | |
2gqt_A_199-260 | 62 | (A:199-260) UDP-N-acetylenolpyruvylglucosamine red | 4e-19 | |
3i99_A_277-333 | 57 | (A:277-333) UDP-N-acetylenolpyruvoylglucosamine re | 7e-15 | |
1uxy_A_273-319 | 47 | (A:273-319) MURB, uridine diphospho-N-acetylenolpy | 3e-10 | |
2gqt_A_1-69_261-268 | 77 | (A:1-69,A:261-268) UDP-N-acetylenolpyruvylglucosam | 6e-18 | |
3i99_A_1-82_334-357 | 106 | (A:1-82,A:334-357) UDP-N-acetylenolpyruvoylglucosa | 9e-16 | |
1uxy_A_1-66_320-340 | 87 | (A:1-66,A:320-340) MURB, uridine diphospho-N-acety | 2e-14 | |
1hsk_A_1-99_305-326 | 121 | (A:1-99,A:305-326) UDP-N-acetylenolpyruvoylglucosa | 4e-11 | |
1n62_C_1-176 | 176 | (C:1-176) Carbon monoxide dehydrogenase medium cha | 4e-17 | |
1ffv_C_1-176 | 176 | (C:1-176) CUTM, flavoprotein of carbon monoxide de | 4e-05 | |
1t3q_C_1-174 | 174 | (C:1-174) Quinoline 2-oxidoreductase medium subuni | 0.004 | |
1hsk_A_100-230 | 131 | (A:100-230) UDP-N-acetylenolpyruvoylglucosamine re | 2e-13 | |
2gqt_A_70-198 | 129 | (A:70-198) UDP-N-acetylenolpyruvylglucosamine redu | 1e-12 | |
1uxy_A_67-190 | 124 | (A:67-190) MURB, uridine diphospho-N-acetylenolpyr | 9e-09 | |
3i99_A_83-206 | 124 | (A:83-206) UDP-N-acetylenolpyruvoylglucosamine red | 3e-08 |
>1hsk_A (A:231-304) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus}Length = 74 | Back alignment and structure |
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Score = 98.9 bits (247), Expect = 8e-22 Identities = 29/73 (39%), Positives = 41/73 (56%) Query: 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLG 281 ++ + GS F+ P GH A +LI+ S +G GG ++S H FM+N DN T D E L Sbjct: 1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLI 60 Query: 282 EQVRKKVFNQSGI 294 V+K V + GI Sbjct: 61 HYVQKTVKEKFGI 73 |
>2gqt_A (A:199-260) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*Length = 62 | Back alignment and structure |
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>3i99_A (A:277-333) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}Length = 57 | Back alignment and structure |
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>1uxy_A (A:273-319) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli}Length = 47 | Back alignment and structure |
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>2gqt_A (A:1-69,A:261-268) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*Length = 77 | Back alignment and structure |
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>3i99_A (A:1-82,A:334-357) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}Length = 106 | Back alignment and structure |
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>1uxy_A (A:1-66,A:320-340) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli}Length = 87 | Back alignment and structure |
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>1hsk_A (A:1-99,A:305-326) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus}Length = 121 | Back alignment and structure |
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>1n62_C (C:1-176) Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5}Length = 176 | Back alignment and structure |
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>1ffv_C (C:1-176) CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}Length = 176 | Back alignment and structure |
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>1t3q_C (C:1-174) Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida}Length = 174 | Back alignment and structure |
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>1hsk_A (A:100-230) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus}Length = 131 | Back alignment and structure |
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>2gqt_A (A:70-198) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*Length = 129 | Back alignment and structure |
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>1uxy_A (A:67-190) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli}Length = 124 | Back alignment and structure |
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>3i99_A (A:83-206) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}Length = 124 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 318 | UDP-N-acetylenolpyruvoylglucosamine reductase [Candidat | ||
1hsk_A_231-304 | 74 | UDP-N-acetylenolpyruvoylglucosamine reductase; pep | 99.96 | |
2gqt_A_199-260 | 62 | UDP-N-acetylenolpyruvylglucosamine reductase; pept | 99.89 | |
3i99_A_277-333 | 57 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxi | 99.8 | |
2gqt_A_70-198 | 129 | UDP-N-acetylenolpyruvylglucosamine reductase; pept | 99.87 | |
1hsk_A_100-230 | 131 | UDP-N-acetylenolpyruvoylglucosamine reductase; pep | 99.84 | |
1uxy_A_67-190 | 124 | MURB, uridine diphospho-N-acetylenolpyruvylglucosa | 99.59 | |
3i99_A_83-206 | 124 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxi | 99.5 | |
2exr_A_116-238_483-524 | 165 | Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin | 98.39 | |
2uuu_A_194-315_549-584 | 158 | Alkyldihydroxyacetonephosphate synthase; rhizomeli | 98.15 | |
3i99_A_1-82_334-357 | 106 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxi | 99.73 | |
2gqt_A_1-69_261-268 | 77 | UDP-N-acetylenolpyruvylglucosamine reductase; pept | 99.71 | |
1uxy_A_1-66_320-340 | 87 | MURB, uridine diphospho-N-acetylenolpyruvylglucosa | 99.63 | |
1hsk_A_1-99_305-326 | 121 | UDP-N-acetylenolpyruvoylglucosamine reductase; pep | 99.16 | |
1f0x_A_1-103 | 103 | DLDH, D-lactate dehydrogenase; oxidoreductase; HET | 97.18 | |
1wvf_A_1-112 | 112 | 4-cresol dehydrogenase [hydroxylating] flavoprotei | 97.02 | |
2uuu_A_77-193 | 117 | Alkyldihydroxyacetonephosphate synthase; rhizomeli | 97.02 | |
1e8g_A_1-126 | 126 | Vanillyl-alcohol oxidase; oxidoreductase, flavoenz | 96.69 | |
2exr_A_1-115 | 115 | Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin | 96.59 | |
1zr6_A_1-95 | 95 | Glucooligosaccharide oxidase; alpha + beta, flavoe | 96.55 | |
3js8_A_1-87 | 87 | Cholesterol oxidase; cholsterol, organic solvent s | 95.69 | |
2ipi_A_1-237_481-521 | 278 | Aclacinomycin oxidoreductase (aknox); anthracyclin | 99.71 | |
1w1o_A_1-245_495-534 | 285 | Cytokinin dehydrogenase 1; flavin, oxidoreductase, | 99.57 | |
3fw9_A_1-218_456-495 | 258 | Reticuline oxidase; BI-covalent flavinylation, N-g | 99.57 | |
2bvf_A_1-204_412-459 | 252 | 6-hydroxy-D-nicotine oxidase; autoflavinylation, e | 99.67 | |
1n62_C_1-176 | 176 | Carbon monoxide dehydrogenase medium chain; CODH, | 99.66 | |
2vfr_A_1-182 | 182 | Xylitol oxidase, alditol oxidase; FAD, sugar, poly | 99.64 | |
2i0k_A_1-220 | 220 | Oxidoreductase; MIX alpha beta, covalent FAD, flav | 99.54 | |
1ffv_C_1-176 | 176 | CUTM, flavoprotein of carbon monoxide dehydrogenas | 98.93 | |
1t3q_C_1-174 | 174 | Quinoline 2-oxidoreductase medium subunit; QOR, mo | 98.39 | |
1rm6_B_1-216 | 216 | 4-hydroxybenzoyl-COA reductase beta subunit; xanth | 98.0 | |
2w3s_A_168-245_303-344 | 120 | Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 | 94.2 | |
1uxy_A_273-319 | 47 | MURB, uridine diphospho-N-acetylenolpyruvylglucosa | 99.5 | |
1zr6_A_96-211_452-503 | 168 | Glucooligosaccharide oxidase; alpha + beta, flavoe | 98.83 | |
1wvf_A_113-241 | 129 | 4-cresol dehydrogenase [hydroxylating] flavoprotei | 98.09 | |
2yvs_A_1-114 | 114 | Glycolate oxidase subunit GLCE; oxidoreductase; 2. | 98.04 | |
1e8g_A_127-273 | 147 | Vanillyl-alcohol oxidase; oxidoreductase, flavoenz | 98.0 | |
3js8_A_88-216 | 129 | Cholesterol oxidase; cholsterol, organic solvent s | 97.63 | |
1v97_A_285-540_1311-1332 | 278 | XD, xanthine dehydrogenase; molybdopterin, FYX-051 | 94.03 | |
1uxy_A_224-272 | 49 | MURB, uridine diphospho-N-acetylenolpyruvylglucosa | 98.02 | |
3i99_A_239-276 | 38 | UDP-N-acetylenolpyruvoylglucosamine reductase; oxi | 92.67 |
>1hsk_A (A:231-304) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} | Back alignment and structure |
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Probab=99.96 E-value=2.2e-29 Score=205.63 Aligned_cols=74 Identities=39% Similarity=0.576 Sum_probs=72.1 Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCE Q ss_conf 66704658897278985100026318688206677871567708996899799999999999999999984754 Q gi|254781095|r 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL 295 (318) Q Consensus 222 ~~~~s~GSvFkNP~~~~A~~LIe~~GlKG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~ 295 (318) +++||||||||||++.+||||||+|||||+++|+|+||++|||||||.|+||++|+++||++||++|+++|||+ T Consensus 1 l~~psaGS~FkNP~~~~Ag~LIe~~GlkG~~iG~a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~GI~ 74 (74) T 1hsk_A 1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIE 74 (74) T ss_dssp TTSCEECCCBCCCTTSCHHHHHHHTTCTTCEETTEEECSSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCC T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHCCCCCEECCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 77874263378876600799999848898777698996788858997899899999999999999999988982 |
>2gqt_A (A:199-260) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* | Back alignment and structure |
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>3i99_A (A:277-333) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} | Back alignment and structure |
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>2gqt_A (A:70-198) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* | Back alignment and structure |
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>1hsk_A (A:100-230) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} | Back alignment and structure |
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>1uxy_A (A:67-190) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} | Back alignment and structure |
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>3i99_A (A:83-206) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} | Back alignment and structure |
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>2exr_A (A:116-238,A:483-524) Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* | Back alignment and structure |
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>2uuu_A (A:194-315,A:549-584) Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* | Back alignment and structure |
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>3i99_A (A:1-82,A:334-357) UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} | Back alignment and structure |
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>2gqt_A (A:1-69,A:261-268) UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* | Back alignment and structure |
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>1uxy_A (A:1-66,A:320-340) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} | Back alignment and structure |
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>1hsk_A (A:1-99,A:305-326) UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} | Back alignment and structure |
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>1f0x_A (A:1-103) DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} | Back alignment and structure |
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>1wvf_A (A:1-112) 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} | Back alignment and structure |
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>2uuu_A (A:77-193) Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* | Back alignment and structure |
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>1e8g_A (A:1-126) Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} | Back alignment and structure |
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>2exr_A (A:1-115) Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* | Back alignment and structure |
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>1zr6_A (A:1-95) Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* | Back alignment and structure |
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>3js8_A (A:1-87) Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} | Back alignment and structure |
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>2ipi_A (A:1-237,A:481-521) Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} | Back alignment and structure |
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>1w1o_A (A:1-245,A:495-534) Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} | Back alignment and structure |
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>3fw9_A (A:1-218,A:456-495) Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* | Back alignment and structure |
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>2bvf_A (A:1-204,A:412-459) 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* | Back alignment and structure |
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>1n62_C (C:1-176) Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} | Back alignment and structure |
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>2vfr_A (A:1-182) Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* | Back alignment and structure |
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>2i0k_A (A:1-220) Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} | Back alignment and structure |
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>1ffv_C (C:1-176) CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} | Back alignment and structure |
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>1t3q_C (C:1-174) Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} | Back alignment and structure |
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>1rm6_B (B:1-216) 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} | Back alignment and structure |
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>2w3s_A (A:168-245,A:303-344) Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* | Back alignment and structure |
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>1uxy_A (A:273-319) MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} | Back alignment and structure |
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>1zr6_A (A:96-211,A:452-503) Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* | Back alignment and structure |
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>1wvf_A (A:113-241) 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} | Back alignment and structure |
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>2yvs_A (A:1-114) Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} | Back alignment and structure |
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>1e8g_A (A:127-273) Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} | Back alignment and structure |
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