254781113

254781113

amino acid ABC transporter (permease)

GeneID in NCBI database:8210138Locus tag:CLIBASIA_05075
Protein GI in NCBI database:254781113Protein Accession:YP_003065526.1
Gene range:+(1115204, 1115884)Protein Length:226aa
Gene description:amino acid ABC transporter (permease)
COG prediction:[E] ABC-type amino acid transport system, permease component
KEGG prediction:amino acid ABC transporter (permease); K02029 polar amino acid transport system permease protein
SEED prediction:amino acid ABC transporter, permease protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM4 TM-Helix
TOPPRED4 TM-Helix
HMMTOP5 TM-Helix
MEMSAT5 TM-Helix
MEMSAT_SVM5 TM-Helix
PHOBIUS4 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHEEEHHHccccHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSiisipkgqwdasyaigltrkQTIRhiilpqtittsavplssEFISILKstsvastitIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIEssvtqhtysvdk
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPqtittsavplSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIessvtqhtysvdk
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYiseiirssiisiPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK
***EWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS**********
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS**********
*KYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH******
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xxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxhhhhhhhhhhhhhhhhhhhhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxx
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oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
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MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

IdentityAlignment graphLength Definition E-value
Target226 amino acid ABC transporter (permease) [Candidatus Liber
254780171398 ABC transporter membrane spanning protein (amino a 4e-17
254780172386 general L-amino acid transport system permease pro 2e-13
255764486493 ABC transporter, membrane spanning protein [Candid 5e-04
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Back     alignment 
 Score = 79.7 bits (195), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%)

Query: 12  SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71
           SFP L       T+      FV S ++G  +++     S        HF+    +  PLL
Sbjct: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222

Query: 72  -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106
            +  F+IF GLP + ++       FD                  F+++ I+L+   +A+I
Sbjct: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281

Query: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166
           +EI+RS +I++P+GQ +A+ A+GLT ++  R ++LPQ + +   PL+S+++++LK++S+A
Sbjct: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341

Query: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203
             +   ++      I++ T Q + I     F+YL L+
Sbjct: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Back     alignment 
 Score = 67.4 bits (163), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 18/165 (10%)

Query: 17  LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF---YVWIFRGTPLLVQ 73
           L+  ++VTL I+    +IS+ +G  +A+ R    ++ I ++ +    ++ +FRG PL+  
Sbjct: 173 LWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTV 228

Query: 74  LFVIFYGLPHIGIVF-------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASY 126
           LF+    LP    +F       D  +  ++ ++   SAYI+E++R  + SI KGQ++A+ 
Sbjct: 229 LFMASIMLP----LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284

Query: 127 AIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171
           ++GL+  Q +R II+PQ I      + + FI + K +S+ S I +
Sbjct: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Back     alignment 
 Score = 36.2 bits (82), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 105 YISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164
           Y+S +    I SIP+   D S  +G TR +T++++I P     +A P  +  I +  S +
Sbjct: 359 YVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRT 413

Query: 165 VASTITIPEIFQTAQRIVSTTYQPL 189
           +  T+ +      A R+    ++ +
Sbjct: 414 IGETMIVVLAAGVAARLQFNPFESM 438

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target226 amino acid ABC transporter (permease) [Candidatus Liber
315122482239 amino acid ABC transporter (permease) [Candidatus Liber 1 5e-94
319781053226 polar amino acid ABC transporter inner membrane subunit 1 5e-63
260461455226 polar amino acid ABC transporter, inner membrane subuni 1 1e-62
13473305226 amino acid ABC transporter (permease) [Mesorhizobium lo 1 1e-61
288961662226 polar amino acid transport system permease protein [Azo 1 3e-61
187924662225 polar amino acid ABC transporter inner membrane subunit 1 2e-60
91784367225 ABC polar amino acid transporter, inner membrane subuni 1 2e-60
227823794245 putative amino acid ABC transporter, permease protein [ 1 3e-60
163857187226 putative amino-acid ABC transporter, permease protein [ 1 4e-60
150398331226 polar amino acid ABC transporter inner membrane subunit 1 5e-60
>gi|315122482|ref|YP_004062971.1| amino acid ABC transporter (permease) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 239 Back     alignment and organism information
 Score =  347 bits (891), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 174/225 (77%), Positives = 197/225 (87%), Gaps = 1/225 (0%)

Query: 1   MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60
           M  EWFN+ IDSFPQLLYAA  VTLPIA ISF+ S+I+G  I +IRI F   I S IMH 
Sbjct: 1   MNSEWFNVAIDSFPQLLYAAFFVTLPIALISFIPSIIVGLSITMIRICFPGKI-SFIMHL 59

Query: 61  YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120
           YVWIFRGTPLLVQLF+IFYGLPHIGIV D F AI+IS TLNFSAYISEIIRSSI+SIPKG
Sbjct: 60  YVWIFRGTPLLVQLFIIFYGLPHIGIVLDCFSAIVISFTLNFSAYISEIIRSSILSIPKG 119

Query: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180
           QWDA+Y+IGLTR+QTIRHIILPQ +  SA PLSSEFISILKSTS+AST+T+PEIFQTAQR
Sbjct: 120 QWDAAYSIGLTRQQTIRHIILPQIVVISAAPLSSEFISILKSTSLASTVTLPEIFQTAQR 179

Query: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225
           IVSTTYQPLIIYCE+A +YLILTSFCYIIQ+KIES + ++TYS++
Sbjct: 180 IVSTTYQPLIIYCEIAIIYLILTSFCYIIQMKIESKLKKYTYSMN 224



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|319781053|ref|YP_004140529.1| polar amino acid ABC transporter inner membrane subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 226 Back     alignment and organism information
>gi|260461455|ref|ZP_05809702.1| polar amino acid ABC transporter, inner membrane subunit [Mesorhizobium opportunistum WSM2075] Length = 226 Back     alignment and organism information
>gi|13473305|ref|NP_104872.1| amino acid ABC transporter (permease) [Mesorhizobium loti MAFF303099] Length = 226 Back     alignment and organism information
>gi|288961662|ref|YP_003451972.1| polar amino acid transport system permease protein [Azospirillum sp. B510] Length = 226 Back     alignment and organism information
>gi|187924662|ref|YP_001896304.1| polar amino acid ABC transporter inner membrane subunit [Burkholderia phytofirmans PsJN] Length = 225 Back     alignment and organism information
>gi|91784367|ref|YP_559573.1| ABC polar amino acid transporter, inner membrane subunit [Burkholderia xenovorans LB400] Length = 225 Back     alignment and organism information
>gi|227823794|ref|YP_002827767.1| putative amino acid ABC transporter, permease protein [Sinorhizobium fredii NGR234] Length = 245 Back     alignment and organism information
>gi|163857187|ref|YP_001631485.1| putative amino-acid ABC transporter, permease protein [Bordetella petrii DSM 12804] Length = 226 Back     alignment and organism information
>gi|150398331|ref|YP_001328798.1| polar amino acid ABC transporter inner membrane subunit [Sinorhizobium medicae WSM419] Length = 226 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target226 amino acid ABC transporter (permease) [Candidatus Liber
PRK15100220 PRK15100, PRK15100, amino acid ABC transporter permease 9e-48
COG4160228 COG4160, ArtM, ABC-type arginine/histidine transport sy 9e-37
TIGR03003212 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra 3e-30
COG4215230 COG4215, ArtQ, ABC-type arginine transport system, perm 2e-29
PRK09494219 PRK09494, glnP, glutamine ABC transporter permease prot 1e-25
TIGR03004214 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra 6e-25
PRK11122222 PRK11122, artM, arginine transporter permease subunit A 2e-22
PRK15069234 PRK15069, PRK15069, histidine/lysine/arginine/ornithine 5e-21
PRK15135228 PRK15135, PRK15135, histidine/lysine/arginine/ornithine 3e-18
PRK11123238 PRK11123, PRK11123, arginine transporter permease subun 9e-17
cd06261190 cd06261, TM_PBP2, Transmembrane subunit (TM) found in P 1e-11
COG2011222 COG2011, AbcD, ABC-type metal ion transport system, per 3e-05
COG0765222 COG0765, HisM, ABC-type amino acid transport system, pe 3e-44
TIGR0172699 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, 2e-17
COG0581292 COG0581, PstA, ABC-type phosphate transport system, per 5e-04
TIGR00974271 TIGR00974, 3a0107s02c, phosphate ABC transporter, perme 0.001
COG0573310 COG0573, PstC, ABC-type phosphate transport system, per 0.002
COG4597397 COG4597, BatB, ABC-type amino acid transport system, pe 6e-15
pfam00528183 pfam00528, BPD_transp_1, Binding-protein-dependent tran 3e-08
PRK15107224 PRK15107, PRK15107, glutamate/aspartate transport syste 9e-14
COG1173289 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel t 5e-04
COG1178540 COG1178, ThiP, ABC-type Fe3+ transport system, permease 0.004
PRK10782217 PRK10782, PRK10782, DL-methionine transporter permease 8e-04
COG0600258 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate t 0.001
COG0395281 COG0395, UgpE, ABC-type sugar transport system, permeas 0.001
COG4597397 COG4597, BatB, ABC-type amino acid transport system, pe 0.003
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional Back     alignment and domain information
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD Back     alignment and domain information
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC Back     alignment and domain information
>gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional Back     alignment and domain information
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional Back     alignment and domain information
>gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family Back     alignment and domain information
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA Back     alignment and domain information
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional Back     alignment and domain information
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 226 amino acid ABC transporter (permease) [Candidatus Liber
PRK09494219 glnP glutamine ABC transporter permease protein; Review 100.0
COG0765222 HisM ABC-type amino acid transport system, permease com 100.0
PRK11123238 arginine transporter permease subunit ArtQ; Provisional 100.0
PRK11122222 artM arginine transporter permease subunit ArtM; Provis 100.0
TIGR03003218 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe 100.0
COG4160228 ArtM ABC-type arginine/histidine transport system, perm 100.0
COG4215230 ArtQ ABC-type arginine transport system, permease compo 100.0
TIGR03004216 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe 100.0
PRK10782217 DL-methionine transporter permease subunit; Provisional 100.0
COG4597397 BatB ABC-type amino acid transport system, permease com 100.0
COG2011222 AbcD ABC-type metal ion transport system, permease comp 99.98
PRK10971277 sulfate/thiosulfate transporter subunit; Provisional 99.95
TIGR03226312 PhnU 2-aminoethylphosphonate ABC transporter, permease 99.93
PRK09497285 potB spermidine/putrescine ABC transporter membrane pro 99.93
PRK11602291 cysW sulfate/thiosulfate transporter permease subunit; 99.93
PRK10592281 putrescine transporter subunit: membrane component of A 99.93
COG1177267 PotC ABC-type spermidine/putrescine transport system, p 99.93
COG0581292 PstA ABC-type phosphate transport system, permease comp 99.92
COG1174221 OpuBB ABC-type proline/glycine betaine transport system 99.92
PRK09500257 potC spermidine/putrescine ABC transporter membrane pro 99.92
PRK11275319 pstC phosphate transporter permease subunit; Provisiona 99.92
PRK09421229 modB molybdate ABC transporter permease protein; Review 99.91
PRK10160275 taurine transporter subunit; Provisional 99.91
COG0600258 TauC ABC-type nitrate/sulfonate/bicarbonate transport s 99.91
PRK10952354 glycine betaine transporter membrane protein; Provision 99.91
COG3639283 ABC-type phosphate/phosphonate transport system, permea 99.91
PRK11365263 ssuC alkanesulfonate transporter permease subunit; Prov 99.91
COG1178 540 ThiP ABC-type Fe3+ transport system, permease component 99.9
COG4176290 ProW ABC-type proline/glycine betaine transport system, 99.9
PRK10683317 putrescine transporter subunit: membrane component of A 99.9
TIGR03255272 PhnV 2-aminoethylphosphonate ABC transport system, memb 99.9
PRK11268292 pstA phosphate transporter permease subunit; Provisiona 99.89
PRK09433 536 thiP thiamine transporter membrane protein; Reviewed 99.89
COG0573310 PstC ABC-type phosphate transport system, permease comp 99.89
TIGR02138317 phosphate_pstC phosphate ABC transporter, permease prot 99.89
TIGR00974302 3a0107s02c phosphate ABC transporter, permease protein 99.89
TIGR03262 546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.88
TIGR03262546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.86
COG1175295 UgpA ABC-type sugar transport systems, permease compone 99.85
TIGR02139265 permease_CysT sulfate ABC transporter, permease protein 99.84
COG1173289 DppC ABC-type dipeptide/oligopeptide/nickel transport s 99.84
COG0555274 CysU ABC-type sulfate transport system, permease compon 99.84
PRK10561280 glycerol-3-phosphate transporter permease; Provisional 99.83
PRK10999520 malF maltose transporter membrane protein; Provisional 99.83
COG1176287 PotB ABC-type spermidine/putrescine transport system, p 99.82
COG4149225 ModC ABC-type molybdate transport system, permease comp 99.81
PRK09881296 ATP-dependent peptide transporter membrane subunit; Pro 99.81
TIGR01097192 3A0109s02M phosphonate ABC transporter, permease protei 99.8
PRK09433536 thiP thiamine transporter membrane protein; Reviewed 99.8
COG1178540 ThiP ABC-type Fe3+ transport system, permease component 99.8
PRK10417272 nikC nickel transporter permease NikC; Provisional 99.79
TIGR00969280 3a0106s02 sulfate ABC transporter, permease protein; In 99.79
PRK10913300 dipeptide transporter; Provisional 99.79
TIGR02141212 modB_ABC molybdate ABC transporter, permease protein; I 99.75
PRK10914339 dipeptide transporter permease DppB; Provisional 99.73
PRK10352314 nickel transporter permease NikB; Provisional 99.73
PRK09471306 oppB oligopeptide transporter permease; Reviewed 99.72
COG0601317 DppB ABC-type dipeptide/oligopeptide/nickel transport s 99.69
COG3833282 MalG ABC-type maltose transport systems, permease compo 99.67
TIGR02790258 nickel_nikC nickel ABC transporter, permease subunit Ni 99.64
COG4209309 LplB ABC-type polysaccharide transport system, permease 99.56
TIGR02140275 permease_CysW sulfate ABC transporter, permease protein 99.47
COG4239341 ABC-type uncharacterized transport system, permease com 99.44
TIGR02789315 nickel_nikB nickel ABC transporter, permease subunit Ni 99.44
COG4208287 CysW ABC-type sulfate transport system, permease compon 99.39
COG4132282 ABC-type uncharacterized transport system, permease com 99.27
COG4590733 ABC-type uncharacterized transport system, permease com 99.12
COG4662227 TupA ABC-type tungstate transport system, periplasmic c 99.02
TIGR01253 519 thiP thiamine/thiamine pyrophosphate ABC transporter, p 98.82
TIGR01253519 thiP thiamine/thiamine pyrophosphate ABC transporter, p 98.47
COG4174364 ABC-type uncharacterized transport system, permease com 98.31
PRK10782217 DL-methionine transporter permease subunit; Provisional 95.77
TIGR03416267 ABC_choXWV_perm choline ABC transporter, permease prote 99.9
cd06261190 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic 99.87
CHL00187235 cysT sulfate transport protein; Provisional 99.82
TIGR01581226 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 99.82
COG0395281 UgpE ABC-type sugar transport system, permease componen 99.75
PRK10998296 malG maltose transporter permease; Provisional 99.7
PRK10973281 glycerol-3-phosphate transporter membrane protein; Prov 99.66
COG4168321 SapB ABC-type antimicrobial peptide transport system, p 98.72
COG4171296 SapC ABC-type antimicrobial peptide transport system, p 98.64
COG4986523 ABC-type anion transport system, duplicated permease co 98.54
TIGR01183203 ntrB nitrate ABC transporter, permease protein; InterPr 98.53
COG4135551 ABC-type uncharacterized transport system, permease com 98.47
pfam03649250 UPF0014 Uncharacterized protein family (UPF0014). 97.23
TIGR0172699 HEQRo_perm_3TM amino acid ABC transporter, permease pro 99.89
pfam00528183 BPD_transp_1 Binding-protein-dependent transport system 99.84
COG4986 523 ABC-type anion transport system, duplicated permease co 99.12
COG4135 551 ABC-type uncharacterized transport system, permease com 95.25
PRK10592281 putrescine transporter subunit: membrane component of A 94.49
COG0390256 ABC-type uncharacterized transport system, permease com 93.6
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11123 arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10782 DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein Back     alignment and domain information
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional Back     alignment and domain information
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>PRK11275 pstC phosphate transporter permease subunit; Provisional Back     alignment and domain information
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed Back     alignment and domain information
>PRK10160 taurine transporter subunit; Provisional Back     alignment and domain information
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10952 glycine betaine transporter membrane protein; Provisional Back     alignment and domain information
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV Back     alignment and domain information
>PRK11268 pstA phosphate transporter permease subunit; Provisional Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10561 glycerol-3-phosphate transporter permease; Provisional Back     alignment and domain information
>PRK10999 malF maltose transporter membrane protein; Provisional Back     alignment and domain information
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Back     alignment and domain information
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10417 nikC nickel transporter permease NikC; Provisional Back     alignment and domain information
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>PRK10913 dipeptide transporter; Provisional Back     alignment and domain information
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10914 dipeptide transporter permease DppB; Provisional Back     alignment and domain information
>PRK10352 nickel transporter permease NikB; Provisional Back     alignment and domain information
>PRK09471 oppB oligopeptide transporter permease; Reviewed Back     alignment and domain information
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PRK10782 DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein Back     alignment and domain information
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>CHL00187 cysT sulfate transport protein; Provisional Back     alignment and domain information
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10998 malG maltose transporter permease; Provisional Back     alignment and domain information
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional Back     alignment and domain information
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) Back     alignment and domain information
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems Back     alignment and domain information
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target226 amino acid ABC transporter (permease) [Candidatus Liber
3dhw_A217 D-methionine transport system permease protein METI; AB 1e-11
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 2e-07
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Back     alignment and structure
 Score = 65.2 bits (158), Expect = 1e-11
 Identities = 36/205 (17%), Positives = 85/205 (41%), Gaps = 6/205 (2%)

Query: 11  DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWI 64
           +    LL   +  TL +  +S     +IG  + V+          ++  +   +   V I
Sbjct: 3   EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNI 62

Query: 65  FRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124
           FR  P ++ L  +      I        A I+ LT+  + +I+ ++ ++++ IP G  +A
Sbjct: 63  FRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEA 122

Query: 125 SYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVST 184
           S A+G T  Q +R ++LP+ +       +   I+++  +++   +    + Q   +    
Sbjct: 123 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI 182

Query: 185 TYQPLIIYCELAFVYLILTSFCYII 209
            Y   ++   L  + +++    +  
Sbjct: 183 GYNATVMNTVLVLLVILVYLIQFAG 207
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target226 amino acid ABC transporter (permease) [Candidatus Liber
3dhw_A217 D-methionine transport system permease protein METI; AB 100.0
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 99.96
2onk_C284 Molybdate/tungstate ABC transporter, permease protein; 99.93
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 99.87
2r6g_G296 Maltose transport system permease protein MALG; ABC tra 99.79
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Back     alignment and structure
Probab=100.00  E-value=5.1e-33  Score=198.85  Aligned_cols=207  Identities=19%  Similarity=0.288  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999970------67637999999999998555322222211122333210
Q gi|254781113|r   13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIF------FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI   86 (226)
Q Consensus        13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~------~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~   86 (226)
                      .-.++++++++|+.+++.+++++.++|+++|+....      ..+++.......++.+++++|.+++++......+....
T Consensus         5 ~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~   84 (217)
T 3dhw_A            5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVG   84 (217)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999986444320089999999999999999999999999999999986


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14433333310011000001578999887528336899865174635657787522357644567787889875267999
Q gi|254781113|r   87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA  166 (226)
Q Consensus        87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~  166 (226)
                      ...++..+++++++...||+.+.++++++++|++++||||++|+|+||++|||++||++|.+++++.+.++..++++++.
T Consensus        85 ~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~~~~~~~i~~~~i~  164 (217)
T 3dhw_A           85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG  164 (217)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12369999999999867999999999998589899999871898989996974199789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             997699999999999832357799999999999999999999999999986213
Q gi|254781113|r  167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH  220 (226)
Q Consensus       167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~  220 (226)
                      +.+|.+++.....+.....++. +......+++.+++.....+.++++||++||
T Consensus       165 ~~ig~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~rR  217 (217)
T 3dhw_A          165 GAVGAGGLGQIGYQYGYIGYNA-TVMNTVLVLLVILVYLIQFAGDRIVRAVTRK  217 (217)
T ss_dssp             CSTTCCHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9998879999999999986008-9999999999999999999999999975699
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Back     alignment and structure
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Back     alignment and structure
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Back     alignment and structure
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 226 amino acid ABC transporter (permease) [Candidatus Liber
d3dhwa1203 f.58.1.1 (A:6-208) D-methionine transport system permea 4e-12
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 6/199 (3%)

Query: 16  LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69
           LL   +  TL +  +S     +IG  + V+          ++  +   +   V IFR  P
Sbjct: 3   LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 62

Query: 70  LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129
            ++ L  +      I        A I+ LT+  + +I+ ++ ++++ IP G  +AS A+G
Sbjct: 63  FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122

Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189
            T  Q +R ++LP+ +       +   I+++  +++   +    + Q   +     Y   
Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182

Query: 190 IIYCELAFVYLILTSFCYI 208
           ++   L  + +++    + 
Sbjct: 183 VMNTVLVLLVILVYLIQFA 201

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target226 amino acid ABC transporter (permease) [Candidatus Liber
d3dhwa1203 D-methionine transport system permease protein MetI {Es 99.96
d2onkc1252 Molybdate/tungstate transport system permease protein W 99.91
d3d31c1248 Sulfate/molybdate ABC transporter, permease protein {Me 99.91
d2r6gf2244 Maltose transport system permease protein MalF {Escheri 99.82
d2r6gg1290 Maltose transport system permease protein MalG {Escheri 99.82
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.1e-30  Score=180.64  Aligned_cols=192  Identities=20%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999999999999970------67637999999999998555322222211122333210144
Q gi|254781113|r   16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIF------FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFD   89 (226)
Q Consensus        16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~------~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~   89 (226)
                      ++++++++|+.+++.+++++.++|+++|+....      .+++........++++++++|..+++++.+...........
T Consensus         3 lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~   82 (203)
T d3dhwa1           3 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI   82 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999999999999999999999999987444320089999999999999999999999999986355404541


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33333310011000001578999887528336899865174635657787522357644567787889875267999997
Q gi|254781113|r   90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI  169 (226)
Q Consensus        90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i  169 (226)
                      ++.++++++++++.||+.+.++++++++|++|+||||++|+|+||++|||++||+.|.++++..++++..+++++++..+
T Consensus        83 ~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~i  162 (203)
T d3dhwa1          83 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV  162 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             19999999999864899999998888436206899988699444241884099769999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             699999999999832357799999999999999999999
Q gi|254781113|r  170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYI  208 (226)
Q Consensus       170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~  208 (226)
                      |.+++....++.+...+++.......... +++....++
T Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~li~~  200 (203)
T d3dhwa1         163 GAGGLGQIGYQYGYIGYNATVMNTVLVLL-VILVYLIQF  200 (203)
T ss_dssp             TCCHHHHHHHHHHHSSCCTTHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHH
T ss_conf             77599999999998740289999999999-999999999
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 226 amino acid ABC transporter (permease) [Candidatus
3dhw_A_217 (A:) D-methionine transport system permease protei 2e-17
3d31_C_295 (C:) Sulfate/molybdate ABC transporter, permease p 7e-09
2r6g_F_269-326_360-453152 (F:269-326,F:360-453) Maltose transport system per 3e-10
2onk_C_69-249181 (C:69-249) Molybdate/tungstate ABC transporter, pe 7e-07
2r6g_G_73-244172 (G:73-244) Maltose transport system permease prote 1e-04
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 Back     alignment and structure
 Score = 83.9 bits (207), Expect = 2e-17
 Identities = 36/200 (18%), Positives = 84/200 (42%), Gaps = 6/200 (3%)

Query: 16  LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69
           LL   +  TL +  +S     +IG  + V+          ++  +   +   V IFR  P
Sbjct: 8   LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 67

Query: 70  LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129
            ++ L  +      I        A I+ LT+  + +I+ ++ ++++ IP G  +AS A+G
Sbjct: 68  FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127

Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189
            T  Q +R ++LP+ +       +   I+++  +++   +    + Q   +     Y   
Sbjct: 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 187

Query: 190 IIYCELAFVYLILTSFCYII 209
           ++   L  + +++    +  
Sbjct: 188 VMNTVLVLLVILVYLIQFAG 207
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target226 amino acid ABC transporter (permease) [Candidatus Liber
3dhw_A_217 D-methionine transport system permease protein MET 99.97
3d31_C_295 Sulfate/molybdate ABC transporter, permease protei 99.95
2onk_C_69-249181 Molybdate/tungstate ABC transporter, permease prot 99.89
2r6g_G_73-244172 Maltose transport system permease protein MALG; AB 99.85
2r6g_F_269-326_360-453152 Maltose transport system permease protein MALF; AB 99.84
3dhw_A_217 D-methionine transport system permease protein MET 93.42
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} Back     alignment and structure
Probab=99.97  E-value=1.3e-31  Score=192.03  Aligned_cols=207  Identities=19%  Similarity=0.286  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999999706------7637999999999998555322222211122333210
Q gi|254781113|r   13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFF------SDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI   86 (226)
Q Consensus        13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~------~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~   86 (226)
                      ..+.+++++++|+.+++.++++++++|+++|+...+.      ..+.+........+.++++|.++.+...+...+..+.
T Consensus         5 ~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (217)
T 3dhw_A            5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVG   84 (217)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999999999999987344320189999999999999999999999999986455204


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14433333310011000001578999887528336899865174635657787522357644567787889875267999
Q gi|254781113|r   87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA  166 (226)
Q Consensus        87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~  166 (226)
                      ...++.+.++++++...||+.++.|++++++|++++|||+++|+|+||++|||++||++|.+++++.+.+...+++++.+
T Consensus        85 ~~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v~lP~~~p~i~~~~~~~~~~~~~~~~~~  164 (217)
T 3dhw_A           85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG  164 (217)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53018899898899724689899998888615027788860698742142673099769999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             997699999999999832357799999999999999999999999999986213
Q gi|254781113|r  167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH  220 (226)
Q Consensus       167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~  220 (226)
                      +.+|.++....+++....++++...+ ..+++..++...+..+.++++||++||
T Consensus       165 ~~ig~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~l~~~~~rR  217 (217)
T 3dhw_A          165 GAVGAGGLGQIGYQYGYIGYNATVMN-TVLVLLVILVYLIQFAGDRIVRAVTRK  217 (217)
T ss_dssp             CSTTCCHHHHHHHHHHHSSCCTTHHH-HHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99987599999999999750189999-999999999999999999999985699
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} Back     alignment and structure