254781113
amino acid ABC transporter (permease)
GeneID in NCBI database: | 8210138 | Locus tag: | CLIBASIA_05075 |
Protein GI in NCBI database: | 254781113 | Protein Accession: | YP_003065526.1 |
Gene range: | +(1115204, 1115884) | Protein Length: | 226aa |
Gene description: | amino acid ABC transporter (permease) | ||
COG prediction: | [E] ABC-type amino acid transport system, permease component | ||
KEGG prediction: | amino acid ABC transporter (permease); K02029 polar amino acid transport system permease protein | ||
SEED prediction: | amino acid ABC transporter, permease protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | |||
254780171 | 398 | ABC transporter membrane spanning protein (amino a | 4e-17 | ||
254780172 | 386 | general L-amino acid transport system permease pro | 2e-13 | ||
255764486 | 493 | ABC transporter, membrane spanning protein [Candid | 5e-04 |
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 398 | Back alignment |
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Score = 79.7 bits (195), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%) Query: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71 SFP L T+ FV S ++G +++ S HF+ + PLL Sbjct: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222 Query: 72 -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106 + F+IF GLP + ++ FD F+++ I+L+ +A+I Sbjct: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281 Query: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 +EI+RS +I++P+GQ +A+ A+GLT ++ R ++LPQ + + PL+S+++++LK++S+A Sbjct: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341 Query: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203 + ++ I++ T Q + I F+YL L+ Sbjct: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378 |
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 | Back alignment |
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Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 18/165 (10%) Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF---YVWIFRGTPLLVQ 73 L+ ++VTL I+ +IS+ +G +A+ R ++ I ++ + ++ +FRG PL+ Sbjct: 173 LWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTV 228 Query: 74 LFVIFYGLPHIGIVF-------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASY 126 LF+ LP +F D + ++ ++ SAYI+E++R + SI KGQ++A+ Sbjct: 229 LFMASIMLP----LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284 Query: 127 AIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171 ++GL+ Q +R II+PQ I + + FI + K +S+ S I + Sbjct: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 |
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 | Back alignment |
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Score = 36.2 bits (82), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 105 YISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 Y+S + I SIP+ D S +G TR +T++++I P +A P + I + S + Sbjct: 359 YVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRT 413 Query: 165 VASTITIPEIFQTAQRIVSTTYQPL 189 + T+ + A R+ ++ + Sbjct: 414 IGETMIVVLAAGVAARLQFNPFESM 438 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | |||
315122482 | 239 | amino acid ABC transporter (permease) [Candidatus Liber | 1 | 5e-94 | |
319781053 | 226 | polar amino acid ABC transporter inner membrane subunit | 1 | 5e-63 | |
260461455 | 226 | polar amino acid ABC transporter, inner membrane subuni | 1 | 1e-62 | |
13473305 | 226 | amino acid ABC transporter (permease) [Mesorhizobium lo | 1 | 1e-61 | |
288961662 | 226 | polar amino acid transport system permease protein [Azo | 1 | 3e-61 | |
187924662 | 225 | polar amino acid ABC transporter inner membrane subunit | 1 | 2e-60 | |
91784367 | 225 | ABC polar amino acid transporter, inner membrane subuni | 1 | 2e-60 | |
227823794 | 245 | putative amino acid ABC transporter, permease protein [ | 1 | 3e-60 | |
163857187 | 226 | putative amino-acid ABC transporter, permease protein [ | 1 | 4e-60 | |
150398331 | 226 | polar amino acid ABC transporter inner membrane subunit | 1 | 5e-60 |
>gi|315122482|ref|YP_004062971.1| amino acid ABC transporter (permease) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 239 | Back alignment and organism information |
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Score = 347 bits (891), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 174/225 (77%), Positives = 197/225 (87%), Gaps = 1/225 (0%) Query: 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60 M EWFN+ IDSFPQLLYAA VTLPIA ISF+ S+I+G I +IRI F I S IMH Sbjct: 1 MNSEWFNVAIDSFPQLLYAAFFVTLPIALISFIPSIIVGLSITMIRICFPGKI-SFIMHL 59 Query: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120 YVWIFRGTPLLVQLF+IFYGLPHIGIV D F AI+IS TLNFSAYISEIIRSSI+SIPKG Sbjct: 60 YVWIFRGTPLLVQLFIIFYGLPHIGIVLDCFSAIVISFTLNFSAYISEIIRSSILSIPKG 119 Query: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180 QWDA+Y+IGLTR+QTIRHIILPQ + SA PLSSEFISILKSTS+AST+T+PEIFQTAQR Sbjct: 120 QWDAAYSIGLTRQQTIRHIILPQIVVISAAPLSSEFISILKSTSLASTVTLPEIFQTAQR 179 Query: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225 IVSTTYQPLIIYCE+A +YLILTSFCYIIQ+KIES + ++TYS++ Sbjct: 180 IVSTTYQPLIIYCEIAIIYLILTSFCYIIQMKIESKLKKYTYSMN 224 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319781053|ref|YP_004140529.1| polar amino acid ABC transporter inner membrane subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 226 | Back alignment and organism information |
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>gi|260461455|ref|ZP_05809702.1| polar amino acid ABC transporter, inner membrane subunit [Mesorhizobium opportunistum WSM2075] Length = 226 | Back alignment and organism information |
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>gi|13473305|ref|NP_104872.1| amino acid ABC transporter (permease) [Mesorhizobium loti MAFF303099] Length = 226 | Back alignment and organism information |
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>gi|288961662|ref|YP_003451972.1| polar amino acid transport system permease protein [Azospirillum sp. B510] Length = 226 | Back alignment and organism information |
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>gi|187924662|ref|YP_001896304.1| polar amino acid ABC transporter inner membrane subunit [Burkholderia phytofirmans PsJN] Length = 225 | Back alignment and organism information |
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>gi|91784367|ref|YP_559573.1| ABC polar amino acid transporter, inner membrane subunit [Burkholderia xenovorans LB400] Length = 225 | Back alignment and organism information |
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>gi|227823794|ref|YP_002827767.1| putative amino acid ABC transporter, permease protein [Sinorhizobium fredii NGR234] Length = 245 | Back alignment and organism information |
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>gi|163857187|ref|YP_001631485.1| putative amino-acid ABC transporter, permease protein [Bordetella petrii DSM 12804] Length = 226 | Back alignment and organism information |
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>gi|150398331|ref|YP_001328798.1| polar amino acid ABC transporter inner membrane subunit [Sinorhizobium medicae WSM419] Length = 226 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
PRK15100 | 220 | PRK15100, PRK15100, amino acid ABC transporter permease | 9e-48 | |
COG4160 | 228 | COG4160, ArtM, ABC-type arginine/histidine transport sy | 9e-37 | |
TIGR03003 | 212 | TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra | 3e-30 | |
COG4215 | 230 | COG4215, ArtQ, ABC-type arginine transport system, perm | 2e-29 | |
PRK09494 | 219 | PRK09494, glnP, glutamine ABC transporter permease prot | 1e-25 | |
TIGR03004 | 214 | TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra | 6e-25 | |
PRK11122 | 222 | PRK11122, artM, arginine transporter permease subunit A | 2e-22 | |
PRK15069 | 234 | PRK15069, PRK15069, histidine/lysine/arginine/ornithine | 5e-21 | |
PRK15135 | 228 | PRK15135, PRK15135, histidine/lysine/arginine/ornithine | 3e-18 | |
PRK11123 | 238 | PRK11123, PRK11123, arginine transporter permease subun | 9e-17 | |
cd06261 | 190 | cd06261, TM_PBP2, Transmembrane subunit (TM) found in P | 1e-11 | |
COG2011 | 222 | COG2011, AbcD, ABC-type metal ion transport system, per | 3e-05 | |
COG0765 | 222 | COG0765, HisM, ABC-type amino acid transport system, pe | 3e-44 | |
TIGR01726 | 99 | TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, | 2e-17 | |
COG0581 | 292 | COG0581, PstA, ABC-type phosphate transport system, per | 5e-04 | |
TIGR00974 | 271 | TIGR00974, 3a0107s02c, phosphate ABC transporter, perme | 0.001 | |
COG0573 | 310 | COG0573, PstC, ABC-type phosphate transport system, per | 0.002 | |
COG4597 | 397 | COG4597, BatB, ABC-type amino acid transport system, pe | 6e-15 | |
pfam00528 | 183 | pfam00528, BPD_transp_1, Binding-protein-dependent tran | 3e-08 | |
PRK15107 | 224 | PRK15107, PRK15107, glutamate/aspartate transport syste | 9e-14 | |
COG1173 | 289 | COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel t | 5e-04 | |
COG1178 | 540 | COG1178, ThiP, ABC-type Fe3+ transport system, permease | 0.004 | |
PRK10782 | 217 | PRK10782, PRK10782, DL-methionine transporter permease | 8e-04 | |
COG0600 | 258 | COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate t | 0.001 | |
COG0395 | 281 | COG0395, UgpE, ABC-type sugar transport system, permeas | 0.001 | |
COG4597 | 397 | COG4597, BatB, ABC-type amino acid transport system, pe | 0.003 |
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional | Back alignment and domain information |
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>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD | Back alignment and domain information |
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>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
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>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC | Back alignment and domain information |
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>gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM; Provisional | Back alignment and domain information |
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>gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional | Back alignment and domain information |
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>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional | Back alignment and domain information |
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>gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ; Provisional | Back alignment and domain information |
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>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
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>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | Back alignment and domain information |
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>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA | Back alignment and domain information |
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>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
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>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional | Back alignment and domain information |
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>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
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>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
PRK09494 | 219 | glnP glutamine ABC transporter permease protein; Review | 100.0 | |
COG0765 | 222 | HisM ABC-type amino acid transport system, permease com | 100.0 | |
PRK11123 | 238 | arginine transporter permease subunit ArtQ; Provisional | 100.0 | |
PRK11122 | 222 | artM arginine transporter permease subunit ArtM; Provis | 100.0 | |
TIGR03003 | 218 | ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe | 100.0 | |
COG4160 | 228 | ArtM ABC-type arginine/histidine transport system, perm | 100.0 | |
COG4215 | 230 | ArtQ ABC-type arginine transport system, permease compo | 100.0 | |
TIGR03004 | 216 | ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe | 100.0 | |
PRK10782 | 217 | DL-methionine transporter permease subunit; Provisional | 100.0 | |
COG4597 | 397 | BatB ABC-type amino acid transport system, permease com | 100.0 | |
COG2011 | 222 | AbcD ABC-type metal ion transport system, permease comp | 99.98 | |
PRK10971 | 277 | sulfate/thiosulfate transporter subunit; Provisional | 99.95 | |
TIGR03226 | 312 | PhnU 2-aminoethylphosphonate ABC transporter, permease | 99.93 | |
PRK09497 | 285 | potB spermidine/putrescine ABC transporter membrane pro | 99.93 | |
PRK11602 | 291 | cysW sulfate/thiosulfate transporter permease subunit; | 99.93 | |
PRK10592 | 281 | putrescine transporter subunit: membrane component of A | 99.93 | |
COG1177 | 267 | PotC ABC-type spermidine/putrescine transport system, p | 99.93 | |
COG0581 | 292 | PstA ABC-type phosphate transport system, permease comp | 99.92 | |
COG1174 | 221 | OpuBB ABC-type proline/glycine betaine transport system | 99.92 | |
PRK09500 | 257 | potC spermidine/putrescine ABC transporter membrane pro | 99.92 | |
PRK11275 | 319 | pstC phosphate transporter permease subunit; Provisiona | 99.92 | |
PRK09421 | 229 | modB molybdate ABC transporter permease protein; Review | 99.91 | |
PRK10160 | 275 | taurine transporter subunit; Provisional | 99.91 | |
COG0600 | 258 | TauC ABC-type nitrate/sulfonate/bicarbonate transport s | 99.91 | |
PRK10952 | 354 | glycine betaine transporter membrane protein; Provision | 99.91 | |
COG3639 | 283 | ABC-type phosphate/phosphonate transport system, permea | 99.91 | |
PRK11365 | 263 | ssuC alkanesulfonate transporter permease subunit; Prov | 99.91 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.9 | |
COG4176 | 290 | ProW ABC-type proline/glycine betaine transport system, | 99.9 | |
PRK10683 | 317 | putrescine transporter subunit: membrane component of A | 99.9 | |
TIGR03255 | 272 | PhnV 2-aminoethylphosphonate ABC transport system, memb | 99.9 | |
PRK11268 | 292 | pstA phosphate transporter permease subunit; Provisiona | 99.89 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.89 | |
COG0573 | 310 | PstC ABC-type phosphate transport system, permease comp | 99.89 | |
TIGR02138 | 317 | phosphate_pstC phosphate ABC transporter, permease prot | 99.89 | |
TIGR00974 | 302 | 3a0107s02c phosphate ABC transporter, permease protein | 99.89 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.88 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.86 | |
COG1175 | 295 | UgpA ABC-type sugar transport systems, permease compone | 99.85 | |
TIGR02139 | 265 | permease_CysT sulfate ABC transporter, permease protein | 99.84 | |
COG1173 | 289 | DppC ABC-type dipeptide/oligopeptide/nickel transport s | 99.84 | |
COG0555 | 274 | CysU ABC-type sulfate transport system, permease compon | 99.84 | |
PRK10561 | 280 | glycerol-3-phosphate transporter permease; Provisional | 99.83 | |
PRK10999 | 520 | malF maltose transporter membrane protein; Provisional | 99.83 | |
COG1176 | 287 | PotB ABC-type spermidine/putrescine transport system, p | 99.82 | |
COG4149 | 225 | ModC ABC-type molybdate transport system, permease comp | 99.81 | |
PRK09881 | 296 | ATP-dependent peptide transporter membrane subunit; Pro | 99.81 | |
TIGR01097 | 192 | 3A0109s02M phosphonate ABC transporter, permease protei | 99.8 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.8 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.8 | |
PRK10417 | 272 | nikC nickel transporter permease NikC; Provisional | 99.79 | |
TIGR00969 | 280 | 3a0106s02 sulfate ABC transporter, permease protein; In | 99.79 | |
PRK10913 | 300 | dipeptide transporter; Provisional | 99.79 | |
TIGR02141 | 212 | modB_ABC molybdate ABC transporter, permease protein; I | 99.75 | |
PRK10914 | 339 | dipeptide transporter permease DppB; Provisional | 99.73 | |
PRK10352 | 314 | nickel transporter permease NikB; Provisional | 99.73 | |
PRK09471 | 306 | oppB oligopeptide transporter permease; Reviewed | 99.72 | |
COG0601 | 317 | DppB ABC-type dipeptide/oligopeptide/nickel transport s | 99.69 | |
COG3833 | 282 | MalG ABC-type maltose transport systems, permease compo | 99.67 | |
TIGR02790 | 258 | nickel_nikC nickel ABC transporter, permease subunit Ni | 99.64 | |
COG4209 | 309 | LplB ABC-type polysaccharide transport system, permease | 99.56 | |
TIGR02140 | 275 | permease_CysW sulfate ABC transporter, permease protein | 99.47 | |
COG4239 | 341 | ABC-type uncharacterized transport system, permease com | 99.44 | |
TIGR02789 | 315 | nickel_nikB nickel ABC transporter, permease subunit Ni | 99.44 | |
COG4208 | 287 | CysW ABC-type sulfate transport system, permease compon | 99.39 | |
COG4132 | 282 | ABC-type uncharacterized transport system, permease com | 99.27 | |
COG4590 | 733 | ABC-type uncharacterized transport system, permease com | 99.12 | |
COG4662 | 227 | TupA ABC-type tungstate transport system, periplasmic c | 99.02 | |
TIGR01253 | 519 | thiP thiamine/thiamine pyrophosphate ABC transporter, p | 98.82 | |
TIGR01253 | 519 | thiP thiamine/thiamine pyrophosphate ABC transporter, p | 98.47 | |
COG4174 | 364 | ABC-type uncharacterized transport system, permease com | 98.31 | |
PRK10782 | 217 | DL-methionine transporter permease subunit; Provisional | 95.77 | |
TIGR03416 | 267 | ABC_choXWV_perm choline ABC transporter, permease prote | 99.9 | |
cd06261 | 190 | TM_PBP2 Transmembrane subunit (TM) found in Periplasmic | 99.87 | |
CHL00187 | 235 | cysT sulfate transport protein; Provisional | 99.82 | |
TIGR01581 | 226 | Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 | 99.82 | |
COG0395 | 281 | UgpE ABC-type sugar transport system, permease componen | 99.75 | |
PRK10998 | 296 | malG maltose transporter permease; Provisional | 99.7 | |
PRK10973 | 281 | glycerol-3-phosphate transporter membrane protein; Prov | 99.66 | |
COG4168 | 321 | SapB ABC-type antimicrobial peptide transport system, p | 98.72 | |
COG4171 | 296 | SapC ABC-type antimicrobial peptide transport system, p | 98.64 | |
COG4986 | 523 | ABC-type anion transport system, duplicated permease co | 98.54 | |
TIGR01183 | 203 | ntrB nitrate ABC transporter, permease protein; InterPr | 98.53 | |
COG4135 | 551 | ABC-type uncharacterized transport system, permease com | 98.47 | |
pfam03649 | 250 | UPF0014 Uncharacterized protein family (UPF0014). | 97.23 | |
TIGR01726 | 99 | HEQRo_perm_3TM amino acid ABC transporter, permease pro | 99.89 | |
pfam00528 | 183 | BPD_transp_1 Binding-protein-dependent transport system | 99.84 | |
COG4986 | 523 | ABC-type anion transport system, duplicated permease co | 99.12 | |
COG4135 | 551 | ABC-type uncharacterized transport system, permease com | 95.25 | |
PRK10592 | 281 | putrescine transporter subunit: membrane component of A | 94.49 | |
COG0390 | 256 | ABC-type uncharacterized transport system, permease com | 93.6 |
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
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>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK11123 arginine transporter permease subunit ArtQ; Provisional | Back alignment and domain information |
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>PRK11122 artM arginine transporter permease subunit ArtM; Provisional | Back alignment and domain information |
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>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>PRK10782 DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
---|
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
---|
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein | Back alignment and domain information |
---|
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>PRK11275 pstC phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>PRK10160 taurine transporter subunit; Provisional | Back alignment and domain information |
---|
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10952 glycine betaine transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV | Back alignment and domain information |
---|
>PRK11268 pstA phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>PRK10561 glycerol-3-phosphate transporter permease; Provisional | Back alignment and domain information |
---|
>PRK10999 malF maltose transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional | Back alignment and domain information |
---|
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10417 nikC nickel transporter permease NikC; Provisional | Back alignment and domain information |
---|
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>PRK10913 dipeptide transporter; Provisional | Back alignment and domain information |
---|
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>PRK10914 dipeptide transporter permease DppB; Provisional | Back alignment and domain information |
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>PRK10352 nickel transporter permease NikB; Provisional | Back alignment and domain information |
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>PRK09471 oppB oligopeptide transporter permease; Reviewed | Back alignment and domain information |
---|
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
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>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
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>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] | Back alignment and domain information |
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>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>PRK10782 DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
---|
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein | Back alignment and domain information |
---|
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
---|
>CHL00187 cysT sulfate transport protein; Provisional | Back alignment and domain information |
---|
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>PRK10998 malG maltose transporter permease; Provisional | Back alignment and domain information |
---|
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
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>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
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>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) | Back alignment and domain information |
---|
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems | Back alignment and domain information |
---|
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
---|
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 1e-11 | |
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 2e-07 |
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 | Back alignment and structure |
---|
Score = 65.2 bits (158), Expect = 1e-11 Identities = 36/205 (17%), Positives = 85/205 (41%), Gaps = 6/205 (2%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWI 64 + LL + TL + +S +IG + V+ ++ + + V I Sbjct: 3 EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNI 62 Query: 65 FRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124 FR P ++ L + I A I+ LT+ + +I+ ++ ++++ IP G +A Sbjct: 63 FRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEA 122 Query: 125 SYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVST 184 S A+G T Q +R ++LP+ + + I+++ +++ + + Q + Sbjct: 123 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI 182 Query: 185 TYQPLIIYCELAFVYLILTSFCYII 209 Y ++ L + +++ + Sbjct: 183 GYNATVMNTVLVLLVILVYLIQFAG 207 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 100.0 | |
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 99.96 | |
2onk_C | 284 | Molybdate/tungstate ABC transporter, permease protein; | 99.93 | |
2r6g_F | 514 | Maltose transport system permease protein MALF; ABC tra | 99.87 | |
2r6g_G | 296 | Maltose transport system permease protein MALG; ABC tra | 99.79 |
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 | Back alignment and structure |
---|
Probab=100.00 E-value=5.1e-33 Score=198.85 Aligned_cols=207 Identities=19% Similarity=0.288 Sum_probs=166.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999999970------67637999999999998555322222211122333210 Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIF------FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI 86 (226) Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~------~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~ 86 (226) .-.++++++++|+.+++.+++++.++|+++|+.... ..+++.......++.+++++|.+++++......+.... T Consensus 5 ~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 84 (217) T 3dhw_A 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVG 84 (217) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999986444320089999999999999999999999999999999986 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787889875267999 Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 (226) Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~ 166 (226) ...++..+++++++...||+.+.++++++++|++++||||++|+|+||++|||++||++|.+++++.+.++..++++++. T Consensus 85 ~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~~~~~~~i~~~~i~ 164 (217) T 3dhw_A 85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164 (217) T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 12369999999999867999999999998589899999871898989996974199789999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 997699999999999832357799999999999999999999999999986213 Q gi|254781113|r 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226) Q Consensus 167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226) +.+|.+++.....+.....++. +......+++.+++.....+.++++||++|| T Consensus 165 ~~ig~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~rR 217 (217) T 3dhw_A 165 GAVGAGGLGQIGYQYGYIGYNA-TVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217) T ss_dssp CSTTCCHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9998879999999999986008-9999999999999999999999999975699 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 | Back alignment and structure |
---|
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 | Back alignment and structure |
---|
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F | Back alignment and structure |
---|
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
226 | amino acid ABC transporter (permease) [Candidatus Liber | |||
d3dhwa1 | 203 | f.58.1.1 (A:6-208) D-methionine transport system permea | 4e-12 |
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 | Back information, alignment and structure |
---|
class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: D-methionine transport system permease protein MetI species: Escherichia coli [TaxId: 562] Score = 65.1 bits (158), Expect = 4e-12 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 6/199 (3%) Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69 LL + TL + +S +IG + V+ ++ + + V IFR P Sbjct: 3 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 62 Query: 70 LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129 ++ L + I A I+ LT+ + +I+ ++ ++++ IP G +AS A+G Sbjct: 63 FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122 Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189 T Q +R ++LP+ + + I+++ +++ + + Q + Y Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182 Query: 190 IIYCELAFVYLILTSFCYI 208 ++ L + +++ + Sbjct: 183 VMNTVLVLLVILVYLIQFA 201 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
d3dhwa1 | 203 | D-methionine transport system permease protein MetI {Es | 99.96 | |
d2onkc1 | 252 | Molybdate/tungstate transport system permease protein W | 99.91 | |
d3d31c1 | 248 | Sulfate/molybdate ABC transporter, permease protein {Me | 99.91 | |
d2r6gf2 | 244 | Maltose transport system permease protein MalF {Escheri | 99.82 | |
d2r6gg1 | 290 | Maltose transport system permease protein MalG {Escheri | 99.82 |
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: D-methionine transport system permease protein MetI species: Escherichia coli [TaxId: 562] Probab=99.96 E-value=6.1e-30 Score=180.64 Aligned_cols=192 Identities=20% Similarity=0.311 Sum_probs=154.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999999999999999999970------67637999999999998555322222211122333210144 Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIF------FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFD 89 (226) Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~------~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~ 89 (226) ++++++++|+.+++.+++++.++|+++|+.... .+++........++++++++|..+++++.+........... T Consensus 3 lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~ 82 (203) T d3dhwa1 3 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI 82 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 89999999999999999999999999999999987444320089999999999999999999999999986355404541 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33333310011000001578999887528336899865174635657787522357644567787889875267999997 Q gi|254781113|r 90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI 169 (226) Q Consensus 90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i 169 (226) ++.++++++++++.||+.+.++++++++|++|+||||++|+|+||++|||++||+.|.++++..++++..+++++++..+ T Consensus 83 ~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~i 162 (203) T d3dhwa1 83 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV 162 (203) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCST T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 19999999999864899999998888436206899988699444241884099769999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 699999999999832357799999999999999999999 Q gi|254781113|r 170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYI 208 (226) Q Consensus 170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~ 208 (226) |.+++....++.+...+++.......... +++....++ T Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~li~~ 200 (203) T d3dhwa1 163 GAGGLGQIGYQYGYIGYNATVMNTVLVLL-VILVYLIQF 200 (203) T ss_dssp TCCHHHHHHHHHHHSSCCTTHHHHHHHHH-HHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHH T ss_conf 77599999999998740289999999999-999999999 |
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
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>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 226 | amino acid ABC transporter (permease) [Candidatus | ||
3dhw_A_ | 217 | (A:) D-methionine transport system permease protei | 2e-17 | |
3d31_C_ | 295 | (C:) Sulfate/molybdate ABC transporter, permease p | 7e-09 | |
2r6g_F_269-326_360-453 | 152 | (F:269-326,F:360-453) Maltose transport system per | 3e-10 | |
2onk_C_69-249 | 181 | (C:69-249) Molybdate/tungstate ABC transporter, pe | 7e-07 | |
2r6g_G_73-244 | 172 | (G:73-244) Maltose transport system permease prote | 1e-04 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 | Back alignment and structure |
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Score = 83.9 bits (207), Expect = 2e-17 Identities = 36/200 (18%), Positives = 84/200 (42%), Gaps = 6/200 (3%) Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69 LL + TL + +S +IG + V+ ++ + + V IFR P Sbjct: 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 67 Query: 70 LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129 ++ L + I A I+ LT+ + +I+ ++ ++++ IP G +AS A+G Sbjct: 68 FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127 Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189 T Q +R ++LP+ + + I+++ +++ + + Q + Y Sbjct: 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 187 Query: 190 IIYCELAFVYLILTSFCYII 209 ++ L + +++ + Sbjct: 188 VMNTVLVLLVILVYLIQFAG 207 |
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 | Back alignment and structure |
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>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 | Back alignment and structure |
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>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 | Back alignment and structure |
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>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 226 | amino acid ABC transporter (permease) [Candidatus Liber | ||
3dhw_A_ | 217 | D-methionine transport system permease protein MET | 99.97 | |
3d31_C_ | 295 | Sulfate/molybdate ABC transporter, permease protei | 99.95 | |
2onk_C_69-249 | 181 | Molybdate/tungstate ABC transporter, permease prot | 99.89 | |
2r6g_G_73-244 | 172 | Maltose transport system permease protein MALG; AB | 99.85 | |
2r6g_F_269-326_360-453 | 152 | Maltose transport system permease protein MALF; AB | 99.84 | |
3dhw_A_ | 217 | D-methionine transport system permease protein MET | 93.42 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} | Back alignment and structure |
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Probab=99.97 E-value=1.3e-31 Score=192.03 Aligned_cols=207 Identities=19% Similarity=0.286 Sum_probs=173.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999999706------7637999999999998555322222211122333210 Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFF------SDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI 86 (226) Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~------~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~ 86 (226) ..+.+++++++|+.+++.++++++++|+++|+...+. ..+.+........+.++++|.++.+...+...+..+. T Consensus 5 ~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217) T 3dhw_A 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVG 84 (217) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999999999999999987344320189999999999999999999999999986455204 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787889875267999 Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 (226) Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~ 166 (226) ...++.+.++++++...||+.++.|++++++|++++|||+++|+|+||++|||++||++|.+++++.+.+...+++++.+ T Consensus 85 ~~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v~lP~~~p~i~~~~~~~~~~~~~~~~~~ 164 (217) T 3dhw_A 85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164 (217) T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 53018899898899724689899998888615027788860698742142673099769999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 997699999999999832357799999999999999999999999999986213 Q gi|254781113|r 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226) Q Consensus 167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226) +.+|.++....+++....++++...+ ..+++..++...+..+.++++||++|| T Consensus 165 ~~ig~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~l~~~~~rR 217 (217) T 3dhw_A 165 GAVGAGGLGQIGYQYGYIGYNATVMN-TVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217) T ss_dssp CSTTCCHHHHHHHHHHHSSCCTTHHH-HHHHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99987599999999999750189999-999999999999999999999985699 |
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} | Back alignment and structure |
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>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} | Back alignment and structure |
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>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
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>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
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>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} | Back alignment and structure |
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