254781191
hypothetical protein CLIBASIA_05490
GeneID in NCBI database: | 8210216 | Locus tag: | CLIBASIA_05490 |
Protein GI in NCBI database: | 254781191 | Protein Accession: | YP_003065604.1 |
Gene range: | +(1190024, 1190521) | Protein Length: | 165aa |
Gene description: | hypothetical protein | ||
COG prediction: | [L] Site-specific recombinases, DNA invertase Pin homologs | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | Phage protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 165 | hypothetical protein CLIBASIA_05490 [Candidatus Liberib | |||
254780124 | 388 | hypothetical protein CLIBASIA_00015 [Candidatus Li | 2e-34 |
>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Length = 388 | Back alignment |
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Score = 136 bits (343), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 110/165 (66%), Gaps = 2/165 (1%) Query: 1 MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60 +++++CRFCRAK RC AL+ L ++ + +LS+ + + LI++++K ++E Sbjct: 223 VNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMF 282 Query: 61 NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120 L++G+++ Y+L EGRKG+R++ + N+ ++LL LG+EA+ R L +P E EQL K + Sbjct: 283 KRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQ 342 Query: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNH--LKANISEFSVL 163 KVS+ WE+LQ+ ITR DGK VI P D+P N K+ +SEF VL Sbjct: 343 KVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVL 387 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 165 | hypothetical protein CLIBASIA_05490 [Candidatus Liberib | |||
315121963 | 388 | hypothetical protein CKC_01065 [Candidatus Liberibacter | 1 | 8e-32 | |
315122931 | 388 | hypothetical protein CKC_05935 [Candidatus Liberibacter | 1 | 9e-32 | |
254780124 | 388 | hypothetical protein CLIBASIA_00015 [Candidatus Liberib | 1 | 8e-31 | |
317120738 | 388 | hypothetical protein SC2_gp195 [Liberibacter phage SC2] | 1 | 8e-31 | |
45569531 | 418 | hypothetical protein BMP-1p37 [Bordetella phage BMP-1] | 1 | 3e-20 | |
41179398 | 418 | Bbp38 [Bordetella phage BPP-1] Length = 418 | 1 | 3e-20 | |
45580782 | 418 | hypothetical protein BIP-1p37 [Bordetella phage BIP-1] | 1 | 3e-20 | |
15839112 | 425 | hypothetical protein XF2522 [Xylella fastidiosa 9a5c] L | 1 | 7e-19 | |
15837288 | 425 | hypothetical protein XF0686 [Xylella fastidiosa 9a5c] L | 1 | 1e-18 | |
260845236 | 433 | hypothetical protein ECO103_3129 [Escherichia coli O103 | 1 | 8e-18 |
>gi|315121963|ref|YP_004062452.1| hypothetical protein CKC_01065 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 388 | Back alignment and organism information |
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Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 2/165 (1%) Query: 1 MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60 +DE+ACRFCRAK RC AL+ L + LS+ + LPLIE ++K +KEE Sbjct: 223 VDEDACRFCRAKTRCPALSRHVLLETIRDPKSGCEVDLSKAYSSLPLIEQYIKALKEEVF 282 Query: 61 NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120 LS GE++ Y+L EGRKG+RT+ + Q + L LGD+A+ + LLSP E EQ K + Sbjct: 283 KRLSEGEEVKGYQLVEGRKGNRTFKDIEQATEYLTGVLGDKAFKKILLSPKEVEQFRKDQ 342 Query: 121 KVSETTWEQLQKFITRKDGKQVIVPCDL-PVNHL-KANISEFSVL 163 +S WE+LQ+ ITR DGK VI P D+ PV + KA IS+F+ L Sbjct: 343 TLSSDVWEELQELITRGDGKPVIAPRDIPPVPRIQKAEISDFASL 387 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|315122931|ref|YP_004063420.1| hypothetical protein CKC_05935 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 388 | Back alignment and organism information |
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>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Length = 388 | Back alignment and organism information |
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>gi|317120738|gb|ADV02560.1| hypothetical protein SC2_gp195 [Liberibacter phage SC2] Length = 388 | Back alignment and organism information |
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>gi|45569531|ref|NP_996600.1| hypothetical protein BMP-1p37 [Bordetella phage BMP-1] Length = 418 | Back alignment and organism information |
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>gi|41179398|ref|NP_958707.1| Bbp38 [Bordetella phage BPP-1] Length = 418 | Back alignment and organism information |
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>gi|45580782|ref|NP_996648.1| hypothetical protein BIP-1p37 [Bordetella phage BIP-1] Length = 418 | Back alignment and organism information |
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>gi|15839112|ref|NP_299800.1| hypothetical protein XF2522 [Xylella fastidiosa 9a5c] Length = 425 | Back alignment and organism information |
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>gi|15837288|ref|NP_297976.1| hypothetical protein XF0686 [Xylella fastidiosa 9a5c] Length = 425 | Back alignment and organism information |
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>gi|260845236|ref|YP_003223014.1| hypothetical protein ECO103_3129 [Escherichia coli O103:H2 str. 12009] Length = 433 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 165 | hypothetical protein CLIBASIA_05490 [Candidatus Liberib | ||
pfam10926 | 363 | pfam10926, DUF2800, Protein of unknown function (DUF280 | 7e-25 |
>gnl|CDD|151373 pfam10926, DUF2800, Protein of unknown function (DUF2800) | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 165 | hypothetical protein CLIBASIA_05490 [Candidatus Liberib | ||
pfam10926 | 363 | DUF2800 Protein of unknown function (DUF2800). This is | 100.0 |
>pfam10926 DUF2800 Protein of unknown function (DUF2800) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00