254781199
hypothetical protein CLIBASIA_05530
| GeneID in NCBI database: | 8210224 | Locus tag: | CLIBASIA_05530 |
| Protein GI in NCBI database: | 254781199 | Protein Accession: | YP_003065612.1 |
| Gene range: | -(1196268, 1196741) | Protein Length: | 157aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 157 | hypothetical protein CLIBASIA_05530 [Candidatus Liberib | |||
| 254780988 | 151 | hypothetical protein CLIBASIA_04445 [Candidatus Li | 7e-42 |
| >gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62] Length = 151 | Back alignment |
|---|
Score = 160 bits (406), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 15/158 (9%)
Query: 4 SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
SFL G + RF ++F+PS F +++ EY+ K++SIE+D+L+LE+AK S+TQ+DL ++
Sbjct: 3 SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE 58
Query: 64 AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119
+ + P+RLAR++ Q + + K + F ALIRP TT FWII+YPLL+WW V
Sbjct: 59 S-------ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
Query: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
++G DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
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Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 157 | hypothetical protein CLIBASIA_05530 [Candidatus Liberib | |||
| 317120748 | 157 | hypothetical protein SC2_gp250 [Liberibacter phage SC2] | 1 | 2e-69 | |
| 317120705 | 158 | hypothetical protein SC2_gp005 [Liberibacter phage SC2] | 1 | 4e-69 | |
| 315122886 | 158 | hypothetical protein CKC_05710 [Candidatus Liberibacter | 1 | 7e-67 | |
| 315121924 | 158 | hypothetical protein CKC_00870 [Candidatus Liberibacter | 1 | 3e-66 | |
| 315122344 | 125 | hypothetical protein CKC_02980 [Candidatus Liberibacter | 1 | 4e-47 | |
| 315122770 | 124 | hypothetical protein CKC_05125 [Candidatus Liberibacter | 1 | 2e-45 | |
| 315122566 | 130 | hypothetical protein CKC_04090 [Candidatus Liberibacter | 1 | 9e-45 | |
| 254780988 | 151 | hypothetical protein CLIBASIA_04445 [Candidatus Liberib | 1 | 4e-38 | |
| 315121790 | 121 | hypothetical protein CKC_00200 [Candidatus Liberibacter | 1 | 4e-31 | |
| 315122303 | 115 | hypothetical protein CKC_02775 [Candidatus Liberibacter | 1 | 1e-30 |
| >gi|317120748|gb|ADV02570.1| hypothetical protein SC2_gp250 [Liberibacter phage SC2] Length = 157 | Back alignment and organism information |
|---|
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 142/157 (90%)
Query: 1 MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
MIQSFLAGGLFRFLLRFIPS FERIVDVVSEYLTKKQSIEYDK KLE AK DSS QLDLA
Sbjct: 1 MIQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSIEYDKWKLETAKIDSSLQLDLA 60
Query: 61 EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
+IK GIEELK DKPI+LARI+AQ +KSGVKW+D F L+RPLTT FWIIVYP++VWWSVK
Sbjct: 61 DIKYGIEELKADKPIKLARIKAQNIKSGVKWIDSFNTLVRPLTTLFWIIVYPMMVWWSVK 120
Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
EG+F+ PL++LSPF QEIIACILGFW+TDKIVQK++
Sbjct: 121 EGIFDKSPLSILSPFEQEIIACILGFWFTDKIVQKRR 157
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Species: Liberibacter phage SC2 Genus: Family: Podoviridae Order: Caudovirales Class: Phylum: Superkingdom: Viruses |
| >gi|317120705|gb|ADV02527.1| hypothetical protein SC2_gp005 [Liberibacter phage SC2] Length = 158 | Back alignment and organism information |
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| >gi|315122886|ref|YP_004063375.1| hypothetical protein CKC_05710 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 | Back alignment and organism information |
|---|
| >gi|315121924|ref|YP_004062413.1| hypothetical protein CKC_00870 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 | Back alignment and organism information |
|---|
| >gi|315122344|ref|YP_004062833.1| hypothetical protein CKC_02980 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 125 | Back alignment and organism information |
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| >gi|315122770|ref|YP_004063259.1| hypothetical protein CKC_05125 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 124 | Back alignment and organism information |
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| >gi|315122566|ref|YP_004063055.1| hypothetical protein CKC_04090 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 130 | Back alignment and organism information |
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| >gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62] Length = 151 | Back alignment and organism information |
|---|
| >gi|315121790|ref|YP_004062279.1| hypothetical protein CKC_00200 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 121 | Back alignment and organism information |
|---|
| >gi|315122303|ref|YP_004062792.1| hypothetical protein CKC_02775 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 115 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 157 | hypothetical protein CLIBASIA_05530 [Candidatus Liberib | ||
| pfam11351 | 123 | DUF3154 Protein of unknown function (DUF3154). This fam | 97.16 |
| >pfam11351 DUF3154 Protein of unknown function (DUF3154) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 157 | hypothetical protein CLIBASIA_05530 [Candidatus Liberib | ||
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis,plant | 1e-04 |
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 7/35 (20%)
Query: 35 KKQSIEYDKLK--LEMAKNDSSTQLDLAEIKAGIE 67
+KQ+++ KL+ L++ +DS+ LA IKA +E
Sbjct: 18 EKQALK--KLQASLKLYADDSAPA--LA-IKATME 47
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00