254781202

hypothetical protein CLIBASIA_05545

GeneID in NCBI database:	8210227	Locus tag:	CLIBASIA_05545
Protein GI in NCBI database:	254781202	Protein Accession:	YP_003065615.1
Gene range:	-(1199145, 1201739)	Protein Length:	864aa
Gene description:	hypothetical protein
COG prediction:	none
KEGG prediction:	hypothetical protein
SEED prediction:	hypothetical protein
Pathway involved in KEGG:	not defined
Subsystem involved in SEED:	- none -
sequence	sequence profile

Prediction of Local Sequence Properties

Source	Summary	Result

	scaler
NCBI Database	sequence
PSIPRED	secondary structure
SSPRO	secondary structure
DISEMBL	coil and loop
DISEMBL	flexible loop
SEG	low complexity
DISOPRED	disordered
DISEMBL	missing residues
DISPRO	disordered
TMHMM	none TM-Helix
TOPPRED	3 TM-Helix
HMMTOP	none TM-Helix
MEMSAT	none TM-Helix
MEMSAT_SVM	none TM-Helix
PHOBIUS	none TM-Helix
SignalP_HMM	no
SignalP_NN	no
COILS	coiled coil
70% MSA	conservation map
90% MSA	conservation map

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860----

MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKKGIELFQNMDEGLPHRLPFPFGED

ccHHHHHHHHHHHcccccHHHHHHHHHHHHHEEEEcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHccHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHccccccEEEEcccHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEEEEEEEEHHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc

ccHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccEEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHccHHHHcccccccHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEEEccccccHHHHccccHEccccccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccc

MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDrvqagvygkSQALFNKLFFkagsaevpLEMKIKAAETKVLSKFNEYaevgsknlgftldkqfgldvfdemkgkktqNEQASRLVKQYFETQRELHSQAHeagldykffenripqpmsvdklratkkddFVRSMLdwldlsrykdidgtplsrsEIASFVGEVFAErvrstsfkdpsipssevgvkrEFERVFHFKDSQAHMDYMEhfgvstnvNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSaagasmlgqhpigalledgfiSRQMlsrvgidkEAIQRINKMPLKERMELLSDVGLYAEGVVahgrnmmegsdafQIGHKLHSKMhkwsgaeyldkkrisSHALIVYNQIgrmtdtyaslkdlkadprldpSIKAFFKQLDDTDFTVIKRakamsspdgylyartpstiknlkdadlRDLARMSDKIAYHRKklknsktlspEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTsvrgamhtslfdrqrlglltykrgtRAGEALRMFQqftttptgmflnildlsnsakmpkgasMALNHVWIQYSATMALAGIGVASIKALlrgedpslpeviydgtlangallpYMDRLTKLVSKgdraaiggllgpvpsmVTNLTSSAVELAtkdnenskVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEelnpgyldrqqskKKKKGIELFQNmdeglphrlpfpfged

mkpeciqvlnkaagrelskkelrrledGIVRAyvsldgkglskAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAETKVLSKFNEYAevgsknlgftLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQpmsvdklratkkDDFVrsmldwldlsrykdidgtplsrSEIASFVGEVFAErvrstsfkdpsipssevgvkreFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIAndqeasagnkvlkdwlgrNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFfkqlddtdfTVIKrakamsspdgylyartpstiknlkdadlrDLARMSDKIAYHRKklknsktlspeqRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAmhtslfdrqrlglLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGgllgpvpsMVTNLTSSAVElatkdnenskvnATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKKGIELFQnmdeglphrlpfpfged

***ECIQ*LNKAAGR*LS*KELRRLEDGIVRAYVS**********RYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQAL************************KVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDE**************VKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKD****PLSRSEIASFVGEVFAER************************VFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTI***************************AMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQR*********MELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPG****************FQNMDEGLP**********

MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLK***************QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKKGIELFQNMDEGLPHRLPFPFGED

*KPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKKGIELFQNMDEGLPHRLP******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQxxxxxxxxxxxxxxxxxxxxxKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKKGIELFQNMDEGLPHRLPFPFGED

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

Identity	Alignment graph	Length	Definition	Round	E-value
Target		864	hypothetical protein CLIBASIA_05545 [Candidatus Liberib
309702799		825	hypothetical phage protein [Escherichia coli ETEC H1040	1	7e-38
332344341		824	conserved hypothetical protein [Escherichia coli UMNK88	1	5e-36
298381705		824	conserved hypothetical protein [Escherichia coli FVEC13	1	1e-35
300898440		824	conserved hypothetical protein [Escherichia coli MS 198	1	1e-35
331648163		824	hypothetical protein ECIG_04089 [Escherichia coli M605]	1	1e-35
304398390		921	hypothetical protein PanABDRAFT_3525 [Pantoea sp. aB] L	1	4e-30
85059173		824	hypothetical protein SG1195 [Sodalis glossinidius str.	1	2e-29
330007168		924	hypothetical protein HMPREF9538_03599 [Klebsiella sp. M	1	9e-29
30387396		918	hypothetical protein epsilon15p17 [Enterobacteria phage	1	2e-28
215487808		824	hypothetical protein E2348C_2741 [Escherichia coli O127	1	2e-27

>gi\|309702799\|emb\|CBJ02130.1\| hypothetical phage protein [Escherichia coli ETEC H10407] Length = 825	Back alignment and organism information

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 209/874 (23%), Positives = 357/874 (40%), Gaps = 98/874 (11%)

Query: 1   MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL------DGKGLSKAERYRLAGLKA 54
           M+ ECIQ + +AA R L+ +E++ +ED I R   SL        + L+ AER R AG  A
Sbjct: 2   MRQECIQAVQQAAKRTLTAREIQDIEDRIYRNMRSLARDDPASWRQLTDAERLRRAGQLA 61

Query: 55  EEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAG--SAEVPL 112
            ++ Q+E              R +L + ++  Q G  GK  AL   + F A   S  + +
Sbjct: 62  SDELQREAALKKRRVALTISARQRLDNFINNYQ-GADGKLGALNRTIAFSADGKSNFLSV 120

Query: 113 EMKIKAAETKVLSKFNE-YAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQY 171
           E + KA     LS+  E +  V  +  G   D+    D+  EM+G+ T N +A +  K +
Sbjct: 121 ESRTKATRDYALSQLQEAFEAVDPRFFGLFEDEAGVRDLVFEMRGQNTGNAKARKGAKAW 180

Query: 172 FETQRELHSQAHEAGLDYKFFENR-IPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDID 230
            E    L  + ++AG D  + EN  IPQ  S++K+ A  KD +V  ++  LD   Y   D
Sbjct: 181 GEVTELLRRRFNDAGGDIGYLENWGIPQHHSMEKVGAVTKDKWVSDVIGKLDRKYYTRSD 240

Query: 231 GTPLSRSEIASFVGEVFAERVRS--TSFKDPSIPSSEVGVKR-EFERVFHFKDSQAHMDY 287
           G  +S SE+ +F+GE +            D  +  S     R    R  HFKD+ +++ Y
Sbjct: 241 GQLMSDSELTAFLGEAYNTIATGGLNKLTDTGMRISGARANRGNASRQIHFKDADSYLQY 300

Query: 288 MEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEA--SAGNK 345
            + +G   ++  I+   L  +SKDI +    GPN D   + ++ Q  A    A  S   K
Sbjct: 301 QQLYG-DRSLWEIMVGHLEGISKDIALVETYGPNPDHVFRSLLDQVKAETATANPSKTGK 359

Query: 346 VLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGAL 405
           V        +L    E +     +    + V N   A W   +R+   AS LG   + + 
Sbjct: 360 V-------ERLANNTENLYNF--ISGKTQPVANPHIARWSDNIRNWLVASRLGSALLSSF 410

Query: 406 LEDG--FISRQMLSRVGIDKEAIQRINKMPLKERME--LLSDVGLYAEGVVAHGRNMMEG 461
            + G  ++S + ++ + +++    ++  M    R E  L    GL  E ++         
Sbjct: 411 SDLGTMYLSAK-VTNLPMNQLFRNQLEAMDPTNRTELALARRAGLAMESLLGSVNRWAMD 469

Query: 462 SDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDL-KADPRLD 520
           +    +     + + + SG          ++ + +   +G +      L+ L  +D R+ 
Sbjct: 470 NMGPSVSRWAATAVMRASGLTAWSDAHKRAYGVTMMGSLGEVVSRTPDLRSLDDSDFRIL 529

Query: 521 PSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYH 580
            S     K + DTD++V K A+     +G     TP +I  + D+ ++ L          
Sbjct: 530 KS-----KGITDTDWSVWKLAQQEDWGNGNNTMLTPESIMRIPDSAVKHLG--------- 575

Query: 581 RKKLKNSKTLSPEQ-RQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHT 639
                      PE+ + E  ++L     +E+++       +    V   +Q         
Sbjct: 576 ----------EPERVKFEAMRKLLGAVTEEVDMAVITPGAREQMFVGSGLQ--------- 616

Query: 640 SLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHV 699
                         RGT  GE  R    F + P  + +     S +  MP     A    
Sbjct: 617 --------------RGTWKGELTRSVFLFKSFPISVVMR--HWSRAMGMPSAGGRAAYIA 660

Query: 700 WIQYSATMALAGIGVAS--IKALLRGEDPS------LPEVIYDGTLANGALLPYMDRLTK 751
               S TM    +G  S  I  L+ G +P       + +   +  L  G    Y D L  
Sbjct: 661 TFLASTTM----LGALSMQITDLINGRNPKEMTGDHMVKFWINAFLKGGGAGLYGDFLFS 716

Query: 752 LVSKGDRAAIGGLLGPVPSMVTNLTSSA----VELATKDNENSKVNATKAIRKTLPFMNM 807
             ++    A+  +LGPV  +V ++   A    +      NE +  +  K  +  +P  N+
Sbjct: 717 DHTRYGSGALASMLGPVAGLVDDVVKIAQGIPLNAVEGKNEQTGGDLVKLGKGLMPGANL 776

Query: 808 WYLKNSFDHLILNQILEELNPGYLDRQQSKKKKK 841
           WYLK + DH+I NQ+ E  +PGYL + + + KK+
Sbjct: 777 WYLKAALDHMIFNQMQEYFSPGYLRKMEQRSKKE 810

Species: Escherichia coli
Genus: Escherichia
Family: Enterobacteriaceae
Order: Enterobacteriales
Class: Gammaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

>gi\|332344341\|gb\|AEE57675.1\| conserved hypothetical protein [Escherichia coli UMNK88] Length = 824	Back alignment and organism information

>gi\|298381705\|ref\|ZP_06991304.1\| conserved hypothetical protein [Escherichia coli FVEC1302] Length = 824	Back alignment and organism information

>gi\|300898440\|ref\|ZP_07116781.1\| conserved hypothetical protein [Escherichia coli MS 198-1] Length = 824	Back alignment and organism information

>gi\|331648163\|ref\|ZP_08349253.1\| hypothetical protein ECIG_04089 [Escherichia coli M605] Length = 824	Back alignment and organism information

>gi\|304398390\|ref\|ZP_07380264.1\| hypothetical protein PanABDRAFT_3525 [Pantoea sp. aB] Length = 921	Back alignment and organism information

>gi\|85059173\|ref\|YP_454875.1\| hypothetical protein SG1195 [Sodalis glossinidius str. 'morsitans'] Length = 824	Back alignment and organism information

>gi\|330007168\|ref\|ZP_08305910.1\| hypothetical protein HMPREF9538_03599 [Klebsiella sp. MS 92-3] Length = 924	Back alignment and organism information

>gi\|30387396\|ref\|NP_848225.1\| hypothetical protein epsilon15p17 [Enterobacteria phage epsilon15] Length = 918	Back alignment and organism information

>gi\|215487808\|ref\|YP_002330239.1\| hypothetical protein E2348C_2741 [Escherichia coli O127:H6 str. E2348/69] Length = 824	Back alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

Identity	Alignment graph	Length	Definition	E-value
Target		864	hypothetical protein CLIBASIA_05545 [Candidatus Liberib
PHA01972		828	PHA01972, PHA01972, structural protein	1e-54

>gnl\|CDD\|177329 PHA01972, PHA01972, structural protein	Back alignment and domain information

 Score =  210 bits (536), Expect = 1e-54
 Identities = 189/916 (20%), Positives = 332/916 (36%), Gaps = 141/916 (15%)

Query: 1   MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL------DGKGLSKAER-YRLAGLK 53
           M  +C++ + +AAGR+L+  E++ +ED I  A  S+        K  S A+R Y+     
Sbjct: 1   MPQKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGWKEESIAKRFYKTDADL 60

Query: 54  AEEDFQKELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSA----- 108
           A ++   + I+          K+ +      ++   +          L   +        
Sbjct: 61  ARQELVHDAIKKKKRVALAIAKQAEA---TKKINEVLTADKDPAAALLGMLSRDPNEEAK 117

Query: 109 EVPLEMKIKAAETKVLSKFNEYAEVG---------SKNLG---FTLDKQFGL-DVFDEMK 155
            + +E +I A      +K +++                 G   F   +Q  L D+  E+ 
Sbjct: 118 FLSVEQRINATRDVSKAKISDFMAALDPTTRQIFAGIATGERRFDKAQQRLLDDIVHELY 177

Query: 156 GKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFEN-RIPQPMSVDKLRATKKDDFV 214
           G++T N  A +  K + +   +L ++ ++AG D    ++ R+PQ  +  K+     D +V
Sbjct: 178 GRQTGNADAKKAAKGWKKVTEDLRARFNDAGGDIGELDDWRLPQKHNRMKISKAGADAWV 237

Query: 215 RSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKR---- 270
             + D LD S+Y   DG P++ +E+   +  V+      T   +   P S+ G       
Sbjct: 238 DDVWDLLDRSKYVKKDGKPMNDAELREALYSVYNTIA--TDGMNKIDPGSKTGSGARANR 295

Query: 271 -EFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQM 329
              ERV HFKD+ +H+ Y   FG  T+V   +   L  +S+DI +    GP+ D     +
Sbjct: 296 GSAERVIHFKDADSHLQYQREFG-DTSVYASMVGHLDGMSRDIGLVETFGPDPDRNFNTL 354

Query: 330 IVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWE-VMRYGETVENTGWANWMAGL 388
           +          S             +     + +   +  +M Y    EN  W   +AGL
Sbjct: 355 LDAVKTKKGTTS------------RQPTGAMKMVEPTFNMLMGYNMVEENPVWGRRVAGL 402

Query: 389 RSAAGASMLGQHPIGALLEDGFISRQM----LSRVGIDKEAIQRINKMPLKERMELLSDV 444
           R+   AS LG   + AL + G +S       +    + +  +  +     K       D 
Sbjct: 403 RNLWTASKLGAAVLSALSDSGTMSMAASYNAMPPARLLRNMLSEMMP-GSKSEASRAQDF 461

Query: 445 GLYAEGVVAHGRNMMEGSD-AFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRM 503
           GL AE  +    N     +        L   + K SG         ++    +   +G  
Sbjct: 462 GLGAES-LLDRVNRWGTDNLGGHRSRNLAEAVMKVSGLTAWTDAARAAFQFEMMTALGEA 520

Query: 504 TDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLK 563
                      AD             L ++D  ++ R K ++  D  + A  P       
Sbjct: 521 -----------ADSDWS--------DLPESDRRILGR-KGITESDWAIIAAAP------- 553

Query: 564 DADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQL-ADLERKEINILKDKVSNKMH 622
                            R     +K L+P+    + + + A+ + K + ++  +    M 
Sbjct: 554 -----------------RTNYGGAKMLTPDAIYAVPRNMDAEAQTKLLGMVDGETM--MA 594

Query: 623 ALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDL 682
               D    ++                   K GT  GE  R F  F + P    +     
Sbjct: 595 VPTPDARTRAIMAG--------------GTKSGTFGGELHRSFFLFKSFPIATIMR---H 637

Query: 683 SNSAKMPKGASMALNHVWIQYSATM----ALAGIGVASIKALLRGEDPSLPEVIYDGTLA 738
              A   KG   A +   + Y+A M     L G G    K LL G+D   P  + D    
Sbjct: 638 WRRAFTGKGYPGAFDR--MAYAAIMVASTTLLGAGSIQAKDLLNGKD---PRSMTDPKFW 692

Query: 739 NGALLP------YMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLT----SSAVELATKDNE 788
             ALL       Y D L    +         + GPV S    LT     +  + A    E
Sbjct: 693 IEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIGGPVLSYGDQLTKWVAMNPQDAAQGKAE 752

Query: 789 NSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKK-GIELFQ 847
           ++  +  K   +  PF N+WY K + D LI++Q+ E  +PGY  +Q ++ +++     + 
Sbjct: 753 SAGADLLKFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRREFNQTYWW 812

Query: 848 NMDEGLPHRLPFPFGE 863
           +   G P R+P  F  
Sbjct: 813 SPGIGTPQRIPSLFEA 828

Length = 828

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

Identity	Alignment graph	Length	Definition	Probability
Target		864	hypothetical protein CLIBASIA_05545 [Candidatus Liberib
PHA01972		828	structural protein	100.0
PHA00368		1316	internal virion protein D	98.01
PHA02006		1337	virion protein	97.92

>PHA01972 structural protein	Back alignment and domain information

Probab=100.00  E-value=0  Score=1566.01  Aligned_cols=788  Identities=22%  Similarity=0.288  Sum_probs=715.8

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             915899999987457877899999999999999998------661999799999999999-9999999999999999999
Q gi|254781202|r    1 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL------DGKGLSKAERYRLAGLKA-EEDFQKELIRSVNDAIDEA   73 (864)
Q Consensus         1 mk~~Ci~~V~~algr~lsa~E~~~i~d~i~~~~r~~------~~~~ls~ae~~~~AA~~a-~~~~~~e~~~~~~~~~~~~   73 (864)
T Consensus         1 M~~~C~~aV~~AaGR~Lsa~E~~~iedri~~~mr~~ar~d~~~w~~ls~aer~~~~a~e~a~~~~~~e~~~~r~r~~~~i   80 (828)
T PHA01972          1 MPQKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGWKEESIAKRFYKTDADLARQELVHDAIKKKKRVALAI   80 (828)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93789999999866877789997799999999999985295233337999999988999988999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf             999999998541356641078999987632100--2376699999999999999999998520001456-----------
Q gi|254781202|r   74 YKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAG--SAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGF-----------  140 (864)
Q Consensus        74 ~~~~~l~~~l~~~~~~~~~~~~al~~~~~~~~~--~~~~sV~~~~~a~~~~~~~~l~~~~~~~~~~~~~-----------  140 (864)
T Consensus        81 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (828)
T PHA01972         81 AKQAEATKKINEVLTADKDPAAALLGMLSRDPNEEAKFLSVEQRINATRDVSKAKISDFMAALDPTTRQIFAGIATGERR  160 (828)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHH
T ss_conf             99999999987431478555789866550275431002108888878999998899999985111344331043303443


Q ss_pred             --HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC-CCCCCCHHHHHHCCHHHHHHHH
Q ss_conf             --5418889999999848888998999999999999999999998617984002681-4541687999513689899999
Q gi|254781202|r  141 --TLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENR-IPQPMSVDKLRATKKDDFVRSM  217 (864)
Q Consensus       141 --~~dka~~~~~~~e~~g~~tgn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~-~pq~hd~~~i~~a~~~~W~~~i  217 (864)
T Consensus       161 f~~~~~~~~~dli~E~~g~~Tgn~~Ak~~A~~~~~~~e~~R~rfN~aGg~Ig~ldd~~~pq~Hd~~ki~~ag~~~W~~~i  240 (828)
T PHA01972        161 FDKAQQRLLDDIVHELYGRQTGNADAKKAAKGWKKVTEDLRARFNDAGGDIGELDDWRLPQKHNRMKISKAGADAWVDDV  240 (828)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf             21445899999999983788899999999999999999999999873798543558899976789999733689999999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             97520875117568848989999998876323311776566875---213543114576178840967899999960887
Q gi|254781202|r  218 LDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSI---PSSEVGVKREFERVFHFKDSQAHMDYMEHFGVS  294 (864)
Q Consensus       218 ~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~---~~~~~~~~~~~~R~LhFKDa~sw~~Y~~~fG~~  294 (864)
T Consensus       241 ~~~LD~~~~v~~~G~~~~~~el~~~L~~VY~ti~T~G~nk~~~~~~~G~~~~anr~s~~RvLhFKDa~sw~~Yq~~fG-~  319 (828)
T PHA01972        241 WDLLDRSKYVKKDGKPMNDAELREALYSVYNTIATDGMNKIDPGSKTGSGARANRGSAERVIHFKDADSHLQYQREFG-D  319 (828)
T ss_pred             HHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHC-C
T ss_conf             865079986266789799899999999998520248877678521122355521022310256457688999999867-9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf             7689999988874455677999857996899999999999861110000012200001488998999999999762-578
Q gi|254781202|r  295 TNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVM-RYG  373 (864)
Q Consensus       295 ~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  373 (864)
T Consensus       320 ~~~~~~m~~hl~~msrdialme~lGpNP~~~f~~l~d~~~~~~~~~~------------~~~~g~~~~~~~m~~~v~G~~  387 (828)
T PHA01972        320 TSVYASMVGHLDGMSRDIGLVETFGPDPDRNFNTLLDAVKTKKGTTS------------RQPTGAMKMVEPTFNMLMGYN  387 (828)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHHCCC
T ss_conf             98899999989877678999998399857899999999986404345------------225779999999999971878


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Q ss_conf             767538999999899999999875224566412538999850-1245403899999641380--5499999996679989
Q gi|254781202|r  374 ETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQM-LSRVGIDKEAIQRINKMPL--KERMELLSDVGLYAEG  450 (864)
Q Consensus       374 ~~p~n~~~a~~~a~lR~~~~~akLGgA~ISA~tD~~~i~~t~-~~~~~~~~~~~~~l~~~~~--~d~~~~a~~lGl~~E~  450 (864)
T Consensus       388 ~~~~n~~~An~~aglR~~~taskLG~A~lSa~tD~~~~~~~a~y~gl~~~~~~~~~l~~l~~~ske~~~~a~~~GL~aE~  467 (828)
T PHA01972        388 MVEENPVWGRRVAGLRNLWTASKLGAAVLSALSDSGTMSMAASYNAMPPARLLRNMLSEMMPGSKSEASRAQDFGLGAES  467 (828)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             77655999999987999999998621255440359999999986388889999999998575767899999970147888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--
Q ss_conf             999999740266640367999989998852437888657676999999999999763002114773201067899861--
Q gi|254781202|r  451 VVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK--  528 (864)
Q Consensus       451 ~~~~~~r~~~~~~~~~~~~~~a~~~~r~SgL~~wT~~~k~a~~~~~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~--  528 (864)
T Consensus       468 ~~~~~~R~~~d~~~~~~~~~~a~~~mR~SGLs~wT~a~k~af~~~m~~~lg~~--------a~~~~~dL~~~drrvL~~~  539 (828)
T PHA01972        468 LLDRVNRWGTDNLGGHRSRNLAEAVMKVSGLTAWTDAARAAFQFEMMTALGEA--------ADSDWSDLPESDRRILGRK  539 (828)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHC
T ss_conf             98999986066643078899999999984408988989999999999999876--------1488444798999999877


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             78988999998412111356664100523320144577544310002233332000112345702456666655421145
Q gi|254781202|r  529 QLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERK  608 (864)
Q Consensus       529 GI~e~dW~i~r~a~~~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  608 (864)
T Consensus       540 GIte~DW~i~~~~~~~~~~g~~--~ltPd~i~~ip~~~------------------------------------------  575 (828)
T PHA01972        540 GITESDWAIIAAAPRTNYGGAK--MLTPDAIYAVPRNM------------------------------------------  575 (828)
T ss_pred             CCCHHHHHHHHCCCCCCCCCCC--CCCHHHHHHCCHHH------------------------------------------
T ss_conf             9986779999708860689987--56889887546889------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77886568899999999986530111145665432210002455787556789999987764299999999999874224
Q gi|254781202|r  609 EINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKM  688 (864)
Q Consensus       609 ~~~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~  688 (864)
T Consensus       576 -----~~ela~KL~g~i~de~~~AV----~tp~~r~rai~~~g~q~GT~~GE~~Rs~~qFKSFpia~~~~~~~R~~~~~G  646 (828)
T PHA01972        576 -----DAEAQTKLLGMVDGETMMAV----PTPDARTRAIMAGGTKSGTFGGELHRSFFLFKSFPIATIMRHWRRAFTGKG  646 (828)
T ss_pred             -----HHHHHHHHHHHHHCCCCEEC----CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             -----99999999999851121101----588536789882788898488999999999841489999999999986068


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf             3311345677899999999999999999999963899992---7999999985053067788760577863035777740
Q gi|254781202|r  689 PKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSL---PEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLL  765 (864)
Q Consensus       689 ~~~~~~~~~~~~a~~~~~~t~~G~~~~q~k~~l~Grdp~~---~~~~~~a~~~gGg~gi~gd~l~~~~~r~g~~~~~~~~  765 (864)
T Consensus       647 ~~~~~~-~~~y~a~l~~~tTl~G~~s~q~K~ll~GrdPr~~~~~~fw~~a~lqGGGlGi~GDfL~~~~~r~G~~~~~~~a  725 (828)
T PHA01972        647 YPGAFD-RMAYAAIMVASTTLLGAGSIQAKDLLNGKDPRSMTDPKFWIEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIG  725 (828)
T ss_pred             CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf             886046-7889999999999999999999999779999999862499999973687125799987653143510788862


Q ss_pred             CHHHHHHHHHHHHHHH----HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             4015558899999986----402676542258999997318774489999999999999999870812479999999874
Q gi|254781202|r  766 GPVPSMVTNLTSSAVE----LATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKK  841 (864)
Q Consensus       766 GP~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~P~~nLwy~k~a~d~li~~~~~e~~~Pgy~~r~~~r~~~~  841 (864)
T Consensus       726 GP~~s~~~~l~~l~~~~~~~a~~G~~~~~g~d~~~~~k~~tP~~NLWy~k~a~d~Li~dqlqe~~~PGy~~R~~~R~~k~  805 (828)
T PHA01972        726 GPVLSYGDQLTKWVAMNPQDAAQGKAESAGADLLKFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRRE  805 (828)
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             86056799999986213888856995034899999998569606699999999999999999883986589999999998


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -7443458643587679998778
Q gi|254781202|r  842 -GIELFQNMDEGLPHRLPFPFGE  863 (864)
Q Consensus       842 -~~~~~w~p~~~~p~r~p~~~~~  863 (864)
T Consensus       806 ~~q~ywW~Pg~~~P~r~p~~~~~  828 (828)
T PHA01972        806 FNQTYWWSPGIGTPQRIPSLFEA  828 (828)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             18813207999886668886769

>PHA00368 internal virion protein D	Back alignment and domain information

Probab=98.01  E-value=0.0019  Score=43.79  Aligned_cols=463  Identities=14%  Similarity=0.109  Sum_probs=212.7

Q ss_pred             CC-CCCCCCCHHH----HH---------HCCHHHHHHHHHHHHH----HHHHCCC-CCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             68-1454168799----95---------1368989999997520----8751175-688489899999988763233117
Q gi|254781202|r  193 EN-RIPQPMSVDK----LR---------ATKKDDFVRSMLDWLD----LSRYKDI-DGTPLSRSEIASFVGEVFAERVRS  253 (864)
Q Consensus       193 ~~-~~pq~hd~~~----i~---------~a~~~~W~~~i~~~lD----~~~~~~~-~G~~~~~~~~~~~L~~vy~~i~t~  253 (864)
T Consensus       657 kGtYVP~VYdr~aK~l~~~~~Gg~dgLQeaI~~SWltSY~sRpeVKaRvDe~lkE~~g~-~v~evt~e~VekyA~dKAYG  735 (1316)
T PHA00368        657 KGTYVPHVYDRAAKALYIQRFGGPDGLQEAIAKSWLTSYRSRPEVKARVDEYLKELLGI-DVKEVTPEMVEKYAMDKAYG  735 (1316)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf             77547654527999999998078688999999999887302446899999999987363-41667699999986411116


Q ss_pred             CCCCCCCC----------CHHHHHHC-------CCCCEE-EEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             76566875----------21354311-------457617-8840967899999960887768999998887445567799
Q gi|254781202|r  254 TSFKDPSI----------PSSEVGVK-------REFERV-FHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIA  315 (864)
Q Consensus       254 g~~~~~~~----------~~~~~~~~-------~~~~R~-LhFKDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm  315 (864)
T Consensus       736 IShTd~F~~Ssvieeni~glvGiEnN~FLEARNLFDSDm~V~lpdGqtFSV-NDLR--~~Dm~~impaYDRRVnGDIaIM  812 (1316)
T PHA00368        736 ISHTDQFTRSSVIEENIEGLVGIENNSFLEARNLFDSDMSVTLPDGQTFSV-NDLR--DFDMKKIMPAYDRRVNGDIAIM  812 (1316)
T ss_pred             CCCHHCCCCCHHHHCCCHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCC-CHHH--HHHHHHHHHHHCCCCCCCEEEE
T ss_conf             661210341025541321331445540777764125677326789982002-3266--5035541134315447744552


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             98579968999999999998611100000122000014889989999999997625787-67538999999899999999
Q gi|254781202|r  316 RELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGE-TVENTGWANWMAGLRSAAGA  394 (864)
Q Consensus       316 ~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~p~n~~~a~~~a~lR~~~~~  394 (864)
T Consensus       813 ggTGktT----~~LkdeI~aL~~~~~~~----------g~~kgeVeALkdtvKILTGRARRn~D~af~t~~Rsl~DlsFf  878 (1316)
T PHA00368        813 GGTGKTT----KELKDEILALDKKAEGD----------GKLKGEVEALKDTVKILTGRARRNPDTAFETALRSLNDLSFF  878 (1316)
T ss_pred             CCCCCCH----HHHHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             0688567----99999999987422678----------763113899998899871633368501789998776535566


Q ss_pred             HHHHHHHHHHHCCHHHHHHH-----HCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HH----HHHHHHHHCCC
Q ss_conf             87522456641253899985-----01245403899999641380549999999667998---99----99999740266
Q gi|254781202|r  395 SMLGQHPIGALLEDGFISRQ-----MLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAE---GV----VAHGRNMMEGS  462 (864)
Q Consensus       395 akLGgA~ISA~tD~~~i~~t-----~~~~~~~~~~~~~~l~~~~~~d~~~~a~~lGl~~E---~~----~~~~~r~~~~~  462 (864)
T Consensus       879 aKNAYMG~qNiTEIaGMlakGnvral~hGvP~lrd~~~r~kpv~~~ElkEL-H~~~FGkEld~lIRP~r~div~Rlre~t  957 (1316)
T PHA00368        879 AKNAYMGAQNITEIAGMLAKGNVRALLHGVPILRDLAFRNKPVSASELKEL-HGMLFGKELDQLIRPSRQDIVQRLRETT  957 (1316)
T ss_pred             HHHHHHCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             544330302688998788434188887276278888760787888999999-9877647788760854788999998637


Q ss_pred             C-CCHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--CCCH
Q ss_conf             6-4036799998---9998852437888657676999----999999999763002114773201067899861--7898
Q gi|254781202|r  463 D-AFQIGHKLHS---KMHKWSGAEYLDKKRISSHALI----VYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK--QLDD  532 (864)
Q Consensus       463 ~-~~~~~~~~a~---~~~r~SgL~~wT~~~k~a~~~~----~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~--GI~e  532 (864)
T Consensus       958 d~~~~~A~vvgt~ky~TqElAARsP~Tk~LngTtNYilDaaRqG~lgDvv~~al~gk-~~r~~~~-----~~Lk~aSis~ 1031 (1316)
T PHA00368        958 DTGPAVANVVGTLKYGTQELAARSPWTKLLNGTTNYILDAARQGVLGDVVSAALTGK-TTRWFKE-----GFLKSASISP 1031 (1316)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----CHHHHCCCCH
T ss_conf             875789988755211136554138288886263488887774005999998875388-7521332-----3022147799


Q ss_pred             HHHHHHHHHCC--CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999984121--1135666410052332014457754431000223333200011234570245666665542114577
Q gi|254781202|r  533 TDFTVIKRAKA--MSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEI  610 (864)
Q Consensus       533 ~dW~i~r~a~~--~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  610 (864)
T Consensus      1032 EQw~gIkqlire~~trg~dG--------kftikDk~A------------fa~--------DPRa-MDLW----------- 1071 (1316)
T PHA00368       1032 EQWEGIKQLIREHVTRGEDG--------KFTIKDKQA------------FAS--------DPRA-MDLW----------- 1071 (1316)
T ss_pred             HHHHHHHHHHHHHCCCCCCC--------CEEECCHHH------------HCC--------CCHH-HHHH-----------
T ss_conf             99864999999844448898--------456457676------------515--------8336-6888-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88656889999999998653011114566543221000245578755678999998776429999999999987422433
Q gi|254781202|r  611 NILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPK  690 (864)
Q Consensus       611 ~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~~~  690 (864)
T Consensus      1072 ---------Rl~DKvADEtmL-----------RPhKvS~QD---skA~Ga~~km~lQFKsF~iKSlN~rfiRs~ye~tKN 1128 (1316)
T PHA00368       1072 ---------RLADKVADETML-----------RPHKVSLQD---SKAFGALVKMVLQFKSFVIKSLNSRFIRSFYEATKN 1128 (1316)
T ss_pred             ---------HHHHHHHHHHHC-----------CCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---------763133045523-----------744253101---244415789988777667774023889999875026


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCC----------CCHHHH-HHHHHH----HCCHHHHH
Q ss_conf             113456778999999999999-999999999638999----------927999-999985----05306778
Q gi|254781202|r  691 GASMALNHVWIQYSATMALAG-IGVASIKALLRGEDP----------SLPEVI-YDGTLA----NGALLPYM  746 (864)
Q Consensus       691 ~~~~~~~~~~a~~~~~~t~~G-~~~~q~k~~l~Grdp----------~~~~~~-~~a~~~----gGg~gi~g  746 (864)
T Consensus      1129 ~RaiD---~Alt~viS~GlAggyyvaqahvkA~glpe~qrkeyLk~Aldp~MiayAa~SRSShlGaPL~ian 1197 (1316)
T PHA00368       1129 NRAID---AALTIVISMGLAGGYYVAQAHVKAYGLPEEQRKEYLKNALDPTMIAYAALSRSSHLGAPLSIAN 1197 (1316)
T ss_pred             CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             43899---9999999831346889999999971598677889998548878889987612123477446999

>PHA02006 virion protein	Back alignment and domain information

Probab=97.92  E-value=0.0028  Score=42.59  Aligned_cols=534  Identities=16%  Similarity=0.128  Sum_probs=260.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHCCCCCCCCCHHHHHHCCH---HHHHHHH-------HHHHHHH
Q ss_conf             899899999999999999999999861798----4002681454168799951368---9899999-------9752087
Q gi|254781202|r  159 TQNEQASRLVKQYFETQRELHSQAHEAGLD----YKFFENRIPQPMSVDKLRATKK---DDFVRSM-------LDWLDLS  224 (864)
Q Consensus       159 tgn~~a~~~A~~~~~~~e~~r~~~N~aG~~----Igkl~~~~pq~hd~~~i~~a~~---~~W~~~i-------~~~lD~~  224 (864)
T Consensus       716 n~~p~i~~lad~sd~~hg~~g~~ar~agvrGFEDFtpRPGYFHRsWn~sk~~a~e~a~~g~vr~llsEsV~RGi~gldk~  795 (1337)
T PHA02006        716 NLPPTIKALADRSDEIHGLMGQRAREAGVRGFEDFAPRPGYFHRSWNWSKMAQMDEAAPGLARRAISEAVFRGIPGLDRA  795 (1337)
T ss_pred             CCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             98858998751116777788888887054542105899871120034899999987554689999999998146676844


Q ss_pred             HH------------CCCCCC---------CCCHHHHHHHHHHHHHHHHC--CCC----CCCCCCCHHHHHHCCCCCEE--
Q ss_conf             51------------175688---------48989999998876323311--776----56687521354311457617--
Q gi|254781202|r  225 RY------------KDIDGT---------PLSRSEIASFVGEVFAERVR--STS----FKDPSIPSSEVGVKREFERV--  275 (864)
Q Consensus       225 ~~------------~~~~G~---------~~~~~~~~~~L~~vy~~i~t--~g~----~~~~~~~~~~~~~~~~~~R~--  275 (864)
T Consensus       796 eAd~Ia~AivqR~rdkAsG~RseFMGAlGkaDT~fiR~~LeeA~vs~a~i~SIMgkIEQk~sdqGts----KYgK~RL~L  871 (1337)
T PHA02006        796 DADTIAQAIVQRARDRATGIRSEFMGAMGVADTAFIRQALEEANVSQAKFDSIMAKIEQKQSDQGTV----KYGKGRLSL  871 (1337)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCE
T ss_conf             5507999999998652035668776530443089999999974863452999999997612012523----346653330


Q ss_pred             ---EEE-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf             ---884-0967899999960887768999998887445567799985799689999999999986111000001220000
Q gi|254781202|r  276 ---FHF-KDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWL  351 (864)
Q Consensus       276 ---LhF-KDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~  351 (864)
T Consensus       872 DMta~I~~dGtv-yrV~DlI--DrDLdRlmENY~~smsGRSALa~AG~~g-Da~ieAf~r~Y~~~~ak------L~----  937 (1337)
T PHA02006        872 DMTAEINHNGTV-YRVQDLI--DRDLDRLMENYAGSMSGRSALARAGMPG-DSEIEAFIREYQREAAH------LG----  937 (1337)
T ss_pred             EEEEEECCCCEE-EEHHHHH--HHHHHHHHHHHCCCCCCHHHHHHCCCCC-CHHHHHHHHHHHHHHHH------CC----
T ss_conf             247897349748-8738756--4039999997433541177897658987-26699999999999863------58----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             148899899999999976257-8-76753899999989999999987522456641253899985012454038999996
Q gi|254781202|r  352 GRNKLEVRQEAMLQMWEVMRY-G-ETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRI  429 (864)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~g-~-~~p~n~~~a~~~a~lR~~~~~akLGgA~ISA~tD~~~i~~t~~~~~~~~~~~~~~l  429 (864)
T Consensus       938 ----~a~~~dlm~Qldgl~gDFTGnrP~~~~LG~~AQRaksla~aTML~aSGlwQvAEyaTmA~R----hGv~~t~kef~ 1009 (1337)
T PHA02006        938 ----TDKVQELTGQLRGVFGDFTGNVPREHQLGPVAQRASGLTSATMLGFSGVYQLAELATMAHR----QGVFNVMKAML 1009 (1337)
T ss_pred             ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_conf             ----1669999998754530034899962303647787665666667743118999999999987----40899999999


Q ss_pred             HHC----------CCHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCC-HHHHHHHHH--------HHHHHCCHHHHHHH
Q ss_conf             413----------8054999999966799899999--99740266640-367999989--------99885243788865
Q gi|254781202|r  430 NKM----------PLKERMELLSDVGLYAEGVVAH--GRNMMEGSDAF-QIGHKLHSK--------MHKWSGAEYLDKKR  488 (864)
Q Consensus       430 ~~~----------~~~d~~~~a~~lGl~~E~~~~~--~~r~~~~~~~~-~~~~~~a~~--------~~r~SgL~~wT~~~  488 (864)
T Consensus      1010 ~~fpG~v~g~~RrnPDLaDEl~tVlGLd---LArDVR~rPWkRQ~dafL~S~DT~~DR~LhaGkQAvP~LNgMKFIH~hQ 1086 (1337)
T PHA02006       1010 NSRMGDFVGAMRRNPDLADEMQTVLGLN---LANDIRMKPWKRQFDTFLASQDTFMDRFLHAGKQAVPVLNGMKFIHNWQ 1086 (1337)
T ss_pred             HHCCHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             9684678777643962788999886111---4433106758887765532006899999970553532111236777667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHH
Q ss_conf             76769999999999997630021147732010678998617898899999841211135666410052332014457754
Q gi|254781202|r  489 ISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLR  568 (864)
Q Consensus       489 k~a~~~~~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~GI~e~dW~i~r~a~~~~~~~~~~~~~t~~~i~~~~da~i~  568 (864)
T Consensus      1087 sRmNANLtlNk~aRAA---------qGD~kAL~~lr~--Yg-~D~dW~~~~~a-----V~~nvty~G-------kNaqs- 1141 (1337)
T PHA02006       1087 SRMNANLTLNKVARAA---------QGDEAALRVLQQ--YG-KDVDWTPVLAR-----VRGYVTYRG-------RNAQS- 1141 (1337)
T ss_pred             HHHCCCHHHHHHHHHH---------CCCHHHHHHHHH--HC-CCCCHHHHHHH-----HCCCCEECC-------CCCCC-
T ss_conf             6521320188888774---------266999999998--67-85245999998-----602506635-------65322-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf             43100022333320001123457024566666554211457788656889999999998653011114566543221000
Q gi|254781202|r  569 DLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLG  648 (864)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~  648 (864)
T Consensus      1142 ----------------mNW~~W~q~d----------------------V-d~vmN~alRiMDDsiLY--------GR--- 1171 (1337)
T PHA02006       1142 ----------------MNWGAWSQAD----------------------V-NTVMNTALRIMDDSLLY--------GR--- 1171 (1337)
T ss_pred             ----------------CCCCCCCHHH----------------------H-HHHHHHHHHHHHHHHHC--------CC---
T ss_conf             ----------------6767799788----------------------8-89999988873100301--------24---


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             24557875567899999877642999999999998742-24331134567789999999999999999999996389999
Q gi|254781202|r  649 LLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSA-KMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPS  727 (864)
Q Consensus       649 ~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~-~~~~~~~~~~~~~~a~~~~~~t~~G~~~~q~k~~l~Grdp~  727 (864)
T Consensus      1172 -~GQgssFaRSqvGQILGQFRSF-VsFAhNKLLRGT~~nsG~~G--------lAsLlAfQYPlT~lMv~anearkG~~d~ 1241 (1337)
T PHA02006       1172 -VGQNSGFARSPVGQILGQFRSF-VAFAHNKLLRGTYENSGVLG--------VASLLAFQYPLTALMMGAKAAINGKFDT 1241 (1337)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCCHHH--------HHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf             -5788752030688999999999-99874077742010367024--------9999975322899999889986587632


Q ss_pred             C----HHHHHHHHHHHCCHHHHHHHH--HCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHH---HHCCCC-CCCHHHHHHH
Q ss_conf             2----799999998505306778876--05778630357777404015558899999986---402676-5422589999
Q gi|254781202|r  728 L----PEVIYDGTLANGALLPYMDRL--TKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVE---LATKDN-ENSKVNATKA  797 (864)
Q Consensus       728 ~----~~~~~~a~~~gGg~gi~gd~l--~~~~~r~g~~~~~~~~GP~~~~~~~~~~~~~~---~~~g~~-~~~~~~~~~~  797 (864)
T Consensus      1242 Se~Gi~kmA~~aIGYTAglGF~gD~~GiV~G~~~--------mSAPV~GLA~~~~~i~~G~~~L~~G~~ps~A~~D~~~~ 1313 (1337)
T PHA02006       1242 SDEGIRKMAIDGIGYTAGLGFTADMWGVVTGHSR--------MSAPVFGLAEHSNEVFRGVKDLVTGDDPAAATGDIVSG 1313 (1337)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCC--------CCCCCCCHHCCCCCHHHCCCHHCCCCCHHHHHHHHHHH
T ss_conf             0677999988640300002420322200147787--------67643002118960541534010688847788899985


Q ss_pred             HHHCCCCCCHHHH-HHHH
Q ss_conf             9731877448999-9999
Q gi|254781202|r  798 IRKTLPFMNMWYL-KNSF  814 (864)
Q Consensus       798 ~~~~~P~~nLwy~-k~a~  814 (864)
T Consensus      1314 A~~ALPFV~V~P~T~LL~ 1331 (1337)
T PHA02006       1314 AAGALPFVNVFPATKLLL 1331 (1337)
T ss_pred             HCCCCCCCCCCCCHHHHH
T ss_conf             402486234463089999

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 90.00

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

No hit with probability higher than 90.00

Protein GIs
254781185	254781186
254781187	254781188
peg_1128	254781189
254781190	254781191
254781192	254781193
254781194	255764515
254781196	254781197
254781198	254781199
peg_1140	255764516
peg_1142	255764517
254781202	254781203
254781204	254781205
254781206	254781207
254781208	254781209
254781210	254781211
254781212	254781213
254781214	254781215
254781216	254781217
254781218	254781219
254781220	254781221
254781222	254781223
254781224	254781225
254781226	254781227
254781228	254780122
254780123	254780124
254780125	254780126
254780127	254780128
254780129	254780130
254780131	254780132
254780133	254780134
254780135	254780136
peg_15	254780137
254780138	254780139
254780140	254780141
peg_21	254780142
254780143	254780144
254780145	peg_26
254780146	254780147
254780148	254780149
254780150	254780151
peg_33	peg_34
254780152	peg_36
254780153	254780154
254780155	254780156
254780157	254780158
peg_42	254780159
254780160	254780161
254780162	254780163
254780164	254780165
254780166	254780167
254780168	254780169
peg_54	254780170
254780171	254780172
254780173	254780174
peg_60	254780175
254780176	254780177
254780178	254780179
254780180	254780181
254780182	254780183
254780184	254780185
254780186	254780187
254780188	peg_74
peg_75	254780189
254780190	254780191
255764460	peg_80
254780193	peg_82
254780194	254780195
254780196	254780197
254780198	254780199
254780200	254780201
254780202	peg_91
254780203	254780204
254780205	254780206
254780207	254780208
peg_97	peg_98
254780209	254780210
254780211	254780212
254780213	254780214
254780215	255764461
254780217	254780218
254780219	254780220
peg_109	254780221
254780222	254780223
254780224	254780225
254780226	peg_116
254780227	254780228
254780229	254780230
254780231	254780232
254780233	254780234
254780235	254780236
254780237	peg_128
254780238	254780239
254780240	254780241
254780242	254780243
254780244	254780245
254780246	254780247
254780248	254780249
254780250	254780251
254780252	254780253
254780254	254780255
254780256	254780257
254780258	254780259
254780260	254780261
254780262	254780263
254780264	254780265
254780266	254780267
254780268	254780269
254780270	254780271
254780272	254780273
254780274	peg_166
254780275	254780276
254780277	254780278
254780279	254780280
254780281	254780282
254780283	254780284
254780285	254780286
254780287	254780288
254780289	254780290
254780291	254780292
254780293	peg_186
254780294	254780295
255764462	254780297
peg_191	254780298
254780299	254780300
254780301	254780302
254780303	254780304
254780305	254780306
254780307	254780308
254780309	254780310
peg_204	254780311
254780312	254780313
254780314	254780315
254780316	254780317
254780318	254780319
254780320	254780321
254780322	254780323
peg_218	254780324
254780325	254780326
254780327	254780328
peg_224	254780329
254780330	peg_227
254780331	254780332
254780333	254780334
peg_232	254780335
peg_233	254780336
254780337	254780338
peg_237	254780339
254780340	254780341
254780342	254780343
254780344	254780345
254780346	254780347
254780348	peg_248
254780349	254780350
254780351	peg_252
255764463	peg_254
254780353	254780354
254780355	254780356
254780357	255764464
254780359	254780360
254780361	255764465
254780363	254780364
254780365	255764466
254780367	254780368
254780369	254780370
254780371	254780372
254780373	254780374
254780375	254780376
254780377	254780378
254780379	254780380
254780381	254780382
254780383	254780384
255764467	254780386
254780387	254780388
254780389	254780390
254780391	254780392
255764468	255764469
254780395	peg_298
254780396	254780397
254780398	254780399
254780400	254780401
254780402	254780403
254780404	254780405
254780406	254780407
254780408	254780409
254780410	254780411
254780412	254780413
254780414	255764470
254780416	254780417
254780418	254780419
254780420	254780421
255764471	254780423
254780424	254780425
254780426	peg_330
254780427	255764472
254780429	254780430
254780431	254780432
255764473	254780434
254780435	254780436
254780437	254780438
254780439	254780440
255764474	254780442
254780443	peg_348
peg_349	254780444
254780445	254780446
254780447	254780448
254780449	254780450
254780451	254780452
254780453	254780454
peg_360	254780455
254780456	peg_363
254780457	254780458
254780459	254780460
254780461	254780462
254780463	254780464
254780465	254780466
peg_374	254780467
254780468	254780469
254780470	254780471
254780472	254780473
254780474	254780475
254780476	254780477
254780478	254780479
254780480	254780481
254780482	254780483
254780484	peg_393
peg_394	254780485
254780486	254780487
254780488	254780489
254780490	254780491
254780492	254780829
254780828	254780827
254780826	255764475
255764476	254780824
254780823	peg_409
peg_410	254780822
254780821	254780820
peg_414	255764477
254780818	254780817
254780816	254780815
254780814	254780813
254780812	254780811
peg_423	254780810
254780809	254780808
254780807	254780806
254780805	254780804
254780803	254780802
254780801	254780800
254780799	254780798
254780797	254780796
254780795	254780794
254780793	255764478
254780791	254780790
254780789	254780788
254780787	254780786
254780785	254780784
254780783	254780782
255764479	254780781
254780780	peg_455
255764480	254780779
254780778	254780777
254780776	254780775
254780774	254780773
254780772	254780771
254780770	255764481
254780768	254780767
254780766	254780765
254780764	peg_472
peg_473	254780763
254780762	peg_476
peg_477	254780761
254780760	254780759
254780758	254780757
255764482	254780755
254780754	254780753
254780752	254780751
254780750	254780749
254780748	254780747
peg_493	254780746
254780745	254780744
254780743	254780742
254780741	254780740
254780739	255764483
254780737	254780736
254780735	254780734
254780733	254780732
peg_509	255764484
254780730	254780729
254780728	254780727
255764485	254780725
254780724	254780723
254780722	254780721
254780720	254780719
254780718	peg_523
254780717	254780716
254780715	254780714
254780713	254780712
254780711	254780710
peg_532	254780709
254780708	254780707
255764486	254780705
254780704	254780703
255764487	254780701
peg_542	254780700
254780699	254780698
254780697	254780696
254780695	254780694
254780693	254780692
254780691	254780690
254780689	254780688
254780687	255764488
254780685	254780684
254780683	254780682
255764489	254780680
peg_563	254780679
254780678	254780677
254780676	254780675
254780674	peg_568
254780673	255764490
254780671	254780670
254780669	peg_574
254780668	254780667
254780666	255764491
peg_577	254780664
254780663	254780662
254780661	peg_582
254780660	254780659
254780658	254780657
255764492	254780655
254780654	254780653
254780652	254780651
254780650	peg_593
254780649	254780648
254780647	254780646
peg_598	254780645
254780644	255764493
254780642	254780641
254780640	peg_603
254780639	254780638
255764494	254780636
254780635	254780634
254780633	254780632
254780631	peg_612
254780630	254780629
254780628	254780627
254780626	254780625
254780624	254780623
254780622	254780621
254780620	254780619
254780618	254780617
254780616	254780615
254780614	254780613
254780612	254780611
254780610	peg_634
255764495	254780608
254780607	254780606
254780605	254780604
254780603	254780602
254780601	254780600
255764496	254780598
255764497	254780596
254780595	254780594
254780593	254780592
254780591	254780590
254780589	254780588
255764498	peg_658
254780586	254780585
254780584	254780583
254780582	254780581
255764499	254780579
254780578	254780577
254780576	254780575
255764500	peg_671
254780573	254780572
254780571	254780570
254780569	254780568
254780567	254780565
254780564	254780563
254780562	peg_683
254780561	255764501
254780559	254780558
254780557	254780556
254780555	peg_691
254780554	254780553
254780552	254780551
255764502	254780549
254780548	254780547
254780546	254780545
254780544	254780543
254780542	255764503
254780540	254780539
254780538	254780537
254780536	254780535
254780534	254780533
254780532	254780531
254780530	254780529
254780528	254780527
254780526	254780525
254780524	254780523
254780522	254780521
254780520	254780519
254780518	255764504
254780516	254780515
254780514	254780513
254780512	254780511
254780510	254780509
254780508	254780507
254780506	254780505
254780504	254780503
254780502	254780501
254780500	254780499
254780498	254780497
254780496	254780495
254780494	254780493
254780830	254780831
254780832	254780833
peg_753	peg_754
254780834	255764505
254780836	254780837
peg_759	254780838
254780839	254780840
254780841	254780842
254780843	254780844
254780845	254780846
254780847	254780848
254780849	254780850
254780851	254780852
254780853	254780854
254780855	254780856
254780857	254780858
254780859	254780860
254780861	254780862
254780863	254780864
254780865	254780866
254780867	254780868
254780869	peg_786
254780870	peg_788
peg_789	254780871
254780872	254780873
254780874	254780875
254780876	254780877
254780878	254780879
254780880	254780881
254780882	254780883
255764506	254780885
254780886	254780887
254780888	peg_804
254780889	254780890
254780891	254780892
254780893	254780894
254780895	254780896
peg_813	254780897
254780898	peg_816
peg_817	peg_818
254780899	254780900
254780901	254780902
254780903	254780904
254780905	254780906
254780907	254780908
254780909	255764507
254780911	254780912
254780913	254780914
peg_834	254780915
254780916	254780917
254780918	254780919
254780920	254780921
254780922	254780923
254780924	254780925
254780926	254780927
254780928	254780929
254780930	254780931
peg_851	peg_852
254780932	254780933
254780934	254780935
254780936	254780937
254780938	254780939
254780940	254780941
254780942	254780943
254780944	254780945
254780946	254780947
peg_869	254780948
254780949	255764508
peg_873	peg_874
254780951	254780952
254780953	254780954
254780955	peg_880
254780956	254780957
254780958	254780959
peg_885	254780960
peg_887	peg_888
peg_889	254780961
254780962	254780963
254780964	254780965
254780966	254780967
254780968	254780969
254780970	254780971
254780972	254780973
254780974	254780975
peg_905	254780976
254780977	254780978
254780979	254780980
peg_911	peg_912
254780981	peg_913
254780982	254780983
peg_916	254780984
254780985	254780986
254780987	254780988
254780989	254780990
254780991	254780992
254780993	254780994
254780995	254780996
254780997	254780998
254780999	peg_930
peg_931	254781000
254781001	254781002
254781003	254781004
peg_937	254781005
254781006	254781007
254781008	peg_942
254781009	254781010
peg_945	254781011
254781012	254781013
254781014	peg_950
254781015	254781016
254781017	254781018
254781019	254781020
255764509	254781022
254781023	254781024
254781025	peg_961
254781026	254781027
254781028	254781029
254781030	254781031
254781032	254781033
254781034	255764510
254781036	254781037
254781038	254781039
254781040	254781041
254781042	254781043
254781044	254781045
254781046	254781047
254781048	254781049
254781050	254781051
254781052	254781053
254781054	254781055
254781056	254781057
254781058	peg_993
254781059	254781060
254781061	254781062
254781063	254781064
254781065	254781066
254781067	254781068
254781069	254781070
254781071	254781072
254781073	254781074
254781075	254781076
254781077	254781078
254781079	254781080
254781081	254781082
254781083	254781084
254781085	254781086
254781087	254781088
254781089	254781090
254781091	254781092
254781093	254781094
254781095	254781096
254781097	254781098
254781099	254781100
254781101	254781102
254781103	254781104
255764511	254781106
254781107	254781108
254781109	254781110
peg_1044	254781111
254781112	254781113
254781114	254781115
255764512	255764513
254781118	254781119
254781120	254781121
254781122	254781123
254781124	254781125
peg_1058	254781126
254781127	254781128
254781129	254781130
254781131	peg_1064
254781132	254781133
254781134	254781135
254781136	254781137
254781138	254781139
254781140	peg_1073
peg_1074	254781141
254781142	254781143
254781144	254781145
peg_1078	peg_1079
peg_1080	254781146
254781147	peg_1083
254781148	254781149
peg_1086	peg_1087
254781150	254781151
254781152	peg_1090
254781153	254781154
254781155	254781156
254781157	254781158
254781159	peg_1096
254781160	254781161
254781162	254781163
peg_1101	254781164
254781165	254781166
254781167	254781168
254781169	peg_1107
254781170	254781171
254781172	255764514
254781174	254781175
254781176	254781177
254781178	254781179
254781180	254781181
peg_1120	254781182
254781183	peg_1123
254781184

254781202

hypothetical protein CLIBASIA_05545

Prediction of Local Sequence Properties

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Conserved Domains in CDD DatabaseDetected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Conserved Domains in CDD Database Detected by HHsearch

Homologous Structures in PDB DatabaseDetected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Homologous Structures in PDB70 Database Detected by HHsearch

Homologous Domains in SCOP and MMDB DatabaseDetected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Homologous Domains in MMDB70 Database Detected by HHsearch

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch