254781206

254781206

hypothetical protein CLIBASIA_05565

GeneID in NCBI database:8210231Locus tag:CLIBASIA_05565
Protein GI in NCBI database:254781206Protein Accession:YP_003065619.1
Gene range:-(1205806, 1209546)Protein Length:1246aa
Gene description:hypothetical protein
COG prediction:[N] [T] Methyl-accepting chemotaxis protein
KEGG prediction:hypothetical protein
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOP1 TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------
MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG
cccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccccHHHHccHHHHcccccccccccEEHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHcccccccEEEEEccccHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccHHEEccHHHccHHHHHccccHHHHHHHHHHHccccccccccccccccccEEHHHcccHHHHcccccccHHHHHHHHHHHcccccccEEEcccccccHHHHcccccHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHccccccccEEEEEcccccccHHEEEEEccccEEEEEEEcccccccccHHHcccc
cccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHcHHHHcccccEEEccccccccEccccccccccccHHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHccccccccccHccccccHHHcccccHHHcccEEccHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccEEEEHHHHcccccccccEEHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccEEEEEHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHcccccccccccccccccccccHHHHHHEHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccEcccccccHHHHHHHHHHHHcccccHEHHHHHHHcccccccccccccccccHHHccccHHHHHHHHHHHHHccHcccccccccccccEEEEEcccccccccccccccEHHHHHcccccccccccEEEEcccccHHHcccccccccccccccccEEEEEccccccccccccccccEEEEEEEEEEEEcccEEEEEcccccccHHHHcccccccEEEEEEccccccccHEEEEEccccEEEEEEEEEccccccccEEcccc
MNELATSIDyqtnnldqdkipsedVAKTLTSIQDNIKHLREFIIAWssdlnphkdrydyivGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVgtklkentppttfTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQkeydesekgsskARYHAAYAHIYWDLAndwvngrvgdksdewarTSTNIASWIGRitrteglggvtyDQIKQLRDLASKVKADYHWAeirhgnrfkaeTRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADkdlqektpikaegddfglglpsvpthsvklppkeeeLEEVKdegkkgkepgttetddreeterknqdildnsllagkthtknetpaiptakappaqahkgiqdkkpqdqrekplasdigvgesdyagikLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYrsyspvdgsykgtqesDKAINHfldndfgyyrihnflsqwsplglmyekdelHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRrlvkedpkrgksesYLSDIRSELQKVNKTVMDIRIKLRLYGifqdipqeqpplytiisgsekilqgdytfpplssldvqskfdSSYSKLFEIFYgdwtnnaikeeRYWTIYAFERSLKNQAHLNAEVERlsglaqqpsdstADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADakenpnpnknqKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFkasfeyplgtyepaILGAMKdmdrlhpiysVSKTiqkaggdpslmmdyekvepsdvmaglPDDLAKRFKALLSWkgwhqltpapkistpsfevssyvnpkrmhadtesDIYFEEFKRslsswedeprieverdatlprlakddgskedeyegganeryvcipsmdtsesfnstmgkkrRIFKVVVRVINTADLevgilgfpivpveelrgkpktgefevlvpsdaslnpeiiirqktggyfCLTSITahtqfegeryehrhg
MNELATsidyqtnnldqdkipSEDVAKTLTSIQDNIKHLREFIIAwssdlnphkdryDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRlaetgevilsdksdrLLCRFMDMVEtedehkinKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAidvgtklkentppTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGdksdewartstniaswigritrteglggvtYDQIKQLRDLASKVKADYHWAEirhgnrfkaeTRLAYSTIANVANFTSELKQATVLARANAQEEKQRReqeakekadrekadkeakekadrekadkdlqektpikaegddfglglpsvpthsvklppkeeeleevkdegkkgkepgttetddreeterknqdildnsllagkthtknetpaiptakappaqahkgiqdkkpqdqrekplasdigvgesdyaGIKLTKKEKELQEQEENLRVAEiiqqsrmqsedLQEKAWDSYKewkslspdeIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFevlsskhqksviaVNNFIKEithhtrrlvkedpkrgksesylsdIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIfygdwtnnaIKEERYWTIYAFERSLKNQAHLNAEVERLSglaqqpsdstadLKELQTQLSrakkykesnderiVSFIRSEFEREIKELKSVieadakenpnpnknqkklqKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHqltpapkistpsfEVSSYVNPKRMHADTESDIYFEEFKRslsswedeprieverdatlprlakddgskedeyegganeryvcipsmdtsesfnstmgkkrriFKVVVRVINTAdlevgilgfpivpveelrgkpKTGEfevlvpsdaslnPEIIIRQKTGGYFCLTSITahtqfegeryehrhg
MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLaranaqeekqrreqeakekadrekadkeakekadrekadkdLQEKTPIKAEGDDFGLGLPSVPTHSvklppkeeeleevkdegkkgkepgttetddreeterKNQDILDNSLLAGKTHTKNETpaiptakappaqaHKGIQDKKPQDQREKPLASDIGVGESDYAGIkltkkekelqeqeeNLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKEnpnpnknqkklqkTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPSMDTSESFNSTMGkkrrifkvvvrviNTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG
****ATS*DYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELA*********HIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKE*********************AAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQL*******************************************************************************************************************************************************************************************************************************************************************************QKYAKVFYRS*******************HFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVD********************************NNFIKEITHH************************LQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDV*****SSYSKLFEIFYGDWTNNAIKEERYWTIYAFE****************************************************SFIRSEFE*****************************************LKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQK*GGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTP**********V****************IYFEEFKR**********IEVERDA******************GANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQF**********
MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNH*************ARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA*****************************************QEKTPIKAEGDDFGLGLPSVPTHSVKLPPK*******************************NQDILDNSLLAGKTHTKNETPAIPT*************************ASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQS**********AWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAM*********************KHQKSVIAVNNFIKEITHHTRR*************YLSDIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQ***********DERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAK***********GANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFE*********
**ELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQR******************************LQEKTPIKAEGDDFGLGLPS**************************************************LLAG************************************P******VGESDYAGIKLTKKEKELQEQEENLRVAEIIQQ******DLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKA**********HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGL****SDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRM**DT*SDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPS******F****GKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGE*Y*****
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MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKxxxxxxxxxxxxxxxxxxxxxSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKxxxxxxxxxxxxxxxxxxxxxQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIxxxxxxxxxxxxxxxxxxxxxNPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target1246 hypothetical protein CLIBASIA_05565 [Candidatus Liberib
3171206721340 hypothetical protein SC1_gp060 [Liberibacter phage SC1] 1 0.0
315121931327 hypothetical protein CKC_00905 [Candidatus Liberibacter 1 1e-18
315122424101 hypothetical protein CKC_03380 [Candidatus Liberibacter 1 2e-17
317120714413 hypothetical protein SC2_gp070 [Liberibacter phage SC2] 1 9e-04
31512242386 hypothetical protein CKC_03375 [Candidatus Liberibacter 1 0.003
3288700171814 hypothetical protein DFA_03886 [Dictyostelium fascicula 2 7e-09
308457811616 hypothetical protein CRE_26828 [Caenorhabditis remanei] 2 7e-06
308457811616 hypothetical protein CRE_26828 [Caenorhabditis remanei] 2 6e-05
224122178 1681 predicted protein [Populus trichocarpa] Length = 1681 2 1e-05
328870962 1641 villin [Dictyostelium fasciculatum] Length = 1641 2 2e-05
>gi|317120672|gb|ADV02495.1| hypothetical protein SC1_gp060 [Liberibacter phage SC1] Length = 1340 Back     alignment and organism information
 Score = 2574 bits (6672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1246/1246 (100%), Positives = 1246/1246 (100%)

Query: 1    MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 60
            MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI
Sbjct: 95   MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 154

Query: 61   VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 120
            VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL
Sbjct: 155  VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 214

Query: 121  CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 180
            CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ
Sbjct: 215  CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 274

Query: 181  KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 240
            KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA
Sbjct: 275  KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 334

Query: 241  ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 300
            ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN
Sbjct: 335  ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 394

Query: 301  DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 360
            DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE
Sbjct: 395  DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 454

Query: 361  IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 420
            IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD
Sbjct: 455  IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 514

Query: 421  KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 480
            KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG
Sbjct: 515  KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 574

Query: 481  KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 540
            KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ
Sbjct: 575  KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 634

Query: 541  DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 600
            DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS
Sbjct: 635  DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 694

Query: 601  YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 660
            YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF
Sbjct: 695  YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 754

Query: 661  LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 720
            LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK
Sbjct: 755  LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 814

Query: 721  HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 780
            HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM
Sbjct: 815  HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 874

Query: 781  DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 840
            DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE
Sbjct: 875  DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 934

Query: 841  IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 900
            IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL
Sbjct: 935  IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 994

Query: 901  SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 960
            SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ
Sbjct: 995  SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 1054

Query: 961  LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1020
            LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ
Sbjct: 1055 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1114

Query: 1021 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1080
            KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY
Sbjct: 1115 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1174

Query: 1081 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1140
            VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE
Sbjct: 1175 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1234

Query: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1200
            RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE
Sbjct: 1235 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1294

Query: 1201 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1246
            FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG
Sbjct: 1295 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1340



Species: Liberibacter phage SC1
Genus: 
Family: Podoviridae
Order: Caudovirales
Class: 
Phylum: 
Superkingdom: Viruses
>gi|315121931|ref|YP_004062420.1| hypothetical protein CKC_00905 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 327 Back     alignment and organism information
>gi|315122424|ref|YP_004062913.1| hypothetical protein CKC_03380 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 101 Back     alignment and organism information
>gi|317120714|gb|ADV02536.1| hypothetical protein SC2_gp070 [Liberibacter phage SC2] Length = 413 Back     alignment and organism information
>gi|315122423|ref|YP_004062912.1| hypothetical protein CKC_03375 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 86 Back     alignment and organism information
>gi|328870017|gb|EGG18392.1| hypothetical protein DFA_03886 [Dictyostelium fasciculatum] Length = 1814 Back     alignment and organism information
>gi|308457811|ref|XP_003091269.1| hypothetical protein CRE_26828 [Caenorhabditis remanei] Length = 616 Back     alignment and organism information
>gi|308457811|ref|XP_003091269.1| hypothetical protein CRE_26828 [Caenorhabditis remanei] Length = 616 Back     alignment and organism information
>gi|224122178|ref|XP_002330559.1| predicted protein [Populus trichocarpa] Length = 1681 Back     alignment and organism information
>gi|328870962|gb|EGG19334.1| villin [Dictyostelium fasciculatum] Length = 1641 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target1246 hypothetical protein CLIBASIA_05565 [Candidatus Liberib
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.002
PRK09510387 PRK09510, tolA, cell envelope integrity inner membrane 0.003
KOG10291118 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein in 0.004
>gnl|CDD|163023 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|181920 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 90.00

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target1246 hypothetical protein CLIBASIA_05565 [Candidatus Liberib
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated PIT, 0.004
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
 Score = 39.9 bits (92), Expect = 0.004
 Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 13/80 (16%)

Query: 553 VGESDYAGIKLTKKEKELQE--QEENLRVAEIIQQSRMQSEDLQEKAWDSYKEW-----K 605
           + ++D    +LT++ + +++  +E+  R+ E+   S++  ++ +EKA    +EW     +
Sbjct: 74  IAQAD----RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 606 SLSPDEIKQRFQKYAKVFYR 625
            +  ++I  R     K FY+
Sbjct: 130 QVEKNKINNRIAD--KAFYQ 147

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 90.00

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

No hit with probability higher than 90.00