254781220
hypothetical protein CLIBASIA_05635
| GeneID in NCBI database: | 8210245 | Locus tag: | CLIBASIA_05635 |
| Protein GI in NCBI database: | 254781220 | Protein Accession: | YP_003065633.1 |
| Gene range: | +(1221374, 1221766) | Protein Length: | 130aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 130 | hypothetical protein CLIBASIA_05635 [Candidatus Liberib | |||
| 254780122 | 123 | hypothetical protein CLIBASIA_00005 [Candidatus Li | 8e-09 | ||
| 254780229 | 1775 | hypothetical protein CLIBASIA_00570 [Candidatus Li | 0.039 |
| >gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] Length = 123 | Back alignment |
|---|
Score = 50.8 bits (120), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
MG LK ++ +EI N+ F S N +P+ + E+++ E L+ + ++
Sbjct: 1 MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56
Query: 58 RTIRTHILE--DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSE 115
R+ T IL+ D ++++ I L +A + L+ + E W E D E E E
Sbjct: 57 RSDST-ILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYE 108
Query: 116 HPDQEHKEDYYASQI 130
HPDQEH+EDYYA+QI
Sbjct: 109 HPDQEHREDYYANQI 123
|
| >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 | Back alignment |
|---|
Score = 28.5 bits (62), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 33 NYEVEVIEKLERALKTSKKL--IHFR----DRTIRTHILEDLIEEVNRII 76
NY IE LERA+K +K L HF+ D I+T +D +E + R+I
Sbjct: 160 NYGYADIEDLERAIKENKPLKPPHFQNNLSDNQIQTAYFQDKLESILRLI 209
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 130 | hypothetical protein CLIBASIA_05635 [Candidatus Liberib | |||
| 317120693 | 123 | hypothetical protein SC1_gp185 [Liberibacter phage SC1] | 1 | 4e-05 | |
| 254780122 | 123 | hypothetical protein CLIBASIA_00005 [Candidatus Liberib | 1 | 6e-05 | |
| 315121961 | 128 | hypothetical protein CKC_01055 [Candidatus Liberibacter | 1 | 2e-04 |
| >gi|317120693|gb|ADV02516.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1] Length = 123 | Back alignment and organism information |
|---|
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
MG LK ++ +EI N+ F S N +P+ + E+++ E L+ + ++
Sbjct: 1 MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56
Query: 58 RTIRTHILE--DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSE 115
R+ T IL+ D ++++ I L +A + L+ + E W E D E E E
Sbjct: 57 RSDST-ILDKLDAVDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYE 108
Query: 116 HPDQEHKEDYYASQI 130
HPDQEH+EDYYA+QI
Sbjct: 109 HPDQEHREDYYANQI 123
|
Species: Liberibacter phage SC1 Genus: Family: Podoviridae Order: Caudovirales Class: Phylum: Superkingdom: Viruses |
| >gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] Length = 123 | Back alignment and organism information |
|---|
| >gi|315121961|ref|YP_004062450.1| hypothetical protein CKC_01055 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 128 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 130 | hypothetical protein CLIBASIA_05635 [Candidatus Liberib | ||
| PRK08999 | 312 | PRK08999, PRK08999, hypothetical protein; Provisional | 0.001 |
| >gnl|CDD|181607 PRK08999, PRK08999, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00