Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value
Target 100
PRK13581 526
PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
2e-19
TIGR01327 525
TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase
1e-11
cd04879 71
cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the
2e-09
cd04903 71
cd04903, ACT_LSD, C-terminal ACT domain of the L-serine
3e-05
cd04902 73
cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) dom
2e-11
>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 89.4 bits (223), Expect = 2e-19
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ 60
VF DG+PR ++I D M+ I N D G++ VG +LGE GINIA LGR +
Sbjct: 430 VFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRRE 489
Query: 61 STEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97
+ A+ L +D + VLE+L I K E
Sbjct: 490 AGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526
>gnl|CDD|162302 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase
Back Show alignment and domain information
Score = 63.9 bits (156), Expect = 1e-11
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ 60
VF PR ++I + D++ +M+ I++ D G++ VG +LG GINIA LGR +
Sbjct: 429 VFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKE 488
Query: 61 STEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97
A+ L +D + + VLE++ I V +
Sbjct: 489 KGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. Length = 525
>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Score = 56.3 bits (137), Expect = 2e-09
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83
+ IV+ D+ G++ VG ILGE+GINIA +GR + A L +D + VLE+L
Sbjct: 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEEL 59
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71
>gnl|CDD|153175 cd04903, ACT_LSD, C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit
Back Show alignment and domain information
Score = 42.1 bits (100), Expect = 3e-05
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83
+V+ D G + V ++L ++ INIA + R + + A+ + +D I V+E++
Sbjct: 4 VVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEI 59
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71
>gnl|CDD|153174 cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Score = 62.5 bits (153), Expect = 2e-11
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84
M+ + N D G++ VG ILGE GINIA +GR + A+ L +D + + VLE+L
Sbjct: 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELR 60
Query: 85 VNVTIRFVKQFEF 97
I K E
Sbjct: 61 ALPGILSAKVVEL 73
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between identical domains in the asymmetric unit. How this asymmetry influences the mechanism of effector inhibition is still unknown. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
100
PRK13581 524
D-3-phosphoglycerate dehydrogenase; Provisional
100.0
cd04903 71
ACT_LSD C-terminal ACT domain of the L-serine dehydrata
99.91
cd04902 73
ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3
99.9
cd04879 71
ACT_3PGDH-like ACT_3PGDH-like CD includes the C-termina
99.87
cd04901 69
ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Pho
99.81
PRK11790 409
D-3-phosphoglycerate dehydrogenase; Provisional
99.76
TIGR01327 535
PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR0
99.75
TIGR00719 208
sda_beta L-serine dehydratase, iron-sulfur-dependent, b
99.65
LOAD_ACT 76
consensus
98.9
cd04883 72
ACT_AcuB C-terminal ACT domain of the Bacillus subtilis
98.56
PRK08577 135
hypothetical protein; Provisional
98.47
pfam01842 66
ACT ACT domain. This family of domains generally have a
98.46
cd04874 72
ACT_Af1403 N-terminal ACT domain of the yet uncharacter
98.44
cd04878 72
ACT_AHAS N-terminal ACT domain of the Escherichia coli
98.42
cd04882 65
ACT_Bt0572_2 C-terminal ACT domain of a novel protein c
98.39
PRK06737 76
acetolactate synthase 1 regulatory subunit; Validated
98.29
COG1760 262
SdaA L-serine deaminase [Amino acid transport and metab
98.26
CHL00100 172
ilvH acetohydroxyacid synthase small subunit
98.24
PRK10872 743
relA GDP/GTP pyrophosphokinase; Provisional
98.24
PRK08178 96
acetolactate synthase 1 regulatory subunit; Reviewed
98.19
PRK11895 161
ilvH acetolactate synthase 3 regulatory subunit; Review
98.17
COG2150 167
Predicted regulator of amino acid metabolism, contains
98.17
cd04881 79
ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal AC
98.16
cd04888 76
ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.
98.11
PRK04435 146
hypothetical protein; Provisional
97.89
cd04872 88
ACT_1ZPV ACT domain proteins similar to the yet unchara
97.89
PRK11092 702
bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bi
97.88
COG1707
218
ACT domain-containing protein [General function predict
97.85
PRK10820
513
DNA-binding transcriptional regulator TyrR; Provisional
97.84
PRK00194 90
hypothetical protein; Validated
97.84
cd04909 69
ACT_PDH-BS C-terminal ACT domain of the monofunctional,
97.76
PRK06349 432
homoserine dehydrogenase; Provisional
97.73
PRK13011
287
formyltetrahydrofolate deformylase; Reviewed
97.69
cd04887 74
ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-termina
97.67
cd04875 74
ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofo
97.67
cd04869 81
ACT_GcvR_2 ACT domains that comprise the Glycine Cleava
97.51
COG0317 701
SpoT Guanosine polyphosphate pyrophosphohydrolases/synt
97.51
PRK13562 84
acetolactate synthase 1 regulatory subunit; Provisional
97.5
cd04877 74
ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT
97.41
COG0440 163
IlvH Acetolactate synthase, small (regulatory) subunit
97.35
COG0788
287
PurU Formyltetrahydrofolate hydrolase [Nucleotide trans
97.35
TIGR00655
294
PurU formyltetrahydrofolate deformylase; InterPro: IPR0
97.26
PRK06027
285
purU formyltetrahydrofolate deformylase; Reviewed
97.21
cd04926 72
ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT
97.21
PRK11589 183
gcvR glycine cleavage system transcriptional repressor;
97.2
cd04905 80
ACT_CM-PDT C-terminal ACT domain of the bifunctional ch
97.19
PRK13010
289
purU formyltetrahydrofolate deformylase; Reviewed
97.19
cd04899 70
ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacter
97.0
COG0077 279
PheA Prephenate dehydratase [Amino acid transport and m
96.97
KOG2663
309
consensus
96.94
cd04900 73
ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, inclu
96.83
cd04908 66
ACT_Bt0572_1 N-terminal ACT domain of a novel protein c
96.8
PRK05007
881
PII uridylyl-transferase; Provisional
96.77
cd04873 70
ACT_UUR-ACR-like ACT domains of the bacterial signal-tr
96.75
COG3830 90
ACT domain-containing protein [Signal transduction mech
96.74
cd04870 75
ACT_PSP_1 CT domains found N-terminal of phosphoserine
96.7
cd04880 75
ACT_AAAH-PDT-like ACT domain of the nonheme iron-depend
96.6
PRK05007 881
PII uridylyl-transferase; Provisional
96.59
COG4747 142
ACT domain-containing protein [General function predict
96.59
PRK03381
781
PII uridylyl-transferase; Provisional
96.36
cd04928 68
ACT_TyrKc Uncharacterized, N-terminal ACT domain of an
96.31
PRK11898 285
prephenate dehydratase; Provisional
96.31
cd04895 72
ACT_ACR_1 ACT domain-containing protein which is compos
96.28
PRK11899 284
prephenate dehydratase; Provisional
96.25
cd04904 74
ACT_AAAH ACT domain of the nonheme iron-dependent, arom
96.18
cd04925 74
ACT_ACR_2 ACT domain-containing protein which is compos
96.18
COG4492 150
PheB ACT domain-containing protein [General function pr
96.16
cd04913 75
ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensi
95.78
PRK10622 386
pheA bifunctional chorismate mutase/prephenate dehydrat
95.75
PRK01759 862
glnD PII uridylyl-transferase; Provisional
95.69
PRK11152 76
ilvM acetolactate synthase 2 regulatory subunit; Provis
95.64
cd04929 74
ACT_TPH ACT domain of the nonheme iron-dependent aromat
95.58
PRK11589
183
gcvR glycine cleavage system transcriptional repressor;
95.41
cd04931 90
ACT_PAH ACT domain of the nonheme iron-dependent aromat
95.21
TIGR00119
205
acolac_sm acetolactate synthase, small subunit; InterPr
94.94
COG4747 142
ACT domain-containing protein [General function predict
94.93
cd04893 77
ACT_GcvR_1 ACT domains that comprise the Glycine Cleava
94.69
PRK03059 857
PII uridylyl-transferase; Provisional
94.09
PRK00275 894
glnD PII uridylyl-transferase; Provisional
94.05
PRK03381 781
PII uridylyl-transferase; Provisional
93.8
PRK05092 934
PII uridylyl-transferase; Provisional
93.78
COG3283
511
TyrR Transcriptional regulator of aromatic amino acids
93.43
COG2061 170
ACT-domain-containing protein, predicted allosteric reg
93.35
TIGR00691 741
spoT_relA RelA/SpoT family protein; InterPro: IPR004811
93.14
PRK08198 406
threonine dehydratase; Provisional
92.15
) and D-serine dehydratase ( ) catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase ( ) (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase ( ) is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01127">TIGR01127381
ilvA_1Cterm threonine dehydratase; InterPro: IPR005789
91.76
PRK06382 400
threonine dehydratase; Provisional
91.63
TIGR01693 903
UTase_glnD protein-P-II uridylyltransferase; InterPro:
90.6
cd04876 71
ACT_RelA-SpoT ACT domain found C-terminal of the RelA/S
98.38
cd04889 56
ACT_PDH-BS-like C-terminal ACT domain of the monofuncti
97.81
cd02116 60
ACT ACT domains are commonly involved in specifically b
97.47
PRK03059
857
PII uridylyl-transferase; Provisional
96.93
PRK00275
894
glnD PII uridylyl-transferase; Provisional
96.68
PRK04374
869
PII uridylyl-transferase; Provisional
96.55
PRK01759
862
glnD PII uridylyl-transferase; Provisional
96.49
PRK05092
934
PII uridylyl-transferase; Provisional
96.27
cd04886 73
ACT_ThrD-II-like C-terminal ACT domain of biodegradativ
95.7
COG2844 867
GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttr
93.29
PRK09977 215
putative Mg(2+) transport ATPase; Provisional
92.66
cd04884 72
ACT_CBS C-terminal ACT domain of the cystathionine beta
92.3
PRK07431
594
aspartate kinase; Provisional
91.8
cd04891 61
ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensi
90.77
PRK06545 357
prephenate dehydrogenase; Validated
97.54
COG2716 176
GcvR Glycine cleavage system regulatory protein [Amino
96.36
TIGR01693
903
UTase_glnD protein-P-II uridylyltransferase; InterPro:
93.86
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.9e-34 Score=202.45 Aligned_cols=97 Identities=36% Similarity=0.574 Sum_probs=95.2
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 95587378999799899765798399999828786688999899736996322774214789818999994788998999
Q 537021.9.peg.3 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL 80 (100)
Q Consensus 1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl 80 (100)
T Consensus 428 vf~~~~pRIV~I~g~~vd~~p~G~mL~~~n~D~PGvIG~VGtiLG~~~INIA~m~lgR~~~gg~Ai~vl~vD~~v~~evl 507 (524)
T PRK13581 428 VFGDGEPRIVEINGFRVDAKPEGHMLVIRNRDRPGVIGKIGTLLGEHGINIASMQLGRDEAGGEALMVLSVDDPVPDEVL 507 (524)
T ss_pred EECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHCEECCCCCCCEEEEEEECCCCCCHHHH
T ss_conf 93599068999999999985467689997078697143988888656989233574578899747999987999999999
Q ss_pred HHHHCCCCEEEEEEEEE
Q ss_conf 99864988299999997
Q 537021.9.peg.3 81 EKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 81 ~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 508 ~~l~~~~~I~~v~~v~l 524 (524)
T PRK13581 508 EELKALPGILSAKAVEL 524 (524)
T ss_pred HHHHCCCCCEEEEEEEC
T ss_conf 99866888428999759
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit
Back Show alignment and domain information
Probab=99.91 E-value=3.7e-24 Score=148.27 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=69.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 1 TL~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R~~~g~~A~~ii~~D~~v~~~~l~~i~~~~~I~~v~~I 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 98999448699199999999865968036187515899789999992899999999999759995699979
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Probab=99.90 E-value=6.5e-24 Score=146.95 Aligned_cols=73 Identities=37% Similarity=0.535 Sum_probs=71.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 1 ~Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l~R~~~g~~A~~vi~vD~~v~~~~l~~i~~~~~V~~v~~i~L 73 (73)
T cd04902 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9899816989928999999987097788843257689987899999089999999999975989528999869
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Probab=99.87 E-value=3e-22 Score=138.21 Aligned_cols=71 Identities=37% Similarity=0.498 Sum_probs=69.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 1 ~L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r~~~g~~A~~ii~vD~~v~~~~l~~i~~~~~v~~vr~i 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 98899439799899999999985978899641236799758999990898999999999769980899979
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria
Back Show alignment and domain information
Probab=99.81 E-value=6.6e-20 Score=125.82 Aligned_cols=69 Identities=25% Similarity=0.271 Sum_probs=65.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 1 Ri~~ih~NvPG~l~~I~~il~~~~iNI~~m~~--~srg~~ay~vidvd~~~~~~~~~~l~~i~gvi~vR~i 69 (69)
T cd04901 1 RILHIHKNVPGVLGQINTILAEHNINIAAQYL--QTRGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCHHHHCC--CCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 96687169886899999999985999799724--2689768999990798989999999729985999769
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=2.2e-18 Score=117.85 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 58737899979989976579839999982878668899989973699632277421478981899999478899899999
Q 537021.9.peg.3 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK 82 (100)
Q Consensus 3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~ 82 (100)
T Consensus 318 ~G~i~nsVN~P~~~~~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~~~n--~s~~~~aY~i~D~~~~~~~~~~~~ 395 (409)
T PRK11790 318 NGSTLSAVNFPEVSLPEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAAQYL--QTDAEIGYVVIDVDADDSEEALEA 395 (409)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHH--CCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 698114402477567778887069998079875899999999876999889862--067765499997888885999999
Q ss_pred HHCCCCEEEEEEE
Q ss_conf 8649882999999
Q 537021.9.peg.3 83 LSVNVTIRFVKQF 95 (100)
Q Consensus 83 i~~~~~v~~vr~i 95 (100)
T Consensus 396 l~~i~~vi~vR~l 408 (409)
T PRK11790 396 LKAIPGTIRARLL 408 (409)
T ss_pred HHHCCCEEEEEEE
T ss_conf 9848988999860
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis
Back Show alignment and domain information
Probab=99.75 E-value=6.9e-18 Score=115.20 Aligned_cols=97 Identities=34% Similarity=0.548 Sum_probs=93.7
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCCEEEEEEEECCCCCHHH
Q ss_conf 95587378999799899765798399999828786688999899736996322774214-78981899999478899899
Q 537021.9.peg.3 1 VFSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRS-QSTEHAISFLCIDGSILNSV 79 (100)
Q Consensus 1 vfg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~-~~g~~A~~ii~vD~~i~~~v 79 (100)
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~d~pg~~g~~g~~~g~~~~~~~~~~~g~~~~~gg~~~~~~~~d~~~~~~~ 517 (535)
T TIGR01327 438 VFGGGGPRITEIDGFEVDLEPEGYLLIILHLDKPGVIGKVGSLLGEAGINIAGFQLGRKDEKGGDALLLLSLDDPLPDEV 517 (535)
T ss_pred EECCCCCEEEEECCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 21476503676415033003575178985067652145566664103662000111544456762378886066677579
Q ss_pred HHHHHCCCCEEEEEEEEE
Q ss_conf 999864988299999997
Q 537021.9.peg.3 80 LEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 80 l~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 518 ~~~~~~~~~~~~~~~~~~ 535 (535)
T TIGR01327 518 LEELKELPGILDAKLVDL 535 (535)
T ss_pred HHHHHHCCHHHHEEEEEC
T ss_conf 999863010221124409
Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine
Back Show alignment and domain information
Probab=99.65 E-value=2.2e-16 Score=107.26 Aligned_cols=82 Identities=18% Similarity=0.398 Sum_probs=79.7
Q ss_pred CCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 55873789997998997657983999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3 2 FSDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 2 fg~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
T Consensus 127 IGGG~~~I~~~NG~~~~l~G~~~~IL~~~~~~~G~I~~V~~~L~~~~~N~~~l~~~~~~~~~~~~lT~E~D~~~~~~~~~ 206 (208)
T TIGR00719 127 IGGGKIKIVELNGIELRLRGEYSAILLVYNDKFGVIAYVASLLAKFEINVESLEVKKKDLTNLVLLTVEVDKNLDDSLKD 206 (208)
T ss_pred ECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHH
T ss_conf 26873799851656999707864799986687423001024450351011134544430032899999816881057674
Q ss_pred HH
Q ss_conf 98
Q 537021.9.peg.3 82 KL 83 (100)
Q Consensus 82 ~i 83 (100)
T Consensus 207 ~~ 208 (208)
T TIGR00719 207 EL 208 (208)
T ss_pred CC
T ss_conf 19
The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
>LOAD_ACT consensus
Back Show alignment and domain information
Probab=98.90 E-value=5.4e-09 Score=68.30 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=62.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~v~~v~~~ 74 (76)
T LOAD_ACT 1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTSEKGGLARIVFVVDVEDDEDLEKILKELLLLEDVLKVVRV 74 (76)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 97999957787799999999864989420670356888668899999549979999999998457887889957
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB
Back Show alignment and domain information
Probab=98.56 E-value=4.8e-07 Score=58.01 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
T Consensus 2 SrIev~V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~ilv~Rv~T~~p~~li~~L~~~ 64 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHC
T ss_conf 559999579867299999999975975899998416889858999997259969999999988
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK08577 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.47 E-value=1e-06 Score=56.25 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEE--EEEEEECCC--CCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818--999994788--998999998649882999999974
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHA--ISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A--~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
T Consensus 57 ~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~VkeV~i~~l~ 135 (135)
T PRK08577 57 VELELVVEDRPGVLAKISGLLAEHGVDILATECEELKRGELAECVIIVDVSKSDIDLKELEEELKALEEVKEVEIRELE 135 (135)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 9999999459756999999998748531110211000376100899998545779999999998724531489999639
>pfam01842 ACT ACT domain
Back Show alignment and domain information
Probab=98.46 E-value=7.6e-07 Score=56.97 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=55.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 39999982878668899989973699632277421478-981899999478899899999864988
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVNVT 88 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~~~ 88 (100)
T Consensus 1 ~~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T pfam01842 1 TVLEVGVPDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLLG 66 (66)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 969997079883799999999877999478997466787625999996675459999999987449
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a
Back Show alignment and domain information
Probab=98.44 E-value=2.3e-06 Score=54.46 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=59.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788-99899999864988299999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~ 94 (100)
T Consensus 3 l~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~~-~g~~~iY~ElE~v~d~e~Li~~L~~~~~V~eVei 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEC-CCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 79995687746999887998648986999999807-9828999999679998999999877995599994
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)
Back Show alignment and domain information
Probab=98.42 E-value=1.8e-06 Score=55.05 Aligned_cols=70 Identities=13% Similarity=0.330 Sum_probs=58.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994788--9989999986498829999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 1 htisvlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~~~sR~tivv~~~~~~i~qi~kQL~KlidVi~V~ 72 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKVS 72 (72)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 979999977878999999998607855678998613799848999999788899999999985776879959
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains
Back Show alignment and domain information
Probab=98.39 E-value=1.7e-06 Score=55.08 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=50.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
T Consensus 2 iaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d--~e~a~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQE 59 (65)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECC--HHHHHHHHHH
T ss_conf 899947988719999999988798879999994378976899998199--9999999998
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Back Show alignment and domain information
Probab=98.29 E-value=4.9e-06 Score=52.72 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE--EEECCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999--99478899899999864988299999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISF--LCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~i--i~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100)
T Consensus 2 ~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~te~~~~SRmTivv~gd~~~ieQi~kQL~KLidVikV~d 75 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK 75 (76)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 35899998178768898777862166571125674667998207999997781349999999850546699776
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=98.26 E-value=1.2e-09 Score=71.80 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=86.6
Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 5873789997998997657983999998287866889-998997369963227742147898189999947889989999
Q 537021.9.peg.3 3 SDGKPRFIKIQEINFDVDIGRLMICIVNADILGIVVF-VGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 3 g~g~~riv~i~g~~v~~~~~~~~L~i~~~D~PG~I~~-v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
T Consensus 161 ~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~ 238 (262)
T COG1760 161 GMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIE 238 (262)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHHHHCC--CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 56899999982999778665358998246--8765032205111220229989999986686532211778897499999
Q ss_pred HHHCCCCEEEEEEEEE
Q ss_conf 9864988299999997
Q 537021.9.peg.3 82 KLSVNVTIRFVKQFEF 97 (100)
Q Consensus 82 ~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 239 tM~~~g~~m~~~y~et 254 (262)
T COG1760 239 TMYETGKDMNVKYRET 254 (262)
T ss_pred HHHHHHHHCCHHHHCC
T ss_conf 9999753343245113
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Back Show alignment and domain information
Probab=98.24 E-value=7.7e-06 Score=51.67 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC--CCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999994788--9989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS--ILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~--i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 2 rhtisvlVeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt 77 (172)
T CHL00100 2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDIT 77 (172)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 3699999977867999999998517867236997214899815999999689999999999995582702643067
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Back Show alignment and domain information
Probab=98.24 E-value=5.7e-06 Score=52.37 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---7889989999986498829999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 668 ~I~I~a~Dr~GlL~dIt~vIs~~~~NI~~v~~~sd~~~~~~~i~~~ieV~d~~~L~~li~~Lr~i~~V~~V~Rv~ 742 (743)
T PRK10872 668 VVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLH 742 (743)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999999778789999999998479983663526617898899999999788999999999975899941798288
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Back Show alignment and domain information
Probab=98.19 E-value=1.7e-05 Score=49.88 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 7983999998287866889998997369963227742147898189999947-889989999986498829999999
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-GSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 6 ~~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~te~~~~SRiTivv~~d~~leQi~kQL~KLidVi~V~~l~ 82 (96)
T PRK08178 6 HDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSRIWLLVNDDQRLEQMISQIDKLEDVLKVRRNQ 82 (96)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 77089999995778789999888750566812078851389981089999889844899999986150769999889
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Back Show alignment and domain information
Probab=98.17 E-value=1.3e-05 Score=50.39 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=60.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 2 r~tisvlveN~~GvL~RisglFsrRg~NI~SL~v~~te~~~iSR~Tiv~~g~~~~i~QI~kQL~KLidVi~V~dlt 77 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVAPTEDPGLSRITIVTSGDERVLEQITKQLNKLIDVLKVVDLT 77 (161)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 4599999977867999999998506865466665024799815999999689999999999996321403466458
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Back Show alignment and domain information
Probab=98.17 E-value=1.1e-05 Score=50.80 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=58.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 99998287866889998997369963227742147898189999947889989999986498829999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 98 IYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEE
T ss_conf 99546777658999999998759618987257966578850899980568878999986356721487
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains
Back Show alignment and domain information
Probab=98.16 E-value=8.2e-06 Score=51.54 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf 999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF 97 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~ 97 (100)
T Consensus 3 lRl~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~~~~a~iviiTh~~~e~~i~~al~~i~~l~~v~~~~~~iRI 78 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPSVIRV 78 (79)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9998078785799999999974988765151576789965589995325099999999999749863678718960
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a
Back Show alignment and domain information
Probab=98.11 E-value=3e-05 Score=48.56 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=57.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEE
Q ss_conf 999998287866889998997369963227742147898189999947889----98999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 2 Tl~l~l~d~~G~LS~vL~~ia~~~~NILTInQsIP-i~g~A~vtiS~d~s~~~~~i~~ll~~l~~i~gV~~vei~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 89999828875399999999976983999647887-688899999999047766899999998707992799971
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK04435 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=97.89 E-value=0.00019 Score=44.36 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=60.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC----CHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 3999998287866889998997369963227742147898189999947889----98999998649882999999974
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI----LNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i----~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
T Consensus 69 iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~I-Pi~g~A~vtiSi~~s~~~~~i~~ll~~l~~~~gV~~v~i~~~e 146 (146)
T PRK04435 69 ITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSI-PINGRANVTLSIDTSSMEGDIDELLEKLRNLDGVEKVELIGME 146 (146)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 99999983887579999999997699789971688-7788677999999147667999999998707991589988629
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein
Back Show alignment and domain information
Probab=97.89 E-value=2.8e-05 Score=48.69 Aligned_cols=60 Identities=25% Similarity=0.231 Sum_probs=42.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC---C-HHHHHHHHCC
Q ss_conf 999998287866889998997369963227742147898189999947889---9-8999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI---L-NSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i---~-~~vl~~i~~~ 86 (100)
T Consensus 3 VITviG~Dr~GIVa~vt~~Lae~~iNI~DisQ--ti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~ 66 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQ--TIMDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE--EEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99997799887899999999986998895350--26757789999999457679999999999999
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Back Show alignment and domain information
Probab=97.88 E-value=7.5e-05 Score=46.45 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=55.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 628 ~i~I~~~dr~GlL~dIt~vIs~~~~NI~~v~~~-~~~~~~~~~~i~ieV~d~~hL~~ii~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVSRN 700 (702)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999678788999999998579981578868-7489889999999989899999999998679992569846
>COG1707 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=97.85 E-value=0.0001 Score=45.74 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=60.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788-998999998649882999999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~ 75 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIH 75 (218)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf 68886047528998788998618965864122330671679999960787899999986334547876200
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Back Show alignment and domain information
Probab=97.84 E-value=6.7e-05 Score=46.72 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=62.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 2 rlei~c~DRvGi~~dil~~l~~~~idl~~iEv~--~~~~iyl~~~~~~~~~~~~l~~~ir~i~gv~~v~~v~~ 72 (513)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--PIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPW 72 (513)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 269995155635999999999769883699972--68838997786687889999999854898543677604
>PRK00194 hypothetical protein; Validated
Back Show alignment and domain information
Probab=97.84 E-value=3.7e-05 Score=48.05 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=43.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789818999994788---99-8999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~~ 86 (100)
T Consensus 4 avITV~G~DrpGIVa~Vt~~La~~~~NI~Dis--Qti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~ 68 (90)
T PRK00194 4 AIITVIGKDRVGIVAGVSTVLAELNVNILDIS--QTIMDGYFTMIMLVDISKSDKDFAALQEELEEL 68 (90)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECC--CCEECCEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999879988789999999998699989551--121057468999998367679999999999999
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)
Back Show alignment and domain information
Probab=97.76 E-value=8.2e-05 Score=46.25 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=41.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 3999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100)
T Consensus 2 ydl~vdVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~~~~ 53 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE 53 (69)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHH
T ss_conf 2799967999986999999999879874724876851478847999968989
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06349 homoserine dehydrogenase; Provisional
Back Show alignment and domain information
Probab=97.73 E-value=0.0001 Score=45.75 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=52.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEE-EEEEEE
Q ss_conf 9839999982878668899989973699632277421478981899999478899---899999864988299-999997
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRF-VKQFEF 97 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~-vr~i~~ 97 (100)
T Consensus 351 s~yYLRl~V~D~PGVLa~It~ila~~~ISI~sviQ-~~~~~~~a~iViiTh~~~e~~i~~Al~eI~~L~~V~~~~~~IRI 429 (432)
T PRK06349 351 TKYYLRLLVADKPGVLAKIAAIFAENGVSIESILQ-KGADDDGAEIVVVTHETSEAALRAALAAIEALDVVVGVPSVIRI 429 (432)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 54699998567503799999999876986247776-48889953699991628799999999998749652578737964
Q ss_pred E
Q ss_conf 4
Q 537021.9.peg.3 98 N 98 (100)
Q Consensus 98 ~ 98 (100)
T Consensus 430 E 430 (432)
T PRK06349 430 E 430 (432)
T ss_pred C
T ss_conf 6
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=97.69 E-value=7.4e-05 Score=46.50 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=54.1
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CC-HHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994788---99-899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---IL-NSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~-~~vl~~i~~ 85 (100)
T Consensus 2 ~~~~~~~IL~isCPD~~GIVA~VS~~L~~~ggNI~e~~Qf~D~~~~~FFMRvef~~~~~~~~~~~l~~~f~~ 73 (287)
T PRK13011 2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFRPEDEGLDEDALRAGFAP 73 (287)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 988777999998999996099999999968998957625358988808999999827888899999999999
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains
Back Show alignment and domain information
Probab=97.67 E-value=0.00048 Score=42.23 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=52.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEE
Q ss_conf 999998287866889998997369963227742147898189999947---889989999986498829999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 1 TlRl~~~~~pG~Lg~vataIg~~GGnI~~idvve~~~-~~~v~Ditv~~~d~~h~~~Iv~al~~l~gV~V~~ 71 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGR-DYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECC-CEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899954998649999999987698567789999449-9599999998697788999999996199859999
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)
Back Show alignment and domain information
Probab=97.67 E-value=0.00015 Score=44.87 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=45.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 999998287866889998997369963227742147898189999947889
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI 75 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i 75 (100)
T Consensus 1 iL~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~ 51 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG 51 (74)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC
T ss_conf 989978998881999999999879988662377369898489999997589
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains
Back Show alignment and domain information
Probab=97.51 E-value=0.00021 Score=44.12 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=39.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCE----EEEEEEECCCCC-HHHHHHHHCC
Q ss_conf 999982878668899989973699632277421478--981----899999478899-8999998649
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS--TEH----AISFLCIDGSIL-NSVLEKLSVN 86 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~--g~~----A~~ii~vD~~i~-~~vl~~i~~~ 86 (100)
T Consensus 2 ~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89980899887999999999869981466877763999981036899999379999999999999999
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Back Show alignment and domain information
Probab=97.51 E-value=0.00055 Score=41.88 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=58.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994---788998999998649882999999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 628 ~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R~ 701 (701)
T COG0317 628 VDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRRL 701 (701)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999804656699999999857883699641236-78637999999978689999999998558982789839
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
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Probab=97.50 E-value=0.00062 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 83999998287866889998997369963227742147898189999947---889989999986498829999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID---GSILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD---~~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 2 krtl~~~V~dq~gvLNRIT~lF~RrqfNI~sltVg~te~~gIS~mt~vv~v~d~~~~eqlikqL~KqInVL~V~~~~ 78 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYD 78 (84)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_conf 61899999547508889899999851782268863678988342699996486789999999998545579899983
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein
Back Show alignment and domain information
Probab=97.41 E-value=0.0005 Score=42.11 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=60.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 2 RLeI~c~DRiGi~~eiL~lL~~~~IdL~giEi~--~~g~IYl~~~~l~f~~~~~Lm~~ir~I~GV~dVktv~~ 72 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 389997300014999999999779983288872--68818997787898999999999847898316788613
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=97.35 E-value=0.0011 Score=40.32 Aligned_cols=76 Identities=14% Similarity=0.307 Sum_probs=61.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEEE
Q ss_conf 79839999982878668899989973699632277421478981899999478--89989999986498829999999
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQFE 96 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i~ 96 (100)
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CCEEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 734899999977898141416888751766320799602789815899998278516899999987543502689847
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=97.35 E-value=0.00071 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf 79839999982878668899989973699632277421478981899999478899----8999998649
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL----NSVLEKLSVN 86 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100)
T Consensus 5 ~~~~~Ltv~Cpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPL 74 (287)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 6524999966998870999999999849866442125664478079999986388865499999889988
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised
Back Show alignment and domain information
Probab=97.26 E-value=0.00058 Score=41.75 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=50.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCC-----------HHHHHHHHC-CC
Q ss_conf 999998287866889998997369963227742-1478981899999478899-----------899999864-98
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSIL-----------NSVLEKLSV-NV 87 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~-----------~~vl~~i~~-~~ 87 (100)
T Consensus 2 ~Ll~~CpD~kGlva~is~f~~~~g~NIi~~dq~~~D~~~g~Ff~R~e~~~~~~~~nteikeq~~~~L~~~~~~ala 77 (294)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQFSVDPETGRFFMRVELQLEGFRLNTEIKEQEESELLAAFKSALA 77 (294)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 0123159788728999999997489867417564415777131234440368731200001405899999986434
The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=97.21 E-value=0.00087 Score=40.85 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC---CCH-HHHHHHHC
Q ss_conf 98399999828786688999899736996322774214789818999994788---998-99999864
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS---ILN-SVLEKLSV 85 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~---i~~-~vl~~i~~ 85 (100)
T Consensus 4 ~~~IL~isCPD~~GIVA~VT~~L~~~g~NI~e~~Qf~D~~t~~FFMRvef~~~~~~~~~~~L~~~f~~ 71 (285)
T PRK06027 4 QRYILLLSCPDRPGIVAAVSNFLYEHGGNIIDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 71 (285)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 45999998999996099999999968999937535458989828899999847988899999999999
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=97.21 E-value=0.003 Score=37.98 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=48.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 3 ~lEv~~~DRpGLL~~itr~l~e~gL~I~~A~IsT--~Gera~DvFYVtD~~G~~idp~~~e~ir~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 7999869968689999999998791588999960--49889899999899989989999999999
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Back Show alignment and domain information
Probab=97.20 E-value=0.00054 Score=41.92 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=36.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEEEECCCCC
Q ss_conf 3999998287866889998997369963227742147--8981899999478899
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQ--STEHAISFLCIDGSIL 76 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~--~g~~A~~ii~vD~~i~ 76 (100)
T Consensus 96 ~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iP 150 (183)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSP 150 (183)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCC
T ss_conf 9999997898988999999999869987652221144999997369999998079
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme
Back Show alignment and domain information
Probab=97.19 E-value=0.0044 Score=37.12 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=46.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
T Consensus 2 tsl~f~~~~~pGsL~~~L~~f~~~~iNLtkIeS-RP~~~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~~ 69 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIES-RPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 799999899785899999999987976799996-76389984499999985587988999999999985
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=97.19 E-value=0.0012 Score=40.07 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 98399999828786688999899736996322774214789818999994788
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~ 74 (100)
T Consensus 8 ~s~IL~l~CPD~~GIVA~VS~~L~~~g~NI~e~~Qf~D~~~~~FFMRv~f~~~ 60 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ 60 (289)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 97899998999886299999999978998807325427888808999999627
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains
Back Show alignment and domain information
Probab=97.00 E-value=0.0059 Score=36.47 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=46.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 2 vieV~~~DrpGLL~~i~~~l~~~~l~I~~A~I~T--~g~~v~D~FyV~d~~g~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8999978955599999999998893899999984--09989999999899989299999999999
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=96.97 E-value=0.0071 Score=36.04 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCCCC
Q ss_conf 798399999828786688999899736996322774214789--818999994788998----99999864988
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVNVT 88 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~~~ 88 (100)
T Consensus 192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIES-RP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~eL~~~t~ 264 (279)
T COG0077 192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIES-RPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITE 264 (279)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHEE
T ss_conf 734999998599870499999999876946226860-2068987059999999547686669999999985302
>KOG2663 consensus
Back Show alignment and domain information
Probab=96.94 E-value=0.0012 Score=40.18 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=53.7
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 579839999982878668899989973699632277421478981899--99947889989999986498829999
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663 74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 3400158888317822888888888761577213133004445444415889554789999999999764420231
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains
Back Show alignment and domain information
Probab=96.83 E-value=0.013 Score=34.65 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CC-CC-CHHHHHHHHC
Q ss_conf 8399999828786688999899736996322774214789818999994---78-89-9899999864
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DG-SI-LNSVLEKLSV 85 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~-~i-~~~vl~~i~~ 85 (100)
T Consensus 1 ~tei~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~~~-g~~~D~F~V~d~~g~~i~~~~~~~~i~~ 67 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRD-GYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 939999968978789999999998898599999998589-8699999998899997999999999999
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains
Back Show alignment and domain information
Probab=96.80 E-value=0.0041 Score=37.31 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=43.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 99998287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100)
T Consensus 4 lSVFlENk~GrL~~v~~~L~~~~InI~AlsiaDt~--dfgilRlivdd--p~~A~~~L~~~G 61 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTS--EFGILRLIVSD--PDKAKEALKEAG 61 (66)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEECC--HHHHHHHHHHCC
T ss_conf 89996179645999999998789978998721366--86589999489--899999999879
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
>PRK05007 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.77 E-value=0.01 Score=35.18 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHH
Q ss_conf 98399999828786688999899736996322774214789818999994----788998999998
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKL 83 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i 83 (100)
T Consensus 697 g~tei~I~~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t~~d-g~~ld~F~V~~~~g~~~~~~r~~~i 761 (881)
T PRK05007 697 GGTEIFIYSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRD-GMAMDTFIVLEPDGSPLSQDRHQVI 761 (881)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 8079999960788739999999986898368878798179-8089999997788998998999999
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
Back Show alignment and domain information
Probab=96.75 E-value=0.014 Score=34.48 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=44.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 99999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 2 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~I~T~--~~~~~D~F~V~d~~g~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEC--CCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689788999999999887950779999964--9989999999889969399999999999
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=96.74 E-value=0.0017 Score=39.28 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=38.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 39999982878668899989973699632277421478981899999478899
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL 76 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~ 76 (100)
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~~~ 54 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDISKE 54 (90)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEHH--HHHHHHHCEEEEEECCCHH
T ss_conf 89999758877334999999997698188777--9999623116657727767
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)
Back Show alignment and domain information
Probab=96.70 E-value=0.0055 Score=36.61 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCC-CCHHHHHHHHC
Q ss_conf 999982878668899989973699632277421478981899--9994788-99899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGS-ILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~-i~~~vl~~i~~ 85 (100)
T Consensus 2 Itv~G~DrpGi~a~v~~~La~~~~~IlDI~--Q~vi~~~l~l~~lv~ip~~~~~~~l~k~L~~ 62 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVG--QAVIHGRLSLGILVQIPDSADSEALLKDLLF 62 (75)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE--HHHCCCEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899779988789999999987799089625--5506475779999980785346899999999
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)
Back Show alignment and domain information
Probab=96.60 E-value=0.024 Score=33.27 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=45.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf 9999828786688999899736996322774214789--81899999478899----8999998649
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL----NSVLEKLSVN 86 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100)
T Consensus 2 i~f~~~~~pGaL~~~L~~F~~~~iNlt~IeS-RP~~~~~~~y~F~id~eg~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIES-RPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8999689787899999999988966799995-77499995699999971685978999999999984
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
>PRK05007 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.59 E-value=0.022 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 803 ~~~TviEv~a~DrpGLL~~I~~~f~~~~l~I~~AKI--sT~GerveDvFyVtd~~g~kL~~~~~~~l~~ 869 (881)
T PRK05007 803 DRKSFMELIALDQPGLLARVGKIFADLGISLHGAKI--TTIGERVEDLFILATADGRALNEELQQELRQ 869 (881)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 873899998588067999999999988987989896--2547648999999889979698999999999
>COG4747 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=96.59 E-value=0.0057 Score=36.54 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 839999982878668899989973699632277421478981899999478
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG 73 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~ 73 (100)
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed 118 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVED 118 (142)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC-CEEEEEEEHHH
T ss_conf 248999815888708899998741486720145653037-33799998457
>PRK03381 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.36 E-value=0.022 Score=33.49 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 983999998287866889998997369963227742147898189999947
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID 72 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD 72 (100)
T Consensus 599 ~~~~v~V~~~DrpgLfa~iag~La~~~l~I~~A~i~t--~dg~ald~f~V~ 647 (781)
T PRK03381 599 PGFEVTVVAPDRRGLLSKAAGVLALNRLRVRSASANS--HDGVALLEFVVS 647 (781)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCEEEEEEEC
T ss_conf 8479999846875459999999986799358899972--699089999971
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
Back Show alignment and domain information
Probab=96.31 E-value=0.011 Score=35.06 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=48.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 3999998287866889998997369963227742147898189999947889989999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~ 81 (100)
T Consensus 2 hEitfst~dkPklLsqls~lL~d~GLNI~EAH~fs-T~DGysLdVFVV~GW~~ee~~~ 58 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGETAA 58 (68)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHEEE-CCCCCEEEEEEECCCCHHHHHH
T ss_conf 06998617851589999999998173442342264-3787278899981888253899
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK11898 prephenate dehydratase; Provisional
Back Show alignment and domain information
Probab=96.31 E-value=0.049 Score=31.62 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=47.0
Q ss_pred CCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 983999998-28786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 22 GRLMICIVN-ADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~-~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
T Consensus 194 ~KtSl~f~~~~d~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FyiD~egh~~d~~v~~aL~~l~~~ 264 (285)
T PRK11898 194 DKTSLALTLPANVPGALYKALSEFAWRGINLTRIES-RPTKTGLGEYFFFIDLEGHIDDVLVAEALKELEAL 264 (285)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 779999994899986799999999987937588982-01689996189999984687989999999999985
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=96.28 E-value=0.03 Score=32.73 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC-----CCCCHHHHHHHHCC
Q ss_conf 999998287866889998997369963227742147898189999947-----88998999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID-----GSILNSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD-----~~i~~~vl~~i~~~ 86 (100)
T Consensus 3 vieV~s~drpGlL~~v~q~L~dl~L~I~~A~I--sT~Ge~~~DVFyVtD~~G~Ki~d~~~i~~I~~~ 67 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYI--SSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKS 67 (72)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCEEEEEEEE--ECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99980699986599999999868928989999--425988999999806999995588999999998
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK11899 prephenate dehydratase; Provisional
Back Show alignment and domain information
Probab=96.25 E-value=0.057 Score=31.27 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=46.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHH----HHHHHHCC
Q ss_conf 399999828786688999899736996322774214789--8189999947889989----99998649
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNS----VLEKLSVN 86 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~----vl~~i~~~ 86 (100)
T Consensus 195 Tsl~~~~~d~pGaL~~vL~~Fa~~~INLtkIeS-RP~~~~~~~Y~F~iD~egh~~d~~~~~al~~l~~~ 262 (284)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLES-YMVGGSFTATQFYADIEGHPEDRNVALALEELRFF 262 (284)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 789997389861999999999987987568850-12599984399999960687989999999999985
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)
Back Show alignment and domain information
Probab=96.18 E-value=0.043 Score=31.89 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC--HHHHHHHHCCCCEEEEEEE
Q ss_conf 99999828786688999899736996322774214789--81899999478899--8999998649882999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL--NSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~--~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 2 Si~fs~~~~~GaL~~~L~~F~~~~iNlt~IES-RPs~~~~~~y~FfvD~eg~~~~i~~al~~Lk~~--~~~vkil 73 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIES-RPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV--VADVNIL 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH--CCEEEEC
T ss_conf 69999589864899999999987986789983-338999975999999608989999999999974--7828851
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=96.18 E-value=0.039 Score=32.12 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=41.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEC----CCCC-HHHHHHHHC
Q ss_conf 99998287866889998997369963227742147898189999947----8899-899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCID----GSIL-NSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD----~~i~-~~vl~~i~~ 85 (100)
T Consensus 3 iEltg~DRPGLLsei~avLsdl~~~v~~A~iwT~~~-Rva~v~yvtD~~tG~~I~d~~Rla~I~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNG-RLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-EEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 887139987269999999986878458878522377-1799999972678996789899999999
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=96.16 E-value=0.055 Score=31.34 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994788----99899999864988299999997
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivgs 149 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVGS 149 (150)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99999971333159999999997278479986044-437642589999713324229999999852155468998506
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins
Back Show alignment and domain information
Probab=95.78 E-value=0.0071 Score=36.03 Aligned_cols=66 Identities=20% Similarity=0.087 Sum_probs=42.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf 9999828786688999899736996322774214789---818999994788998999998649882999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100)
T Consensus 5 tl~gvpd~PG~aa~iF~~La~~~InVDmIvQ-~~~~~~~~disFTv~~~dl~~a~~vl~~~~~~l~~~~v 73 (75)
T cd04913 5 TLRGVPDKPGVAAKIFGALAEANINVDMIVQ-NVSRDGTTDISFTVPKSDLKKALAVLEKLKKELGAEEV 73 (75)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9828999996699999999985984799986-16789945899990499999999999999986497234
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Back Show alignment and domain information
Probab=95.75 E-value=0.094 Score=30.11 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=47.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCH----HHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789--818999994788998----999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILN----SVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~----~vl~~i~~~ 86 (100)
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~~INLtkIeS-RP~~~~~~~Y~FfvD~eGh~~d~~v~~aL~~l~~~ 365 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLES-RPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI 365 (386)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 73689996699987799999999987978657863-20799996479999972787999999999999986
>PRK01759 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=95.69 E-value=0.15 Score=29.02 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=48.9
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 5798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 788 s~~~TvleV~a~DrpGLL~~I~~~f~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~ 855 (862)
T PRK01759 788 KQEHTEMELFALDKAGLLAEVSQIFSELNLNLLNAKI--TTIGEKAEDFFILTNQQGQALDEQERKALKS 855 (862)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8884899999688178999999999987987989896--2678548999999789979199899999999
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Back Show alignment and domain information
Probab=95.64 E-value=0.025 Score=33.11 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHH-HHHHCCCCEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994788998999-99864988299999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVL-EKLSVNVTIRFVKQ 94 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl-~~i~~~~~v~~vr~ 94 (100)
T Consensus 2 ~~h~L~i~a~~rPevLERiLRVvRHRGF~v~~m~m~~~~~~~~~~i~ltV~SdR~i~lL~~QL~KL~DV~~v~v 75 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCQMNMTANSDAQNINIELTVASERAIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CEEEEEEEEECCCHHHEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCEEEEEE
T ss_conf 51899999706977831263478416849999762673899889999999057739999998874271689996
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes
Back Show alignment and domain information
Probab=95.58 E-value=0.11 Score=29.70 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=42.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCC--HHHHHHHHC
Q ss_conf 9999982878668899989973699632277421478-981899999478899--899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSIL--NSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~--~~vl~~i~~ 85 (100)
T Consensus 2 SlvFslk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~~~~Y~ffvD~e~~~~~l~~~l~~Lk~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 0999968865679999999998697779985587878897189999903997999999999998
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Back Show alignment and domain information
Probab=95.41 E-value=0.038 Score=32.17 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
T Consensus 10 vit~~G~DrpGiv~~v~~~~~~~g~ni~dSrm~~lg--~~f~~imlvSg--~~~ai~~lE~ 66 (183)
T PRK11589 10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLG--EEFTFIMLLSG--SWNAITLIES 66 (183)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CEEEEEEEECC--CHHHHHHHHH
T ss_conf 999970898738999999999769987266688745--70699999408--8758899986
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)
Back Show alignment and domain information
Probab=95.21 E-value=0.15 Score=29.07 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=46.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCC---HHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789--81899999478899---8999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSIL---NSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~---~~vl~~i~~~ 86 (100)
T Consensus 13 ~ktSlifs~~~~~GaL~~~L~~F~~~~INLt~IES-RPsk~~~~eY~FfVD~e~~~~~~l~~~i~~Lr~~ 81 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIES-RPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND 81 (90)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98899999389767799999999987967478876-7489999608999992388757799999999985
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789 Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids
Back Show alignment and domain information
Probab=94.94 E-value=0.062 Score=31.09 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 839999982878668899989973699632277421478981899999--4788998999998649882999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
T Consensus 2 ~~~~~~~~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~~~~~~~~~ 76 (205)
T TIGR00119 2 KHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQLTKQLNKLVDVLKVSDL 76 (205)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 405776651454136787776653156610013115677652047888605414689999988765433321024
They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine). These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds. This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
>COG4747 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=94.93 E-value=0.26 Score=27.79 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=43.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf 9999828786688999899736996322774214789818999994788998999998649882999
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100)
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAd--t~dFGIiRmvV--~~~d~A~~~Lee~gF~Vr~ 68 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIRAFTIAD--TGDFGIIRMVV--DRPDEAHSVLEEAGFTVRE 68 (142)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC--CCCCCEEEEEC--CCHHHHHHHHHHCCCEEEE
T ss_conf 998750786449999999997698658887303--66753699970--8858999999877938986
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains
Back Show alignment and domain information
Probab=94.69 E-value=0.041 Score=32.01 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 999998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
T Consensus 3 vit~iG~DrpGiv~~vs~~v~~~gcNi~dSrmt~lg--~~Fa~imlvsG~--w~~ia~lE 58 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILG--TEFALTMLVEGS--WDAIAKLE 58 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH--CCEEEEEEEECC--HHHHHHHH
T ss_conf 999962898659999999999869987243788873--603899999528--88999999
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
>PRK03059 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=94.09 E-value=0.35 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=49.7
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC-CC-CHHHHHHHHC
Q ss_conf 76579839999982878668899989973699632277421478981899999478-89-9899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG-SI-LNSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~-~i-~~~vl~~i~~ 85 (100)
T Consensus 782 ~~s~~~TvlEV~a~DrpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyV~g~ki~d~~~~~~i~~ 849 (857)
T PRK03059 782 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKI--NTLGERVEDVFLLDGAGLSDNRLQIQLET 849 (857)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 798874899999588177999999999988977989896--36476189999985998899899999999
>PRK00275 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=94.05 E-value=0.49 Score=26.34 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=49.8
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~ 85 (100)
T Consensus 809 ~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~~l~~ 879 (894)
T PRK00275 809 DAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI--ATLGERVEDVFFITDADGQPLSDPQLCSRLQQ 879 (894)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 898884899999588076999999999988987988896--35476089999996799996899999999999
>PRK03381 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=93.80 E-value=0.55 Score=26.07 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=49.3
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCCHHHHHHHHC
Q ss_conf 765798399999828786688999899736996322774214789818999994----78899899999864
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSILNSVLEKLSV 85 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~~~vl~~i~~ 85 (100)
T Consensus 704 ~~s~~~TvlEV~a~DRpGLL~~Ia~~l~~~gl~I~~AkI--~T~Gerv~DvFyVtd~~g~kl~d~~~~~l~~ 773 (781)
T PRK03381 704 TASPDATVLEVRAADRAGLLARLTRALEGAGVDVRWAKV--NTLGSDAVDAFYVTEAAGGPLADARRAAVER 773 (781)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 888885899999688177999999999987987988796--2688608999999779989099899999999
>PRK05092 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=93.78 E-value=0.55 Score=26.05 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE----CCCCC-HHHHHHHHC
Q ss_conf 5798399999828786688999899736996322774214789818999994----78899-899999864
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI----DGSIL-NSVLEKLSV 85 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v----D~~i~-~~vl~~i~~ 85 (100)
T Consensus 843 S~~~TviEV~a~DRPGLL~~I~~~l~~~~l~I~sAkI--aT~Gerv~DvFyVtd~~G~ki~d~~~~~~l~~ 911 (934)
T PRK05092 843 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI--ATYGERAVDVFYVTDLFGLKITNPARQAAIRR 911 (934)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 8875899999588078999999999988977999896--25576289999997899998899999999999
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=93.43 E-value=0.18 Score=28.65 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=60.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~ 72 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPW 72 (511)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 26898523210089999998654657650452--477737885775688889999999836898552367447
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=93.35 E-value=0.35 Score=27.11 Aligned_cols=68 Identities=18% Similarity=0.106 Sum_probs=52.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCE--EEEEEEEC-CCCCHHHHHHHHCCCCEEEEE
Q ss_conf 9999982878668899989973699632277421478-981--89999947-889989999986498829999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEH--AISFLCID-GSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~--A~~ii~vD-~~i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 7 tldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~ 78 (170)
T COG2061 7 TLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIR 78 (170)
T ss_pred EEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHH-HHCCCEEEE
T ss_conf 999994488712644432052348618999961374348940489999835627889999999-867948999
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat
Back Show alignment and domain information
Probab=93.14 E-value=0.63 Score=25.78 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=58.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC---HHHHHHHHCCCCEEEEEE
Q ss_conf 39999982878668899989973699632277421478981899999478899---899999864988299999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL---NSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~---~~vl~~i~~~~~v~~vr~ 94 (100)
T Consensus 668 ~~I~~~~~~~~~~L~~l~~~i~~~~~ni~~~~~~~~K~~~~~~~~~~~~~~~~~~L~~i~~~ik~~~~v~~~~r 741 (741)
T TIGR00691 668 VEIQIEALDRKGVLSDLTTAISENDSNIVSISTETKKDKREAILNITVEIKDYKHLLKIMKKIKNVEDVIDVKR 741 (741)
T ss_pred EEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89899861034689999999863872589700100258836899999986087999999998516887588509
RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
>PRK08198 threonine dehydratase; Provisional
Back Show alignment and domain information
Probab=92.15 E-value=0.92 Score=24.89 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=45.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEEEEEEEEC---CCCCHHHHHHHHCC
Q ss_conf 98399999828786688999899736996322774214789---8189999947---88998999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHAISFLCID---GSILNSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A~~ii~vD---~~i~~~vl~~i~~~ 86 (100)
T Consensus 328 r~~~~~v~i~d~PG~l~~~~~~i~~~~anI~~i~h~R~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~L~~~ 398 (406)
T PRK08198 328 RYLKLRVELPDRPGQLAKLLSIIAELRANVIDVDHDRFSPGLRLGEVEVELTLETRGPEHIDEILAALRDA 398 (406)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 97999998278996799999999757993799998872577886648999999929999999999999978
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes
Back Show alignment and domain information
Probab=91.76 E-value=1.1 Score=24.49 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=45.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 39999982878668899989973699632277421478---981899999478899899999864
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
T Consensus 307 v~I~~~~~D~PG~L~~ll~~~A~~~aNi~~i~hDR~~~~~~~G~a~v~~~L-Et~g~~H~~ei~~ 370 (381)
T TIGR01127 307 VRIETVIPDRPGALYKLLEVIAEERANIVKIEHDRLSKEIPPGFAKVELEL-ETRGKEHLDEILK 370 (381)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-EECCHHHHHHHHH
T ss_conf 999999823898669999999981697899997375777786753899998-4088689999999
L-serine dehydratase ( ) and D-serine dehydratase ( ) catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase ( ) (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase ( ) is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
>PRK06382 threonine dehydratase; Provisional
Back Show alignment and domain information
Probab=91.63 E-value=0.52 Score=26.20 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=44.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CEE--EEEEEE-CCCCCHHHHHHHHCCC
Q ss_conf 798399999828786688999899736996322774214789---818--999994-7889989999986498
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST---EHA--ISFLCI-DGSILNSVLEKLSVNV 87 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g---~~A--~~ii~v-D~~i~~~vl~~i~~~~ 87 (100)
T Consensus 322 gr~~~~~v~i~d~pG~L~~~~~~i~~~~~ni~~i~~~r~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G 394 (400)
T PRK06382 322 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG 394 (400)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9979999986889977999999970689957999987602557876268999998099999999999999878
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system
Back Show alignment and domain information
Probab=90.60 E-value=0.8 Score=25.20 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=48.3
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC----CCCH-HHHHHHH
Q ss_conf 6579839999982878668899989973699632277421478981899999478----8998-9999986
Q 537021.9.peg.3 19 VDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG----SILN-SVLEKLS 84 (100)
Q Consensus 19 ~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~----~i~~-~vl~~i~ 84 (100)
T Consensus 827 as~~~T~~E~~a~DrpGLL~~v~~~l~~~~l~i~~AkI--~T~GE~A~D~Fyvt~~~g~~l~~~~~~~~L~ 895 (903)
T TIGR01693 827 ASKKATVMEVRALDRPGLLAAVGKTLEELGLSIQSAKI--TTLGEKAEDVFYVTDLFGLKLNDEEEEQRLE 895 (903)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 15454488886378646289999998750675343456--0546645887764054575220278862389
The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains
Back Show alignment and domain information
Probab=98.38 E-value=1.6e-06 Score=55.33 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=53.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE---CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 99828786688999899736996322774214789818999994---7889989999986498829999
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI---DGSILNSVLEKLSVNVTIRFVK 93 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v~~vr 93 (100)
T Consensus 3 I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~-~~~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~~V~ 70 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRT-DDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9998377879999999998799679999997-5898699999999889999999999987799915988
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
Back Show alignment and domain information
Probab=97.81 E-value=7.1e-05 Score=46.58 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=42.7
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 999828786688999899736996322774214789818999994788998999998
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKL 83 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i 83 (100)
T Consensus 2 sVf~enrpG~L~~v~~~L~~~~InI~alsi~dt~-~~~GilRliv~~--p~~A~~~L 55 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD--PERAKEVL 55 (56)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEECC--HHHHHHHH
T ss_conf 2782389851999999999879987997620256-773489999789--89999973
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Back Show alignment and domain information
Probab=97.47 E-value=0.00028 Score=43.47 Aligned_cols=57 Identities=32% Similarity=0.425 Sum_probs=45.4
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-CCHHHHHHH
Q ss_conf 999828786688999899736996322774214789818999994788-998999998
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-ILNSVLEKL 83 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-i~~~vl~~i 83 (100)
T Consensus 2 ~i~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 3377998866999999999869895306840368897178999953777399998854
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
>PRK03059 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.93 E-value=0.0074 Score=35.93 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 678 ~~~~i~I~~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~d-G~ald~F~V 726 (857)
T PRK03059 678 EGLQVLVYTPDQPDLFARICGYFDRNGFSILDARVHTTRH-GYALDTFQV 726 (857)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CCEEEEEEE
T ss_conf 8589999957888829999999987898278889998378-838999999
>PRK00275 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.68 E-value=0.013 Score=34.62 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 703 g~t~i~V~~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~d-g~~lD~f~V 751 (894)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSS-QFTLDTYIV 751 (894)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CEEEEEEEE
T ss_conf 8069999925887659999999997898268989887379-808999999
>PRK04374 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.55 E-value=0.017 Score=33.98 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 689 ~~~ei~I~~~Dr~gLFa~i~g~L~~~~l~I~~A~I~t~~-~g~vlDtF~V 737 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAP-HDAIFDVFEV 737 (869)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCEEEEEEEE
T ss_conf 838999992688776999999999789976877778758-9838999996
>PRK01759 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.49 E-value=0.019 Score=33.79 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=40.0
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 5798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 682 ~~~~tei~I~~~Dr~~LFa~i~~~l~~~~lnI~~A~I~t~~d-g~~ld~f~V 732 (862)
T PRK01759 682 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQD-GYVFDSFIV 732 (862)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEE
T ss_conf 788269999943886689999999997898358867477378-838999999
>PRK05092 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=96.27 E-value=0.033 Score=32.52 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 734 ~~tev~V~~~DrpgLFa~iagala~~glnI~dA~I~T~~d-G~alD~F~V 782 (934)
T PRK05092 734 GVTELTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD-GRALDTFWI 782 (934)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CEEEEEEEE
T ss_conf 8489999961788859999999997899547889898489-809999999
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains
Back Show alignment and domain information
Probab=95.70 E-value=0.038 Score=32.17 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECC---CCCHHHHHHHHCC
Q ss_conf 99982878668899989973699632277421478---981899999478---8998999998649
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDG---SILNSVLEKLSVN 86 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~---~i~~~vl~~i~~~ 86 (100)
T Consensus 2 ~v~i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~L~~~ 67 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 899348981799999999986982899999864588988769999999849999999999999986
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=93.29 E-value=0.27 Score=27.74 Aligned_cols=52 Identities=8% Similarity=0.241 Sum_probs=38.0
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 765798399999828786688999899736996322774214789818999994
Q 537021.9.peg.3 18 DVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI 71 (100)
Q Consensus 18 ~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v 71 (100)
T Consensus 786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI--tT~GErveD~F~v 837 (867)
T COG2844 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI--TTFGERVEDVFIV 837 (867)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE--CCCCCCCEEEEEE
T ss_conf 657774489999678653799999998745564013253--0346531258999
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Back Show alignment and domain information
Probab=92.66 E-value=0.84 Score=25.09 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCCCCEEEEEE
Q ss_conf 78668899989973699632277421478981899999478899-899999864988299999
Q 537021.9.peg.3 33 ILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL-NSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 33 ~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~-~~vl~~i~~~~~v~~vr~ 94 (100)
T Consensus 152 ~~~~~~~i~~~l~~~~i~i~~v~i~~~~~~~~v~l~v~~~~~~~~~dl~~~L~~i~gV~~V~i 214 (215)
T PRK09977 152 VNGNTVSMLDWFKQQKIKTDLVSLQENEDHEVVTIDITLHATTSIEDLLRLLKGMAGVKGVSI 214 (215)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 358277999999984975899998982888589999997798749999999855999358840
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria
Back Show alignment and domain information
Probab=92.30 E-value=0.6 Score=25.86 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEE---CCCCCHHHHHHHHCCCCE
Q ss_conf 998287866889998997369963227742147-89818999994---788998999998649882
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQ-STEHAISFLCI---DGSILNSVLEKLSVNVTI 89 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~-~g~~A~~ii~v---D~~i~~~vl~~i~~~~~v 89 (100)
T Consensus 4 f~L~d~pGslk~v~D~Lr~~~~rI~SILTs~~~~~~g~R~V~IRi~~mD~a~l~~l~e~L~~~~~l 69 (72)
T cd04884 4 FLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV 69 (72)
T ss_pred EECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCE
T ss_conf 886899985279999998779859999833676899822899996356577799999999854557
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK07431 aspartate kinase; Provisional
Back Show alignment and domain information
Probab=91.80 E-value=0.23 Score=28.04 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=30.5
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEE--CCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 98287866889998997369963227742--1478981899999478899899999864
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLG--RSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~--r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
T Consensus 277 gv~~~pG~aa~iF~~La~~~InVDmI~Q~~~~~~~~disftv~~~dl~~a~~vl~~~~~ 335 (594)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSTHEGNSNDIAFTVAEAELKKAEAVCEAILP 335 (594)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 68998658999999999739755899862367997635897148789999999999987
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins
Back Show alignment and domain information
Probab=90.77 E-value=0.53 Score=26.15 Aligned_cols=44 Identities=18% Similarity=0.094 Sum_probs=30.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 982878668899989973699632277421478981899999478
Q 537021.9.peg.3 29 VNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG 73 (100)
Q Consensus 29 ~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~ 73 (100)
T Consensus 7 ~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~-~~~~~~isFTv~~ 50 (61)
T cd04891 7 GVPDKPGVAAKIFSALAEAGINVDMIVQSVS-RGGTTDISFTVPK 50 (61)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCC-CCCCCEEEEEECH
T ss_conf 8999975799999999985981799986588-8995218998249
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06545 prephenate dehydrogenase; Validated
Back Show alignment and domain information
Probab=97.54 E-value=0.00023 Score=43.86 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=39.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 9989976579839999982878668899989973699632277421478
Q 537021.9.peg.3 13 QEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS 61 (100)
Q Consensus 13 ~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~ 61 (100)
T Consensus 278 p~~~~g~~~~~~~l~v~i~D~pG~la~l~~~l~~~~ini~di~i~h~~r 326 (357)
T PRK06545 278 PGKHGGAIPSFYDLYVDVPDEPGVIAKVTRILAEEGISIENLRIELETR 326 (357)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCEEEECCC
T ss_conf 8766899986189998789999879999999998698726777876478
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=96.36 E-value=0.0043 Score=37.18 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=35.2
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 5798399999828786688999899736996322774214789
Q 537021.9.peg.3 20 DIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST 62 (100)
Q Consensus 20 ~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g 62 (100)
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~ 131 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAP 131 (176)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEEEECC
T ss_conf 8831999997168835899999998646986555045566579
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system
Back Show alignment and domain information
Probab=93.86 E-value=0.35 Score=27.10 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=15.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999828786688999899736996322774
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHL 56 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l 56 (100)
T Consensus 707 ~~I~~~D~~~L~~~~a~~la~~~~~v~~A~~ 737 (903)
T TIGR01693 707 VFIYAPDQPGLFAKVAAALAALSLSVHDAQV 737 (903)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8885088301589999999625881642257
The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value
Target
100
d1ygya3 78
d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, r
7e-07
d1sc6a3 84
d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, r
9e-06
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.4 bits (110), Expect = 7e-07
Identities = 15/70 (21%), Positives = 27/70 (38%)
Query: 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84
+ I D G + +G +LG G+NI L A L +D + + V ++
Sbjct: 5 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIA 64
Query: 85 VNVTIRFVKQ 94
V ++
Sbjct: 65 AAVDAYKLEV 74
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (100), Expect = 9e-06
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81
G + ++ + G++ + I E G+NIA +L S + + + D + L+
Sbjct: 10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQ 69
Query: 82 KL 83
+
Sbjct: 70 AM 71
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability
Target 100
d1ygya3 78
Phosphoglycerate dehydrogenase, regulatory (C-terminal)
99.9
d1sc6a3 84
Phosphoglycerate dehydrogenase, regulatory (C-terminal)
99.82
d2fgca2 78
Acetolactate synthase small subunit, IlvH {Thermotoga m
98.41
d2pc6a2 77
Acetolactate synthase small subunit, IlvH {Nitrosomonas
98.41
d2f1fa1 76
Acetolactate synthase small subunit, IlvH {Escherichia
98.4
d1y7pa2 77
Hypothetical protein AF1403, N-terminal domain {Archaeo
98.39
d2f06a1 71
Hypothetical protein BT0572 {Bacteroides thetaiotaomicr
98.16
d1zpva1 83
UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId
97.92
d2f06a2 70
Hypothetical protein BT0572 {Bacteroides thetaiotaomicr
97.83
d1u8sa1 86
putative transcriptional repressor VC2159 {Vibrio chole
97.7
d1u8sa2 93
putative transcriptional repressor VC2159 {Vibrio chole
97.61
d2qmwa2 80
Prephenate dehydratase C-terminal domain {Staphylococcu
97.6
d1phza1 97
Phenylalanine hydroxylase N-terminal domain {Rat (Rattu
96.53
d2cdqa2 91
Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxI
91.55
d2hmfa2 67
Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
91.11
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=1.4e-23 Score=142.80 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 79839999982878668899989973699632277421478981899999478899899999864988299999997
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
.+||+|++.|+|+||+||+|+++|++++|||++|+++|+++++.|+|++++|++++++++++|+++|+|.+||.+++
T Consensus 1 AeG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l 77 (78)
T d1ygya3 1 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 77 (78)
T ss_dssp SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEEC
T ss_conf 98169999967969979999999986496932413300578976899999377766999999972779079999966
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=6.1e-21 Score=128.87 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.+|+|++.|+|+|||||+|+++|+++|+||++|+++++.++++|+|.+++|++++++++++|+++|+|.++|.+
T Consensus 10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l 83 (84)
T d1sc6a3 10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 83 (84)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 88389999679699899999999973999899624457877489999978887779999999779987999973
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=7.4e-07 Score=54.64 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 8399999828786688999899736996322774214789818999994--788998999998649882999999
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
.|+|-+.=+|+||++++++++|+..|+||.++.++.....+..-|.+.+ |+..-+.+...|.++.+|.+|.-+
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl 77 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 77 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 699999996777699999999861785547889821379984899999984989999999998578587999958
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]
Probab=98.41 E-value=3.4e-07 Score=56.38 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=61.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994--788998999998649882999999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
|+|.+.-+|+||++++|+++|+..|+||.++.++.....+..-|.+.+ |+..-+.+...|.++.+|.+|.-+
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dl 76 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 76 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 79999997785499999999860685468899742589983899999977888999999998578687999979
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=6.7e-07 Score=54.86 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=59.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 39999982878668899989973699632277421478981899999478--8998999998649882999999
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG--SILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~--~i~~~vl~~i~~~~~v~~vr~i 95 (100)
|+|.+.=+|+||++++++.+|+..++||.++.++.....+..-|.+.+.+ ..-+.+...|.++.+|.+|+-+
T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl 75 (76)
T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 75 (76)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 79999997777599999999872685567889704579981299999978888999999998578787999968
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.39 E-value=9.7e-07 Score=54.01 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=54.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CEEEEEEEE--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 99999828786688999899736996322774214789-818999994--78899899999864988299999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST-EHAISFLCI--DGSILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g-~~A~~ii~v--D~~i~~~vl~~i~~~~~v~~vr~ 94 (100)
-|-+.-.|+||+++.|+++++++++||.+.+......| ....+.+++ .+.--+.++++|+++|+|.+|+.
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 5999995577769999999987699968888531678817999999997586449999999876999268885
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.16 E-value=4.5e-06 Score=50.48 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=47.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 9999828786688999899736996322774214789818999994788998999998649
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
|-+.-.|+||.++++++.|++++|||.+|+.... ++.|++++.+|. |+...+.|++-
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd--~~~a~~~L~~~ 58 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSN--MDKCIEVLKEK 58 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESC--HHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC--CCCEEEEEEECC--HHHHHHHHHHC
T ss_conf 8999569824899999999878987899998847--994799999799--99999999987
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.92 E-value=2.4e-05 Score=46.63 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=44.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE--CCCCC-HHHHHHHHCCC
Q ss_conf 399999828786688999899736996322774214789818999994--78899-89999986498
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI--DGSIL-NSVLEKLSVNV 87 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v--D~~i~-~~vl~~i~~~~ 87 (100)
..|.+.-.|+||+++.|++.|+++|+||..++-... ++...+.+.+ +...+ +++.+++.++.
T Consensus 3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la 67 (83)
T d1zpva1 3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFG 67 (83)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 999999589887999999999978983999785983--79899999999845899999999999999
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.83 E-value=6.7e-05 Score=44.29 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=49.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEE
Q ss_conf 9999982878668899989973699632277421478981899999478899899999864988299
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRF 91 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~ 91 (100)
.|-+.-+|+||.+++++.+|+++||||.++.++... +.++.-+-+| -|++..+.|++.--...
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~--~~~i~Riiv~--~~e~a~~~L~~~g~~v~ 67 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVS--DPDKAYKALKDNHFAVN 67 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEES--CHHHHHHHHHHTTCCEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECC--CCCEEEEEEC--CHHHHHHHHHHCCCEEE
T ss_conf 999998378767999999998789778999976258--8988999987--84999999998798894
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]
Probab=97.70 E-value=1.6e-05 Score=47.55 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=38.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 8399999828786688999899736996322774214789818999994788
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS 74 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~ 74 (100)
...+.+.-.|+||+++.+++.|+++|+||...+..+. ++...+++.++.+
T Consensus 5 ~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 5 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEEC
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEE--CCEEEEEEEEECC
T ss_conf 8999999389871999999999987976999674997--8915999999868
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]
Probab=97.61 E-value=0.00018 Score=42.06 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=39.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCEEEEEEEE--CCCCC-HHHHHHHHCC
Q ss_conf 9999982878668899989973699632277421478------9818999994--78899-8999998649
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS------TEHAISFLCI--DGSIL-NSVLEKLSVN 86 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~------g~~A~~ii~v--D~~i~-~~vl~~i~~~ 86 (100)
.+.+.-.|+||+++.|+++|+++++||..++...... .....|-+.+ ....+ +++.+++.++
T Consensus 8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l 78 (93)
T d1u8sa2 8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 78 (93)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999799899899999999986998053321232456786667658999999758643589999999999
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]
Probab=97.60 E-value=0.00018 Score=42.03 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=49.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHHHHHHHHCCC-CEEEEEEE
Q ss_conf 99999828786688999899736996322774214789--8189999947889989999986498-82999999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNSVLEKLSVNV-TIRFVKQF 95 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~vl~~i~~~~-~v~~vr~i 95 (100)
++++...|+||.++++-+.++++|||+...+- |..++ +.-.-.+++++...+.+.+.++++. ....+|.+
T Consensus 4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeS-RP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kvL 76 (80)
T d2qmwa2 4 FLITPMHDKPGLLASVLNTFALFNINLSWIES-RPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEMI 76 (80)
T ss_dssp EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEE-EECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-EECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99986799887899999999987987899995-64289985699999985488689999999999835968999
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.53 E-value=0.0025 Score=36.06 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 839999982878668899989973699632277421478-9818999994788998999998649
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS-TEHAISFLCIDGSILNSVLEKLSVN 86 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~-g~~A~~ii~vD~~i~~~vl~~i~~~ 86 (100)
...|++.-.|+||.++.+-+.|++++||+....-.-... .+.-.-.+++++...+.+...|..+
T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L 80 (97)
T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSL 80 (97)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 08999996997878999999999879878999813168999449999984468849999999999
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.55 E-value=0.059 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC----CCHHHHHHHHCCCCEEEEEEE
Q ss_conf 28786688999899736996322774214789818999994788----998999998649882999999
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS----ILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~----i~~~vl~~i~~~~~v~~vr~i 95 (100)
.++||+.+++-+.|++++|||..... +.....+++=+-|.. ...++-+.++.++.+-.|..+
T Consensus 24 ~~~~G~~a~if~~La~~~Inv~~Is~---Se~~is~~v~~~~~~~a~~~~~~~~~~~~el~~ia~VsVv 89 (91)
T d2cdqa2 24 LGQVGFLAKVFSIFEELGISVDVVAT---SEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLL 89 (91)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEE---ETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEE---CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 88723999999999985992799980---6876999983668899999999999999998477269995
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]
Probab=91.11 E-value=0.14 Score=26.74 Aligned_cols=50 Identities=32% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 31 ADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 31 ~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
+++||+.+++-+.|++++|||.-..-+ ..+..++++- ++.--+..++.|.
T Consensus 12 ~~~~gi~arif~~L~~~~InV~mIsq~---~Se~~Is~~V-~~~d~~~Av~~Lh 61 (67)
T d2hmfa2 12 RGAKGIAGKIFTAVSESGANIKMIAQG---SSEVNISFVI-DEKDLLNCVRKLH 61 (67)
T ss_dssp TTCTTHHHHHHHHHHHTTCCCCEEEES---SCSSEEEEEE-EGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHEEEC---CCCCEEEEEE-EHHHHHHHHHHHH
T ss_conf 888239999999999869986774534---8602499998-0899999999999
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
>1ygy_A (A:453-529) PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}Length = 77
Back Hide alignment and structure
Score = 47.7 bits (114), Expect = 5e-07
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEK 82
+ + I D G + +G +LG G+NI L A L +D + + V
Sbjct: 2 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTA 61
Query: 83 LSVNVTIRFVKQFEFN 98
++ V ++ + +
Sbjct: 62 IAAAVDAYKLEVVDLS 77
>3k5p_A (A:333-416) D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}Length = 84
Back Show alignment and structure
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/80 (15%), Positives = 28/80 (35%)
Query: 14 EINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDG 73
++ V+ + GI+ + N+ + INIA L + + G
Sbjct: 2 QVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVG 61
Query: 74 SILNSVLEKLSVNVTIRFVK 93
++VL+++ +
Sbjct: 62 EASDAVLQEIREIPGTIRAR 81
>1sc6_A (A:322-404) PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli}Length = 83
Back Show alignment and structure
Score = 42.7 bits (101), Expect = 2e-05
Identities = 12/72 (16%), Positives = 27/72 (37%)
Query: 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLE 81
G + ++ + G++ + I E G+NIA +L S + + + D + L+
Sbjct: 9 GGRRLXHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQ 68
Query: 82 KLSVNVTIRFVK 93
+
Sbjct: 69 AXKAIPGTIRAR 80
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 100
1ygy_A_453-529 77
PGDH, D-3-phosphoglycerate dehydrogenase; oxidored
99.81
3k5p_A_333-416 84
D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,
99.77
1sc6_A_322-404 83
PGDH, D-3-phosphoglycerate dehydrogenase; alloster
99.72
2fgc_A_1-106 106
Acetolactate synthase, small subunit; regulatory s
99.27
2pc6_A_1-80 80
Probable acetolactate synthase isozyme III (small
99.27
2f1f_A_1-79 79
Acetolactate synthase isozyme III small subunit; f
99.2
2ko1_A_ 88
CTR148A, GTP pyrophosphokinase; homodimer, alpha+b
99.15
2jhe_A_1-73 73
Transcription regulator TYRR; aromatic hydrocarbon
98.34
2nyi_A_1-84 84
Unknown protein; protein structure initiative, PSI
98.27
1zpv_A_ 91
ACT domain protein; structural genomics, PSI, prot
98.23
1y7p_A_1-83 83
Hypothetical protein AF1403; structural genomics,
98.2
3lou_A_1-93 93
Formyltetrahydrofolate deformylase; structural gen
98.09
2nyi_A_85-195 111
Unknown protein; protein structure initiative, PSI
98.07
2f06_A_76-134 59
Conserved hypothetical protein; structural genomic
97.82
1u8s_A_87-192 106
Glycine cleavage system transcriptional repressor,
97.8
1u8s_A_1-86 86
Glycine cleavage system transcriptional repressor,
97.71
2qmw_A_1-87_166-267 189
PDT, prephenate dehydratase; APC85812, prephenate
97.4
1phz_A_1-131 131
Protein (phenylalanine hydroxylase); aromatic amin
96.49
2re1_A_25-102 78
Aspartokinase, alpha and beta subunits; structural
95.44
2dtj_A_15-94 80
Aspartokinase; protein-ligand complex, regulatory
94.9
2dt9_A_16-94 79
Aspartokinase; protein-ligand complex, regulatory
94.13
2qmx_A_186-280 95
Prephenate dehydratase; APC86053, L-Phe inhibition
91.96
>1ygy_A (A:453-529) PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
Back Hide alignment and structure
Probab=99.81 E-value=2.1e-19 Score=122.80 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=74.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 98399999828786688999899736996322774214789818999994788998999998649882999999974
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEFN 98 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~~ 98 (100)
++|+|++.|+|+|||||+|+++|+++++||++|.++|.++++.|++++++|++++++++++|++++++.+++++++.
T Consensus 1 e~~~i~~~~~d~pGvla~I~~il~~~~vNI~~~~~~~~~~~~~a~~~i~~d~~~~~~i~~~i~~l~~v~~v~~i~l~ 77 (77)
T 1ygy_A 1 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 77 (77)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEECC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECC
T ss_conf 87689998278698689999998757978603787226889768999996899999999998648796189999529
>3k5p_A (A:333-416) D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Back Show alignment and structure
Probab=99.77 E-value=6.8e-19 Score=120.14 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=79.8
Q ss_pred CCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEE
Q ss_conf 99899765798399999828786688999899736996322774214789818999994788998999998649882999
Q 537021.9.peg.3 13 QEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFV 92 (100)
Q Consensus 13 ~g~~v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~v 92 (100)
+.+++++.+++++|.+.|+|+||++|+|+++|+++++||++|.+++..+++.|++++++|++..++++++|++++++.+|
T Consensus 1 P~~~~~~~~~~~~l~i~~~d~pGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~i~i~~d~~~~~~i~~~l~~l~~V~~v 80 (84)
T 3k5p_A 1 PQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRA 80 (84)
T ss_dssp CCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 86247877888549985035125999999999876998788640255746699998236776569999999718888999
Q ss_pred EEE
Q ss_conf 999
Q 537021.9.peg.3 93 KQF 95 (100)
Q Consensus 93 r~i 95 (100)
+++
T Consensus 81 ~~i 83 (84)
T 3k5p_A 81 RLL 83 (84)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 874
>1sc6_A (A:322-404) PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
Back Show alignment and structure
Probab=99.72 E-value=9.7e-18 Score=114.06 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=74.0
Q ss_pred EEEE-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 9765-798399999828786688999899736996322774214789818999994788998999998649882999999
Q 537021.9.peg.3 17 FDVD-IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 17 v~~~-~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
+++. +++|+|.+.|+|+||+||+|+++|+++++||++|.+++.+.++.|++.+++|.+.+++++++|+++++|.+|+.+
T Consensus 3 v~~~~~~~~~l~i~~~D~pGvla~Is~~l~~~~iNI~~~~~~~~~~~~~a~i~i~vd~~~~~~i~~~l~~l~~V~~V~~l 82 (83)
T 1sc6_A 3 VSLPLHGGRRLXHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQAXKAIPGTIRARLL 82 (83)
T ss_dssp CCCCCCSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 03555787489998358776689999999876998799753677545699999844787549999999738988999860
>2fgc_A (A:1-106) Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Back Show alignment and structure
Probab=99.27 E-value=1.8e-11 Score=81.06 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=70.0
Q ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEE--EECCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 97657983999998287866889998997369963227742147898189999--9478899899999864988299999
Q 537021.9.peg.3 17 FDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFL--CIDGSILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 17 v~~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii--~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100)
.+-....|+|-+...|+||++++|+++|+++|+||.++...+...++.+.+++ ..|....+.++++|+++++|.+|..
T Consensus 23 ~~~~~~~~~lri~v~d~pGvLa~It~vl~~~gvnI~si~~~~~~~~~~~~~~i~~~~~~~~l~~~i~~l~kl~~V~~V~r 102 (106)
T 2fgc_A 23 XTDQIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQIEKQAYKLVEVVKVTP 102 (106)
T ss_dssp ----CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEE
T ss_pred CCCHHHEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 34600289999999788789999999986268572578863566787479999997798999999999854227687664
Q ss_pred EE
Q ss_conf 99
Q 537021.9.peg.3 95 FE 96 (100)
Q Consensus 95 i~ 96 (100)
++
T Consensus 103 i~ 104 (106)
T 2fgc_A 103 ID 104 (106)
T ss_dssp CC
T ss_pred EC
T ss_conf 00
>2pc6_A (A:1-80) Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718}
Back Show alignment and structure
Probab=99.27 E-value=1.1e-11 Score=82.14 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 9839999982878668899989973699632277421478981899--9994788998999998649882999999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAIS--FLCIDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~--ii~vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
..|+|-+..+|+||++++|+++|+++|+||.+|...+...++.+.+ +...|+..-++++++|+++++|.+|+.+
T Consensus 3 ~k~~i~i~~~d~pGvLa~It~ifa~~ginI~si~~~~~~~~~~~~~~i~~~~~e~~l~~~i~~l~kl~~V~~V~~~ 78 (80)
T 2pc6_A 3 XRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 78 (80)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 4499999998775799999999862575556888603368986899999968788999999999557575575245
>2f1f_A (A:1-79) Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli}
Back Show alignment and structure
Probab=99.20 E-value=4.3e-11 Score=79.03 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE--ECCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf 9839999982878668899989973699632277421478981899999--4788998999998649882999999
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLC--IDGSILNSVLEKLSVNVTIRFVKQF 95 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~--vD~~i~~~vl~~i~~~~~v~~vr~i 95 (100)
..++|-+...|+||++++|+++|+++++||.+|+..+...++...+++. .|..-.+.++++|+++++|.+|+.+
T Consensus 2 ~~~~i~i~~~d~pGvLa~It~v~~~~~vNI~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~i~~V~~V~ri 77 (79)
T 2f1f_A 2 ARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 77 (79)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 6599999997786799999999860675556888603368976899999856989999999999617473052238
>2ko1_A (A:) CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Back Show alignment and structure
Probab=99.15 E-value=1.1e-10 Score=76.89 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=63.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 399999828786688999899736996322774214789818999994-78899899999864988299999997
Q 537021.9.peg.3 24 LMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 24 ~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
-+|.+.+.|+||++++|+++|+++++||.+|.+.+........+.+++ |.+-.+.++++|+++++|.+|+.+.-
T Consensus 6 ~~l~v~~~DrpGlL~~It~~la~~~inI~~i~~~~~~~~~~~~~~v~v~d~~~l~~ii~~l~~i~~V~~V~r~~~ 80 (88)
T 2ko1_A 6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN 80 (88)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 999999966878899999999987982999999826998999999999999999999999977999878999861
>2jhe_A (A:1-73) Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli}
Back Show alignment and structure
Probab=98.34 E-value=1e-06 Score=55.95 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=54.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEE-CCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 99999828786688999899736996322774214789818999994-78899899999864988299999997
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCI-DGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~v-D~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
.|-+.-.|+||+++.|++++++.++||.++...+ . +.-...+++ |..--+.++.+|+++|||.+|+-+.+
T Consensus 2 ri~I~~~Dr~GlL~dI~~vis~~~~nI~~~~~~~--~-~~i~l~iev~~~~~L~~ii~~L~~i~gV~~V~Rv~~ 72 (73)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--I-GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPW 72 (73)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--T-TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEC--C-CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0799831015449999999986695499999724--6-419993344465789999999998750656653333
>2nyi_A (A:1-84) Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Back Show alignment and structure
Probab=98.27 E-value=3.8e-06 Score=52.94 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf 7983999998287866889998997369963227742147898189999947889989999986498829
Q 537021.9.peg.3 21 IGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNVTIR 90 (100)
Q Consensus 21 ~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~ 90 (100)
+..+.|.+.-.|+||+++.|+++|+++|+||...+.......+..+|.++.+.+-.+++.++|+++..-.
T Consensus 3 ~~~~vltv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~~~~ 72 (84)
T 2nyi_A 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRXACLGGDFAXIVLVSLNAKDGKLIQSALESALPGF 72 (84)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTC
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 4499999992698889999999999879989975618970756888763024304667899999986226
>1zpv_A (A:) ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4}
Back Show alignment and structure
Probab=98.23 E-value=6.4e-06 Score=51.74 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCCC
Q ss_conf 9839999982878668899989973699632277421478981899999478899-89999986498
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSIL-NSVLEKLSVNV 87 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~-~~vl~~i~~~~ 87 (100)
....|.+.-.|+||+++.++.+|+++|+||...+...........|.+++..+.+ +++.+++.++.
T Consensus 4 ~~~vitv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~ 70 (91)
T 1zpv_A 4 XKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTXXAVVSSDEKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3599999938988799999999998799399805189379518999996699999999999999999
>1y7p_A (A:1-83) Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus}
Back Show alignment and structure
Probab=98.20 E-value=1.3e-05 Score=50.20 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=51.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC---CCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 9999982878668899989973699632277421478---981899999478899899999864988299999
Q 537021.9.peg.3 25 MICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS---TEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQ 94 (100)
Q Consensus 25 ~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~---g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~ 94 (100)
+|-+.-.|+||+++.|+++++++++||.++...+... .+.+.+-+.+.-.=.+.+-.-+++++.+..+..
T Consensus 6 ~l~v~~~Dr~G~L~~I~~iia~~~~nI~~i~~~~~~~~~~~~~~~~~~~v~v~~~~~l~~ii~~L~~i~~V~~ 78 (83)
T 1y7p_A 6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 78 (83)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 5899975876559998889986389759998773036677882689999828998999999866996589996
>3lou_A (A:1-93) Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Back Show alignment and structure
Probab=98.09 E-value=8.5e-06 Score=51.11 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=51.4
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCC-----CC-HHHHHHHHCC
Q ss_conf 65798399999828786688999899736996322774214789818999994788-----99-8999998649
Q 537021.9.peg.3 19 VDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGS-----IL-NSVLEKLSVN 86 (100)
Q Consensus 19 ~~~~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~-----i~-~~vl~~i~~~ 86 (100)
.....+.|.+.-.|+||+++.|+++|+++|+||...+.......+...|.+.++.+ .+ +++.+++.++
T Consensus 6 ~~~~~~vitv~g~Dr~GiVa~vt~~la~~g~NI~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~l~~~l~~~ 79 (93)
T 3lou_A 6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (93)
T ss_dssp --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99972899998999886499999999978999858745348888807898999715885533889999988877
>2nyi_A (A:85-195) Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Back Show alignment and structure
Probab=98.07 E-value=8.4e-06 Score=51.11 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCCEEEEEEEECCCCC----HHHHHHHHCC
Q ss_conf 839999982878668899989973699632277421--478981899999478899----8999998649
Q 537021.9.peg.3 23 RLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR--SQSTEHAISFLCIDGSIL----NSVLEKLSVN 86 (100)
Q Consensus 23 ~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r--~~~g~~A~~ii~vD~~i~----~~vl~~i~~~ 86 (100)
.+.+.+.-.|+||+++.|+.+|+++|+||..+...+ ...++..+|.++.+-+.+ +++.+++.++
T Consensus 9 ~~~it~~g~DrpGiva~it~~la~~g~nI~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~L~~l 78 (111)
T 2nyi_A 9 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRXGSRVAFPFPLYQEVVTALSRV 78 (111)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999429878999999999976957878777576489888624999999967966279999999999
>2f06_A (A:76-134) Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482}
Back Show alignment and structure
Probab=97.82 E-value=3.8e-05 Score=47.67 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 998287866889998997369963227742147898189999947889989999986
Q 537021.9.peg.3 28 IVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLS 84 (100)
Q Consensus 28 i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~ 84 (100)
+.-.|+||-++++..+|++++|||.+|+..- .++.|++++.+|.+ +...+.|+
T Consensus 2 V~v~D~pG~La~vl~~l~~~~InIeY~Yaf~--~~~~a~~i~r~~d~--~~A~~vL~ 54 (59)
T 2f06_A 2 ISCPNVPGALAKVLGFLSAEGVFIEYXYSFA--NNNVANVVIRPSNX--DKCIEVLK 54 (59)
T ss_dssp EEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEESCH--HHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEEEC--CCCCEEEEEECCCH--HHHHHHHH
T ss_conf 4466786379999999987799918745005--76727999984889--99999999
>1u8s_A (A:87-192) Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae}
Back Show alignment and structure
Probab=97.80 E-value=0.00014 Score=44.67 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=46.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCEEEEEEEEC--CCCC-HHHHHHHHCC
Q ss_conf 9839999982878668899989973699632277421478------98189999947--8899-8999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQS------TEHAISFLCID--GSIL-NSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~------g~~A~~ii~vD--~~i~-~~vl~~i~~~ 86 (100)
....+.+.-.|+||++++|+++|+++|+||..++...... .+...|.+.++ ...+ +++.+++.++
T Consensus 6 ~~~~i~v~g~DrpGiva~it~~la~~~~nI~~l~~~~~~~~~~~~~~~~f~m~~~~~~p~~~~~~~l~~~l~~l 79 (106)
T 1u8s_A 6 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 79 (106)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 16999998447068999999999977996668999953677666778579999999759999999999999999
>1u8s_A (A:1-86) Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae}
Back Show alignment and structure
Probab=97.71 E-value=4e-05 Score=47.54 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=48.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCC--CHHHHHHHHCC
Q ss_conf 983999998287866889998997369963227742147898189999947889--98999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSI--LNSVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i--~~~vl~~i~~~ 86 (100)
+...|.+.-.|+||+++.|++.|+++|+||....... .++.-.|.+.++.+. .+++.++++.+
T Consensus 5 ~~~vitv~g~DrpGiva~is~~la~~g~nI~~~~~~~--~~~~f~~~~~~~~~~~~~~~l~~~l~~~ 69 (86)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGSPSNITRVETTLPLL 69 (86)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEE--ECCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 1899999926988599999999998799599858899--8796299998505845667899999998
>2qmw_A (A:1-87,A:166-267) PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp}
Back Show alignment and structure
Probab=97.40 E-value=0.0014 Score=39.36 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.3
Q ss_pred CEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CEEEEEEEECCCCCHHHHHHHHCCC-CEEEEEEE
Q ss_conf 3999998-28786688999899736996322774214789--8189999947889989999986498-82999999
Q 537021.9.peg.3 24 LMICIVN-ADILGIVVFVGNILGEYGINIAHFHLGRSQST--EHAISFLCIDGSILNSVLEKLSVNV-TIRFVKQF 95 (100)
Q Consensus 24 ~~L~i~~-~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g--~~A~~ii~vD~~i~~~vl~~i~~~~-~v~~vr~i 95 (100)
..|++.- +|+||.+.++-+.+++++||+..... |..++ +.-.-.+++++...+.+.+.++++. ....+|.+
T Consensus 111 tsl~f~l~~d~pGaL~~vL~~F~~~~INLt~IeS-RP~~~~~~~Y~FfiD~eg~~~~~~~~al~~L~~~~~~vkiL 185 (189)
T 2qmw_A 111 LXFLITPXHDKPGLLASVLNTFALFNINLSWIES-RPLKTQLGXYRFFVQADSAITTDIKKVIAILETLDFKVEXI 185 (189)
T ss_dssp EEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEE-EECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEE-EECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 0133210489860799987789877810699983-10689996289999965789989999999999844937998
>1phz_A (A:1-131) Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus}
Back Show alignment and structure
Probab=96.49 E-value=0.0066 Score=35.87 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=49.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-EEEEEEEECCCCCH---HHHHHHHCC
Q ss_conf 983999998287866889998997369963227742147898-18999994788998---999998649
Q 537021.9.peg.3 22 GRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTE-HAISFLCIDGSILN---SVLEKLSVN 86 (100)
Q Consensus 22 ~~~~L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~-~A~~ii~vD~~i~~---~vl~~i~~~ 86 (100)
+...|++.-+|+||.++.+-..++++|||+......-..... .-.-.+++++...+ +++++|++.
T Consensus 33 ~ktsi~f~l~d~~GaL~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~vd~e~~~~~~~~~~l~~L~~~ 101 (131)
T 1phz_A 33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRND 101 (131)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 608999996876158999999999869369996368887888862699998267847899999999987
>2re1_A (A:25-102) Aspartokinase, alpha and beta subunits; structural genomics, PSI-2, protein structure initiative; 2.75A {Neisseria meningitidis MC58}
Back Show alignment and structure
Probab=95.44 E-value=0.038 Score=31.84 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=41.0
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 9998287866889998997369963227742147898189999947889989999986498
Q 537021.9.peg.3 27 CIVNADILGIVVFVGNILGEYGINIAHFHLGRSQSTEHAISFLCIDGSILNSVLEKLSVNV 87 (100)
Q Consensus 27 ~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~ 87 (100)
+.--.|+||+.+++-+.|+++||||.-..-+ ....+..-+-+.+.+.--+.+++.|.+.-
T Consensus 6 v~gv~~~pGiaa~if~~La~~~InVdmI~Q~-~~~~~~~~isftv~~~d~~~a~~~l~~~~ 65 (78)
T 2re1_A 6 VRGVPDKPGVAYQILGAVADANIEVDXIIQN-VGSEGTTDFSFTVPRGDYKQTLEILSERQ 65 (78)
T ss_dssp EEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSS
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCHHEEEEE-CCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9158998427899999998837671104662-15688247999841102577888886531
>2dtj_A (A:15-94) Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum}
Back Show alignment and structure
Probab=94.90 E-value=0.044 Score=31.51 Aligned_cols=72 Identities=15% Similarity=-0.046 Sum_probs=45.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 99998287866889998997369963227742-1478981899999478899899999864988299999997
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSILNSVLEKLSVNVTIRFVKQFEF 97 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~~~vl~~i~~~~~v~~vr~i~~ 97 (100)
-+.--.|+||+.+++-+.|++++|||.-..-+ +...++..-+-+.+.+.=-+.+++.|.+.-.-.....++.
T Consensus 5 ti~gi~~~pgvaa~iF~~La~~~InVdMI~Q~~s~~~~~~~~isftv~~~d~~~a~~~L~~~~~el~~~~i~~ 77 (80)
T 2dtj_A 5 TVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLY 77 (80)
T ss_dssp EEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9905899860899999999984436223103332112311255304404566666765201113344321687
>2dt9_A (A:16-94) Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Back Show alignment and structure
Probab=94.13 E-value=0.053 Score=31.08 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=36.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCEEEEEEEECCCCCHHHHHHHHC
Q ss_conf 99998287866889998997369963227742-1478981899999478899899999864
Q 537021.9.peg.3 26 ICIVNADILGIVVFVGNILGEYGINIAHFHLG-RSQSTEHAISFLCIDGSILNSVLEKLSV 85 (100)
Q Consensus 26 L~i~~~D~PG~I~~v~~~L~~~~INIa~m~l~-r~~~g~~A~~ii~vD~~i~~~vl~~i~~ 85 (100)
-+.--.|+||+.+++-+.|++++|||.-..=+ +...++..-.-+.+.+.=-+.+++.|.+
T Consensus 5 sv~g~~~~~g~aa~if~~La~~~InVdmI~Q~~s~~~~~~~~isFtv~~~d~~~A~~~L~~ 65 (79)
T 2dt9_A 5 GLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 65 (79)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHH
T ss_conf 9916899865799999999972998013553102345642112114126788888887766