peg_789
GeneID in NCBI database: | Locus tag: | ||
Protein GI in NCBI database: | not defined in NCBI database | Protein Accession: | |
Gene range: | +(841921, 842352) | Protein Length: | 143aa |
Gene description: | |||
COG prediction: | none | ||
KEGG prediction: | not defined in KEGG | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 143 | ||||
315122708 | 416 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 1e-60 | |
227821638 | 436 | ABC transporter, membrane spanning protein [Sinorhizobi | 1 | 7e-39 | |
209548883 | 434 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 2e-38 | |
15965040 | 408 | hypothetical protein SMc01935 [Sinorhizobium meliloti 1 | 1 | 2e-38 | |
319783001 | 428 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 2e-38 | |
307301112 | 437 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 2e-38 | |
241204107 | 434 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 3e-38 | |
218682656 | 421 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 4e-38 | |
218661192 | 344 | lipoprotein ABC transporter, permease protein [Rhizobiu | 1 | 4e-38 | |
260462252 | 428 | lipoprotein releasing system, transmembrane protein, Lo | 1 | 5e-38 |
>gi|315122708|ref|YP_004063197.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 416 | Back alignment and organism information |
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Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/143 (83%), Positives = 132/143 (92%) Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60 MFVILALIVLVA+LNIIS LVMLV+E+RRDIAILRTMGARISSIM+IFFMIGAFIGI+GT Sbjct: 274 MFVILALIVLVASLNIISGLVMLVKEKRRDIAILRTMGARISSIMAIFFMIGAFIGISGT 333 Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120 G+I+GILIS NVE IR+FFL+ GVVIFDTEAYLLTELPSKISW+EVSWI++M + LS Sbjct: 334 CAGVIIGILISVNVEVIRQFFLNAFGVVIFDTEAYLLTELPSKISWIEVSWIVAMTVFLS 393 Query: 121 LLATIFPSWKASRIDPVKVLRGE 143 LLATIFPSWKASRIDPVK LR E Sbjct: 394 LLATIFPSWKASRIDPVKALRYE 416 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227821638|ref|YP_002825608.1| ABC transporter, membrane spanning protein [Sinorhizobium fredii NGR234] Length = 436 | Back alignment and organism information |
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>gi|209548883|ref|YP_002280800.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 434 | Back alignment and organism information |
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>gi|15965040|ref|NP_385393.1| hypothetical protein SMc01935 [Sinorhizobium meliloti 1021] Length = 408 | Back alignment and organism information |
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>gi|319783001|ref|YP_004142477.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 428 | Back alignment and organism information |
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>gi|307301112|ref|ZP_07580881.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Sinorhizobium meliloti BL225C] Length = 437 | Back alignment and organism information |
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>gi|241204107|ref|YP_002975203.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 434 | Back alignment and organism information |
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>gi|218682656|ref|ZP_03530257.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Rhizobium etli CIAT 894] Length = 421 | Back alignment and organism information |
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>gi|218661192|ref|ZP_03517122.1| lipoprotein ABC transporter, permease protein [Rhizobium etli IE4771] Length = 344 | Back alignment and organism information |
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>gi|260462252|ref|ZP_05810496.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Mesorhizobium opportunistum WSM2075] Length = 428 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 143 | |||
TIGR02212 | 411 | TIGR02212, lolCE, lipoprotein releasing system, transme | 6e-43 | |
PRK11146 | 412 | PRK11146, PRK11146, outer membrane-specific lipoprotein | 7e-25 | |
TIGR02213 | 411 | TIGR02213, lolE_release, lipoprotein releasing system, | 6e-24 | |
PRK10814 | 399 | PRK10814, PRK10814, outer membrane-specific lipoprotein | 2e-21 | |
pfam02687 | 174 | pfam02687, FtsX, Predicted permease | 3e-06 | |
TIGR03434 | 803 | TIGR03434, ADOP, Acidobacterial duplicated orphan perme | 2e-04 | |
COG0577 | 419 | COG0577, SalY, ABC-type antimicrobial peptide transport | 0.002 | |
COG4591 | 408 | COG4591, LolE, ABC-type transport system, involved in l | 4e-32 |
>gnl|CDD|162764 TIGR02212, lolCE, lipoprotein releasing system, transmembrane protein, LolC/E family | Back alignment and domain information |
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>gnl|CDD|182995 PRK11146, PRK11146, outer membrane-specific lipoprotein transporter subunit LolE; Provisional | Back alignment and domain information |
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>gnl|CDD|131268 TIGR02213, lolE_release, lipoprotein releasing system, transmembrane protein LolE | Back alignment and domain information |
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>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter subunit LolC; Provisional | Back alignment and domain information |
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>gnl|CDD|145704 pfam02687, FtsX, Predicted permease | Back alignment and domain information |
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>gnl|CDD|163262 TIGR03434, ADOP, Acidobacterial duplicated orphan permease | Back alignment and domain information |
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>gnl|CDD|30922 COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
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>gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 143 | |||
TIGR02212 | 414 | lolCE lipoprotein releasing system, transmembrane prote | 100.0 | |
PRK11146 | 412 | outer membrane-specific lipoprotein transporter subunit | 100.0 | |
TIGR02213 | 416 | lolE_release lipoprotein releasing system, transmembran | 100.0 | |
COG4591 | 408 | LolE ABC-type transport system, involved in lipoprotein | 100.0 | |
PRK10535 | 648 | macrolide transporter ATP-binding /permease protein; Pr | 99.98 | |
PRK10814 | 396 | outer membrane-specific lipoprotein transporter subunit | 99.98 | |
TIGR03434 | 803 | ADOP Acidobacterial duplicated orphan permease. Members | 99.93 | |
TIGR03434 | 803 | ADOP Acidobacterial duplicated orphan permease. Members | 99.9 | |
COG0577 | 419 | SalY ABC-type antimicrobial peptide transport system, p | 99.86 | |
pfam02687 | 174 | FtsX Predicted permease. This is a family of predicted | 99.81 | |
PRK11026 | 309 | ftsX cell division protein FtsX; Provisional | 99.51 | |
TIGR01185 | 381 | devC DevC protein; InterPro: IPR005891 ABC transporters | 99.19 | |
COG3127 | 829 | Predicted ABC-type transport system involved in lysopho | 99.15 | |
TIGR00439 | 314 | ftsX putative protein insertion permease FtsX; InterPro | 98.94 | |
COG3127 | 829 | Predicted ABC-type transport system involved in lysopho | 98.73 | |
COG2177 | 297 | FtsX Cell division protein [Cell division and chromosom | 99.19 | |
COG0795 | 364 | Predicted permeases [General function prediction only] | 92.08 | |
pfam03739 | 353 | YjgP_YjgQ Predicted permease YjgP/YjgQ family. Members | 90.81 |
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family; InterPro: IPR011925 This entry describes the LolC protein, and its paralog LolE found in some species | Back alignment and domain information |
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>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional | Back alignment and domain information |
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>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE; InterPro: IPR011926 This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane | Back alignment and domain information |
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>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
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>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional | Back alignment and domain information |
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>TIGR03434 ADOP Acidobacterial duplicated orphan permease | Back alignment and domain information |
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>TIGR03434 ADOP Acidobacterial duplicated orphan permease | Back alignment and domain information |
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>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
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>pfam02687 FtsX Predicted permease | Back alignment and domain information |
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>PRK11026 ftsX cell division protein FtsX; Provisional | Back alignment and domain information |
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>TIGR01185 devC DevC protein; InterPro: IPR005891 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
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>TIGR00439 ftsX putative protein insertion permease FtsX; InterPro: IPR004513 FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE | Back alignment and domain information |
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>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
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>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
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>COG0795 Predicted permeases [General function prediction only] | Back alignment and domain information |
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>pfam03739 YjgP_YjgQ Predicted permease YjgP/YjgQ family | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00