ECOD
F-group (family)

1.1.7.2 Ribosomal_L3

Open in classification tree →Pfam PF00297 →

Ligands and drugs

3,411
Member domains
1,501
with ligand contacts (≤ 4 Å)
44.0% of members
851
with DrugDomain annotations
24.9% of members
26
with a DrugBank compound
0.8% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 1.1.7.2 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02377GUNGuanine9
DB03566SPDSpermidine9
DB01917PUTPutrescine3
DB04729LLLGentamicin C1a2
DB00131AAdenosine phosphate1
DB01972GGuanosine-5'-Monophosphate1
DB02494—(S)-3-phenyllactic acid1
DB03403CCytidine-5'-Monophosphate1
DB03685UUridine monophosphate1
DB03829PSUPseudouridine-5'-Monophosphate1
DB04263GETGeneticin1
DB04865—Omacetaxine mepesuccinate1
DB07374——1
DB08437—Puromycin1
DB09092——1

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION1,491
OHXosmium (III) hexammine78
KmetalPOTASSIUM ION73
CLCHLORIDE ION68
NAmetalSODIUM ION68
PUT1,4-DIAMINOBUTANE41
SPDSPERMIDINE35
SR0N~1~-(3-azaniumylpropyl)butane-1,4-diaminium32
SRmetalSTRONTIUM ION30
UNXUNKNOWN ATOM OR ION11
GUNGUANINE8
MNmetalMANGANESE (II) ION7
GETGENETICIN4
SPMSPERMINE3
LLL(2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL2
ZNmetalZINC ION2
84DDibekacin1